Multiple sequence alignment - TraesCS2A01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G219900 chr2A 100.000 2588 0 0 1 2588 207579606 207582193 0.000000e+00 4780
1 TraesCS2A01G219900 chr2B 91.411 1432 76 26 460 1863 249463405 249464817 0.000000e+00 1919
2 TraesCS2A01G219900 chr2B 95.601 341 12 1 2056 2396 249464983 249465320 6.300000e-151 544
3 TraesCS2A01G219900 chr2B 95.575 113 5 0 2476 2588 249465330 249465442 5.690000e-42 182
4 TraesCS2A01G219900 chr2D 91.896 1382 72 16 518 1863 193342350 193343727 0.000000e+00 1895
5 TraesCS2A01G219900 chr2D 95.872 533 22 0 2056 2588 193343862 193344394 0.000000e+00 863
6 TraesCS2A01G219900 chr6A 93.689 412 23 3 1 410 503384239 503384649 4.730000e-172 614
7 TraesCS2A01G219900 chr6A 91.505 412 31 4 1 410 47887532 47887123 4.830000e-157 564
8 TraesCS2A01G219900 chr7B 91.748 412 32 2 1 411 720818264 720817854 2.890000e-159 571
9 TraesCS2A01G219900 chr1B 91.262 412 35 1 1 411 375862553 375862142 6.250000e-156 560
10 TraesCS2A01G219900 chr1B 89.781 411 40 2 1 410 198592611 198593020 2.280000e-145 525
11 TraesCS2A01G219900 chr5A 90.338 414 33 6 1 411 635379558 635379149 1.050000e-148 536
12 TraesCS2A01G219900 chr7A 90.291 412 35 5 1 408 172415004 172414594 3.790000e-148 534
13 TraesCS2A01G219900 chr7A 90.024 411 38 3 1 410 546682242 546682650 1.760000e-146 529
14 TraesCS2A01G219900 chr7D 89.855 414 38 3 1 410 435434796 435435209 1.760000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G219900 chr2A 207579606 207582193 2587 False 4780.000000 4780 100.000000 1 2588 1 chr2A.!!$F1 2587
1 TraesCS2A01G219900 chr2B 249463405 249465442 2037 False 881.666667 1919 94.195667 460 2588 3 chr2B.!!$F1 2128
2 TraesCS2A01G219900 chr2D 193342350 193344394 2044 False 1379.000000 1895 93.884000 518 2588 2 chr2D.!!$F1 2070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 625 0.035458 AGGGTTGCTCTCTTGGTTCG 59.965 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2144 0.036388 GTGCTGGCCTGTTAGTGCTA 60.036 55.0 11.69 0.0 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.968045 TATCCGGTGCACCAACATT 57.032 47.368 34.16 16.34 35.14 2.71
19 20 2.208132 TATCCGGTGCACCAACATTT 57.792 45.000 34.16 14.98 35.14 2.32
20 21 0.602562 ATCCGGTGCACCAACATTTG 59.397 50.000 34.16 16.43 35.14 2.32
21 22 0.753479 TCCGGTGCACCAACATTTGT 60.753 50.000 34.16 0.00 35.14 2.83
22 23 0.597118 CCGGTGCACCAACATTTGTG 60.597 55.000 34.16 14.97 35.14 3.33
23 24 0.597118 CGGTGCACCAACATTTGTGG 60.597 55.000 34.16 11.04 35.14 4.17
24 25 0.463620 GGTGCACCAACATTTGTGGT 59.536 50.000 31.23 0.00 36.17 4.16
29 30 3.011949 CACCAACATTTGTGGTGCTAC 57.988 47.619 10.43 0.00 45.18 3.58
30 31 1.960689 ACCAACATTTGTGGTGCTACC 59.039 47.619 0.00 0.00 39.22 3.18
31 32 1.068610 CCAACATTTGTGGTGCTACCG 60.069 52.381 0.00 0.00 42.58 4.02
32 33 1.068610 CAACATTTGTGGTGCTACCGG 60.069 52.381 0.00 0.00 42.58 5.28
33 34 0.109723 ACATTTGTGGTGCTACCGGT 59.890 50.000 13.98 13.98 42.58 5.28
34 35 0.521291 CATTTGTGGTGCTACCGGTG 59.479 55.000 19.93 8.61 42.58 4.94
35 36 1.241315 ATTTGTGGTGCTACCGGTGC 61.241 55.000 19.93 19.04 42.58 5.01
36 37 2.610532 TTTGTGGTGCTACCGGTGCA 62.611 55.000 19.93 21.51 42.58 4.57
52 53 2.478746 CACCGCATGCCGTACAAC 59.521 61.111 13.15 0.00 34.38 3.32
53 54 2.031314 ACCGCATGCCGTACAACA 59.969 55.556 13.15 0.00 34.38 3.33
54 55 1.376683 ACCGCATGCCGTACAACAT 60.377 52.632 13.15 0.00 34.38 2.71
55 56 0.958382 ACCGCATGCCGTACAACATT 60.958 50.000 13.15 0.00 34.38 2.71
56 57 0.170116 CCGCATGCCGTACAACATTT 59.830 50.000 13.15 0.00 34.38 2.32
57 58 1.402194 CCGCATGCCGTACAACATTTT 60.402 47.619 13.15 0.00 34.38 1.82
58 59 2.323959 CGCATGCCGTACAACATTTTT 58.676 42.857 13.15 0.00 0.00 1.94
59 60 3.493272 CGCATGCCGTACAACATTTTTA 58.507 40.909 13.15 0.00 0.00 1.52
60 61 3.914966 CGCATGCCGTACAACATTTTTAA 59.085 39.130 13.15 0.00 0.00 1.52
61 62 4.383052 CGCATGCCGTACAACATTTTTAAA 59.617 37.500 13.15 0.00 0.00 1.52
62 63 5.107837 CGCATGCCGTACAACATTTTTAAAA 60.108 36.000 13.15 0.00 0.00 1.52
63 64 6.562270 CGCATGCCGTACAACATTTTTAAAAA 60.562 34.615 15.38 15.38 0.00 1.94
64 65 7.294473 GCATGCCGTACAACATTTTTAAAAAT 58.706 30.769 18.40 18.40 39.07 1.82
65 66 7.477112 GCATGCCGTACAACATTTTTAAAAATC 59.523 33.333 20.71 9.63 36.52 2.17
66 67 8.707839 CATGCCGTACAACATTTTTAAAAATCT 58.292 29.630 20.71 9.10 36.52 2.40
67 68 8.066668 TGCCGTACAACATTTTTAAAAATCTG 57.933 30.769 20.71 20.70 36.52 2.90
68 69 7.921214 TGCCGTACAACATTTTTAAAAATCTGA 59.079 29.630 25.32 14.02 36.52 3.27
69 70 8.756864 GCCGTACAACATTTTTAAAAATCTGAA 58.243 29.630 25.32 11.16 36.52 3.02
93 94 7.566858 AAAAATTCGAGCACATTGACATAAC 57.433 32.000 0.00 0.00 0.00 1.89
94 95 5.878332 AATTCGAGCACATTGACATAACA 57.122 34.783 0.00 0.00 0.00 2.41
95 96 6.441093 AATTCGAGCACATTGACATAACAT 57.559 33.333 0.00 0.00 0.00 2.71
96 97 5.469373 TTCGAGCACATTGACATAACATC 57.531 39.130 0.00 0.00 0.00 3.06
97 98 4.502962 TCGAGCACATTGACATAACATCA 58.497 39.130 0.00 0.00 0.00 3.07
98 99 4.934602 TCGAGCACATTGACATAACATCAA 59.065 37.500 0.00 0.00 40.25 2.57
99 100 5.023920 CGAGCACATTGACATAACATCAAC 58.976 41.667 0.00 0.00 38.84 3.18
100 101 4.973396 AGCACATTGACATAACATCAACG 58.027 39.130 0.00 0.00 38.84 4.10
101 102 4.455533 AGCACATTGACATAACATCAACGT 59.544 37.500 0.00 0.00 38.84 3.99
102 103 5.641636 AGCACATTGACATAACATCAACGTA 59.358 36.000 0.00 0.00 38.84 3.57
103 104 6.316140 AGCACATTGACATAACATCAACGTAT 59.684 34.615 0.00 0.00 38.84 3.06
104 105 6.411782 GCACATTGACATAACATCAACGTATG 59.588 38.462 0.00 0.00 38.84 2.39
105 106 7.463544 CACATTGACATAACATCAACGTATGT 58.536 34.615 0.00 0.00 41.87 2.29
123 124 9.522804 AACGTATGTTGTCATAAAATTTTGTGT 57.477 25.926 22.25 8.81 38.13 3.72
124 125 9.176181 ACGTATGTTGTCATAAAATTTTGTGTC 57.824 29.630 22.25 18.39 38.13 3.67
125 126 9.175060 CGTATGTTGTCATAAAATTTTGTGTCA 57.825 29.630 22.25 20.30 38.13 3.58
175 176 9.938670 ACAAAAATGACAAAATTGACATCAATG 57.061 25.926 7.86 11.26 45.06 2.82
176 177 9.938670 CAAAAATGACAAAATTGACATCAATGT 57.061 25.926 7.86 3.73 45.06 2.71
177 178 9.938670 AAAAATGACAAAATTGACATCAATGTG 57.061 25.926 7.86 11.14 45.06 3.21
