>input_sequence_74996
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--------------------------------------------------------------ATGAAGAGGAAGCCCGTG
GTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACCGTGTTCCG
GCCGCGCCCGCCGCACGTGGTGGCGACGGTGGTGAGCACGACGTTTACTCAATTCGACGTGGCCTCCGCCCCGCCCAAGG
TCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGGTGACGGAG
CTGACGTACTACGGCTCGCCTGTGGGGCAGTCGGTGGTGCTCGCGGGGGAGGTCGGCGCGCGAACGACGCAGACCGTCGG
CGGGACGGTGGTGTTGCAGGCGGACAAGGTGATGTTCACGCCCCAATTCATCCAGGAACTGGCTACCAAGCTGTTCGACC
TGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGCTCAAAATGAGG
GCCAGCTCGACGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCATCTCCGACTGCACGTCCACGGTTAA
TGTCGGTTAA----------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G219900
TATCCGGTGCACCAACATTTGTGGTGCTACCGGTGCACCGCATGCCGTACAACATTTTTAAAAATCTGAAAAAATTCGAG
CACATTGACATAACATCAACGTATGTTGTCATAAAATTTTGTGTCAAAATTTGAAATATTTTTTGAGATACAAAAATGAC
AAAATTGACATCAATGTGATAATGGGCCAAATCTAAAGCCCAACTTATGTCATGTACTATTCAGTGTTGAATTTGTTATT
TTTGTTTTAGGAGCTGTGTTTCGAATTTTGACTTGAAATTTTGTGAAAAACTACATTATGTTGTGTCGATGTGCCACATT
TTTTTCAAAAAATTTCAAACATTTAAAATATGCGACTTGAGTTTGGTGCACCGGTAGCACCACAAGCACCGATGCACCAG
ATATTCTCCCGCGGGAGGAGAGCCGAGAGGACAGCGGCTAGGGTTCCCCAGGTAAACCCCAAGATTTGAGGAGTGTTTGT
CGGGCAAAATTGCTAAACTTGCCGGATTCAAACTTATGACGAAACATATGTTCACTACCCTCAGGTAATATTATCTAACA
TGATGCAGTTACAGGAAAAGTTATGTACATGATGACAGTTGCGCAAGGGTTGCTCTCTTGGTTCG--------------T
AGTTTCTCAGAAATCACACATGA----ATATATGTAACTTGTACGCTAAGCAAACCAAACCAGCCGTTTAGTTTGAGGTA
TAACATGCGAGACGTACTTCTATACGTAC---ATCCTGCATTTTACCGTTCTCCCCATACCAGAGGCTGGGAGATTTTCC
AGACGCTCCCAAATCTGCAAAGAAACCAAACAAAACAACACGGATAACAATGCATGGGCACACCAAGCCGAACAGCCAGA
AACAAAAACCATCTGTAATCCCAATGAAACTTCCCGTCCTACATATGGCCGCCTCATTTGCTGGTACTACGTCCCATTGA
CATCCAAACC-AAAGATATTCATCAAAGGCTTCAAGGAGCACGCACCAGCCGATTCGATAGGATGAAGAGGAAGCCCGTG
GTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACCGTGTTCCG
GCCGCGCCCGCCGCACGTGGTGGCGACGGTGGTGAGCACGACGTTTACTCAATTCGACGTGGCCTCCGCCCCGCCCAAGG
TCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGGTGACGGAG
CTGACGTACTACGGCTCGCCTGTGGGGCAGTCGGTGGTGCTCGCGGGGGAGGTCGGCGCGCGAACGACGCAGACCGTCGG
CGGGACGGTGGTGTTGCAGGCGGACAAGGTGATGTTCACGCCCCAATTCATCCAGGAACTGGCTACCAAGCTGTTCGACC
TGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGCTCAAAATGAGG
GCCAGCTCGACGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCATCTCCGACTGCACGTCCACGGTTAA
TGTCGGTTAACTATTTTTACCTGTGCGTGCGAGGAGCCCACACGGC----GTGTCTATCAAGAAGTGTGGGAGTGAGTAC
CTTTTTTCGGTGAGTTTACAAGCTTTTCTCTTAGATTAGAGGGTTTTGTATAAATAATTAATAC-----AGTA-TATGCT
ATACGTAA-------TTAAGCGCACTCATACAATTAGTATCTCGCCGCGTGTGACAATGTTTCCGAATTTGTGCAGCCTG
AGAATGCA----GAGAAAAATAAGAGATGATGTTCTTGACAAAATCCACATTGCACTT----------------------
