Multiple sequence alignment - TraesCS2A01G221100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G221100 chr2A 100.000 3146 0 0 1 3146 209584874 209581729 0.000000e+00 5810
1 TraesCS2A01G221100 chr2B 93.613 2145 81 21 1 2120 250904206 250902093 0.000000e+00 3151
2 TraesCS2A01G221100 chr2D 93.130 1179 38 12 928 2101 194807695 194806555 0.000000e+00 1688
3 TraesCS2A01G221100 chr2D 90.110 728 72 0 2419 3146 101435860 101435133 0.000000e+00 946
4 TraesCS2A01G221100 chr2D 92.122 622 19 9 305 898 194808311 194807692 0.000000e+00 850
5 TraesCS2A01G221100 chr2D 96.405 306 7 2 1 306 194808681 194808380 4.680000e-138 501
6 TraesCS2A01G221100 chr1A 96.484 768 27 0 2379 3146 510343572 510344339 0.000000e+00 1269
7 TraesCS2A01G221100 chr7D 91.064 705 63 0 2442 3146 201166077 201166781 0.000000e+00 953
8 TraesCS2A01G221100 chr7D 86.498 711 96 0 2436 3146 27209013 27209723 0.000000e+00 782
9 TraesCS2A01G221100 chr7D 87.786 655 77 3 2493 3146 109520421 109521073 0.000000e+00 763
10 TraesCS2A01G221100 chr7A 84.853 713 102 5 2434 3145 657680295 657681002 0.000000e+00 713
11 TraesCS2A01G221100 chr5D 84.509 723 109 3 2423 3145 420204613 420203894 0.000000e+00 712
12 TraesCS2A01G221100 chr3D 84.734 714 98 7 2434 3145 163882217 163882921 0.000000e+00 704
13 TraesCS2A01G221100 chr3D 96.396 111 4 0 2099 2209 419583002 419583112 1.930000e-42 183
14 TraesCS2A01G221100 chr5B 83.780 709 115 0 2436 3144 190583795 190583087 0.000000e+00 673
15 TraesCS2A01G221100 chr7B 97.297 111 3 0 2099 2209 732134689 732134579 4.140000e-44 189
16 TraesCS2A01G221100 chr7B 97.248 109 3 0 2098 2206 22065645 22065537 5.360000e-43 185
17 TraesCS2A01G221100 chr7B 96.460 113 3 1 2097 2208 22070410 22070298 5.360000e-43 185
18 TraesCS2A01G221100 chr7B 95.614 114 5 0 2098 2211 582537853 582537740 1.930000e-42 183
19 TraesCS2A01G221100 chr6A 97.273 110 3 0 2098 2207 587781958 587782067 1.490000e-43 187
20 TraesCS2A01G221100 chr3B 97.248 109 3 0 2099 2207 776360226 776360334 5.360000e-43 185
21 TraesCS2A01G221100 chr1B 93.496 123 7 1 2100 2222 533752034 533752155 6.930000e-42 182
22 TraesCS2A01G221100 chr6B 93.333 120 8 0 2099 2218 20752604 20752485 8.970000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G221100 chr2A 209581729 209584874 3145 True 5810 5810 100.000000 1 3146 1 chr2A.!!$R1 3145
1 TraesCS2A01G221100 chr2B 250902093 250904206 2113 True 3151 3151 93.613000 1 2120 1 chr2B.!!$R1 2119
2 TraesCS2A01G221100 chr2D 194806555 194808681 2126 True 1013 1688 93.885667 1 2101 3 chr2D.!!$R2 2100
3 TraesCS2A01G221100 chr2D 101435133 101435860 727 True 946 946 90.110000 2419 3146 1 chr2D.!!$R1 727
4 TraesCS2A01G221100 chr1A 510343572 510344339 767 False 1269 1269 96.484000 2379 3146 1 chr1A.!!$F1 767
5 TraesCS2A01G221100 chr7D 201166077 201166781 704 False 953 953 91.064000 2442 3146 1 chr7D.!!$F3 704
6 TraesCS2A01G221100 chr7D 27209013 27209723 710 False 782 782 86.498000 2436 3146 1 chr7D.!!$F1 710
7 TraesCS2A01G221100 chr7D 109520421 109521073 652 False 763 763 87.786000 2493 3146 1 chr7D.!!$F2 653
8 TraesCS2A01G221100 chr7A 657680295 657681002 707 False 713 713 84.853000 2434 3145 1 chr7A.!!$F1 711
9 TraesCS2A01G221100 chr5D 420203894 420204613 719 True 712 712 84.509000 2423 3145 1 chr5D.!!$R1 722
10 TraesCS2A01G221100 chr3D 163882217 163882921 704 False 704 704 84.734000 2434 3145 1 chr3D.!!$F1 711
11 TraesCS2A01G221100 chr5B 190583087 190583795 708 True 673 673 83.780000 2436 3144 1 chr5B.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 1.078848 CGGCAGGAGGAAGGAAGTG 60.079 63.158 0.0 0.0 0.0 3.16 F
1184 1302 0.104409 ACTTTCTCCCTGTCCCTGGT 60.104 55.000 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 2071 0.457166 TAAACGGGATCGCGACACAG 60.457 55.0 35.09 10.89 40.63 3.66 R
2255 2380 0.174845 TTAGGGTCGTGCGATTGGAG 59.825 55.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 1.078848 CGGCAGGAGGAAGGAAGTG 60.079 63.158 0.00 0.00 0.00 3.16
219 220 1.925229 TTGTTTCTTGTTGCTGCTGC 58.075 45.000 8.89 8.89 40.20 5.25
226 227 3.292936 GTTGCTGCTGCTGGTGCT 61.293 61.111 17.00 0.00 40.48 4.40
243 244 9.402320 TGCTGGTGCTAAAAATCATTATACTTA 57.598 29.630 0.00 0.00 40.48 2.24
244 245 9.665264 GCTGGTGCTAAAAATCATTATACTTAC 57.335 33.333 0.00 0.00 36.03 2.34
361 433 8.391699 AGAAGTAGGCCTACATGATATACAGTA 58.608 37.037 37.94 0.71 38.48 2.74
362 434 7.941431 AGTAGGCCTACATGATATACAGTAC 57.059 40.000 37.94 13.70 38.48 2.73
473 547 5.618056 ATGTTTGTGTCTAGTGCATCTTG 57.382 39.130 0.00 0.00 0.00 3.02
494 568 1.632409 ACACCTCAGATGCTGGTCAAT 59.368 47.619 0.00 0.00 31.51 2.57
537 611 7.440198 TCAATCAGAGGCTTAGATAACATGAG 58.560 38.462 0.00 0.00 0.00 2.90
539 613 4.898265 TCAGAGGCTTAGATAACATGAGCT 59.102 41.667 0.00 0.00 33.96 4.09
568 642 6.774354 TTTGAAAGCATGCTGAGATTTTTC 57.226 33.333 23.48 18.78 0.00 2.29
782 887 9.231297 AGCATATCTACAGTGTTTTTATTGTGT 57.769 29.630 0.00 0.00 0.00 3.72
960 1066 5.852282 ACACAAACTAGGCTGATTTGTTT 57.148 34.783 21.45 15.67 42.43 2.83
1012 1123 0.482446 AAAGGGGTTGACTGCCATGA 59.518 50.000 0.00 0.00 0.00 3.07
1067 1184 3.051581 ACAGCCCTATCATTCTCCATGT 58.948 45.455 0.00 0.00 34.06 3.21
1079 1197 5.474532 TCATTCTCCATGTTTTCTCAAGTGG 59.525 40.000 0.00 0.00 34.06 4.00
1129 1247 1.022735 CACCTCTCATCTTGCATGGC 58.977 55.000 0.00 0.00 0.00 4.40
1131 1249 0.179065 CCTCTCATCTTGCATGGCGA 60.179 55.000 0.00 0.00 0.00 5.54
1132 1250 1.218763 CTCTCATCTTGCATGGCGAG 58.781 55.000 10.85 10.85 41.13 5.03
1177 1295 2.158623 TGTCATGCAACTTTCTCCCTGT 60.159 45.455 0.00 0.00 0.00 4.00