178 179 8.890124 AAATGACAAAATTGACATCAATGTGA 57.110 26.923 18.53 6.89 45.06 3.58
179 180 9.496873 AAATGACAAAATTGACATCAATGTGAT 57.503 25.926 18.53 8.46 45.06 3.06
184 185 9.373603 ACAAAATTGACATCAATGTGATAATGG 57.626 29.630 18.53 3.55 45.06 3.16
185 186 8.822855 CAAAATTGACATCAATGTGATAATGGG 58.177 33.333 7.86 0.00 45.06 4.00
186 187 5.518848 TTGACATCAATGTGATAATGGGC 57.481 39.130 0.00 0.00 41.95 5.36
187 188 3.890756 TGACATCAATGTGATAATGGGCC 59.109 43.478 0.00 0.00 41.95 5.80
188 189 3.890756 GACATCAATGTGATAATGGGCCA 59.109 43.478 9.61 9.61 41.95 5.36
189 190 4.288398 ACATCAATGTGATAATGGGCCAA 58.712 39.130 11.89 0.00 40.03 4.52
190 191 4.715792 ACATCAATGTGATAATGGGCCAAA 59.284 37.500 11.89 1.34 40.03 3.28
191 192 5.367352 ACATCAATGTGATAATGGGCCAAAT 59.633 36.000 11.89 7.49 40.03 2.32
192 193 5.534207 TCAATGTGATAATGGGCCAAATC 57.466 39.130 11.89 17.28 0.00 2.17
193 194 5.210430 TCAATGTGATAATGGGCCAAATCT 58.790 37.500 24.45 9.19 0.00 2.40
194 195 6.372104 TCAATGTGATAATGGGCCAAATCTA 58.628 36.000 24.45 17.05 0.00 1.98
195 196 6.838090 TCAATGTGATAATGGGCCAAATCTAA 59.162 34.615 24.45 16.42 0.00 2.10
196 197 7.344093 TCAATGTGATAATGGGCCAAATCTAAA 59.656 33.333 24.45 14.65 0.00 1.85
197 198 6.713762 TGTGATAATGGGCCAAATCTAAAG 57.286 37.500 24.45 0.00 0.00 1.85
198 199 5.068987 TGTGATAATGGGCCAAATCTAAAGC 59.931 40.000 24.45 14.04 0.00 3.51
199 200 4.588528 TGATAATGGGCCAAATCTAAAGCC 59.411 41.667 24.45 0.00 44.99 4.35
203 204 2.672961 GGCCAAATCTAAAGCCCAAC 57.327 50.000 0.00 0.00 39.60 3.77
204 205 2.179427 GGCCAAATCTAAAGCCCAACT 58.821 47.619 0.00 0.00 39.60 3.16
205 206 2.567169 GGCCAAATCTAAAGCCCAACTT 59.433 45.455 0.00 0.00 41.70 2.66
206 207 3.767131 GGCCAAATCTAAAGCCCAACTTA 59.233 43.478 0.00 0.00 37.75 2.24
207 208 4.405680 GGCCAAATCTAAAGCCCAACTTAT 59.594 41.667 0.00 0.00 37.75 1.73
208 209 5.351458 GCCAAATCTAAAGCCCAACTTATG 58.649 41.667 0.00 0.00 37.75 1.90
209 210 5.105351 GCCAAATCTAAAGCCCAACTTATGT 60.105 40.000 0.00 0.00 37.75 2.29
210 211 6.564328 CCAAATCTAAAGCCCAACTTATGTC 58.436 40.000 0.00 0.00 37.75 3.06
211 212 6.152661 CCAAATCTAAAGCCCAACTTATGTCA 59.847 38.462 0.00 0.00 37.75 3.58
212 213 7.147846 CCAAATCTAAAGCCCAACTTATGTCAT 60.148 37.037 0.00 0.00 37.75 3.06
213 214 6.949352 ATCTAAAGCCCAACTTATGTCATG 57.051 37.500 0.00 0.00 37.75 3.07
214 215 5.815581 TCTAAAGCCCAACTTATGTCATGT 58.184 37.500 0.00 0.00 37.75 3.21
215 216 6.953101 TCTAAAGCCCAACTTATGTCATGTA 58.047 36.000 0.00 0.00 37.75 2.29
216 217 5.897377 AAAGCCCAACTTATGTCATGTAC 57.103 39.130 0.00 0.00 37.75 2.90
217 218 4.844349 AGCCCAACTTATGTCATGTACT 57.156 40.909 0.00 0.00 0.00 2.73
218 219 5.950544 AGCCCAACTTATGTCATGTACTA 57.049 39.130 0.00 0.00 0.00 1.82
219 220 6.500589 AGCCCAACTTATGTCATGTACTAT 57.499 37.500 0.00 0.00 0.00 2.12
220 221 6.900194 AGCCCAACTTATGTCATGTACTATT 58.100 36.000 0.00 0.00 0.00 1.73
221 222 6.992715 AGCCCAACTTATGTCATGTACTATTC 59.007 38.462 0.00 0.00 0.00 1.75
222 223 6.765989 GCCCAACTTATGTCATGTACTATTCA 59.234 38.462 0.00 0.00 0.00 2.57
223 224 7.041780 GCCCAACTTATGTCATGTACTATTCAG 60.042 40.741 0.00 0.00 0.00 3.02
224 225 7.987458 CCCAACTTATGTCATGTACTATTCAGT 59.013 37.037 0.00 0.00 38.91 3.41
225 226 8.820933 CCAACTTATGTCATGTACTATTCAGTG 58.179 37.037 0.00 0.00 36.14 3.66
226 227 9.371136 CAACTTATGTCATGTACTATTCAGTGT 57.629 33.333 0.00 0.00 36.14 3.55
227 228 9.944376 AACTTATGTCATGTACTATTCAGTGTT 57.056 29.630 0.00 0.00 36.14 3.32
228 229 9.371136 ACTTATGTCATGTACTATTCAGTGTTG 57.629 33.333 0.00 0.00 36.14 3.33
229 230 9.586435 CTTATGTCATGTACTATTCAGTGTTGA 57.414 33.333 0.00 0.00 36.14 3.18
230 231 9.936759 TTATGTCATGTACTATTCAGTGTTGAA 57.063 29.630 0.00 0.00 46.67 2.69
256 257 9.830975 ATTTGTTATTTTTGTTTTAGGAGCTGT 57.169 25.926 0.00 0.00 0.00 4.40
257 258 8.641499 TTGTTATTTTTGTTTTAGGAGCTGTG 57.359 30.769 0.00 0.00 0.00 3.66
258 259 7.777095 TGTTATTTTTGTTTTAGGAGCTGTGT 58.223 30.769 0.00 0.00 0.00 3.72
259 260 8.254508 TGTTATTTTTGTTTTAGGAGCTGTGTT 58.745 29.630 0.00 0.00 0.00 3.32
260 261 9.093970 GTTATTTTTGTTTTAGGAGCTGTGTTT 57.906 29.630 0.00 0.00 0.00 2.83
261 262 7.770801 ATTTTTGTTTTAGGAGCTGTGTTTC 57.229 32.000 0.00 0.00 0.00 2.78
262 263 4.545823 TTGTTTTAGGAGCTGTGTTTCG 57.454 40.909 0.00 0.00 0.00 3.46
263 264 3.799366 TGTTTTAGGAGCTGTGTTTCGA 58.201 40.909 0.00 0.00 0.00 3.71
264 265 4.193090 TGTTTTAGGAGCTGTGTTTCGAA 58.807 39.130 0.00 0.00 0.00 3.71
265 266 4.819630 TGTTTTAGGAGCTGTGTTTCGAAT 59.180 37.500 0.00 0.00 0.00 3.34
266 267 5.298276 TGTTTTAGGAGCTGTGTTTCGAATT 59.702 36.000 0.00 0.00 0.00 2.17
267 268 6.183360 TGTTTTAGGAGCTGTGTTTCGAATTT 60.183 34.615 0.00 0.00 0.00 1.82
268 269 6.385649 TTTAGGAGCTGTGTTTCGAATTTT 57.614 33.333 0.00 0.00 0.00 1.82
269 270 4.228912 AGGAGCTGTGTTTCGAATTTTG 57.771 40.909 0.00 0.00 0.00 2.44
270 271 3.882888 AGGAGCTGTGTTTCGAATTTTGA 59.117 39.130 0.00 0.00 0.00 2.69
271 272 3.975035 GGAGCTGTGTTTCGAATTTTGAC 59.025 43.478 0.00 0.00 0.00 3.18
272 273 4.261197 GGAGCTGTGTTTCGAATTTTGACT 60.261 41.667 0.00 0.00 0.00 3.41
273 274 5.248870 AGCTGTGTTTCGAATTTTGACTT 57.751 34.783 0.00 0.00 0.00 3.01
274 275 5.036737 AGCTGTGTTTCGAATTTTGACTTG 58.963 37.500 0.00 0.00 0.00 3.16
275 276 5.034152 GCTGTGTTTCGAATTTTGACTTGA 58.966 37.500 0.00 0.00 0.00 3.02
276 277 5.514914 GCTGTGTTTCGAATTTTGACTTGAA 59.485 36.000 0.00 0.00 0.00 2.69
277 278 6.034470 GCTGTGTTTCGAATTTTGACTTGAAA 59.966 34.615 0.00 0.00 0.00 2.69
278 279 7.254084 GCTGTGTTTCGAATTTTGACTTGAAAT 60.254 33.333 0.00 0.00 0.00 2.17
279 280 8.472683 TGTGTTTCGAATTTTGACTTGAAATT 57.527 26.923 0.00 0.00 38.89 1.82
280 281 8.930760 TGTGTTTCGAATTTTGACTTGAAATTT 58.069 25.926 0.00 0.00 36.96 1.82
281 282 9.753669 GTGTTTCGAATTTTGACTTGAAATTTT 57.246 25.926 0.00 0.00 36.96 1.82
282 283 9.752274 TGTTTCGAATTTTGACTTGAAATTTTG 57.248 25.926 0.00 0.00 36.96 2.44
283 284 9.753669 GTTTCGAATTTTGACTTGAAATTTTGT 57.246 25.926 0.00 0.00 36.96 2.83
284 285 9.752274 TTTCGAATTTTGACTTGAAATTTTGTG 57.248 25.926 0.00 0.00 36.96 3.33
285 286 8.694975 TCGAATTTTGACTTGAAATTTTGTGA 57.305 26.923 0.00 0.00 36.96 3.58