----------------------------ACAAACAGCGAATCGTTCTCAAATACTAGCG--CAAATTCGAGACATCAAAT
CATCAGCCATGATGTTTGATGAATACTCCTAGATAGGAAGATTTTTTTTCCAGCAAAAAAGAATGCAACAATGTTCATTG
TTGTGAACTACGGGCACATGAGCTCGATGTAATAACA------CCCCCACTAAGCTTCAATTCTAGCACTAACAGGCCAG
CACTAATAACAACGATTGAAGAAACGCCACCCACTTTAAAAATGATCAAGAAACGCCACAACCGAAAAGTTCCGCCGTCC
CTCGTGCTTCTTCCAGACAACTGCTGCAGCCAAACATGGCAAGGATCAAGAAGAAGGCCGCCGTGATATGCTGCTGCGCG
TTGCTCGCGGCGTCCCTCCTGCTCGGCGCCGCCCTCGCCACCTCGCTCTACTTCCTGCTGCTCCGCCCGCACCCGCCGCG
CGTGGTGGCAACGGCGGTGGAGACGCAGCTCGCCGCCTTCACCATCCTCCCGCCGGCGCTCAACTTCTCCCTGGCCGTCG
CCGTCACCGTGCACAACCCGAGCCACGCGCCGTTCCGGTACGGCGCGGTGGTCACCGCGGTGACGTACCACGGCGCGGCG
GTGGGGCGGTCTGTCGCGCCCGCGGGGAAGATCCCGGCGCGGTCGGCGAGGACGGTCGGGGCGCGGGTGCGGGTGGACGC
GGCGAGGGTCACCCTGAGCAGGCACTACGTGGTGGACGTTGTCGCAGGC
>chr2B_460
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-----------------------------------------------------------CAAGATTTGAGGAGTGTTTGT
CGGGCAAAATTGCTAAACTTGCCGGATTCAAATTTATGGCGAAACATATGTTCACTACCCTCAGGTAATATTATCTAACA
TGATGCAGTTACAGGAAAAGTTATGTACATG------------------TTGCTCTCTAGGTTCTTAGTTTCATTATTTT
AGTTTCCCAGAAATCACACATGTATAAGTAC---TAACTTGTAGGCTAAGCAAACCAAACCAGCCGTTTAGTTTGAGGTA
TAGCATGCGAGACGTACTTCTATACGTACTCCATCCTACATTTTACCGTTCTTCCCAGACCAGAGCCTGGGAGATTTTCC
AGACGCTCCCAAATCTGCAAACGAACCAAACAAAACAACACGGATAACAATGCATGCGCACACCAAGCCGAGCAGCCAGA
AACAAAATTCATCTGTAATCCCAATGAAACTTCCCGTCCTACATATGGCCGTCTCCTTTCCT--------GTCCCATTGA
CATCTAAACC-ATAGACATTCATCAAAGGCTTGAAGAAGCACGCACCAGCCGATTCGATAGGATGAAGAGGAAGCCCGTC
GTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACCGTGTTCCG
GCCGCGCGCGCCGCACGTGGTGGCGACGGTGGTGAGCACGACGTTTACTCAATTCGACGTGACCTCCTTCCCGCCCAAGG
TCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGGTGACGGAG
CTGACGTACTACGGCTCGCCCGTGGGGCAGTCAGTGGTGCTCGCGGGGGAGGTCGGCGCGCGAACGACACAGACCGTCGG
CGGGACGGTAGTGCTGCAGGCGGACAAGGTTGTGTTCACGCCCCAATTCGTCCAGGAACTGGCTTCCAAGTTGCTCGACC
TGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGTTAAAAATCAGG
GCCAGCTCGGCGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCACCTCCGACTGCACGTCCACGGTTAA
TGTCGGTTAACTATTTTTACCTGTGCGTGCGAGGAGCCCACACGGGCCGGGTGTCAATCAAGAACTGTGGGAGTGAGTCA
CTTTTTTCGGTGAGTTTACAAGCTTTTCTCTTAGGTTAGAGGGTTTTGTATTTGTAT-AAATAAATAATAGTACTATGCT
ACGTAGTCAACATTTTTAAGTGCACTCATACAATCAGTATTTCCCCGCGTGCGCCAATGTTTCCGAATTTGTGCAGCCTG
AGAATGCATGCAGAGAAAAATAAGAGATG---TTCTTCACAAGATCCACAAGGCAGTTACAAACAGGCAACGCTCGTTGC
TTGTTCTTGACATACAAATTCTTGAAAAACAAACAGCGAATCGTCCTCAAGTACTAGCCCAAAAATTCGAGACAACAAAT
CGTCACTGTTATTTCAATGCGCACATGATAT-------------------------------------------------
----------------------CTCGATGTAATAACATTAACGCCCCCATTAAGCTTCAATTCCAGCACTAG--------
------TAACAACAATTGAAGAAACGCCGCCCACTTTAAAAATGATCAAGAAACGCCACAACCGAAAAGTTCCGCCGTCC