1178 1296 2.485814 GTCATGCAACTTTCTCCCTGTC 59.514 50.000 0.00 0.00 0.00 3.51
1179 1297 1.815003 CATGCAACTTTCTCCCTGTCC 59.185 52.381 0.00 0.00 0.00 4.02
1180 1298 0.110486 TGCAACTTTCTCCCTGTCCC 59.890 55.000 0.00 0.00 0.00 4.46
1181 1299 0.402121 GCAACTTTCTCCCTGTCCCT 59.598 55.000 0.00 0.00 0.00 4.20
1182 1300 1.884067 GCAACTTTCTCCCTGTCCCTG 60.884 57.143 0.00 0.00 0.00 4.45
1183 1301 1.068121 AACTTTCTCCCTGTCCCTGG 58.932 55.000 0.00 0.00 0.00 4.45
1184 1302 0.104409 ACTTTCTCCCTGTCCCTGGT 60.104 55.000 0.00 0.00 0.00 4.00
1185 1303 1.151413 ACTTTCTCCCTGTCCCTGGTA 59.849 52.381 0.00 0.00 0.00 3.25
1186 1304 2.225908 ACTTTCTCCCTGTCCCTGGTAT 60.226 50.000 0.00 0.00 0.00 2.73
1187 1305 3.013648 ACTTTCTCCCTGTCCCTGGTATA 59.986 47.826 0.00 0.00 0.00 1.47
1188 1306 3.330126 TTCTCCCTGTCCCTGGTATAG 57.670 52.381 0.00 0.00 0.00 1.31
1189 1307 2.224077 TCTCCCTGTCCCTGGTATAGT 58.776 52.381 0.00 0.00 0.00 2.12
1190 1308 2.091278 TCTCCCTGTCCCTGGTATAGTG 60.091 54.545 0.00 0.00 0.00 2.74
1222 1347 0.687354 CAGTACACTGCCCCTGTCTT 59.313 55.000 0.00 0.00 37.15 3.01
1234 1359 2.233431 CCCCTGTCTTCTCTCTTGTCAG 59.767 54.545 0.00 0.00 0.00 3.51
1250 1375 7.663081 TCTCTTGTCAGTAAATCTTGCTTCATT 59.337 33.333 0.00 0.00 0.00 2.57
1269 1394 4.935205 TCATTACCTTCCTCATTTGTGACG 59.065 41.667 0.00 0.00 0.00 4.35
1270 1395 2.185004 ACCTTCCTCATTTGTGACGG 57.815 50.000 0.00 0.00 0.00 4.79
1272 1397 2.289694 ACCTTCCTCATTTGTGACGGAG 60.290 50.000 0.00 0.00 0.00 4.63
1279 1404 1.737793 CATTTGTGACGGAGCCTAACC 59.262 52.381 0.00 0.00 0.00 2.85
1340 1465 1.594293 CCGAGCTTGTCAACGGTGT 60.594 57.895 0.00 0.00 40.42 4.16
1344 1469 1.525077 GCTTGTCAACGGTGTGGGA 60.525 57.895 0.00 0.00 0.00 4.37
1413 1538 1.558756 AGAGAACTGGAGGCCATCAAG 59.441 52.381 5.01 5.23 34.77 3.02
1416 1541 0.779997 AACTGGAGGCCATCAAGGTT 59.220 50.000 5.01 1.40 40.61 3.50
1538 1663 1.375652 CCAGTGTCTCCAGCAGCAG 60.376 63.158 0.00 0.00 0.00 4.24
1539 1664 2.033755 CAGTGTCTCCAGCAGCAGC 61.034 63.158 0.00 0.00 42.56 5.25
1540 1665 2.031616 GTGTCTCCAGCAGCAGCA 59.968 61.111 3.17 0.00 45.49 4.41
1692 1817 3.891977 AGAAGGCCAAGAAGAAAGGAAAC 59.108 43.478 5.01 0.00 0.00 2.78
1946 2071 1.222936 CCACCTGACTGCATCCCTC 59.777 63.158 0.00 0.00 0.00 4.30
2028 2153 5.007724 GGTAGTCTATGAAAAGCATTTCCCG 59.992 44.000 11.60 1.08 43.54 5.14
2113 2238 2.105124 GGAGTACTCCCTCCGTTCG 58.895 63.158 28.87 0.00 43.94 3.95
2117 2242 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2120 2245 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2121 2246 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2122 2247 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2123 2248 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2124 2249 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2125 2250 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2126 2251 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2127 2252 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
2128 2253 2.091588 CCGTTCGGAATTACTTGTCGTG 59.908 50.000 5.19 0.00 0.00 4.35
2129 2254 2.091588 CGTTCGGAATTACTTGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2130 2255 3.319755 GTTCGGAATTACTTGTCGTGGA 58.680 45.455 0.00 0.00 0.00 4.02
2131 2256 3.663995 TCGGAATTACTTGTCGTGGAA 57.336 42.857 0.00 0.00 0.00 3.53
2132 2257 3.992643 TCGGAATTACTTGTCGTGGAAA 58.007 40.909 0.00 0.00 0.00 3.13
2133 2258 4.571919 TCGGAATTACTTGTCGTGGAAAT 58.428 39.130 0.00 0.00 0.00 2.17
2134 2259 4.390603 TCGGAATTACTTGTCGTGGAAATG 59.609 41.667 0.00 0.00 0.00 2.32
2135 2260 4.436852 CGGAATTACTTGTCGTGGAAATGG 60.437 45.833 0.00 0.00 0.00 3.16
2136 2261 4.698304 GGAATTACTTGTCGTGGAAATGGA 59.302 41.667 0.00 0.00 0.00 3.41
2137 2262 5.357032 GGAATTACTTGTCGTGGAAATGGAT 59.643 40.000 0.00 0.00 0.00 3.41
2138 2263 5.818136 ATTACTTGTCGTGGAAATGGATG 57.182 39.130 0.00 0.00 0.00 3.51
2139 2264 3.140325 ACTTGTCGTGGAAATGGATGT 57.860 42.857 0.00 0.00 0.00 3.06
2140 2265 4.280436 ACTTGTCGTGGAAATGGATGTA 57.720 40.909 0.00 0.00 0.00 2.29
2141 2266 4.843728 ACTTGTCGTGGAAATGGATGTAT 58.156 39.130 0.00 0.00 0.00 2.29
2142 2267 4.876107 ACTTGTCGTGGAAATGGATGTATC 59.124 41.667 0.00 0.00 0.00 2.24
2143 2268 4.753516 TGTCGTGGAAATGGATGTATCT 57.246 40.909 0.00 0.00 0.00 1.98
2144 2269 5.862678 TGTCGTGGAAATGGATGTATCTA 57.137 39.130 0.00 0.00 0.00 1.98
2145 2270 5.842907 TGTCGTGGAAATGGATGTATCTAG 58.157 41.667 0.00 0.00 0.00 2.43
2146 2271 5.596772 TGTCGTGGAAATGGATGTATCTAGA 59.403 40.000 0.00 0.00 0.00 2.43
2147 2272 6.267699 TGTCGTGGAAATGGATGTATCTAGAT 59.732 38.462 10.73 10.73 0.00 1.98
2148 2273 6.587990 GTCGTGGAAATGGATGTATCTAGATG 59.412 42.308 15.79 0.00 0.00 2.90
2149 2274 6.267699 TCGTGGAAATGGATGTATCTAGATGT 59.732 38.462 15.79 1.25 0.00 3.06
2150 2275 7.450323 TCGTGGAAATGGATGTATCTAGATGTA 59.550 37.037 15.79 4.44 0.00 2.29
2151 2276 8.253810 CGTGGAAATGGATGTATCTAGATGTAT 58.746 37.037 15.79 9.11 0.00 2.29
2152 2277 9.950496 GTGGAAATGGATGTATCTAGATGTATT 57.050 33.333 15.79 4.32 0.00 1.89
2177 2302 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
2178 2303 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
2179 2304 7.361457 AGTTCTAGATACATCCATTTCCGAA 57.639 36.000 0.00 0.00 0.00 4.30
2180 2305 7.792032 AGTTCTAGATACATCCATTTCCGAAA 58.208 34.615 0.00 0.00 0.00 3.46
2181 2306 7.711339 AGTTCTAGATACATCCATTTCCGAAAC 59.289 37.037 0.00 0.00 0.00 2.78
2182 2307 7.119709 TCTAGATACATCCATTTCCGAAACA 57.880 36.000 0.00 0.00 0.00 2.83
2183 2308 7.561251 TCTAGATACATCCATTTCCGAAACAA 58.439 34.615 0.00 0.00 0.00 2.83
2184 2309 6.683974 AGATACATCCATTTCCGAAACAAG 57.316 37.500 0.00 0.00 0.00 3.16