286 287 9.144747 TCGAATTTTGACTTGAAATTTTGTGAA 57.855 25.926 0.00 0.00 36.96 3.18
287 288 9.752274 CGAATTTTGACTTGAAATTTTGTGAAA 57.248 25.926 0.00 0.00 36.96 2.69
294 295 9.698309 TGACTTGAAATTTTGTGAAAAACTACA 57.302 25.926 0.00 0.00 33.47 2.74
305 306 9.862371 TTTGTGAAAAACTACATTATGTTGTGT 57.138 25.926 12.58 5.08 36.52 3.72
306 307 9.509855 TTGTGAAAAACTACATTATGTTGTGTC 57.490 29.630 12.58 10.84 36.52 3.67
307 308 7.853437 TGTGAAAAACTACATTATGTTGTGTCG 59.147 33.333 12.58 0.00 36.52 4.35
308 309 8.065407 GTGAAAAACTACATTATGTTGTGTCGA 58.935 33.333 12.58 0.00 36.52 4.20
309 310 8.779303 TGAAAAACTACATTATGTTGTGTCGAT 58.221 29.630 12.58 0.00 36.52 3.59
310 311 8.948853 AAAAACTACATTATGTTGTGTCGATG 57.051 30.769 12.58 0.00 36.52 3.84
311 312 7.667043 AAACTACATTATGTTGTGTCGATGT 57.333 32.000 12.58 0.00 36.52 3.06
312 313 6.647212 ACTACATTATGTTGTGTCGATGTG 57.353 37.500 11.24 0.00 35.18 3.21
313 314 4.340894 ACATTATGTTGTGTCGATGTGC 57.659 40.909 0.00 0.00 0.00 4.57
314 315 3.126858 ACATTATGTTGTGTCGATGTGCC 59.873 43.478 0.00 0.00 0.00 5.01
315 316 2.464157 TATGTTGTGTCGATGTGCCA 57.536 45.000 0.00 0.00 0.00 4.92
316 317 0.874390 ATGTTGTGTCGATGTGCCAC 59.126 50.000 0.00 0.00 0.00 5.01
317 318 0.462759 TGTTGTGTCGATGTGCCACA 60.463 50.000 0.00 0.00 37.32 4.17
318 319 0.874390 GTTGTGTCGATGTGCCACAT 59.126 50.000 10.74 10.74 42.43 3.21
319 320 1.266718 GTTGTGTCGATGTGCCACATT 59.733 47.619 12.36 0.00 39.27 2.71
320 321 1.603456 TGTGTCGATGTGCCACATTT 58.397 45.000 12.36 0.00 39.27 2.32
321 322 1.952990 TGTGTCGATGTGCCACATTTT 59.047 42.857 12.36 0.00 39.27 1.82
322 323 2.360483 TGTGTCGATGTGCCACATTTTT 59.640 40.909 12.36 0.00 39.27 1.94
359 360 9.684448 TTCAAACATTTAAAATATGCGACTTGA 57.316 25.926 0.00 0.00 0.00 3.02
360 361 9.340695 TCAAACATTTAAAATATGCGACTTGAG 57.659 29.630 0.00 0.00 0.00 3.02
361 362 9.128107 CAAACATTTAAAATATGCGACTTGAGT 57.872 29.630 0.00 0.00 0.00 3.41
362 363 9.691362 AAACATTTAAAATATGCGACTTGAGTT 57.309 25.926 0.00 0.00 0.00 3.01
363 364 9.691362 AACATTTAAAATATGCGACTTGAGTTT 57.309 25.926 0.00 0.00 0.00 2.66
364 365 9.128107 ACATTTAAAATATGCGACTTGAGTTTG 57.872 29.630 0.00 0.00 0.00 2.93
365 366 8.586273 CATTTAAAATATGCGACTTGAGTTTGG 58.414 33.333 0.00 0.00 0.00 3.28
366 367 5.705609 AAAATATGCGACTTGAGTTTGGT 57.294 34.783 0.00 0.00 0.00 3.67
367 368 4.685169 AATATGCGACTTGAGTTTGGTG 57.315 40.909 0.00 0.00 0.00 4.17
368 369 0.593128 ATGCGACTTGAGTTTGGTGC 59.407 50.000 0.00 0.00 0.00 5.01
369 370 0.746204 TGCGACTTGAGTTTGGTGCA 60.746 50.000 0.00 0.00 0.00 4.57
370 371 0.317020 GCGACTTGAGTTTGGTGCAC 60.317 55.000 8.80 8.80 0.00 4.57
371 372 0.307760 CGACTTGAGTTTGGTGCACC 59.692 55.000 29.67 29.67 0.00 5.01
372 373 0.307760 GACTTGAGTTTGGTGCACCG 59.692 55.000 30.07 15.74 39.43 4.94
373 374 1.101049 ACTTGAGTTTGGTGCACCGG 61.101 55.000 30.07 14.08 39.43 5.28
374 375 1.077357 TTGAGTTTGGTGCACCGGT 60.077 52.632 30.07 14.70 39.43 5.28
375 376 0.180642 TTGAGTTTGGTGCACCGGTA 59.819 50.000 30.07 15.68 39.43 4.02
376 377 0.250124 TGAGTTTGGTGCACCGGTAG 60.250 55.000 30.07 2.73 39.43 3.18
377 378 1.574702 GAGTTTGGTGCACCGGTAGC 61.575 60.000 30.07 19.02 39.43 3.58
378 379 1.894756 GTTTGGTGCACCGGTAGCA 60.895 57.895 30.07 22.47 40.19 3.49
383 384 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
384 385 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
385 386 2.325082 GCACCGGTAGCACCACAAG 61.325 63.158 19.85 0.99 38.47 3.16
386 387 2.032071 ACCGGTAGCACCACAAGC 59.968 61.111 4.49 0.00 38.47 4.01
387 388 2.031919 CCGGTAGCACCACAAGCA 59.968 61.111 0.00 0.00 38.47 3.91
388 389 2.325082 CCGGTAGCACCACAAGCAC 61.325 63.158 0.00 0.00 38.47 4.40
389 390 2.325082 CGGTAGCACCACAAGCACC 61.325 63.158 6.21 0.00 38.47 5.01
390 391 2.325082 GGTAGCACCACAAGCACCG 61.325 63.158 1.01 0.00 38.42 4.94
391 392 1.301401 GTAGCACCACAAGCACCGA 60.301 57.895 0.00 0.00 0.00 4.69
392 393 0.673644 GTAGCACCACAAGCACCGAT 60.674 55.000 0.00 0.00 0.00 4.18
393 394 0.673333 TAGCACCACAAGCACCGATG 60.673 55.000 0.00 0.00 0.00 3.84
406 407 3.117491 CACCGATGCACCAGATATTCT 57.883 47.619 0.00 0.00 0.00 2.40
407 408 3.062763 CACCGATGCACCAGATATTCTC 58.937 50.000 0.00 0.00 0.00 2.87
408 409 2.037772 ACCGATGCACCAGATATTCTCC 59.962 50.000 0.00 0.00 0.00 3.71
409 410 2.613977 CCGATGCACCAGATATTCTCCC 60.614 54.545 0.00 0.00 0.00 4.30
410 411 2.693069 GATGCACCAGATATTCTCCCG 58.307 52.381 0.00 0.00 0.00 5.14
411 412 0.106708 TGCACCAGATATTCTCCCGC 59.893 55.000 0.00 0.00 0.00 6.13
412 413 0.946221 GCACCAGATATTCTCCCGCG 60.946 60.000 0.00 0.00 0.00 6.46
413 414 0.319900 CACCAGATATTCTCCCGCGG 60.320 60.000 21.04 21.04 0.00 6.46
414 415 1.293498 CCAGATATTCTCCCGCGGG 59.707 63.158 39.13 39.13 0.00 6.13
415 416 1.185618 CCAGATATTCTCCCGCGGGA 61.186 60.000 42.62 42.62 42.90 5.14
428 429 2.904866 CGGGAGGAGAGCCGAGAG 60.905 72.222 0.00 0.00 39.96 3.20
440 441 2.718731 CGAGAGGACAGCGGCTAG 59.281 66.667 0.26 0.00 0.00 3.42
441 442 2.840066 CGAGAGGACAGCGGCTAGG 61.840 68.421 0.26 0.00 0.00 3.02
442 443 2.443016 AGAGGACAGCGGCTAGGG 60.443 66.667 0.26 0.00 0.00 3.53
443 444 2.760385 GAGGACAGCGGCTAGGGT 60.760 66.667 0.26 0.00 0.00 4.34
444 445 2.284699 AGGACAGCGGCTAGGGTT 60.285 61.111 0.26 0.00 0.00 4.11
445 446 2.187163 GGACAGCGGCTAGGGTTC 59.813 66.667 0.26 0.00 0.00 3.62
446 447 2.187163 GACAGCGGCTAGGGTTCC 59.813 66.667 0.26 0.00 0.00 3.62
447 448 3.387225 GACAGCGGCTAGGGTTCCC 62.387 68.421 0.26 0.00 0.00 3.97
448 449 4.176752 CAGCGGCTAGGGTTCCCC 62.177 72.222 0.26 0.00 45.90 4.81
512 513 3.242518 GCTAAACTTGCCGGATTCAAAC 58.757 45.455 5.05 0.00 0.00 2.93
518 519 4.331968 ACTTGCCGGATTCAAACTTATGA 58.668 39.130 5.05 0.00 0.00 2.15
608 609 1.236616 TGATGACAGTTGCGCAAGGG 61.237 55.000 25.78 20.51 38.28 3.95
624 625 0.035458 AGGGTTGCTCTCTTGGTTCG 59.965 55.000 0.00 0.00 0.00 3.95
632 647 3.321111 TGCTCTCTTGGTTCGTAGTTTCT 59.679 43.478 0.00 0.00 0.00 2.52
648 663 6.366061 CGTAGTTTCTCAGAAATCACACATGA 59.634 38.462 2.39 0.00 39.83 3.07
756 778 2.291282 TGCATTTTACCGTTCTCCCCAT 60.291 45.455 0.00 0.00 0.00 4.00
835 857 3.119531 ACAACACGGATAACAATGCATGG 60.120 43.478 0.00 0.00 0.00 3.66
