Multiple sequence alignment - TraesCS2A01G219100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G219100 chr2A 100.000 4034 0 0 1 4034 206403171 206407204 0.000000e+00 7450.0
1 TraesCS2A01G219100 chr2A 90.525 781 67 7 3259 4034 720055356 720054578 0.000000e+00 1026.0
2 TraesCS2A01G219100 chr2D 95.063 3261 126 18 3 3254 191240440 191237206 0.000000e+00 5097.0
3 TraesCS2A01G219100 chr2D 91.528 779 60 6 3258 4034 399899462 399898688 0.000000e+00 1068.0
4 TraesCS2A01G219100 chr2D 90.769 780 67 5 3258 4034 58879651 58880428 0.000000e+00 1037.0
5 TraesCS2A01G219100 chr2B 92.781 3297 148 45 3 3254 248654426 248657677 0.000000e+00 4687.0
6 TraesCS2A01G219100 chr3D 91.338 785 62 6 3254 4034 253572892 253573674 0.000000e+00 1068.0
7 TraesCS2A01G219100 chr6D 90.991 777 65 5 3259 4034 296757735 296758507 0.000000e+00 1042.0
8 TraesCS2A01G219100 chr6D 85.227 88 13 0 323 410 436078180 436078093 1.540000e-14 91.6
9 TraesCS2A01G219100 chr7D 90.933 772 65 5 3267 4034 632888462 632887692 0.000000e+00 1033.0
10 TraesCS2A01G219100 chr7D 90.116 779 71 6 3259 4034 292154885 292154110 0.000000e+00 1007.0
11 TraesCS2A01G219100 chr3B 90.179 784 72 5 3254 4034 172762415 172763196 0.000000e+00 1016.0
12 TraesCS2A01G219100 chrUn 90.013 781 73 5 3257 4034 102556167 102556945 0.000000e+00 1005.0
13 TraesCS2A01G219100 chr6A 85.393 89 13 0 323 411 583002418 583002330 4.290000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G219100 chr2A 206403171 206407204 4033 False 7450 7450 100.000 1 4034 1 chr2A.!!$F1 4033
1 TraesCS2A01G219100 chr2A 720054578 720055356 778 True 1026 1026 90.525 3259 4034 1 chr2A.!!$R1 775
2 TraesCS2A01G219100 chr2D 191237206 191240440 3234 True 5097 5097 95.063 3 3254 1 chr2D.!!$R1 3251
3 TraesCS2A01G219100 chr2D 399898688 399899462 774 True 1068 1068 91.528 3258 4034 1 chr2D.!!$R2 776
4 TraesCS2A01G219100 chr2D 58879651 58880428 777 False 1037 1037 90.769 3258 4034 1 chr2D.!!$F1 776
5 TraesCS2A01G219100 chr2B 248654426 248657677 3251 False 4687 4687 92.781 3 3254 1 chr2B.!!$F1 3251
6 TraesCS2A01G219100 chr3D 253572892 253573674 782 False 1068 1068 91.338 3254 4034 1 chr3D.!!$F1 780
7 TraesCS2A01G219100 chr6D 296757735 296758507 772 False 1042 1042 90.991 3259 4034 1 chr6D.!!$F1 775
8 TraesCS2A01G219100 chr7D 632887692 632888462 770 True 1033 1033 90.933 3267 4034 1 chr7D.!!$R2 767