2185 2310 6.180472 AGATACATCCATTTCCGAAACAAGT 58.820 36.000 0.00 0.00 0.00 3.16
2186 2311 7.335627 AGATACATCCATTTCCGAAACAAGTA 58.664 34.615 0.00 0.00 0.00 2.24
2187 2312 7.827236 AGATACATCCATTTCCGAAACAAGTAA 59.173 33.333 0.00 0.00 0.00 2.24
2188 2313 6.834168 ACATCCATTTCCGAAACAAGTAAT 57.166 33.333 0.00 0.00 0.00 1.89
2189 2314 7.227049 ACATCCATTTCCGAAACAAGTAATT 57.773 32.000 0.00 0.00 0.00 1.40
2190 2315 7.312899 ACATCCATTTCCGAAACAAGTAATTC 58.687 34.615 0.00 0.00 0.00 2.17
2191 2316 6.262193 TCCATTTCCGAAACAAGTAATTCC 57.738 37.500 0.00 0.00 0.00 3.01
2192 2317 5.092781 CCATTTCCGAAACAAGTAATTCCG 58.907 41.667 0.00 0.00 0.00 4.30
2193 2318 5.106475 CCATTTCCGAAACAAGTAATTCCGA 60.106 40.000 0.00 0.00 0.00 4.55
2194 2319 6.375377 CATTTCCGAAACAAGTAATTCCGAA 58.625 36.000 0.00 0.00 0.00 4.30
2195 2320 4.996062 TCCGAAACAAGTAATTCCGAAC 57.004 40.909 0.00 0.00 0.00 3.95
2196 2321 3.429543 TCCGAAACAAGTAATTCCGAACG 59.570 43.478 0.00 0.00 0.00 3.95
2197 2322 3.423907 CCGAAACAAGTAATTCCGAACGG 60.424 47.826 6.94 6.94 0.00 4.44
2198 2323 3.429543 CGAAACAAGTAATTCCGAACGGA 59.570 43.478 12.04 12.04 43.52 4.69
2199 2324 4.433805 CGAAACAAGTAATTCCGAACGGAG 60.434 45.833 15.34 5.60 46.06 4.63
2200 2325 2.968675 ACAAGTAATTCCGAACGGAGG 58.031 47.619 15.34 4.52 46.06 4.30
2201 2326 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2202 2327 0.828677 AGTAATTCCGAACGGAGGGG 59.171 55.000 15.34 0.00 46.06 4.79
2203 2328 0.179065 GTAATTCCGAACGGAGGGGG 60.179 60.000 15.34 0.00 46.06 5.40
2204 2329 0.618393 TAATTCCGAACGGAGGGGGT 60.618 55.000 15.34 4.31 46.06 4.95
2205 2330 0.618393 AATTCCGAACGGAGGGGGTA 60.618 55.000 15.34 1.05 46.06 3.69
2206 2331 1.047034 ATTCCGAACGGAGGGGGTAG 61.047 60.000 15.34 0.00 46.06 3.18
2207 2332 3.846430 CCGAACGGAGGGGGTAGC 61.846 72.222 7.53 0.00 37.50 3.58
2208 2333 3.072468 CGAACGGAGGGGGTAGCA 61.072 66.667 0.00 0.00 0.00 3.49
2209 2334 2.901042 GAACGGAGGGGGTAGCAG 59.099 66.667 0.00 0.00 0.00 4.24
2210 2335 1.684734 GAACGGAGGGGGTAGCAGA 60.685 63.158 0.00 0.00 0.00 4.26
2211 2336 1.003051 AACGGAGGGGGTAGCAGAT 59.997 57.895 0.00 0.00 0.00 2.90
2212 2337 0.263765 AACGGAGGGGGTAGCAGATA 59.736 55.000 0.00 0.00 0.00 1.98
2213 2338 0.263765 ACGGAGGGGGTAGCAGATAA 59.736 55.000 0.00 0.00 0.00 1.75
2214 2339 0.969894 CGGAGGGGGTAGCAGATAAG 59.030 60.000 0.00 0.00 0.00 1.73
2215 2340 1.480683 CGGAGGGGGTAGCAGATAAGA 60.481 57.143 0.00 0.00 0.00 2.10
2216 2341 1.972075 GGAGGGGGTAGCAGATAAGAC 59.028 57.143 0.00 0.00 0.00 3.01
2217 2342 2.426561 GGAGGGGGTAGCAGATAAGACT 60.427 54.545 0.00 0.00 0.00 3.24
2218 2343 2.894765 GAGGGGGTAGCAGATAAGACTC 59.105 54.545 0.00 0.00 0.00 3.36
2219 2344 1.972075 GGGGGTAGCAGATAAGACTCC 59.028 57.143 0.00 0.00 0.00 3.85
2220 2345 2.426561 GGGGGTAGCAGATAAGACTCCT 60.427 54.545 0.00 0.00 32.61 3.69
2221 2346 3.181420 GGGGGTAGCAGATAAGACTCCTA 60.181 52.174 0.00 0.00 32.61 2.94
2222 2347 4.083565 GGGGTAGCAGATAAGACTCCTAG 58.916 52.174 0.00 0.00 29.10 3.02
2223 2348 4.202588 GGGGTAGCAGATAAGACTCCTAGA 60.203 50.000 0.00 0.00 29.10 2.43
2224 2349 4.763279 GGGTAGCAGATAAGACTCCTAGAC 59.237 50.000 0.00 0.00 0.00 2.59
2225 2350 5.457052 GGGTAGCAGATAAGACTCCTAGACT 60.457 48.000 0.00 0.00 0.00 3.24
2226 2351 6.066032 GGTAGCAGATAAGACTCCTAGACTT 58.934 44.000 0.00 0.00 34.76 3.01
2227 2352 6.548251 GGTAGCAGATAAGACTCCTAGACTTT 59.452 42.308 0.00 0.00 32.79 2.66
2228 2353 7.068962 GGTAGCAGATAAGACTCCTAGACTTTT 59.931 40.741 0.00 0.00 32.79 2.27
2229 2354 6.872920 AGCAGATAAGACTCCTAGACTTTTG 58.127 40.000 0.00 0.00 32.79 2.44
2230 2355 6.665680 AGCAGATAAGACTCCTAGACTTTTGA 59.334 38.462 0.00 0.00 32.79 2.69
2231 2356 7.179338 AGCAGATAAGACTCCTAGACTTTTGAA 59.821 37.037 0.00 0.00 32.79 2.69
2232 2357 7.984617 GCAGATAAGACTCCTAGACTTTTGAAT 59.015 37.037 0.00 0.00 32.79 2.57
2233 2358 9.883142 CAGATAAGACTCCTAGACTTTTGAATT 57.117 33.333 0.00 0.00 32.79 2.17
2234 2359 9.883142 AGATAAGACTCCTAGACTTTTGAATTG 57.117 33.333 0.00 0.00 32.79 2.32
2235 2360 9.877178 GATAAGACTCCTAGACTTTTGAATTGA 57.123 33.333 0.00 0.00 32.79 2.57
2236 2361 9.883142 ATAAGACTCCTAGACTTTTGAATTGAG 57.117 33.333 0.00 0.00 32.79 3.02
2237 2362 7.309770 AGACTCCTAGACTTTTGAATTGAGT 57.690 36.000 0.00 0.00 33.56 3.41
2238 2363 7.740805 AGACTCCTAGACTTTTGAATTGAGTT 58.259 34.615 0.00 0.00 31.21 3.01
2239 2364 7.659390 AGACTCCTAGACTTTTGAATTGAGTTG 59.341 37.037 0.00 0.00 31.21 3.16
2240 2365 7.509546 ACTCCTAGACTTTTGAATTGAGTTGA 58.490 34.615 0.00 0.00 0.00 3.18
2241 2366 8.160106 ACTCCTAGACTTTTGAATTGAGTTGAT 58.840 33.333 0.00 0.00 0.00 2.57
2242 2367 8.327941 TCCTAGACTTTTGAATTGAGTTGATG 57.672 34.615 0.00 0.00 0.00 3.07
2243 2368 7.391554 TCCTAGACTTTTGAATTGAGTTGATGG 59.608 37.037 0.00 0.00 0.00 3.51
2244 2369 6.966534 AGACTTTTGAATTGAGTTGATGGT 57.033 33.333 0.00 0.00 0.00 3.55
2245 2370 6.974965 AGACTTTTGAATTGAGTTGATGGTC 58.025 36.000 0.00 0.00 0.00 4.02
2246 2371 6.774656 AGACTTTTGAATTGAGTTGATGGTCT 59.225 34.615 0.00 0.00 0.00 3.85
2247 2372 7.286316 AGACTTTTGAATTGAGTTGATGGTCTT 59.714 33.333 0.00 0.00 0.00 3.01
2248 2373 8.463930 ACTTTTGAATTGAGTTGATGGTCTTA 57.536 30.769 0.00 0.00 0.00 2.10
2249 2374 8.571336 ACTTTTGAATTGAGTTGATGGTCTTAG 58.429 33.333 0.00 0.00 0.00 2.18
2250 2375 7.452880 TTTGAATTGAGTTGATGGTCTTAGG 57.547 36.000 0.00 0.00 0.00 2.69
2251 2376 4.943705 TGAATTGAGTTGATGGTCTTAGGC 59.056 41.667 0.00 0.00 0.00 3.93
2252 2377 3.350219 TTGAGTTGATGGTCTTAGGCC 57.650 47.619 0.00 0.00 0.00 5.19
2253 2378 2.265367 TGAGTTGATGGTCTTAGGCCA 58.735 47.619 8.43 8.43 40.68 5.36
2254 2379 2.642311 TGAGTTGATGGTCTTAGGCCAA 59.358 45.455 10.48 0.00 39.72 4.52