866 888 2.737039 GCCGAACAGCCAGAAACAAAAA 60.737 45.455 0.00 0.00 0.00 1.94
910 932 1.374252 CCGTCCTACATATGGCCGC 60.374 63.158 7.80 0.00 0.00 6.53
921 943 1.102809 TATGGCCGCCTCATTTGCTG 61.103 55.000 11.61 0.00 0.00 4.41
974 997 6.956202 AGATATTCATCAAAGGCTTCAAGG 57.044 37.500 0.00 0.00 33.21 3.61
1017 1040 0.462759 GGATGAAGAGGAAGCCCGTG 60.463 60.000 0.00 0.00 37.58 4.94
1159 1182 2.727798 ACGTTTACTCAATTCGACGTGG 59.272 45.455 0.00 0.00 41.49 4.94
1165 1188 2.125673 AATTCGACGTGGCCTCCG 60.126 61.111 3.32 9.27 0.00 4.63
1166 1189 4.814294 ATTCGACGTGGCCTCCGC 62.814 66.667 14.17 7.32 0.00 5.54
1369 1392 3.113514 TTGCAGGCGGACAAGGTGA 62.114 57.895 0.00 0.00 0.00 4.02
1387 1410 1.173043 GATGTTCACGCCCCAATTCA 58.827 50.000 0.00 0.00 0.00 2.57
1494 1517 1.243342 TGCTGGGGACGCTCAAAATG 61.243 55.000 0.00 0.00 0.00 2.32
1507 1530 0.677731 CAAAATGAGGGCCAGCTCGA 60.678 55.000 6.18 0.00 0.00 4.04
1638 1665 1.920574 CACGGCGTGTCTATCAAGAAG 59.079 52.381 30.56 0.95 32.16 2.85
1653 1680 3.321111 TCAAGAAGTGTGGGAGTGAGTAC 59.679 47.826 0.00 0.00 0.00 2.73
1755 1795 6.036735 ACGTAATTAAGCGCACTCATACAATT 59.963 34.615 11.47 5.60 0.00 2.32
1761 1801 6.771188 AAGCGCACTCATACAATTAGTATC 57.229 37.500 11.47 0.00 41.47 2.24
1764 1804 5.059832 GCGCACTCATACAATTAGTATCTCG 59.940 44.000 0.30 0.00 41.47 4.04
1774 1814 1.091197 TAGTATCTCGCCGCGTGTGA 61.091 55.000 13.39 8.02 0.00 3.58
1826 1870 9.107177 GAGAATGCAGAGAAAAATAAGAGATGA 57.893 33.333 0.00 0.00 0.00 2.92
1827 1871 9.629878 AGAATGCAGAGAAAAATAAGAGATGAT 57.370 29.630 0.00 0.00 0.00 2.45
1828 1872 9.666626 GAATGCAGAGAAAAATAAGAGATGATG 57.333 33.333 0.00 0.00 0.00 3.07
1847 1891 6.653526 TGATGTTCTTGACAAAATCCACAT 57.346 33.333 0.00 0.00 42.62 3.21
1848 1892 7.053316 TGATGTTCTTGACAAAATCCACATT 57.947 32.000 0.00 0.00 42.62 2.71
1852 1896 4.619973 TCTTGACAAAATCCACATTGCAC 58.380 39.130 0.00 0.00 0.00 4.57
1885 1979 4.374112 GCGAATCGTTCTCAAATACTAGCG 60.374 45.833 4.07 0.00 0.00 4.26
1899 1995 2.893637 ACTAGCGCAAATTCGAGACAT 58.106 42.857 11.47 0.00 0.00 3.06
1906 2002 4.650985 CGCAAATTCGAGACATCAAATCA 58.349 39.130 0.00 0.00 0.00 2.57
1910 2006 6.414109 GCAAATTCGAGACATCAAATCATCAG 59.586 38.462 0.00 0.00 0.00 2.90
1911 2007 5.670149 ATTCGAGACATCAAATCATCAGC 57.330 39.130 0.00 0.00 0.00 4.26
1912 2008 3.461061 TCGAGACATCAAATCATCAGCC 58.539 45.455 0.00 0.00 0.00 4.85
1913 2009 3.118665 TCGAGACATCAAATCATCAGCCA 60.119 43.478 0.00 0.00 0.00 4.75
1915 2011 4.319549 CGAGACATCAAATCATCAGCCATG 60.320 45.833 0.00 0.00 0.00 3.66
1916 2012 4.788679 AGACATCAAATCATCAGCCATGA 58.211 39.130 0.00 0.00 46.01 3.07
1930 2026 6.381481 TCAGCCATGATGTTTGATGAATAC 57.619 37.500 0.00 0.00 0.00 1.89
1931 2027 6.124340 TCAGCCATGATGTTTGATGAATACT 58.876 36.000 0.00 0.00 0.00 2.12
1932 2028 6.261603 TCAGCCATGATGTTTGATGAATACTC 59.738 38.462 0.00 0.00 0.00 2.59
1933 2029 5.533903 AGCCATGATGTTTGATGAATACTCC 59.466 40.000 0.00 0.00 0.00 3.85
1934 2030 5.533903 GCCATGATGTTTGATGAATACTCCT 59.466 40.000 0.00 0.00 0.00 3.69
1935 2031 6.712095 GCCATGATGTTTGATGAATACTCCTA 59.288 38.462 0.00 0.00 0.00 2.94
1936 2032 7.094890 GCCATGATGTTTGATGAATACTCCTAG 60.095 40.741 0.00 0.00 0.00 3.02
1937 2033 8.152898 CCATGATGTTTGATGAATACTCCTAGA 58.847 37.037 0.00 0.00 0.00 2.43
1938 2034 9.722184 CATGATGTTTGATGAATACTCCTAGAT 57.278 33.333 0.00 0.00 0.00 1.98
1941 2037 9.868277 GATGTTTGATGAATACTCCTAGATAGG 57.132 37.037 0.00 0.00 45.02 2.57
1985 2081 7.556733 AAAAGAATGCAACAATGTTCATTGT 57.443 28.000 20.87 20.87 45.75 2.71
1999 2095 2.147958 TCATTGTTGTGAACTACGGGC 58.852 47.619 0.00 0.00 0.00 6.13
2000 2096 1.876799 CATTGTTGTGAACTACGGGCA 59.123 47.619 0.00 0.00 0.00 5.36
2001 2097 1.301423 TTGTTGTGAACTACGGGCAC 58.699 50.000 0.00 0.00 0.00 5.01
2002 2098 0.178301 TGTTGTGAACTACGGGCACA 59.822 50.000 0.00 0.00 40.44 4.57
2003 2099 1.202710 TGTTGTGAACTACGGGCACAT 60.203 47.619 0.00 0.00 41.60 3.21
2004 2100 1.196808 GTTGTGAACTACGGGCACATG 59.803 52.381 0.00 0.00 41.60 3.21
2005 2101 0.682292 TGTGAACTACGGGCACATGA 59.318 50.000 0.00 0.00 37.60 3.07
2006 2102 1.337728 TGTGAACTACGGGCACATGAG 60.338 52.381 0.00 0.00 37.60 2.90
2042 2144 2.649816 ACCCCCACTAAGCTTCAATTCT 59.350 45.455 0.00 0.00 0.00 2.40
2050 2152 6.818644 CCACTAAGCTTCAATTCTAGCACTAA 59.181 38.462 0.00 0.00 39.85 2.24
2051 2153 7.201565 CCACTAAGCTTCAATTCTAGCACTAAC 60.202 40.741 0.00 0.00 39.85 2.34
2052 2154 7.331934 CACTAAGCTTCAATTCTAGCACTAACA 59.668 37.037 0.00 0.00 39.85 2.41
2053 2155 6.734104 AAGCTTCAATTCTAGCACTAACAG 57.266 37.500 10.13 0.00 39.85 3.16
2054 2156 5.181748 AGCTTCAATTCTAGCACTAACAGG 58.818 41.667 10.13 0.00 39.85 4.00
2055 2157 4.201861 GCTTCAATTCTAGCACTAACAGGC 60.202 45.833 3.94 0.00 37.35 4.85
2056 2158 3.873910 TCAATTCTAGCACTAACAGGCC 58.126 45.455 0.00 0.00 0.00 5.19
2057 2159 3.263170 TCAATTCTAGCACTAACAGGCCA 59.737 43.478 5.01 0.00 0.00 5.36
2058 2160 3.550437 ATTCTAGCACTAACAGGCCAG 57.450 47.619 5.01 0.00 0.00 4.85
2059 2161 0.537188 TCTAGCACTAACAGGCCAGC 59.463 55.000 5.01 0.00 0.00 4.85
2060 2162 0.250234 CTAGCACTAACAGGCCAGCA 59.750 55.000 5.01 0.00 0.00 4.41
2061 2163 0.036388 TAGCACTAACAGGCCAGCAC 60.036 55.000 5.01 0.00 0.00 4.40
2062 2164 1.302832 GCACTAACAGGCCAGCACT 60.303 57.895 5.01 0.00 0.00 4.40
2063 2165 0.036388 GCACTAACAGGCCAGCACTA 60.036 55.000 5.01 0.00 0.00 2.74
2064 2166 1.610624 GCACTAACAGGCCAGCACTAA 60.611 52.381 5.01 0.00 0.00 2.24
2072 2174 2.095853 CAGGCCAGCACTAATAACAACG 59.904 50.000 5.01 0.00 0.00 4.10
2166 2268 0.469494 TCTTCCAGACAACTGCTGCA 59.531 50.000 0.88 0.88 42.25 4.41
2379 2481 4.821589 CTTCTCCCTGGCCGTCGC 62.822 72.222 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.815613 CAAATGTTGGTGCACCGGATA 59.184 47.619 30.07 19.48 39.43 2.59
3 4 0.597118 CACAAATGTTGGTGCACCGG 60.597 55.000 30.07 15.08 39.43 5.28
4 5 0.597118 CCACAAATGTTGGTGCACCG 60.597 55.000 30.07 16.48 39.43 4.94
5 6 0.463620 ACCACAAATGTTGGTGCACC 59.536 50.000 29.67 29.67 34.19 5.01
6 7 1.569708 CACCACAAATGTTGGTGCAC 58.430 50.000 8.80 8.80 45.18 4.57
10 11 1.960689 GGTAGCACCACAAATGTTGGT 59.039 47.619 1.01 0.00 38.42 3.67