9 TraesCS2A01G219100 chr7D 292154110 292154885 775 True 1007 1007 90.116 3259 4034 1 chr7D.!!$R1 775
10 TraesCS2A01G219100 chr3B 172762415 172763196 781 False 1016 1016 90.179 3254 4034 1 chr3B.!!$F1 780
11 TraesCS2A01G219100 chrUn 102556167 102556945 778 False 1005 1005 90.013 3257 4034 1 chrUn.!!$F1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.110056 CTGACTGCGCGCTCAAAATT 60.110 50.0 33.29 5.11 0.00 1.82 F
503 504 0.393808 GGCAGGGAGGCGTTTCATTA 60.394 55.0 0.00 0.00 33.57 1.90 F
1373 1412 0.676466 CAGCGCACTTGGTTATCCCA 60.676 55.0 11.47 0.00 43.27 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1454 0.243636 CACCTGCACGGGAAAATTCC 59.756 55.0 1.58 3.49 46.82 3.01 R
1863 1903 0.976641 TGATGTCGAACTGGAGCCTT 59.023 50.0 0.00 0.00 0.00 4.35 R
3280 3334 0.980754 TTCTAATGCAGAGGCCGGGA 60.981 55.0 2.18 0.00 40.13 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 0.974383 GGTTTTGGGGAGAGTCTCGA 59.026 55.000 13.97 0.00 0.00 4.04
119 120 0.114560 TTTGGGGAGAGTCTCGACCT 59.885 55.000 24.57 0.00 32.12 3.85
137 138 0.110056 CTGACTGCGCGCTCAAAATT 60.110 50.000 33.29 5.11 0.00 1.82
138 139 1.128507 CTGACTGCGCGCTCAAAATTA 59.871 47.619 33.29 8.12 0.00 1.40
218 219 2.611518 CTTGTCTTCTCCATCGTGGTC 58.388 52.381 4.33 0.00 39.03 4.02
269 270 7.495934 CCGATGAACTCTTATGTTATGAACCTT 59.504 37.037 0.00 0.00 0.00 3.50
379 380 9.064706 ACTTCTGATGATGCTAATTTGGATTAG 57.935 33.333 0.00 2.57 44.94 1.73
382 383 7.446319 TCTGATGATGCTAATTTGGATTAGGTG 59.554 37.037 7.92 0.00 43.22 4.00
387 388 8.632679 TGATGCTAATTTGGATTAGGTGAAATC 58.367 33.333 7.92 0.00 43.22 2.17
427 428 7.490657 TCCTAACATCTGCTAGACCTTTTTA 57.509 36.000 0.00 0.00 0.00 1.52
503 504 0.393808 GGCAGGGAGGCGTTTCATTA 60.394 55.000 0.00 0.00 33.57 1.90
537 538 5.775686 CATCAGAAAATGAGCAGAAACCAA 58.224 37.500 0.00 0.00 42.53 3.67
538 539 5.186996 TCAGAAAATGAGCAGAAACCAAC 57.813 39.130 0.00 0.00 32.77 3.77
539 540 4.037923 TCAGAAAATGAGCAGAAACCAACC 59.962 41.667 0.00 0.00 32.77 3.77
540 541 3.960102 AGAAAATGAGCAGAAACCAACCA 59.040 39.130 0.00 0.00 0.00 3.67
564 565 2.287644 TGTCGTTCTGCAACTTGATGTG 59.712 45.455 0.00 0.00 0.00 3.21
565 566 1.264020 TCGTTCTGCAACTTGATGTGC 59.736 47.619 0.00 0.00 0.00 4.57
841 850 3.287867 AAGCATCGAACCATGGAAGAT 57.712 42.857 21.47 16.12 0.00 2.40
847 856 3.995199 TCGAACCATGGAAGATATGAGC 58.005 45.455 21.47 0.00 0.00 4.26