2255 2380 3.010420 GAGTTGATGGTCTTAGGCCAAC 58.990 50.000 10.48 8.10 39.72 3.77
2256 2381 2.644798 AGTTGATGGTCTTAGGCCAACT 59.355 45.455 10.48 6.23 39.72 3.16
2257 2382 3.010420 GTTGATGGTCTTAGGCCAACTC 58.990 50.000 10.48 4.40 39.72 3.01
2258 2383 1.559682 TGATGGTCTTAGGCCAACTCC 59.440 52.381 10.48 0.30 39.72 3.85
2259 2384 1.559682 GATGGTCTTAGGCCAACTCCA 59.440 52.381 10.48 7.36 39.72 3.86
2260 2385 1.440618 TGGTCTTAGGCCAACTCCAA 58.559 50.000 1.73 0.00 32.29 3.53
2261 2386 1.992557 TGGTCTTAGGCCAACTCCAAT 59.007 47.619 1.73 0.00 32.29 3.16
2262 2387 2.026262 TGGTCTTAGGCCAACTCCAATC 60.026 50.000 1.73 0.00 32.29 2.67
2263 2388 2.280628 GTCTTAGGCCAACTCCAATCG 58.719 52.381 5.01 0.00 0.00 3.34
2264 2389 1.017387 CTTAGGCCAACTCCAATCGC 58.983 55.000 5.01 0.00 0.00 4.58
2265 2390 0.326595 TTAGGCCAACTCCAATCGCA 59.673 50.000 5.01 0.00 0.00 5.10
2266 2391 0.392461 TAGGCCAACTCCAATCGCAC 60.392 55.000 5.01 0.00 0.00 5.34
2267 2392 2.480555 GCCAACTCCAATCGCACG 59.519 61.111 0.00 0.00 0.00 5.34
2268 2393 2.032634 GCCAACTCCAATCGCACGA 61.033 57.895 0.00 0.00 0.00 4.35
2269 2394 1.787847 CCAACTCCAATCGCACGAC 59.212 57.895 0.00 0.00 0.00 4.34
2270 2395 1.635663 CCAACTCCAATCGCACGACC 61.636 60.000 0.00 0.00 0.00 4.79
2271 2396 1.375523 AACTCCAATCGCACGACCC 60.376 57.895 0.00 0.00 0.00 4.46
2272 2397 1.827399 AACTCCAATCGCACGACCCT 61.827 55.000 0.00 0.00 0.00 4.34
2273 2398 0.968901 ACTCCAATCGCACGACCCTA 60.969 55.000 0.00 0.00 0.00 3.53
2274 2399 0.174845 CTCCAATCGCACGACCCTAA 59.825 55.000 0.00 0.00 0.00 2.69
2275 2400 0.609151 TCCAATCGCACGACCCTAAA 59.391 50.000 0.00 0.00 0.00 1.85
2276 2401 0.725117 CCAATCGCACGACCCTAAAC 59.275 55.000 0.00 0.00 0.00 2.01
2277 2402 0.725117 CAATCGCACGACCCTAAACC 59.275 55.000 0.00 0.00 0.00 3.27
2278 2403 0.322322 AATCGCACGACCCTAAACCA 59.678 50.000 0.00 0.00 0.00 3.67
2279 2404 0.390735 ATCGCACGACCCTAAACCAC 60.391 55.000 0.00 0.00 0.00 4.16
2280 2405 2.377310 CGCACGACCCTAAACCACG 61.377 63.158 0.00 0.00 0.00 4.94
2281 2406 2.030958 GCACGACCCTAAACCACGG 61.031 63.158 0.00 0.00 0.00 4.94
2282 2407 1.667151 CACGACCCTAAACCACGGA 59.333 57.895 0.00 0.00 0.00 4.69
2283 2408 0.668401 CACGACCCTAAACCACGGAC 60.668 60.000 0.00 0.00 0.00 4.79
2284 2409 1.444895 CGACCCTAAACCACGGACG 60.445 63.158 0.00 0.00 0.00 4.79
2285 2410 1.667722 GACCCTAAACCACGGACGT 59.332 57.895 0.00 0.00 0.00 4.34
2286 2411 0.389037 GACCCTAAACCACGGACGTC 60.389 60.000 7.13 7.13 0.00 4.34
2287 2412 1.079612 CCCTAAACCACGGACGTCC 60.080 63.158 25.28 25.28 0.00 4.79
2288 2413 1.667151 CCTAAACCACGGACGTCCA 59.333 57.895 32.80 11.73 35.14 4.02
2289 2414 0.248289 CCTAAACCACGGACGTCCAT 59.752 55.000 32.80 17.77 35.14 3.41
2290 2415 1.338389 CCTAAACCACGGACGTCCATT 60.338 52.381 32.80 17.29 35.14 3.16
2291 2416 2.419667 CTAAACCACGGACGTCCATTT 58.580 47.619 32.80 25.48 35.14 2.32
2292 2417 1.682740 AAACCACGGACGTCCATTTT 58.317 45.000 32.80 21.07 35.14 1.82
2293 2418 2.547299 AACCACGGACGTCCATTTTA 57.453 45.000 32.80 0.00 35.14 1.52
2294 2419 2.773993 ACCACGGACGTCCATTTTAT 57.226 45.000 32.80 11.02 35.14 1.40
2295 2420 3.062122 ACCACGGACGTCCATTTTATT 57.938 42.857 32.80 8.19 35.14 1.40
2296 2421 3.004862 ACCACGGACGTCCATTTTATTC 58.995 45.455 32.80 4.00 35.14 1.75
2297 2422 2.029970 CCACGGACGTCCATTTTATTCG 59.970 50.000 32.80 17.87 35.14 3.34
2298 2423 2.029970 CACGGACGTCCATTTTATTCGG 59.970 50.000 32.80 15.34 35.14 4.30
2299 2424 2.094078 ACGGACGTCCATTTTATTCGGA 60.094 45.455 32.80 0.00 35.14 4.55
2300 2425 3.128349 CGGACGTCCATTTTATTCGGAT 58.872 45.455 32.80 0.00 35.14 4.18
2301 2426 3.558418 CGGACGTCCATTTTATTCGGATT 59.442 43.478 32.80 0.00 35.14 3.01
2302 2427 4.034742 CGGACGTCCATTTTATTCGGATTT 59.965 41.667 32.80 0.00 35.14 2.17
2303 2428 5.448089 CGGACGTCCATTTTATTCGGATTTT 60.448 40.000 32.80 0.00 35.14 1.82
2304 2429 5.741982 GGACGTCCATTTTATTCGGATTTTG 59.258 40.000 29.75 0.00 35.64 2.44
2305 2430 6.262193 ACGTCCATTTTATTCGGATTTTGT 57.738 33.333 0.00 0.00 0.00 2.83
2306 2431 6.683715 ACGTCCATTTTATTCGGATTTTGTT 58.316 32.000 0.00 0.00 0.00 2.83
2307 2432 7.149307 ACGTCCATTTTATTCGGATTTTGTTT 58.851 30.769 0.00 0.00 0.00 2.83
2308 2433 7.115663 ACGTCCATTTTATTCGGATTTTGTTTG 59.884 33.333 0.00 0.00 0.00 2.93
2309 2434 7.115663 CGTCCATTTTATTCGGATTTTGTTTGT 59.884 33.333 0.00 0.00 0.00 2.83
2310 2435 8.769891 GTCCATTTTATTCGGATTTTGTTTGTT 58.230 29.630 0.00 0.00 0.00 2.83
2311 2436 9.331282 TCCATTTTATTCGGATTTTGTTTGTTT 57.669 25.926 0.00 0.00 0.00 2.83
2312 2437 9.592720 CCATTTTATTCGGATTTTGTTTGTTTC 57.407 29.630 0.00 0.00 0.00 2.78
2313 2438 9.300441 CATTTTATTCGGATTTTGTTTGTTTCG 57.700 29.630 0.00 0.00 0.00 3.46
2314 2439 6.994868 TTATTCGGATTTTGTTTGTTTCGG 57.005 33.333 0.00 0.00 0.00 4.30
2315 2440 3.357166 TCGGATTTTGTTTGTTTCGGG 57.643 42.857 0.00 0.00 0.00 5.14
2316 2441 2.950309 TCGGATTTTGTTTGTTTCGGGA 59.050 40.909 0.00 0.00 0.00 5.14
2317 2442 3.570550 TCGGATTTTGTTTGTTTCGGGAT 59.429 39.130 0.00 0.00 0.00 3.85
2318 2443 3.672867 CGGATTTTGTTTGTTTCGGGATG 59.327 43.478 0.00 0.00 0.00 3.51
2319 2444 3.993736 GGATTTTGTTTGTTTCGGGATGG 59.006 43.478 0.00 0.00 0.00 3.51
2320 2445 2.517650 TTTGTTTGTTTCGGGATGGC 57.482 45.000 0.00 0.00 0.00 4.40
2321 2446 1.403814 TTGTTTGTTTCGGGATGGCA 58.596 45.000 0.00 0.00 0.00 4.92
2322 2447 1.403814 TGTTTGTTTCGGGATGGCAA 58.596 45.000 0.00 0.00 0.00 4.52
2323 2448 1.967066 TGTTTGTTTCGGGATGGCAAT 59.033 42.857 0.00 0.00 0.00 3.56
2324 2449 2.288702 TGTTTGTTTCGGGATGGCAATG 60.289 45.455 0.00 0.00 0.00 2.82
2325 2450 1.916506 TTGTTTCGGGATGGCAATGA 58.083 45.000 0.00 0.00 0.00 2.57