11 12 1.068610 CGGTAGCACCACAAATGTTGG 60.069 52.381 6.21 0.00 38.47 3.77
12 13 1.068610 CCGGTAGCACCACAAATGTTG 60.069 52.381 0.00 0.00 38.47 3.33
13 14 1.243902 CCGGTAGCACCACAAATGTT 58.756 50.000 0.00 0.00 38.47 2.71
14 15 0.109723 ACCGGTAGCACCACAAATGT 59.890 50.000 4.49 0.00 38.47 2.71
15 16 0.521291 CACCGGTAGCACCACAAATG 59.479 55.000 6.87 0.00 38.47 2.32
16 17 1.241315 GCACCGGTAGCACCACAAAT 61.241 55.000 19.85 0.00 38.47 2.32
17 18 1.894756 GCACCGGTAGCACCACAAA 60.895 57.895 19.85 0.00 38.47 2.83
18 19 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
19 20 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
35 36 1.643868 ATGTTGTACGGCATGCGGTG 61.644 55.000 33.62 19.06 0.00 4.94
36 37 0.958382 AATGTTGTACGGCATGCGGT 60.958 50.000 30.26 30.26 0.00 5.68
37 38 0.170116 AAATGTTGTACGGCATGCGG 59.830 50.000 22.34 22.34 0.00 5.69
38 39 1.975837 AAAATGTTGTACGGCATGCG 58.024 45.000 12.44 9.76 0.00 4.73
39 40 5.830900 TTTAAAAATGTTGTACGGCATGC 57.169 34.783 9.90 9.90 0.00 4.06
40 41 8.707839 AGATTTTTAAAAATGTTGTACGGCATG 58.292 29.630 26.69 0.00 38.64 4.06
41 42 8.707839 CAGATTTTTAAAAATGTTGTACGGCAT 58.292 29.630 26.69 2.99 38.64 4.40
42 43 7.921214 TCAGATTTTTAAAAATGTTGTACGGCA 59.079 29.630 26.69 8.44 38.64 5.69
43 44 8.288217 TCAGATTTTTAAAAATGTTGTACGGC 57.712 30.769 26.69 11.57 38.64 5.68
69 70 7.144661 TGTTATGTCAATGTGCTCGAATTTTT 58.855 30.769 0.00 0.00 0.00 1.94
70 71 6.676950 TGTTATGTCAATGTGCTCGAATTTT 58.323 32.000 0.00 0.00 0.00 1.82
71 72 6.252967 TGTTATGTCAATGTGCTCGAATTT 57.747 33.333 0.00 0.00 0.00 1.82
72 73 5.878332 TGTTATGTCAATGTGCTCGAATT 57.122 34.783 0.00 0.00 0.00 2.17
73 74 5.585844 TGATGTTATGTCAATGTGCTCGAAT 59.414 36.000 0.00 0.00 0.00 3.34
74 75 4.934602 TGATGTTATGTCAATGTGCTCGAA 59.065 37.500 0.00 0.00 0.00 3.71
75 76 4.502962 TGATGTTATGTCAATGTGCTCGA 58.497 39.130 0.00 0.00 0.00 4.04
76 77 4.863152 TGATGTTATGTCAATGTGCTCG 57.137 40.909 0.00 0.00 0.00 5.03
77 78 5.023920 CGTTGATGTTATGTCAATGTGCTC 58.976 41.667 0.00 0.00 37.84 4.26
78 79 4.973396 CGTTGATGTTATGTCAATGTGCT 58.027 39.130 0.00 0.00 37.84 4.40
97 98 9.522804 ACACAAAATTTTATGACAACATACGTT 57.477 25.926 15.85 0.00 38.50 3.99
98 99 9.176181 GACACAAAATTTTATGACAACATACGT 57.824 29.630 15.85 0.00 38.50 3.57
99 100 9.175060 TGACACAAAATTTTATGACAACATACG 57.825 29.630 15.85 0.00 38.50 3.06
149 150 9.938670 CATTGATGTCAATTTTGTCATTTTTGT 57.061 25.926 5.53 0.00 43.48 2.83
150 151 9.938670 ACATTGATGTCAATTTTGTCATTTTTG 57.061 25.926 5.53 5.70 43.48 2.44
151 152 9.938670 CACATTGATGTCAATTTTGTCATTTTT 57.061 25.926 5.53 0.00 43.48 1.94
152 153 9.327628 TCACATTGATGTCAATTTTGTCATTTT 57.672 25.926 5.53 0.00 43.48 1.82
153 154 8.890124 TCACATTGATGTCAATTTTGTCATTT 57.110 26.923 5.53 0.00 43.48 2.32
158 159 9.373603 CCATTATCACATTGATGTCAATTTTGT 57.626 29.630 5.53 0.75 43.48 2.83
159 160 8.822855 CCCATTATCACATTGATGTCAATTTTG 58.177 33.333 5.53 6.63 43.48 2.44
160 161 7.496591 GCCCATTATCACATTGATGTCAATTTT 59.503 33.333 5.53 0.00 43.48 1.82
161 162 6.987992 GCCCATTATCACATTGATGTCAATTT 59.012 34.615 5.53 0.00 43.48 1.82
162 163 6.463331 GGCCCATTATCACATTGATGTCAATT 60.463 38.462 5.53 0.00 43.48 2.32
163 164 5.011329 GGCCCATTATCACATTGATGTCAAT 59.989 40.000 2.48 2.48 46.62 2.57
164 165 4.341806 GGCCCATTATCACATTGATGTCAA 59.658 41.667 0.00 0.00 39.39 3.18
165 166 3.890756 GGCCCATTATCACATTGATGTCA 59.109 43.478 0.00 0.00 39.39 3.58
166 167 3.890756 TGGCCCATTATCACATTGATGTC 59.109 43.478 0.00 0.00 39.39 3.06
167 168 3.913509 TGGCCCATTATCACATTGATGT 58.086 40.909 0.00 0.00 42.84 3.06
168 169 4.940905 TTGGCCCATTATCACATTGATG 57.059 40.909 0.00 0.00 37.70 3.07
169 170 5.842328 AGATTTGGCCCATTATCACATTGAT 59.158 36.000 0.00 0.00 40.72 2.57
170 171 5.210430 AGATTTGGCCCATTATCACATTGA 58.790 37.500 0.00 0.00 0.00 2.57
171 172 5.540400 AGATTTGGCCCATTATCACATTG 57.460 39.130 0.00 0.00 0.00 2.82
172 173 7.673641 TTTAGATTTGGCCCATTATCACATT 57.326 32.000 0.00 0.00 0.00 2.71
173 174 6.239402 GCTTTAGATTTGGCCCATTATCACAT 60.239 38.462 0.00 0.00 0.00 3.21
174 175 5.068987 GCTTTAGATTTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
175 176 5.509670 GGCTTTAGATTTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
176 177 4.588528 GGCTTTAGATTTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
177 178 5.139435 GGCTTTAGATTTGGCCCATTATC 57.861 43.478 0.00 0.00 38.77 1.75
184 185 2.179427 AGTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
185 186 3.961480 AAGTTGGGCTTTAGATTTGGC 57.039 42.857 0.00 0.00 32.57 4.52
186 187 6.152661 TGACATAAGTTGGGCTTTAGATTTGG 59.847 38.462 0.00 0.00 38.57 3.28
187 188 7.156876 TGACATAAGTTGGGCTTTAGATTTG 57.843 36.000 0.00 0.00 38.57 2.32
188 189 7.397192 ACATGACATAAGTTGGGCTTTAGATTT 59.603 33.333 0.00 0.00 38.57 2.17
189 190 6.891908 ACATGACATAAGTTGGGCTTTAGATT 59.108 34.615 0.00 0.00 38.57 2.40
190 191 6.426587 ACATGACATAAGTTGGGCTTTAGAT 58.573 36.000 0.00 0.00 38.57 1.98
191 192 5.815581 ACATGACATAAGTTGGGCTTTAGA 58.184 37.500 0.00 0.00 38.57 2.10
192 193 6.823689 AGTACATGACATAAGTTGGGCTTTAG 59.176 38.462 0.00 0.00 38.57 1.85
193 194 6.717289 AGTACATGACATAAGTTGGGCTTTA 58.283 36.000 0.00 0.00 38.57 1.85
194 195 5.570320 AGTACATGACATAAGTTGGGCTTT 58.430 37.500 0.00 0.00 38.57 3.51
195 196 5.179452 AGTACATGACATAAGTTGGGCTT 57.821 39.130 0.00 0.00 41.05 4.35
196 197 4.844349 AGTACATGACATAAGTTGGGCT 57.156 40.909 0.00 0.00 0.00 5.19
197 198 6.765989 TGAATAGTACATGACATAAGTTGGGC 59.234 38.462 0.00 0.00 0.00 5.36
198 199 7.987458 ACTGAATAGTACATGACATAAGTTGGG 59.013 37.037 0.00 0.00 34.74 4.12
199 200 8.820933 CACTGAATAGTACATGACATAAGTTGG 58.179 37.037 0.00 0.00 34.74 3.77
200 201 9.371136 ACACTGAATAGTACATGACATAAGTTG 57.629 33.333 0.00 0.00 34.74 3.16
201 202 9.944376 AACACTGAATAGTACATGACATAAGTT 57.056 29.630 0.00 0.00 34.74 2.66
202 203 9.371136 CAACACTGAATAGTACATGACATAAGT 57.629 33.333 0.00 0.00 34.74 2.24
203 204 9.586435 TCAACACTGAATAGTACATGACATAAG 57.414 33.333 0.00 0.00 34.74 1.73
204 205 9.936759 TTCAACACTGAATAGTACATGACATAA 57.063 29.630 0.00 0.00 36.62 1.90