917 931 7.439381 TCGTTCCTATAAATACAGTGGGATTC 58.561 38.462 0.00 0.00 0.00 2.52
1055 1071 3.071602 AGTGTTGCTACCTTGTCAGTGAT 59.928 43.478 0.00 0.00 0.00 3.06
1056 1072 3.815401 GTGTTGCTACCTTGTCAGTGATT 59.185 43.478 0.00 0.00 0.00 2.57
1073 1089 7.484007 GTCAGTGATTAGTGATGCATTTTGAAG 59.516 37.037 0.00 0.00 38.46 3.02
1206 1244 4.388499 CAAGCGCCCCTACACCGT 62.388 66.667 2.29 0.00 0.00 4.83
1373 1412 0.676466 CAGCGCACTTGGTTATCCCA 60.676 55.000 11.47 0.00 43.27 4.37
1374 1413 0.676782 AGCGCACTTGGTTATCCCAC 60.677 55.000 11.47 0.00 45.19 4.61
1375 1414 0.958382 GCGCACTTGGTTATCCCACA 60.958 55.000 0.30 0.00 45.19 4.17
1387 1426 1.953559 ATCCCACAATGATCCGTTCG 58.046 50.000 0.00 0.00 0.00 3.95
1403 1442 2.411748 CGTTCGACCTGTACTGTACGTA 59.588 50.000 12.87 0.00 0.00 3.57
1404 1443 3.722082 CGTTCGACCTGTACTGTACGTAC 60.722 52.174 18.90 18.90 46.94 3.67
1415 1454 0.717784 TGTACGTACGTCTCGCTGAG 59.282 55.000 26.53 0.00 0.00 3.35
1423 1462 2.338500 ACGTCTCGCTGAGGAATTTTC 58.662 47.619 5.87 0.00 34.87 2.29
1506 1546 3.936203 TCCACGCACACCTCCACC 61.936 66.667 0.00 0.00 0.00 4.61
1980 2020 1.351017 GACCACCAGTTCATCCTTGGA 59.649 52.381 0.00 0.00 35.89 3.53
2149 2189 3.257561 CCATCGCGAGCCTCAACG 61.258 66.667 16.66 0.00 0.00 4.10
2157 2197 3.665675 GAGCCTCAACGCCACCGAT 62.666 63.158 0.00 0.00 38.29 4.18
2484 2524 1.139095 CTACAACCTCTCGCCGTCC 59.861 63.158 0.00 0.00 0.00 4.79
2562 2602 3.142838 GCCAGGCTCGGGTACGTA 61.143 66.667 3.29 0.00 41.85 3.57
2821 2861 9.971922 GCAAGTTGCCAATAAATCTTAATCTAT 57.028 29.630 17.36 0.00 37.42 1.98
2868 2908 7.432059 TGTCTCAATTGTTCATGCATGTTTTA 58.568 30.769 25.43 10.99 0.00 1.52
2869 2909 8.089597 TGTCTCAATTGTTCATGCATGTTTTAT 58.910 29.630 25.43 12.64 0.00 1.40
2870 2910 9.571810 GTCTCAATTGTTCATGCATGTTTTATA 57.428 29.630 25.43 2.81 0.00 0.98
2871 2911 9.571810 TCTCAATTGTTCATGCATGTTTTATAC 57.428 29.630 25.43 14.60 0.00 1.47
2955 2998 0.530431 GTTTGGTGTTGCTTGCAGGG 60.530 55.000 0.00 0.00 0.00 4.45
2961 3004 1.603455 GTTGCTTGCAGGGGCTACA 60.603 57.895 14.10 0.00 41.91 2.74
3003 3046 1.134848 CCTGGAAGTGAGAGCAGTAGC 60.135 57.143 0.00 0.00 42.56 3.58
3006 3049 1.134848 GGAAGTGAGAGCAGTAGCCAG 60.135 57.143 0.00 0.00 43.56 4.85
3009 3052 0.739112 GTGAGAGCAGTAGCCAGCAC 60.739 60.000 0.00 0.00 43.56 4.40
3011 3054 3.191539 GAGCAGTAGCCAGCACGC 61.192 66.667 0.00 0.00 43.56 5.34