CTCGTGCTTCCG---GACAACTGCTGCTGCCAAACATGGCAAGGGTCAAGAAGAAGGCCGCCGTAATATGCTGCTGCGCG
TTGCTCGCGGCGTCCCTCCTGCTCGGCGCCGCCCTCGCCACCGCGCTCTACTTCCTGCTGCTCCGCCCGCACCCGCCGCG
CGTGGTGGCAACGGCGGTGGACACGCAGCTCGCCGCCTTCACCGTCCTCCCGCCGGGGCTCAACTTCTCCCTGGCCGTCG
ACGTCACCGTGCACAACGAGGACGGT------------------------------------------------------
----------------CGCCCGCGGGGAAGATTCCGGCGCGGTCGACGAGGACGGTCGGGGCGCGGGTGCGGGTGGACGC
GGCGAGGGTCATCCTAAGCGGGCACTACGTGGTGGACGTTGTCGCAGGC
>chr2D_518
GAT-----------------------------------------------------------------------------
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----------------------------------------GAAACATATGTTCACTACCCTCAGGTAATATTATCTAACA
TTATGCAATTACTGGAAAAGTTATGTACATGATGACAGTTGCGCAAGGATTGCTCTCTTGGTTTTTAGTTTCATTATTTT
AGTTTCCCAGAAATCACACATGTACGTATATATGTAACTTGTAAGCTAAGCAAACCAAACCAGCCGTTAAGTTTGAGGTA
TAACATGCGAGACGTACTTCTATACGTAC---ATCCTCTAGTTTACCGTTCTCCCCAGACCAGAGGCTGGGAGATTTTCC
AGACGCACCCAAACCTGCAAAGAAACCAAACAAAACAACACGGATAACAATGCATGCGCACACCAAGCCGAACAGCCAGA
AACAAAATCCATCTGTAATCCCAATGAAACTCCCCGTCCTACATATGGCCGTCTCATTTGCTCGTACTACGTCCCATTGA
CATCCAAACCCAAAGATATTCATCAAAGGCTTCAACAAGCGCGCACCAGCCGATTCGATAGGATGAAGAGGAAGCCCGTC
GTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACCGTGTTCCG
GCCGCGCGCGCCGCACGTGGTGGCGACGGTGGTGAGCTCGACGTTCACTCAATTCGAAGTAACCTCCTTCCCGCCAAAGG
TCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGGTGACGGAG
CTGACGTACTACGGCTCGCCCGTGGGGCAGTCGGTGGTGCTCGCGGGGGAGGTGGGCGCGCGAACCACACAGACGGTCGG
CGGGACGGTGGTGGTACAGGCGGACAAGGTGGTGTTCACGCCCCAATTCGTCCAGGAACTGGCTTCCAAGTTGCTCGACC
TGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGTTCAAAATCAGG
GCCAGCTCGGCGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCATCTCCGACTGCACGTCCACGGTTAA
TGTCGGTTAACTATTTTTACCTGTGCGTGCGAGGAGCCCACACGGG----GTGTCAATCAAGAACTGTGGGAGTGAGTAA
CTTTTTTCGGTGAGCTTGCAAGCTTTTCTCTTGGAATAGAGGGTTTTGTATTTGTATAAAATAAATAATAGTA-TATGCT
ACGTAGTCAACATTTCTAAGTGCACTCATACAATCAGTATTTCCCCGCGTGTGCCAATGTTTCCGAATTTGTGCAGCCTG
AGAATGCATACAGAGAAAAATAAGAGATG---TTCTTCACAAGATCCACAAGGCCGTTACAACCAGGCAACCCACGTTGC
TTGTTCTTGAAATACAAATTCTTGAAAAACAAACAGCGAATCATTCTCAAATACTACCCCACAAATTCGAGAAAACGAAT
TGTCACTGTTATTTCAATGCGCACGGC-----------------------------------------------------
-------------------------------------------------CTAAGCTTCAATTCCAGCACTAG--------
------TAACAACAATTGAAGAAACGCCACCCACTTTAAAAATGATCAAGAAACGCCACAACCGAGAAGTTCCGCCGTCC
CTCGTGTTTCTTCCAGACAACTGCTGCTGCCAAACATGGCAAGGATCAAGAAGAAGGCCGCCGTGATATGCTGCTGCGCG
TTGCTCGCGGCGTCCCTCCTGCTCGGCGCCGCCCTCGCCACCGCGCTCTACTTCCTGCTGCTCCGCCCGCACCCGCCGCG
TGTGGTGGCAACGGCGGTGGACACGCAGCTCGCCGCCTTCACCGTCCTCCCGCCGGCGCTCAACTTCTCCCTGGCCGTCG
ACGTCACCGTGCACAACCCAAGCCACGCGCCGTTCCGGTACGGCGAGGTGGTCACGGCGGTGACGTACCGCGGCGCGGCG