230 231 9.830975 ACAGCTCCTAAAACAAAAATAACAAAT 57.169 25.926 0.00 0.00 0.00 2.32
231 232 9.092876 CACAGCTCCTAAAACAAAAATAACAAA 57.907 29.630 0.00 0.00 0.00 2.83
232 233 8.254508 ACACAGCTCCTAAAACAAAAATAACAA 58.745 29.630 0.00 0.00 0.00 2.83
233 234 7.777095 ACACAGCTCCTAAAACAAAAATAACA 58.223 30.769 0.00 0.00 0.00 2.41
234 235 8.642908 AACACAGCTCCTAAAACAAAAATAAC 57.357 30.769 0.00 0.00 0.00 1.89
235 236 9.308318 GAAACACAGCTCCTAAAACAAAAATAA 57.692 29.630 0.00 0.00 0.00 1.40
236 237 7.646130 CGAAACACAGCTCCTAAAACAAAAATA 59.354 33.333 0.00 0.00 0.00 1.40
237 238 6.475402 CGAAACACAGCTCCTAAAACAAAAAT 59.525 34.615 0.00 0.00 0.00 1.82
238 239 5.802956 CGAAACACAGCTCCTAAAACAAAAA 59.197 36.000 0.00 0.00 0.00 1.94
239 240 5.124138 TCGAAACACAGCTCCTAAAACAAAA 59.876 36.000 0.00 0.00 0.00 2.44
240 241 4.636648 TCGAAACACAGCTCCTAAAACAAA 59.363 37.500 0.00 0.00 0.00 2.83
241 242 4.193090 TCGAAACACAGCTCCTAAAACAA 58.807 39.130 0.00 0.00 0.00 2.83
242 243 3.799366 TCGAAACACAGCTCCTAAAACA 58.201 40.909 0.00 0.00 0.00 2.83
243 244 4.806342 TTCGAAACACAGCTCCTAAAAC 57.194 40.909 0.00 0.00 0.00 2.43
244 245 6.385649 AAATTCGAAACACAGCTCCTAAAA 57.614 33.333 0.00 0.00 0.00 1.52
245 246 6.038825 TCAAAATTCGAAACACAGCTCCTAAA 59.961 34.615 0.00 0.00 0.00 1.85
246 247 5.529430 TCAAAATTCGAAACACAGCTCCTAA 59.471 36.000 0.00 0.00 0.00 2.69
247 248 5.049680 GTCAAAATTCGAAACACAGCTCCTA 60.050 40.000 0.00 0.00 0.00 2.94
248 249 3.882888 TCAAAATTCGAAACACAGCTCCT 59.117 39.130 0.00 0.00 0.00 3.69
249 250 3.975035 GTCAAAATTCGAAACACAGCTCC 59.025 43.478 0.00 0.00 0.00 4.70
250 251 4.848757 AGTCAAAATTCGAAACACAGCTC 58.151 39.130 0.00 0.00 0.00 4.09
251 252 4.900635 AGTCAAAATTCGAAACACAGCT 57.099 36.364 0.00 0.00 0.00 4.24
252 253 5.034152 TCAAGTCAAAATTCGAAACACAGC 58.966 37.500 0.00 0.00 0.00 4.40
253 254 7.504922 TTTCAAGTCAAAATTCGAAACACAG 57.495 32.000 0.00 0.00 0.00 3.66
254 255 8.472683 AATTTCAAGTCAAAATTCGAAACACA 57.527 26.923 0.00 0.00 32.27 3.72
255 256 9.753669 AAAATTTCAAGTCAAAATTCGAAACAC 57.246 25.926 0.00 0.00 35.75 3.32
256 257 9.752274 CAAAATTTCAAGTCAAAATTCGAAACA 57.248 25.926 0.00 0.00 35.75 2.83
257 258 9.753669 ACAAAATTTCAAGTCAAAATTCGAAAC 57.246 25.926 0.00 0.00 35.75 2.78
258 259 9.752274 CACAAAATTTCAAGTCAAAATTCGAAA 57.248 25.926 0.00 0.00 35.75 3.46
259 260 9.144747 TCACAAAATTTCAAGTCAAAATTCGAA 57.855 25.926 0.00 0.00 35.75 3.71
260 261 8.694975 TCACAAAATTTCAAGTCAAAATTCGA 57.305 26.923 0.00 0.00 35.75 3.71
261 262 9.752274 TTTCACAAAATTTCAAGTCAAAATTCG 57.248 25.926 0.00 0.00 35.75 3.34
268 269 9.698309 TGTAGTTTTTCACAAAATTTCAAGTCA 57.302 25.926 0.00 0.00 34.35 3.41
279 280 9.862371 ACACAACATAATGTAGTTTTTCACAAA 57.138 25.926 0.00 0.00 30.84 2.83
280 281 9.509855 GACACAACATAATGTAGTTTTTCACAA 57.490 29.630 0.00 0.00 30.84 3.33
281 282 7.853437 CGACACAACATAATGTAGTTTTTCACA 59.147 33.333 0.00 0.00 30.84 3.58
282 283 8.065407 TCGACACAACATAATGTAGTTTTTCAC 58.935 33.333 0.00 0.00 30.84 3.18
283 284 8.144155 TCGACACAACATAATGTAGTTTTTCA 57.856 30.769 0.00 0.00 30.84 2.69
284 285 9.051027 CATCGACACAACATAATGTAGTTTTTC 57.949 33.333 0.00 0.00 30.84 2.29
285 286 8.564574 ACATCGACACAACATAATGTAGTTTTT 58.435 29.630 0.00 0.00 30.84 1.94
286 287 8.015087 CACATCGACACAACATAATGTAGTTTT 58.985 33.333 0.00 0.00 30.84 2.43
287 288 7.518161 CACATCGACACAACATAATGTAGTTT 58.482 34.615 0.00 0.00 30.84 2.66
288 289 6.402118 GCACATCGACACAACATAATGTAGTT 60.402 38.462 0.00 0.00 30.84 2.24
289 290 5.063438 GCACATCGACACAACATAATGTAGT 59.937 40.000 0.00 0.00 30.84 2.73
290 291 5.492854 GCACATCGACACAACATAATGTAG 58.507 41.667 0.00 0.00 30.84 2.74
291 292 4.331443 GGCACATCGACACAACATAATGTA 59.669 41.667 0.00 0.00 30.84 2.29
292 293 3.126858 GGCACATCGACACAACATAATGT 59.873 43.478 0.00 0.00 0.00 2.71
293 294 3.126686 TGGCACATCGACACAACATAATG 59.873 43.478 0.00 0.00 0.00 1.90
294 295 3.126858 GTGGCACATCGACACAACATAAT 59.873 43.478 13.86 0.00 44.52 1.28
295 296 2.482336 GTGGCACATCGACACAACATAA 59.518 45.455 13.86 0.00 44.52 1.90
296 297 2.073056 GTGGCACATCGACACAACATA 58.927 47.619 13.86 0.00 44.52 2.29
297 298 0.874390 GTGGCACATCGACACAACAT 59.126 50.000 13.86 0.00 44.52 2.71
298 299 0.462759 TGTGGCACATCGACACAACA 60.463 50.000 17.96 0.00 44.52 3.33
299 300 0.874390 ATGTGGCACATCGACACAAC 59.126 50.000 26.78 0.00 46.74 3.32
300 301 1.603456 AATGTGGCACATCGACACAA 58.397 45.000 31.47 1.94 46.74 3.33
302 303 2.704725 AAAATGTGGCACATCGACAC 57.295 45.000 31.47 0.00 44.52 3.67
333 334 9.684448 TCAAGTCGCATATTTTAAATGTTTGAA 57.316 25.926 0.00 0.00 0.00 2.69
334 335 9.340695 CTCAAGTCGCATATTTTAAATGTTTGA 57.659 29.630 0.00 0.50 0.00 2.69
335 336 9.128107 ACTCAAGTCGCATATTTTAAATGTTTG 57.872 29.630 0.00 0.00 0.00 2.93
336 337 9.691362 AACTCAAGTCGCATATTTTAAATGTTT 57.309 25.926 0.00 0.00 0.00 2.83
337 338 9.691362 AAACTCAAGTCGCATATTTTAAATGTT 57.309 25.926 0.00 0.00 0.00 2.71
338 339 9.128107 CAAACTCAAGTCGCATATTTTAAATGT 57.872 29.630 0.00 0.00 0.00 2.71
339 340 8.586273 CCAAACTCAAGTCGCATATTTTAAATG 58.414 33.333 0.00 0.00 0.00 2.32
340 341 8.303876 ACCAAACTCAAGTCGCATATTTTAAAT 58.696 29.630 0.00 0.00 0.00 1.40
341 342 7.593273 CACCAAACTCAAGTCGCATATTTTAAA 59.407 33.333 0.00 0.00 0.00 1.52
342 343 7.081349 CACCAAACTCAAGTCGCATATTTTAA 58.919 34.615 0.00 0.00 0.00 1.52
343 344 6.607689 CACCAAACTCAAGTCGCATATTTTA 58.392 36.000 0.00 0.00 0.00 1.52
344 345 5.460646 CACCAAACTCAAGTCGCATATTTT 58.539 37.500 0.00 0.00 0.00 1.82
345 346 4.615912 GCACCAAACTCAAGTCGCATATTT 60.616 41.667 0.00 0.00 0.00 1.40
346 347 3.119849 GCACCAAACTCAAGTCGCATATT 60.120 43.478 0.00 0.00 0.00 1.28
347 348 2.420022 GCACCAAACTCAAGTCGCATAT 59.580 45.455 0.00 0.00 0.00 1.78
348 349 1.804151 GCACCAAACTCAAGTCGCATA 59.196 47.619 0.00 0.00 0.00 3.14
349 350 0.593128 GCACCAAACTCAAGTCGCAT 59.407 50.000 0.00 0.00 0.00 4.73
350 351 0.746204 TGCACCAAACTCAAGTCGCA 60.746 50.000 0.00 0.00 0.00 5.10
351 352 0.317020 GTGCACCAAACTCAAGTCGC 60.317 55.000 5.22 0.00 0.00 5.19
352 353 0.307760 GGTGCACCAAACTCAAGTCG 59.692 55.000 31.23 0.00 35.64 4.18
353 354 0.307760 CGGTGCACCAAACTCAAGTC 59.692 55.000 34.16 3.97 35.14 3.01