2326 2451 1.462616 TGTTTCGGGATGGCAATGAG 58.537 50.000 0.00 0.00 0.00 2.90
2327 2452 0.740737 GTTTCGGGATGGCAATGAGG 59.259 55.000 0.00 0.00 0.00 3.86
2328 2453 1.037030 TTTCGGGATGGCAATGAGGC 61.037 55.000 0.00 0.00 44.50 4.70
2347 2472 4.026356 GGCCATATCTGCCTAGATTTGT 57.974 45.455 0.00 0.00 45.70 2.83
2348 2473 3.755378 GGCCATATCTGCCTAGATTTGTG 59.245 47.826 0.00 0.00 45.70 3.33
2349 2474 4.392940 GCCATATCTGCCTAGATTTGTGT 58.607 43.478 0.00 0.00 40.79 3.72
2350 2475 4.823989 GCCATATCTGCCTAGATTTGTGTT 59.176 41.667 0.00 0.00 40.79 3.32
2351 2476 5.300286 GCCATATCTGCCTAGATTTGTGTTT 59.700 40.000 0.00 0.00 40.79 2.83
2352 2477 6.732154 CCATATCTGCCTAGATTTGTGTTTG 58.268 40.000 0.00 0.00 40.79 2.93
2353 2478 4.708726 ATCTGCCTAGATTTGTGTTTGC 57.291 40.909 0.00 0.00 40.79 3.68
2354 2479 2.483877 TCTGCCTAGATTTGTGTTTGCG 59.516 45.455 0.00 0.00 0.00 4.85
2355 2480 1.068610 TGCCTAGATTTGTGTTTGCGC 60.069 47.619 0.00 0.00 0.00 6.09
2356 2481 1.732405 GCCTAGATTTGTGTTTGCGCC 60.732 52.381 4.18 0.00 0.00 6.53
2357 2482 1.465689 CCTAGATTTGTGTTTGCGCCG 60.466 52.381 4.18 0.00 0.00 6.46
2358 2483 0.519519 TAGATTTGTGTTTGCGCCGG 59.480 50.000 4.18 0.00 0.00 6.13
2359 2484 2.355718 ATTTGTGTTTGCGCCGGC 60.356 55.556 19.07 19.07 40.52 6.13
2360 2485 3.857109 ATTTGTGTTTGCGCCGGCC 62.857 57.895 23.46 14.70 38.85 6.13
2590 2722 0.679505 ACTGCCGAGAGTACAAGCAA 59.320 50.000 0.00 0.00 32.14 3.91
2799 2931 5.830912 GAGATCACTCTCCACAGTTCTATG 58.169 45.833 0.00 0.00 41.86 2.23
2858 2990 8.160106 AGATTCAGATTTACCACAGAAAAGACT 58.840 33.333 0.00 0.00 0.00 3.24
3118 3251 5.459107 ACATCACGAATGCGACTAAATAGAC 59.541 40.000 0.00 0.00 39.12 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 1.272490 GGCCAAAGCAAAGAACCTACC 59.728 52.381 0.00 0.00 42.56 3.18
261 262 5.165961 TGTTATCCCCTTTCAGAGAAGTG 57.834 43.478 0.00 0.00 0.00 3.16
361 433 3.780294 TGATGCCTACCTTTAGACCATGT 59.220 43.478 0.00 0.00 0.00 3.21
362 434 4.141620 ACTGATGCCTACCTTTAGACCATG 60.142 45.833 0.00 0.00 0.00 3.66
394 466 6.209391 CCTTCTTTTCTGCCTTAATTTCCTCA 59.791 38.462 0.00 0.00 0.00 3.86
473 547 0.610174 TGACCAGCATCTGAGGTGTC 59.390 55.000 0.00 0.00 35.36 3.67
537 611 5.883661 TCAGCATGCTTTCAAAAGTATAGC 58.116 37.500 19.98 10.86 38.95 2.97
539 613 7.870509 ATCTCAGCATGCTTTCAAAAGTATA 57.129 32.000 19.98 0.00 38.95 1.47
568 642 9.743057 TGTTGACAAACAATTACAAGGATTAAG 57.257 29.630 0.00 0.00 43.32 1.85
648 753 4.696402 CGACAGTCTGAAACTAGTAGGAGT 59.304 45.833 6.91 0.00 36.07 3.85
649 754 4.095185 CCGACAGTCTGAAACTAGTAGGAG 59.905 50.000 6.91 0.00 35.65 3.69
650 755 4.008330 CCGACAGTCTGAAACTAGTAGGA 58.992 47.826 6.91 0.00 35.65 2.94
651 756 3.757493 ACCGACAGTCTGAAACTAGTAGG 59.243 47.826 6.91 0.00 37.57 3.18
652 757 4.724303 CACCGACAGTCTGAAACTAGTAG 58.276 47.826 6.91 0.00 36.07 2.57
653 758 3.057736 GCACCGACAGTCTGAAACTAGTA 60.058 47.826 6.91 0.00 36.07 1.82
780 885 7.982354 TCACATCATGTACCAATACGATTTACA 59.018 33.333 0.00 0.00 33.60 2.41
782 887 8.201464 AGTCACATCATGTACCAATACGATTTA 58.799 33.333 0.00 0.00 33.60 1.40
904 1010 4.042809 AGAGTTATCATGTCCACCCAACAA 59.957 41.667 0.00 0.00 0.00 2.83
939 1045 6.019640 CACAAAACAAATCAGCCTAGTTTGTG 60.020 38.462 8.64 10.45 43.14 3.33
1012 1123 3.115390 ACTAGGGGAGTAACATGCATGT 58.885 45.455 26.61 26.61 44.20 3.21
1067 1184 4.151121 TCCATGATTGCCACTTGAGAAAA 58.849 39.130 0.00 0.00 0.00 2.29
1079 1197 1.133790 GACACTTGCCTCCATGATTGC 59.866 52.381 0.00 0.00 0.00 3.56
1129 1247 4.637534 AGGATGAAAATCATGGTGTTCTCG 59.362 41.667 10.27 0.00 37.20 4.04
1131 1249 6.725364 ACTAGGATGAAAATCATGGTGTTCT 58.275 36.000 10.27 0.00 37.20 3.01
1132 1250 7.094205 ACAACTAGGATGAAAATCATGGTGTTC 60.094 37.037 1.52 1.52 37.20 3.18
1177 1295 4.172807 AGGTGAAAACACTATACCAGGGA 58.827 43.478 0.00 0.00 33.88 4.20
1178 1296 4.569719 AGGTGAAAACACTATACCAGGG 57.430 45.455 0.00 0.00 33.88 4.45
1179 1297 5.335661 GCAAAGGTGAAAACACTATACCAGG 60.336 44.000 0.00 0.00 33.88 4.45
1180 1298 5.240623 TGCAAAGGTGAAAACACTATACCAG 59.759 40.000 0.00 0.00 33.88 4.00
1181 1299 5.133941 TGCAAAGGTGAAAACACTATACCA 58.866 37.500 0.00 0.00 33.88 3.25
1182 1300 5.240844 ACTGCAAAGGTGAAAACACTATACC 59.759 40.000 0.00 0.00 0.00 2.73
1183 1301 6.313744 ACTGCAAAGGTGAAAACACTATAC 57.686 37.500 0.00 0.00 0.00 1.47
1184 1302 6.993308 TGTACTGCAAAGGTGAAAACACTATA 59.007 34.615 0.00 0.00 0.00 1.31
1185 1303 5.825679 TGTACTGCAAAGGTGAAAACACTAT 59.174 36.000 0.00 0.00 0.00 2.12
1186 1304 5.065474 GTGTACTGCAAAGGTGAAAACACTA 59.935 40.000 0.00 0.00 33.64 2.74
1187 1305 4.013728 TGTACTGCAAAGGTGAAAACACT 58.986 39.130 0.00 0.00 0.00 3.55
1188 1306 4.102649 GTGTACTGCAAAGGTGAAAACAC 58.897 43.478 0.00 0.00 0.00 3.32
1189 1307 4.013728 AGTGTACTGCAAAGGTGAAAACA 58.986 39.130 0.00 0.00 0.00 2.83
1190 1308 4.351192 CAGTGTACTGCAAAGGTGAAAAC 58.649 43.478 0.00 0.00 37.15 2.43
1222 1347 6.352016 AGCAAGATTTACTGACAAGAGAGA 57.648 37.500 0.00 0.00 0.00 3.10
1234 1359 7.336931 TGAGGAAGGTAATGAAGCAAGATTTAC 59.663 37.037 0.00 0.00 0.00 2.01
1250 1375 2.901192 TCCGTCACAAATGAGGAAGGTA 59.099 45.455 0.00 0.00 42.26 3.08
1269 1394 1.907255 ACTGGTAACTGGTTAGGCTCC 59.093 52.381 0.00 0.00 40.36 4.70
1270 1395 2.832733 AGACTGGTAACTGGTTAGGCTC 59.167 50.000 0.00 0.00 40.36 4.70
1272 1397 2.832733 AGAGACTGGTAACTGGTTAGGC 59.167 50.000 0.00 0.00 40.36 3.93
1279 1404 7.378966 TGTTTATGAGAAGAGACTGGTAACTG 58.621 38.462 0.00 0.00 42.06 3.16
1340 1465 2.045045 CTTTGATGGCGCCTCCCA 60.045 61.111 29.70 19.12 39.65 4.37
1344 1469 2.361610 CCCACTTTGATGGCGCCT 60.362 61.111 29.70 13.55 38.55 5.52
1538 1663 2.490217 CAGCTCTGCCATTGCTGC 59.510 61.111 6.21 0.00 45.76 5.25