3125 3173 2.421952 GGGCACATCAGCTCTGGAAATA 60.422 50.000 0.00 0.00 34.17 1.40
3131 3179 5.632764 CACATCAGCTCTGGAAATAGATACG 59.367 44.000 0.00 0.00 0.00 3.06
3132 3180 5.536538 ACATCAGCTCTGGAAATAGATACGA 59.463 40.000 0.00 0.00 0.00 3.43
3133 3181 6.040955 ACATCAGCTCTGGAAATAGATACGAA 59.959 38.462 0.00 0.00 0.00 3.85
3134 3182 6.656632 TCAGCTCTGGAAATAGATACGAAT 57.343 37.500 0.00 0.00 0.00 3.34
3135 3183 7.055667 TCAGCTCTGGAAATAGATACGAATT 57.944 36.000 0.00 0.00 0.00 2.17
3227 3281 5.826208 GGATATGTCAAATCGGGGTAAACTT 59.174 40.000 0.00 0.00 0.00 2.66
3414 3473 8.608317 GCAGAAAAATAAAAGTAAAGCCACAAA 58.392 29.630 0.00 0.00 0.00 2.83
3466 3525 9.603189 ACTACTTGCCTATCCTATTACATAAGT 57.397 33.333 0.00 0.00 0.00 2.24
3468 3527 8.263854 ACTTGCCTATCCTATTACATAAGTGT 57.736 34.615 0.00 0.00 42.39 3.55
3504 3563 6.891908 AGTTGAAAATAGTCCATGCTACCATT 59.108 34.615 0.00 0.00 0.00 3.16
3506 3565 7.716799 TGAAAATAGTCCATGCTACCATTTT 57.283 32.000 12.15 12.15 0.00 1.82
3511 3570 7.902920 ATAGTCCATGCTACCATTTTTCATT 57.097 32.000 0.00 0.00 0.00 2.57
3542 3601 0.839946 GTCACCATATGCTCCCTGGT 59.160 55.000 0.00 0.00 44.02 4.00
3545 3604 1.492176 CACCATATGCTCCCTGGTCTT 59.508 52.381 0.00 0.00 41.30 3.01
3583 3642 3.585862 GACCATATACGGATCAACGCAT 58.414 45.455 0.00 0.00 37.37 4.73
3603 3662 1.568504 TGGCTCGGAAGATAACCTGT 58.431 50.000 0.00 0.00 40.84 4.00
3640 3699 9.965824 ATATTTGTTGTTCTGTTAAAGACCAAG 57.034 29.630 0.00 0.00 37.92 3.61
3720 3780 2.495084 GCTGTTTCGGAATCTATCCCC 58.505 52.381 0.00 0.00 46.39 4.81
3761 3821 9.661563 AAATAACGTGTTGATAGTATTTGGAGA 57.338 29.630 0.00 0.00 0.00 3.71
3844 3904 5.474876 AGAAAGAGGTGTTTGATGGATTCAC 59.525 40.000 0.00 0.00 32.84 3.18
3885 3945 5.958380 ACATCTTGTAGATCCTGTCCAGTTA 59.042 40.000 0.00 0.00 31.32 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.806241 ACAACCACAACCGAACACAC 59.194 50.000 0.00 0.00 0.00 3.82
88 89 1.354368 CTCCCCAAAACCCTTAGAGCA 59.646 52.381 0.00 0.00 0.00 4.26
92 93 2.913617 AGACTCTCCCCAAAACCCTTAG 59.086 50.000 0.00 0.00 0.00 2.18
116 117 3.807631 TTTGAGCGCGCAGTCAGGT 62.808 57.895 35.10 10.81 0.00 4.00
119 120 1.152510 TAATTTTGAGCGCGCAGTCA 58.847 45.000 35.10 25.93 0.00 3.41
137 138 4.641989 GGACAGTTATCCAGGACGTAGTTA 59.358 45.833 0.00 0.00 39.08 2.24
138 139 3.446516 GGACAGTTATCCAGGACGTAGTT 59.553 47.826 0.00 0.00 39.08 2.24