354 355 1.101049 CCGGTGCACCAAACTCAAGT 61.101 55.000 34.16 0.00 35.14 3.16
355 356 1.101049 ACCGGTGCACCAAACTCAAG 61.101 55.000 34.16 15.69 35.14 3.02
356 357 0.180642 TACCGGTGCACCAAACTCAA 59.819 50.000 34.16 10.05 35.14 3.02
357 358 0.250124 CTACCGGTGCACCAAACTCA 60.250 55.000 34.16 12.32 35.14 3.41
358 359 1.574702 GCTACCGGTGCACCAAACTC 61.575 60.000 34.16 16.47 35.14 3.01
359 360 1.599797 GCTACCGGTGCACCAAACT 60.600 57.895 34.16 15.63 35.14 2.66
360 361 1.894756 TGCTACCGGTGCACCAAAC 60.895 57.895 34.16 18.62 35.31 2.93
361 362 2.511403 TGCTACCGGTGCACCAAA 59.489 55.556 34.16 17.91 35.31 3.28
366 367 3.108288 TTGTGGTGCTACCGGTGCA 62.108 57.895 19.93 21.51 42.58 4.57
367 368 2.281208 TTGTGGTGCTACCGGTGC 60.281 61.111 19.93 19.04 42.58 5.01
368 369 2.325082 GCTTGTGGTGCTACCGGTG 61.325 63.158 19.93 8.61 42.58 4.94
369 370 2.032071 GCTTGTGGTGCTACCGGT 59.968 61.111 13.98 13.98 42.58 5.28
370 371 2.031919 TGCTTGTGGTGCTACCGG 59.968 61.111 0.00 0.00 42.58 5.28
371 372 2.325082 GGTGCTTGTGGTGCTACCG 61.325 63.158 0.00 0.00 42.58 4.02
372 373 2.325082 CGGTGCTTGTGGTGCTACC 61.325 63.158 0.00 0.00 39.22 3.18
373 374 0.673644 ATCGGTGCTTGTGGTGCTAC 60.674 55.000 0.00 0.00 0.00 3.58
374 375 0.673333 CATCGGTGCTTGTGGTGCTA 60.673 55.000 0.00 0.00 0.00 3.49
375 376 1.968017 CATCGGTGCTTGTGGTGCT 60.968 57.895 0.00 0.00 0.00 4.40
376 377 2.562912 CATCGGTGCTTGTGGTGC 59.437 61.111 0.00 0.00 0.00 5.01
386 387 3.062763 GAGAATATCTGGTGCATCGGTG 58.937 50.000 5.52 0.00 0.00 4.94
387 388 2.037772 GGAGAATATCTGGTGCATCGGT 59.962 50.000 5.52 0.00 0.00 4.69
388 389 2.613977 GGGAGAATATCTGGTGCATCGG 60.614 54.545 0.00 0.00 0.00 4.18
389 390 2.693069 GGGAGAATATCTGGTGCATCG 58.307 52.381 0.00 0.00 0.00 3.84
390 391 2.693069 CGGGAGAATATCTGGTGCATC 58.307 52.381 0.00 0.00 0.00 3.91
391 392 1.271054 GCGGGAGAATATCTGGTGCAT 60.271 52.381 0.00 0.00 0.00 3.96
392 393 0.106708 GCGGGAGAATATCTGGTGCA 59.893 55.000 0.00 0.00 0.00 4.57
393 394 0.946221 CGCGGGAGAATATCTGGTGC 60.946 60.000 0.00 0.00 0.00 5.01
394 395 0.319900 CCGCGGGAGAATATCTGGTG 60.320 60.000 20.10 0.00 0.00 4.17
395 396 1.472662 CCCGCGGGAGAATATCTGGT 61.473 60.000 41.82 0.00 37.50 4.00
396 397 1.185618 TCCCGCGGGAGAATATCTGG 61.186 60.000 42.66 13.31 39.76 3.86
397 398 2.351777 TCCCGCGGGAGAATATCTG 58.648 57.895 42.66 13.90 39.76 2.90
398 399 4.945645 TCCCGCGGGAGAATATCT 57.054 55.556 42.66 0.00 39.76 1.98
411 412 2.904866 CTCTCGGCTCTCCTCCCG 60.905 72.222 0.00 0.00 45.64 5.14
412 413 2.520741 CCTCTCGGCTCTCCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
413 414 1.826487 GTCCTCTCGGCTCTCCTCC 60.826 68.421 0.00 0.00 0.00 4.30
414 415 1.077357 TGTCCTCTCGGCTCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
415 416 1.077068 CTGTCCTCTCGGCTCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
416 417 2.781158 GCTGTCCTCTCGGCTCTCC 61.781 68.421 0.00 0.00 36.83 3.71
417 418 2.804856 GCTGTCCTCTCGGCTCTC 59.195 66.667 0.00 0.00 36.83 3.20
418 419 3.137459 CGCTGTCCTCTCGGCTCT 61.137 66.667 0.00 0.00 37.54 4.09
419 420 4.200283 CCGCTGTCCTCTCGGCTC 62.200 72.222 0.00 0.00 37.54 4.70
422 423 2.829003 TAGCCGCTGTCCTCTCGG 60.829 66.667 2.16 0.00 45.46 4.63
423 424 2.718731 CTAGCCGCTGTCCTCTCG 59.281 66.667 2.16 0.00 0.00 4.04
424 425 2.494530 CCCTAGCCGCTGTCCTCTC 61.495 68.421 2.16 0.00 0.00 3.20
425 426 2.443016 CCCTAGCCGCTGTCCTCT 60.443 66.667 2.16 0.00 0.00 3.69
426 427 2.299503 GAACCCTAGCCGCTGTCCTC 62.300 65.000 2.16 0.00 0.00 3.71
427 428 2.284699 AACCCTAGCCGCTGTCCT 60.285 61.111 2.16 0.00 0.00 3.85
428 429 2.187163 GAACCCTAGCCGCTGTCC 59.813 66.667 2.16 0.00 0.00 4.02
429 430 2.187163 GGAACCCTAGCCGCTGTC 59.813 66.667 2.16 0.00 0.00 3.51
441 442 1.385368 GGGGTTTACCTGGGGAACC 59.615 63.158 19.45 19.45 44.96 3.62
442 443 0.483770 TTGGGGTTTACCTGGGGAAC 59.516 55.000 0.00 2.23 40.03 3.62
443 444 0.781278 CTTGGGGTTTACCTGGGGAA 59.219 55.000 0.00 0.00 40.03 3.97
444 445 0.103823 TCTTGGGGTTTACCTGGGGA 60.104 55.000 0.00 0.00 40.03 4.81
445 446 1.007607 ATCTTGGGGTTTACCTGGGG 58.992 55.000 0.00 0.00 40.03 4.96
446 447 2.831526 CAAATCTTGGGGTTTACCTGGG 59.168 50.000 0.00 0.00 40.03 4.45
447 448 3.763897 CTCAAATCTTGGGGTTTACCTGG 59.236 47.826 0.00 0.00 40.03 4.45
448 449 3.763897 CCTCAAATCTTGGGGTTTACCTG 59.236 47.826 0.00 0.00 46.60 4.00
449 450 4.047627 CCTCAAATCTTGGGGTTTACCT 57.952 45.455 0.00 0.00 46.60 3.08
457 458 3.891366 ACAAACACTCCTCAAATCTTGGG 59.109 43.478 0.00 0.00 0.00 4.12
458 459 4.319766 CGACAAACACTCCTCAAATCTTGG 60.320 45.833 0.00 0.00 0.00 3.61
512 513 8.540492 GGTAGTGAACATATGTTTCGTCATAAG 58.460 37.037 21.63 0.00 38.56 1.73
518 519 5.046878 TGAGGGTAGTGAACATATGTTTCGT 60.047 40.000 21.63 11.57 38.56 3.85
608 609 3.027974 ACTACGAACCAAGAGAGCAAC 57.972 47.619 0.00 0.00 0.00 4.17
624 625 7.658179 TCATGTGTGATTTCTGAGAAACTAC 57.342 36.000 10.18 12.17 0.00 2.73
648 663 9.537192 TTGCTTAGCGTACAAGTTACATATATT 57.463 29.630 0.00 0.00 0.00 1.28
665 684 1.930371 GCTGGTTTGGTTTGCTTAGCG 60.930 52.381 0.00 0.00 0.00 4.26
736 758 1.828979 TGGGGAGAACGGTAAAATGC 58.171 50.000 0.00 0.00 0.00 3.56
835 857 2.904866 TGTTCGGCTTGGTGTGCC 60.905 61.111 0.00 0.00 46.42 5.01
866 888 5.831103 AGTTTCATTGGGATTACAGATGGT 58.169 37.500 0.00 0.00 0.00 3.55
910 932 3.247006 ACGTAGTACCAGCAAATGAGG 57.753 47.619 0.00 0.00 41.94 3.86
1017 1040 2.435586 ACGCTGCAGCAGATCACC 60.436 61.111 36.03 6.75 42.21 4.02
1166 1189 3.583882 ATGTTGACCTTGGGCGGGG 62.584 63.158 0.00 0.00 0.00 5.73
1351 1374 2.410322 ATCACCTTGTCCGCCTGCAA 62.410 55.000 0.00 0.00 0.00 4.08
1369 1392 1.750778 GATGAATTGGGGCGTGAACAT 59.249 47.619 0.00 0.00 0.00 2.71
1402 1425 1.598130 GCAGGTCGAACAGCTTGGT 60.598 57.895 11.02 0.00 0.00 3.67
1408 1431 0.673644 AAATCCGGCAGGTCGAACAG 60.674 55.000 1.87 0.00 39.05 3.16
1411 1434 0.251916 ATGAAATCCGGCAGGTCGAA 59.748 50.000 1.81 0.00 39.05 3.71
1486 1509 1.101331 GAGCTGGCCCTCATTTTGAG 58.899 55.000 0.00 0.00 43.91 3.02
1507 1530 1.071299 TGATGCTGCAAGTCACCGT 59.929 52.632 6.36 0.00 35.30 4.83
1623 1646 3.056821 TCCCACACTTCTTGATAGACACG 60.057 47.826 0.00 0.00 0.00 4.49