1540 1665 1.378250 GGTCAGCTCTGCCATTGCT 60.378 57.895 0.00 0.00 38.71 3.91
1801 1926 4.395542 AGCAGCTTTGATTTCAGTCATCTC 59.604 41.667 0.00 0.00 0.00 2.75
1829 1954 2.989824 AAAGGGCAGCAGCAGCAG 60.990 61.111 12.41 0.00 45.49 4.24
1832 1957 2.035312 AGGAAAGGGCAGCAGCAG 59.965 61.111 2.65 0.00 44.61 4.24
1833 1958 2.282674 CAGGAAAGGGCAGCAGCA 60.283 61.111 2.65 0.00 44.61 4.41
1834 1959 3.066814 CCAGGAAAGGGCAGCAGC 61.067 66.667 0.00 0.00 41.10 5.25
1835 1960 1.378250 CTCCAGGAAAGGGCAGCAG 60.378 63.158 0.00 0.00 0.00 4.24
1946 2071 0.457166 TAAACGGGATCGCGACACAG 60.457 55.000 35.09 10.89 40.63 3.66
2028 2153 6.369890 TGACAATTTGACATCTAGCTTCTGAC 59.630 38.462 2.79 0.00 0.00 3.51
2107 2232 2.091588 CACGACAAGTAATTCCGAACGG 59.908 50.000 6.94 6.94 0.00 4.44
2113 2238 4.698304 TCCATTTCCACGACAAGTAATTCC 59.302 41.667 0.00 0.00 0.00 3.01
2117 2242 4.647611 ACATCCATTTCCACGACAAGTAA 58.352 39.130 0.00 0.00 0.00 2.24
2120 2245 5.118990 AGATACATCCATTTCCACGACAAG 58.881 41.667 0.00 0.00 0.00 3.16
2121 2246 5.097742 AGATACATCCATTTCCACGACAA 57.902 39.130 0.00 0.00 0.00 3.18
2122 2247 4.753516 AGATACATCCATTTCCACGACA 57.246 40.909 0.00 0.00 0.00 4.35
2123 2248 6.085555 TCTAGATACATCCATTTCCACGAC 57.914 41.667 0.00 0.00 0.00 4.34
2124 2249 6.267699 ACATCTAGATACATCCATTTCCACGA 59.732 38.462 4.54 0.00 0.00 4.35
2125 2250 6.459066 ACATCTAGATACATCCATTTCCACG 58.541 40.000 4.54 0.00 0.00 4.94
2126 2251 9.950496 AATACATCTAGATACATCCATTTCCAC 57.050 33.333 4.54 0.00 0.00 4.02
2151 2276 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
2152 2277 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
2153 2278 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
2154 2279 8.473358 TTCGGAAATGGATGTATCTAGAACTA 57.527 34.615 0.00 0.00 0.00 2.24
2155 2280 6.978674 TCGGAAATGGATGTATCTAGAACT 57.021 37.500 0.00 0.00 0.00 3.01
2156 2281 7.494625 TGTTTCGGAAATGGATGTATCTAGAAC 59.505 37.037 6.43 0.00 0.00 3.01
2157 2282 7.561251 TGTTTCGGAAATGGATGTATCTAGAA 58.439 34.615 6.43 0.00 0.00 2.10
2158 2283 7.119709 TGTTTCGGAAATGGATGTATCTAGA 57.880 36.000 6.43 0.00 0.00 2.43
2159 2284 7.495934 ACTTGTTTCGGAAATGGATGTATCTAG 59.504 37.037 6.43 0.24 0.00 2.43
2160 2285 7.335627 ACTTGTTTCGGAAATGGATGTATCTA 58.664 34.615 6.43 0.00 0.00 1.98
2161 2286 6.180472 ACTTGTTTCGGAAATGGATGTATCT 58.820 36.000 6.43 0.00 0.00 1.98
2162 2287 6.436843 ACTTGTTTCGGAAATGGATGTATC 57.563 37.500 6.43 0.00 0.00 2.24
2163 2288 7.931578 TTACTTGTTTCGGAAATGGATGTAT 57.068 32.000 6.43 0.00 0.00 2.29
2164 2289 7.931578 ATTACTTGTTTCGGAAATGGATGTA 57.068 32.000 6.43 4.67 0.00 2.29
2165 2290 6.834168 ATTACTTGTTTCGGAAATGGATGT 57.166 33.333 6.43 5.48 0.00 3.06
2166 2291 6.751888 GGAATTACTTGTTTCGGAAATGGATG 59.248 38.462 6.43 0.23 0.00 3.51
2167 2292 6.404293 CGGAATTACTTGTTTCGGAAATGGAT 60.404 38.462 6.43 0.00 0.00 3.41
2168 2293 5.106475 CGGAATTACTTGTTTCGGAAATGGA 60.106 40.000 6.43 0.00 0.00 3.41
2169 2294 5.092781 CGGAATTACTTGTTTCGGAAATGG 58.907 41.667 6.43 3.13 0.00 3.16
2170 2295 5.933790 TCGGAATTACTTGTTTCGGAAATG 58.066 37.500 6.43 3.45 30.99 2.32
2171 2296 6.376177 GTTCGGAATTACTTGTTTCGGAAAT 58.624 36.000 6.43 0.00 40.53 2.17
2172 2297 5.558653 CGTTCGGAATTACTTGTTTCGGAAA 60.559 40.000 0.00 0.00 40.53 3.13
2173 2298 4.084433 CGTTCGGAATTACTTGTTTCGGAA 60.084 41.667 0.00 0.00 38.24 4.30
2174 2299 3.429543 CGTTCGGAATTACTTGTTTCGGA 59.570 43.478 0.00 0.00 31.74 4.55
2175 2300 3.423907 CCGTTCGGAATTACTTGTTTCGG 60.424 47.826 5.19 0.00 0.00 4.30
2176 2301 3.429543 TCCGTTCGGAATTACTTGTTTCG 59.570 43.478 11.66 0.00 0.00 3.46
2177 2302 4.142966 CCTCCGTTCGGAATTACTTGTTTC 60.143 45.833 14.79 0.00 33.41 2.78
2178 2303 3.749609 CCTCCGTTCGGAATTACTTGTTT 59.250 43.478 14.79 0.00 33.41 2.83
2179 2304 3.332034 CCTCCGTTCGGAATTACTTGTT 58.668 45.455 14.79 0.00 33.41 2.83
2180 2305 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2181 2306 2.277084 CCCTCCGTTCGGAATTACTTG 58.723 52.381 14.79 1.97 33.41 3.16
2182 2307 1.208776 CCCCTCCGTTCGGAATTACTT 59.791 52.381 14.79 0.00 33.41 2.24
2183 2308 0.828677 CCCCTCCGTTCGGAATTACT 59.171 55.000 14.79 0.00 33.41 2.24
2184 2309 0.179065 CCCCCTCCGTTCGGAATTAC 60.179 60.000 14.79 0.00 33.41 1.89
2185 2310 0.618393 ACCCCCTCCGTTCGGAATTA 60.618 55.000 14.79 0.00 33.41 1.40
2186 2311 0.618393 TACCCCCTCCGTTCGGAATT 60.618 55.000 14.79 1.26 33.41 2.17
2187 2312 1.002017 TACCCCCTCCGTTCGGAAT 59.998 57.895 14.79 2.09 33.41 3.01
2188 2313 1.683365 CTACCCCCTCCGTTCGGAA 60.683 63.158 14.79 0.00 33.41 4.30
2189 2314 2.043652 CTACCCCCTCCGTTCGGA 60.044 66.667 13.34 13.34 0.00 4.55
2190 2315 3.846430 GCTACCCCCTCCGTTCGG 61.846 72.222 4.74 4.74 0.00 4.30
2191 2316 3.072468 TGCTACCCCCTCCGTTCG 61.072 66.667 0.00 0.00 0.00 3.95
2192 2317 1.049289 ATCTGCTACCCCCTCCGTTC 61.049 60.000 0.00 0.00 0.00 3.95
2193 2318 0.263765 TATCTGCTACCCCCTCCGTT 59.736 55.000 0.00 0.00 0.00 4.44
2194 2319 0.263765 TTATCTGCTACCCCCTCCGT 59.736 55.000 0.00 0.00 0.00 4.69
2195 2320 0.969894 CTTATCTGCTACCCCCTCCG 59.030 60.000 0.00 0.00 0.00 4.63
2196 2321 1.972075 GTCTTATCTGCTACCCCCTCC 59.028 57.143 0.00 0.00 0.00 4.30
2197 2322 2.894765 GAGTCTTATCTGCTACCCCCTC 59.105 54.545 0.00 0.00 0.00 4.30
2198 2323 2.426561 GGAGTCTTATCTGCTACCCCCT 60.427 54.545 0.00 0.00 0.00 4.79
2199 2324 1.972075 GGAGTCTTATCTGCTACCCCC 59.028 57.143 0.00 0.00 0.00 5.40
2200 2325 2.965562 AGGAGTCTTATCTGCTACCCC 58.034 52.381 0.00 0.00 34.50 4.95
2201 2326 4.763279 GTCTAGGAGTCTTATCTGCTACCC 59.237 50.000 0.00 0.00 37.33 3.69
2202 2327 5.627135 AGTCTAGGAGTCTTATCTGCTACC 58.373 45.833 0.00 0.00 37.33 3.18