218 219 2.927618 CGGTGCAACAGTGTCGTCG 61.928 63.158 0.98 0.00 39.98 5.12
312 313 4.114794 GCATGCAACAGACAAGAAAACTT 58.885 39.130 14.21 0.00 0.00 2.66
314 315 2.468777 CGCATGCAACAGACAAGAAAAC 59.531 45.455 19.57 0.00 0.00 2.43
379 380 7.201522 GGAAATTAGGCATTTTTCGATTTCACC 60.202 37.037 0.00 0.00 35.02 4.02
382 383 9.581099 TTAGGAAATTAGGCATTTTTCGATTTC 57.419 29.630 0.00 0.00 35.02 2.17
387 388 8.190784 AGATGTTAGGAAATTAGGCATTTTTCG 58.809 33.333 0.00 0.00 35.02 3.46
427 428 5.746990 AAGTCTGTAGCAGATTGTACCTT 57.253 39.130 1.99 0.00 42.73 3.50
477 478 2.440599 GCCTCCCTGCCTCCAAAA 59.559 61.111 0.00 0.00 0.00 2.44
503 504 6.349243 TCATTTTCTGATGCCAAATTCAGT 57.651 33.333 0.00 0.00 40.22 3.41
537 538 3.334583 AGTTGCAGAACGACATATGGT 57.665 42.857 7.80 0.00 37.15 3.55
538 539 3.684305 TCAAGTTGCAGAACGACATATGG 59.316 43.478 7.80 0.00 37.15 2.74
539 540 4.926860 TCAAGTTGCAGAACGACATATG 57.073 40.909 0.00 0.00 37.15 1.78
540 541 4.937620 ACATCAAGTTGCAGAACGACATAT 59.062 37.500 0.00 0.00 37.15 1.78
692 693 5.226396 CGCAAGGACAAAATTTTATCCACA 58.774 37.500 26.06 0.00 33.33 4.17
832 841 3.672808 GTCTGGGCTCATATCTTCCATG 58.327 50.000 0.00 0.00 0.00 3.66
835 844 1.606737 GCGTCTGGGCTCATATCTTCC 60.607 57.143 0.00 0.00 0.00 3.46
841 850 0.396556 TGGTAGCGTCTGGGCTCATA 60.397 55.000 0.00 0.00 43.54 2.15
847 856 1.815421 GTGCATGGTAGCGTCTGGG 60.815 63.158 0.00 0.00 37.31 4.45
932 948 4.047059 GCAAGTGCGTGCATGGCT 62.047 61.111 8.27 0.00 44.29 4.75
1055 1071 5.450592 TGCACTTCAAAATGCATCACTAA 57.549 34.783 0.00 0.00 46.63 2.24
1073 1089 1.265095 CCAACATCACACACTCTGCAC 59.735 52.381 0.00 0.00 0.00 4.57
1186 1224 2.436115 GTGTAGGGGCGCTTGGTC 60.436 66.667 10.13 0.00 0.00 4.02
1364 1403 3.208747 ACGGATCATTGTGGGATAACC 57.791 47.619 0.00 0.00 40.81 2.85
1373 1412 1.275291 ACAGGTCGAACGGATCATTGT 59.725 47.619 7.85 0.00 0.00 2.71
1374 1413 2.010145 ACAGGTCGAACGGATCATTG 57.990 50.000 7.85 0.00 0.00 2.82
1375 1414 2.758979 AGTACAGGTCGAACGGATCATT 59.241 45.455 7.85 0.00 0.00 2.57
1403 1442 2.338500 GAAAATTCCTCAGCGAGACGT 58.662 47.619 7.07 0.00 0.00 4.34
1404 1443 1.661112 GGAAAATTCCTCAGCGAGACG 59.339 52.381 4.91 0.00 44.11 4.18
1405 1444 2.010497 GGGAAAATTCCTCAGCGAGAC 58.990 52.381 11.75 0.00 46.72 3.36
1406 1445 1.405526 CGGGAAAATTCCTCAGCGAGA 60.406 52.381 11.75 0.00 46.72 4.04
1415 1454 0.243636 CACCTGCACGGGAAAATTCC 59.756 55.000 1.58 3.49 46.82 3.01