1629 1656 4.160329 ACTCACTCCCACACTTCTTGATA 58.840 43.478 0.00 0.00 0.00 2.15
1638 1665 3.487120 AAAAGGTACTCACTCCCACAC 57.513 47.619 0.00 0.00 38.49 3.82
1717 1744 8.469902 GCGCTTAATTACGTATAGCATATACTG 58.530 37.037 0.00 2.82 0.00 2.74
1729 1762 5.580661 TGTATGAGTGCGCTTAATTACGTA 58.419 37.500 9.73 0.00 0.00 3.57
1730 1763 4.426416 TGTATGAGTGCGCTTAATTACGT 58.574 39.130 9.73 0.00 0.00 3.57
1731 1764 5.383984 TTGTATGAGTGCGCTTAATTACG 57.616 39.130 9.73 0.00 0.00 3.18
1732 1765 8.548721 ACTAATTGTATGAGTGCGCTTAATTAC 58.451 33.333 9.73 6.22 0.00 1.89
1733 1766 8.657074 ACTAATTGTATGAGTGCGCTTAATTA 57.343 30.769 9.73 7.58 0.00 1.40
1734 1767 7.553881 ACTAATTGTATGAGTGCGCTTAATT 57.446 32.000 9.73 6.88 0.00 1.40
1735 1768 8.833231 ATACTAATTGTATGAGTGCGCTTAAT 57.167 30.769 9.73 1.16 40.12 1.40
1741 1781 5.059832 GCGAGATACTAATTGTATGAGTGCG 59.940 44.000 5.59 0.00 41.55 5.34
1755 1795 1.091197 TCACACGCGGCGAGATACTA 61.091 55.000 30.94 4.45 0.00 1.82
1761 1801 3.112075 ATTGTCACACGCGGCGAG 61.112 61.111 30.94 24.15 0.00 5.03
1764 1804 0.996727 GAAACATTGTCACACGCGGC 60.997 55.000 12.47 0.00 0.00 6.53
1774 1814 4.050553 CTGCACAAATTCGGAAACATTGT 58.949 39.130 11.68 11.68 34.74 2.71
1826 1870 5.697633 GCAATGTGGATTTTGTCAAGAACAT 59.302 36.000 0.00 0.00 37.82 2.71
1827 1871 5.049167 GCAATGTGGATTTTGTCAAGAACA 58.951 37.500 0.00 0.00 35.59 3.18
1828 1872 5.049167 TGCAATGTGGATTTTGTCAAGAAC 58.951 37.500 0.00 0.00 0.00 3.01
1834 1878 5.527951 TGTAAGTGCAATGTGGATTTTGTC 58.472 37.500 0.00 0.00 0.00 3.18
1839 1883 5.528043 TGTTTGTAAGTGCAATGTGGATT 57.472 34.783 0.00 0.00 0.00 3.01
1847 1891 3.605922 CGATTCGCTGTTTGTAAGTGCAA 60.606 43.478 0.00 0.00 0.00 4.08
1848 1892 2.096466 CGATTCGCTGTTTGTAAGTGCA 60.096 45.455 0.00 0.00 0.00 4.57
1852 1896 4.149922 TGAGAACGATTCGCTGTTTGTAAG 59.850 41.667 5.86 0.00 34.02 2.34
1885 1979 6.260377 TGATGATTTGATGTCTCGAATTTGC 58.740 36.000 0.00 0.00 35.92 3.68
1906 2002 6.776116 AGTATTCATCAAACATCATGGCTGAT 59.224 34.615 0.00 0.00 43.02 2.90
1910 2006 5.533903 AGGAGTATTCATCAAACATCATGGC 59.466 40.000 0.00 0.00 0.00 4.40
1911 2007 8.152898 TCTAGGAGTATTCATCAAACATCATGG 58.847 37.037 0.00 0.00 0.00 3.66
1912 2008 9.722184 ATCTAGGAGTATTCATCAAACATCATG 57.278 33.333 0.00 0.00 0.00 3.07
1915 2011 9.868277 CCTATCTAGGAGTATTCATCAAACATC 57.132 37.037 0.00 0.00 46.63 3.06
1978 2074 2.550606 GCCCGTAGTTCACAACAATGAA 59.449 45.455 0.00 0.00 36.23 2.57
1979 2075 2.147958 GCCCGTAGTTCACAACAATGA 58.852 47.619 0.00 0.00 0.00 2.57
1980 2076 1.876799 TGCCCGTAGTTCACAACAATG 59.123 47.619 0.00 0.00 0.00 2.82
1981 2077 1.877443 GTGCCCGTAGTTCACAACAAT 59.123 47.619 0.00 0.00 0.00 2.71
1982 2078 1.301423 GTGCCCGTAGTTCACAACAA 58.699 50.000 0.00 0.00 0.00 2.83
1983 2079 0.178301 TGTGCCCGTAGTTCACAACA 59.822 50.000 0.00 0.00 37.73 3.33
1984 2080 1.196808 CATGTGCCCGTAGTTCACAAC 59.803 52.381 0.00 0.00 42.97 3.32
1985 2081 1.070914 TCATGTGCCCGTAGTTCACAA 59.929 47.619 0.00 0.00 42.97 3.33
1986 2082 0.682292 TCATGTGCCCGTAGTTCACA 59.318 50.000 0.00 0.00 43.72 3.58
1987 2083 1.359848 CTCATGTGCCCGTAGTTCAC 58.640 55.000 0.00 0.00 0.00 3.18
1988 2084 0.391130 GCTCATGTGCCCGTAGTTCA 60.391 55.000 8.59 0.00 0.00 3.18
1989 2085 0.108138 AGCTCATGTGCCCGTAGTTC 60.108 55.000 15.81 0.00 0.00 3.01
1990 2086 0.108138 GAGCTCATGTGCCCGTAGTT 60.108 55.000 15.81 0.00 0.00 2.24
1991 2087 1.517832 GAGCTCATGTGCCCGTAGT 59.482 57.895 15.81 0.00 0.00 2.73
1992 2088 1.589993 CGAGCTCATGTGCCCGTAG 60.590 63.158 15.40 0.41 29.67 3.51
1993 2089 1.391933 ATCGAGCTCATGTGCCCGTA 61.392 55.000 20.53 10.00 35.69 4.02
1994 2090 2.725312 ATCGAGCTCATGTGCCCGT 61.725 57.895 20.53 7.93 35.69 5.28
1995 2091 2.107750 ATCGAGCTCATGTGCCCG 59.892 61.111 16.30 16.30 35.52 6.13
1996 2092 0.104855 TACATCGAGCTCATGTGCCC 59.895 55.000 27.68 3.54 35.95 5.36
1997 2093 1.939974 TTACATCGAGCTCATGTGCC 58.060 50.000 27.68 7.08 35.95 5.01
1998 2094 4.507756 TGTTATTACATCGAGCTCATGTGC 59.492 41.667 27.68 11.79 35.95 4.57
1999 2095 5.050769 GGTGTTATTACATCGAGCTCATGTG 60.051 44.000 27.68 19.30 36.50 3.21
2000 2096 5.050490 GGTGTTATTACATCGAGCTCATGT 58.950 41.667 25.03 25.03 36.50 3.21
2001 2097 4.449068 GGGTGTTATTACATCGAGCTCATG 59.551 45.833 15.40 17.45 36.18 3.07
2002 2098 4.503296 GGGGTGTTATTACATCGAGCTCAT 60.503 45.833 15.40 3.67 36.18 2.90
2003 2099 3.181469 GGGGTGTTATTACATCGAGCTCA 60.181 47.826 15.40 1.08 36.18 4.26
2004 2100 3.391049 GGGGTGTTATTACATCGAGCTC 58.609 50.000 2.73 2.73 36.18 4.09
2005 2101 2.104281 GGGGGTGTTATTACATCGAGCT 59.896 50.000 0.00 0.00 36.18 4.09
2006 2102 2.158871 TGGGGGTGTTATTACATCGAGC 60.159 50.000 0.00 0.00 36.18 5.03
2042 2144 0.036388 GTGCTGGCCTGTTAGTGCTA 60.036 55.000 11.69 0.00 0.00 3.49
2050 2152 3.081804 GTTGTTATTAGTGCTGGCCTGT 58.918 45.455 11.69 0.00 0.00 4.00
2051 2153 2.095853 CGTTGTTATTAGTGCTGGCCTG 59.904 50.000 3.32 4.26 0.00 4.85
2052 2154 2.027561 TCGTTGTTATTAGTGCTGGCCT 60.028 45.455 3.32 0.00 0.00 5.19
2053 2155 2.352388 TCGTTGTTATTAGTGCTGGCC 58.648 47.619 0.00 0.00 0.00 5.36
2054 2156 4.094294 TCAATCGTTGTTATTAGTGCTGGC 59.906 41.667 0.00 0.00 0.00 4.85
2055 2157 5.794687 TCAATCGTTGTTATTAGTGCTGG 57.205 39.130 0.00 0.00 0.00 4.85
2056 2158 7.060600 TCTTCAATCGTTGTTATTAGTGCTG 57.939 36.000 0.00 0.00 0.00 4.41
2057 2159 7.667043 TTCTTCAATCGTTGTTATTAGTGCT 57.333 32.000 0.00 0.00 0.00 4.40
2058 2160 7.006210 CGTTTCTTCAATCGTTGTTATTAGTGC 59.994 37.037 0.00 0.00 0.00 4.40
2059 2161 7.006210 GCGTTTCTTCAATCGTTGTTATTAGTG 59.994 37.037 0.00 0.00 0.00 2.74
2060 2162 7.013529 GCGTTTCTTCAATCGTTGTTATTAGT 58.986 34.615 0.00 0.00 0.00 2.24
2061 2163 6.464834 GGCGTTTCTTCAATCGTTGTTATTAG 59.535 38.462 0.00 0.00 0.00 1.73
2062 2164 6.073167 TGGCGTTTCTTCAATCGTTGTTATTA 60.073 34.615 0.00 0.00 0.00 0.98
2063 2165 5.151389 GGCGTTTCTTCAATCGTTGTTATT 58.849 37.500 0.00 0.00 0.00 1.40
2064 2166 4.214545 TGGCGTTTCTTCAATCGTTGTTAT 59.785 37.500 0.00 0.00 0.00 1.89
2072 2174 1.068541 GTGGGTGGCGTTTCTTCAATC 60.069 52.381 0.00 0.00 0.00 2.67
2261 2363 0.967887 AGCAGCAGGAAGTAGAGCGA 60.968 55.000 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.