2203 2328 7.576861 AAAGTCTAGGAGTCTTATCTGCTAC 57.423 40.000 0.00 0.00 37.33 3.58
2204 2329 7.834681 TCAAAAGTCTAGGAGTCTTATCTGCTA 59.165 37.037 0.00 0.00 37.33 3.49
2205 2330 6.665680 TCAAAAGTCTAGGAGTCTTATCTGCT 59.334 38.462 0.00 0.00 39.35 4.24
2206 2331 6.868622 TCAAAAGTCTAGGAGTCTTATCTGC 58.131 40.000 0.00 0.00 0.00 4.26
2207 2332 9.883142 AATTCAAAAGTCTAGGAGTCTTATCTG 57.117 33.333 0.00 0.00 0.00 2.90
2208 2333 9.883142 CAATTCAAAAGTCTAGGAGTCTTATCT 57.117 33.333 0.00 0.00 0.00 1.98
2209 2334 9.877178 TCAATTCAAAAGTCTAGGAGTCTTATC 57.123 33.333 0.00 0.00 0.00 1.75
2210 2335 9.883142 CTCAATTCAAAAGTCTAGGAGTCTTAT 57.117 33.333 0.00 0.00 0.00 1.73
2211 2336 8.871125 ACTCAATTCAAAAGTCTAGGAGTCTTA 58.129 33.333 0.00 0.00 0.00 2.10
2212 2337 7.740805 ACTCAATTCAAAAGTCTAGGAGTCTT 58.259 34.615 0.00 0.00 0.00 3.01
2213 2338 7.309770 ACTCAATTCAAAAGTCTAGGAGTCT 57.690 36.000 0.00 0.00 0.00 3.24
2214 2339 7.657761 TCAACTCAATTCAAAAGTCTAGGAGTC 59.342 37.037 0.00 0.00 32.39 3.36
2215 2340 7.509546 TCAACTCAATTCAAAAGTCTAGGAGT 58.490 34.615 0.00 0.00 34.81 3.85
2216 2341 7.969536 TCAACTCAATTCAAAAGTCTAGGAG 57.030 36.000 0.00 0.00 0.00 3.69
2217 2342 7.391554 CCATCAACTCAATTCAAAAGTCTAGGA 59.608 37.037 0.00 0.00 0.00 2.94
2218 2343 7.175641 ACCATCAACTCAATTCAAAAGTCTAGG 59.824 37.037 0.00 0.00 0.00 3.02
2219 2344 8.103948 ACCATCAACTCAATTCAAAAGTCTAG 57.896 34.615 0.00 0.00 0.00 2.43
2220 2345 7.939039 AGACCATCAACTCAATTCAAAAGTCTA 59.061 33.333 0.00 0.00 0.00 2.59
2221 2346 6.774656 AGACCATCAACTCAATTCAAAAGTCT 59.225 34.615 0.00 0.00 0.00 3.24
2222 2347 6.974965 AGACCATCAACTCAATTCAAAAGTC 58.025 36.000 0.00 0.00 0.00 3.01
2223 2348 6.966534 AGACCATCAACTCAATTCAAAAGT 57.033 33.333 0.00 0.00 0.00 2.66
2224 2349 8.025445 CCTAAGACCATCAACTCAATTCAAAAG 58.975 37.037 0.00 0.00 0.00 2.27
2225 2350 7.523709 GCCTAAGACCATCAACTCAATTCAAAA 60.524 37.037 0.00 0.00 0.00 2.44
2226 2351 6.071952 GCCTAAGACCATCAACTCAATTCAAA 60.072 38.462 0.00 0.00 0.00 2.69
2227 2352 5.415701 GCCTAAGACCATCAACTCAATTCAA 59.584 40.000 0.00 0.00 0.00 2.69
2228 2353 4.943705 GCCTAAGACCATCAACTCAATTCA 59.056 41.667 0.00 0.00 0.00 2.57
2229 2354 4.336713 GGCCTAAGACCATCAACTCAATTC 59.663 45.833 0.00 0.00 0.00 2.17
2230 2355 4.263905 TGGCCTAAGACCATCAACTCAATT 60.264 41.667 3.32 0.00 30.29 2.32
2231 2356 3.266772 TGGCCTAAGACCATCAACTCAAT 59.733 43.478 3.32 0.00 30.29 2.57
2232 2357 2.642311 TGGCCTAAGACCATCAACTCAA 59.358 45.455 3.32 0.00 30.29 3.02
2233 2358 2.265367 TGGCCTAAGACCATCAACTCA 58.735 47.619 3.32 0.00 30.29 3.41
2234 2359 3.010420 GTTGGCCTAAGACCATCAACTC 58.990 50.000 3.32 0.00 36.96 3.01
2235 2360 2.644798 AGTTGGCCTAAGACCATCAACT 59.355 45.455 3.32 0.00 39.63 3.16
2236 2361 3.010420 GAGTTGGCCTAAGACCATCAAC 58.990 50.000 3.32 0.00 36.96 3.18
2237 2362 2.026262 GGAGTTGGCCTAAGACCATCAA 60.026 50.000 3.32 0.00 36.96 2.57
2238 2363 1.559682 GGAGTTGGCCTAAGACCATCA 59.440 52.381 3.32 0.00 36.96 3.07
2239 2364 1.559682 TGGAGTTGGCCTAAGACCATC 59.440 52.381 3.32 0.00 36.96 3.51
2240 2365 1.668826 TGGAGTTGGCCTAAGACCAT 58.331 50.000 3.32 0.00 36.96 3.55
2241 2366 1.440618 TTGGAGTTGGCCTAAGACCA 58.559 50.000 3.32 4.20 34.65 4.02
2242 2367 2.644676 GATTGGAGTTGGCCTAAGACC 58.355 52.381 3.32 1.34 0.00 3.85
2243 2368 2.280628 CGATTGGAGTTGGCCTAAGAC 58.719 52.381 3.32 0.00 0.00 3.01
2244 2369 1.406887 GCGATTGGAGTTGGCCTAAGA 60.407 52.381 3.32 0.00 0.00 2.10
2245 2370 1.017387 GCGATTGGAGTTGGCCTAAG 58.983 55.000 3.32 0.00 0.00 2.18
2246 2371 0.326595 TGCGATTGGAGTTGGCCTAA 59.673 50.000 3.32 0.00 0.00 2.69
2247 2372 0.392461 GTGCGATTGGAGTTGGCCTA 60.392 55.000 3.32 0.00 0.00 3.93
2248 2373 1.675641 GTGCGATTGGAGTTGGCCT 60.676 57.895 3.32 0.00 0.00 5.19
2249 2374 2.877691 GTGCGATTGGAGTTGGCC 59.122 61.111 0.00 0.00 0.00 5.36
2250 2375 2.032634 TCGTGCGATTGGAGTTGGC 61.033 57.895 0.00 0.00 0.00 4.52
2251 2376 1.635663 GGTCGTGCGATTGGAGTTGG 61.636 60.000 0.00 0.00 0.00 3.77
2252 2377 1.635663 GGGTCGTGCGATTGGAGTTG 61.636 60.000 0.00 0.00 0.00 3.16
2253 2378 1.375523 GGGTCGTGCGATTGGAGTT 60.376 57.895 0.00 0.00 0.00 3.01
2254 2379 0.968901 TAGGGTCGTGCGATTGGAGT 60.969 55.000 0.00 0.00 0.00 3.85
2255 2380 0.174845 TTAGGGTCGTGCGATTGGAG 59.825 55.000 0.00 0.00 0.00 3.86
2256 2381 0.609151 TTTAGGGTCGTGCGATTGGA 59.391 50.000 0.00 0.00 0.00 3.53
2257 2382 0.725117 GTTTAGGGTCGTGCGATTGG 59.275 55.000 0.00 0.00 0.00 3.16
2258 2383 0.725117 GGTTTAGGGTCGTGCGATTG 59.275 55.000 0.00 0.00 0.00 2.67
2259 2384 0.322322 TGGTTTAGGGTCGTGCGATT 59.678 50.000 0.00 0.00 0.00 3.34
2260 2385 0.390735 GTGGTTTAGGGTCGTGCGAT 60.391 55.000 0.00 0.00 0.00 4.58
2261 2386 1.005867 GTGGTTTAGGGTCGTGCGA 60.006 57.895 0.00 0.00 0.00 5.10
2262 2387 2.377310 CGTGGTTTAGGGTCGTGCG 61.377 63.158 0.00 0.00 0.00 5.34
2263 2388 2.030958 CCGTGGTTTAGGGTCGTGC 61.031 63.158 0.00 0.00 0.00 5.34
2264 2389 0.668401 GTCCGTGGTTTAGGGTCGTG 60.668 60.000 0.00 0.00 35.77 4.35
2265 2390 1.667722 GTCCGTGGTTTAGGGTCGT 59.332 57.895 0.00 0.00 35.77 4.34
2266 2391 1.444895 CGTCCGTGGTTTAGGGTCG 60.445 63.158 0.00 0.00 38.91 4.79
2267 2392 0.389037 GACGTCCGTGGTTTAGGGTC 60.389 60.000 3.51 0.00 35.77 4.46
2268 2393 1.667722 GACGTCCGTGGTTTAGGGT 59.332 57.895 3.51 0.00 35.77 4.34
2269 2394 1.079612 GGACGTCCGTGGTTTAGGG 60.080 63.158 20.85 0.00 35.61 3.53
2270 2395 0.248289 ATGGACGTCCGTGGTTTAGG 59.752 55.000 28.38 0.00 39.43 2.69
2271 2396 2.088950 AATGGACGTCCGTGGTTTAG 57.911 50.000 29.51 0.00 39.43 1.85
2272 2397 2.547299 AAATGGACGTCCGTGGTTTA 57.453 45.000 29.51 10.66 39.43 2.01
2273 2398 1.682740 AAAATGGACGTCCGTGGTTT 58.317 45.000 29.51 22.53 39.43 3.27