GTGGGGCGGTCCGCCGCGCCCGCGGGGAAGATCCCGGCGCGGTCGACGAGGACGGTCGGGGCGCGGGTGCGGGTTGACGC
GGCGAGGGTCATCCTGAGCAGGCACTACATGGTGGACATTGTGGCAGGC
>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
--------------------------------S-----S-----------------------------------------
------------------------------------------------S---------------S---------------
------S---------------S--------------------S------------------------------------
-------------------------------------S-------------------S----------------------
--------------------------------------------------------S-----------------------
-------S-------------------------------------------S----------S-----------------
------------------------------------S------------------------------------------S
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-------S-----------------------------------------------------S-----SS-----------
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--------------------S-----------------------------------------------S-----------
-------------S-----------------S-----------------S--------------S-----S--S------
--------------------------------------------------------------------S-------S---
---------S----------------------------------------------------------------------
---------------------------------------------S---------S--------S--------------S
---------------------------------------------------SSS--SSS----S----------------
-SSSSSSS------------S-------------S-----S--S---------S--------------------------
-----------------------------SSS-----S----S-------SS---S------------------------
----------------------------------------------------------S---------------S-----
-S---SSSS-SS-SSSSSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S-------SSSSSSSSS
SSSSSS-------S------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------------------------------------S-------------------------------------
---------------------S---------------------S------------------------------------
S--------------------------------------------S---------S-------------S----------
-----------S-S-------------------------------S----------------------------------
-----------S-------------------------------------
>forward_625
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---------------------------------------------AGGGTTGCTCTCTTGGTTCG---------------
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>reverse_2144
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---------------------------------------------------------------TAGCACTAACAGGCCAG
CAC-----------------------------------------------------------------------------
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