2274 2399 2.547299 TAAAATGGACGTCCGTGGTT 57.453 45.000 29.51 25.46 39.43 3.67
2275 2400 2.773993 ATAAAATGGACGTCCGTGGT 57.226 45.000 29.51 21.26 39.43 4.16
2276 2401 2.029970 CGAATAAAATGGACGTCCGTGG 59.970 50.000 29.51 9.51 39.43 4.94
2277 2402 2.029970 CCGAATAAAATGGACGTCCGTG 59.970 50.000 29.51 14.71 39.43 4.94
2278 2403 2.094078 TCCGAATAAAATGGACGTCCGT 60.094 45.455 28.70 26.41 39.43 4.69
2279 2404 2.542597 TCCGAATAAAATGGACGTCCG 58.457 47.619 28.70 13.39 39.43 4.79
2280 2405 5.494632 AAATCCGAATAAAATGGACGTCC 57.505 39.130 28.17 28.17 33.91 4.79
2281 2406 6.319399 ACAAAATCCGAATAAAATGGACGTC 58.681 36.000 7.13 7.13 33.91 4.34
2282 2407 6.262193 ACAAAATCCGAATAAAATGGACGT 57.738 33.333 0.00 0.00 33.91 4.34
2283 2408 7.115663 ACAAACAAAATCCGAATAAAATGGACG 59.884 33.333 0.00 0.00 33.91 4.79
2284 2409 8.305441 ACAAACAAAATCCGAATAAAATGGAC 57.695 30.769 0.00 0.00 33.91 4.02
2285 2410 8.894768 AACAAACAAAATCCGAATAAAATGGA 57.105 26.923 0.00 0.00 35.96 3.41
2286 2411 9.592720 GAAACAAACAAAATCCGAATAAAATGG 57.407 29.630 0.00 0.00 0.00 3.16
2287 2412 9.300441 CGAAACAAACAAAATCCGAATAAAATG 57.700 29.630 0.00 0.00 0.00 2.32
2288 2413 8.491950 CCGAAACAAACAAAATCCGAATAAAAT 58.508 29.630 0.00 0.00 0.00 1.82
2289 2414 7.042658 CCCGAAACAAACAAAATCCGAATAAAA 60.043 33.333 0.00 0.00 0.00 1.52
2290 2415 6.421202 CCCGAAACAAACAAAATCCGAATAAA 59.579 34.615 0.00 0.00 0.00 1.40
2291 2416 5.921408 CCCGAAACAAACAAAATCCGAATAA 59.079 36.000 0.00 0.00 0.00 1.40
2292 2417 5.241064 TCCCGAAACAAACAAAATCCGAATA 59.759 36.000 0.00 0.00 0.00 1.75
2293 2418 4.038162 TCCCGAAACAAACAAAATCCGAAT 59.962 37.500 0.00 0.00 0.00 3.34
2294 2419 3.380637 TCCCGAAACAAACAAAATCCGAA 59.619 39.130 0.00 0.00 0.00 4.30
2295 2420 2.950309 TCCCGAAACAAACAAAATCCGA 59.050 40.909 0.00 0.00 0.00 4.55
2296 2421 3.357166 TCCCGAAACAAACAAAATCCG 57.643 42.857 0.00 0.00 0.00 4.18
2297 2422 3.993736 CCATCCCGAAACAAACAAAATCC 59.006 43.478 0.00 0.00 0.00 3.01
2298 2423 3.431912 GCCATCCCGAAACAAACAAAATC 59.568 43.478 0.00 0.00 0.00 2.17
2299 2424 3.181461 TGCCATCCCGAAACAAACAAAAT 60.181 39.130 0.00 0.00 0.00 1.82
2300 2425 2.168521 TGCCATCCCGAAACAAACAAAA 59.831 40.909 0.00 0.00 0.00 2.44
2301 2426 1.757118 TGCCATCCCGAAACAAACAAA 59.243 42.857 0.00 0.00 0.00 2.83
2302 2427 1.403814 TGCCATCCCGAAACAAACAA 58.596 45.000 0.00 0.00 0.00 2.83
2303 2428 1.403814 TTGCCATCCCGAAACAAACA 58.596 45.000 0.00 0.00 0.00 2.83
2304 2429 2.029470 TCATTGCCATCCCGAAACAAAC 60.029 45.455 0.00 0.00 0.00 2.93
2305 2430 2.230992 CTCATTGCCATCCCGAAACAAA 59.769 45.455 0.00 0.00 0.00 2.83
2306 2431 1.818060 CTCATTGCCATCCCGAAACAA 59.182 47.619 0.00 0.00 0.00 2.83
2307 2432 1.462616 CTCATTGCCATCCCGAAACA 58.537 50.000 0.00 0.00 0.00 2.83
2308 2433 0.740737 CCTCATTGCCATCCCGAAAC 59.259 55.000 0.00 0.00 0.00 2.78
2309 2434 1.037030 GCCTCATTGCCATCCCGAAA 61.037 55.000 0.00 0.00 0.00 3.46
2310 2435 1.453745 GCCTCATTGCCATCCCGAA 60.454 57.895 0.00 0.00 0.00 4.30
2311 2436 2.192979 GCCTCATTGCCATCCCGA 59.807 61.111 0.00 0.00 0.00 5.14
2327 2452 4.392940 ACACAAATCTAGGCAGATATGGC 58.607 43.478 5.63 5.63 40.81 4.40
2328 2453 6.732154 CAAACACAAATCTAGGCAGATATGG 58.268 40.000 0.00 0.00 40.81 2.74
2329 2454 6.204359 GCAAACACAAATCTAGGCAGATATG 58.796 40.000 0.00 0.00 40.81 1.78
2330 2455 5.008019 CGCAAACACAAATCTAGGCAGATAT 59.992 40.000 0.00 0.00 40.81 1.63
2331 2456 4.332543 CGCAAACACAAATCTAGGCAGATA 59.667 41.667 0.00 0.00 40.81 1.98
2332 2457 3.127548 CGCAAACACAAATCTAGGCAGAT 59.872 43.478 0.00 0.00 43.67 2.90
2333 2458 2.483877 CGCAAACACAAATCTAGGCAGA 59.516 45.455 0.00 0.00 34.56 4.26
2334 2459 2.855180 CGCAAACACAAATCTAGGCAG 58.145 47.619 0.00 0.00 0.00 4.85
2335 2460 1.068610 GCGCAAACACAAATCTAGGCA 60.069 47.619 0.30 0.00 0.00 4.75
2336 2461 1.617740 GCGCAAACACAAATCTAGGC 58.382 50.000 0.30 0.00 0.00 3.93
2337 2462 1.465689 CGGCGCAAACACAAATCTAGG 60.466 52.381 10.83 0.00 0.00 3.02
2338 2463 1.465689 CCGGCGCAAACACAAATCTAG 60.466 52.381 10.83 0.00 0.00 2.43
2339 2464 0.519519 CCGGCGCAAACACAAATCTA 59.480 50.000 10.83 0.00 0.00 1.98
2340 2465 1.285641 CCGGCGCAAACACAAATCT 59.714 52.632 10.83 0.00 0.00 2.40
2341 2466 2.371923 GCCGGCGCAAACACAAATC 61.372 57.895 12.58 0.00 34.03 2.17
2342 2467 2.355718 GCCGGCGCAAACACAAAT 60.356 55.556 12.58 0.00 34.03 2.32
2343 2468 4.577246 GGCCGGCGCAAACACAAA 62.577 61.111 22.54 0.00 36.38 2.83
2368 2493 4.601794 TGCTGGGGCCACCTGTTG 62.602 66.667 0.20 0.00 40.14 3.33
2369 2494 3.831637 TTGCTGGGGCCACCTGTT 61.832 61.111 0.20 0.00 40.14 3.16
2370 2495 4.603535 GTTGCTGGGGCCACCTGT 62.604 66.667 0.20 0.00 40.14 4.00
2377 2502 3.230522 CTTTGCTGGTTGCTGGGGC 62.231 63.158 0.00 0.00 43.37 5.80
2378 2503 1.114722 TTCTTTGCTGGTTGCTGGGG 61.115 55.000 0.00 0.00 43.37 4.96
2379 2504 0.971386 ATTCTTTGCTGGTTGCTGGG 59.029 50.000 0.00 0.00 43.37 4.45
2380 2505 4.641989 ACTATATTCTTTGCTGGTTGCTGG 59.358 41.667 0.00 0.00 43.37 4.85
2381 2506 5.355071 TGACTATATTCTTTGCTGGTTGCTG 59.645 40.000 0.00 0.00 43.37 4.41
2382 2507 5.355350 GTGACTATATTCTTTGCTGGTTGCT 59.645 40.000 0.00 0.00 43.37 3.91
2426 2551 2.094130 GCTCGGAGGTGCTACTTAAACT 60.094 50.000 7.20 0.00 0.00 2.66
2480 2605 2.022240 GCGAGCCCCTCCACTTCTAG 62.022 65.000 0.00 0.00 0.00 2.43
2590 2722 2.158475 TGCAGGTTCTGTGGAGGAAAAT 60.158 45.455 0.00 0.00 33.43 1.82
2664 2796 4.908601 ACATTCTGTTGTCCTATGGTCA 57.091 40.909 0.00 0.00 0.00 4.02
2843 2975 5.617528 TGTTACCAGTCTTTTCTGTGGTA 57.382 39.130 0.00 0.00 41.65 3.25
2858 2990 2.766263 CAGCAGGTAGAGGATGTTACCA 59.234 50.000 3.77 0.00 41.45 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.