1423 1462 2.578163 ATCATCGTCACCTGCACGGG 62.578 60.000 7.06 0.00 37.85 5.28
1785 1825 2.317609 CCCGCACTTCTTGGTCACG 61.318 63.158 0.00 0.00 0.00 4.35
1863 1903 0.976641 TGATGTCGAACTGGAGCCTT 59.023 50.000 0.00 0.00 0.00 4.35
1864 1904 1.134580 CATGATGTCGAACTGGAGCCT 60.135 52.381 0.00 0.00 0.00 4.58
1869 1909 1.431488 CGCCCATGATGTCGAACTGG 61.431 60.000 0.00 0.00 0.00 4.00
2070 2110 1.654954 CGGTCCACTCGTCCTCGATT 61.655 60.000 0.00 0.00 45.21 3.34
2149 2189 1.522580 GCTTCTCCAGATCGGTGGC 60.523 63.158 0.00 0.00 37.53 5.01
2157 2197 1.618837 AGCTTACGTTGCTTCTCCAGA 59.381 47.619 9.50 0.00 37.52 3.86
2445 2485 3.854669 AGCATCGCCTCCGGGAAG 61.855 66.667 0.00 0.00 34.17 3.46
2484 2524 2.372690 CGACGCGTCCCAGTTGAAG 61.373 63.158 31.84 11.88 0.00 3.02
2562 2602 1.028330 CCAGCGTGATGAACTGCCAT 61.028 55.000 0.00 0.00 0.00 4.40
2821 2861 9.010029 AGACAAAAACTCTGAAAAGTTAGTCAA 57.990 29.630 14.05 0.00 38.52 3.18
2923 2966 8.956533 AGCAACACCAAACATTTAGTTAAAAT 57.043 26.923 0.00 0.00 40.26 1.82
2955 2998 2.615869 CAGAACTGCTCTTCTGTAGCC 58.384 52.381 13.09 0.00 41.56 3.93
2961 3004 3.056179 GCTTAGTCCAGAACTGCTCTTCT 60.056 47.826 0.00 0.00 39.11 2.85
3003 3046 2.974489 CTTGGCAAGAGCGTGCTGG 61.974 63.158 22.64 0.00 44.31 4.85
3006 3049 2.558313 GACTTGGCAAGAGCGTGC 59.442 61.111 32.50 10.86 43.41 5.34
3009 3052 2.037136 CCTGGACTTGGCAAGAGCG 61.037 63.158 32.50 16.53 43.41 5.03
3011 3054 1.004044 ACATCCTGGACTTGGCAAGAG 59.996 52.381 32.50 19.11 0.00 2.85
3073 3121 8.178313 GCCGCTTTTATTCTATCCAATTATCTC 58.822 37.037 0.00 0.00 0.00 2.75
3125 3173 9.155975 GCCAATTATAGTGATCAATTCGTATCT 57.844 33.333 0.00 0.00 0.00 1.98
3131 3179 8.114331 TCCATGCCAATTATAGTGATCAATTC 57.886 34.615 0.00 0.00 0.00 2.17
3132 3180 8.481492 TTCCATGCCAATTATAGTGATCAATT 57.519 30.769 0.00 0.00 0.00 2.32
3133 3181 8.660295 ATTCCATGCCAATTATAGTGATCAAT 57.340 30.769 0.00 0.00 0.00 2.57
3134 3182 8.361889 CAATTCCATGCCAATTATAGTGATCAA 58.638 33.333 0.00 0.00 0.00 2.57
3135 3183 7.524202 GCAATTCCATGCCAATTATAGTGATCA 60.524 37.037 0.00 0.00 40.49 2.92
3227 3281 4.862574 CGACCTGAAAGACATCGTCAATAA 59.137 41.667 0.00 0.00 34.07 1.40
3261 3315 4.555511 CGGGAAGCTCTCACTTTTCAAAAG 60.556 45.833 8.42 8.42 0.00 2.27
3263 3317 2.878406 CGGGAAGCTCTCACTTTTCAAA 59.122 45.455 0.00 0.00 0.00 2.69
3272 3326 3.077556 GAGGCCGGGAAGCTCTCA 61.078 66.667 2.18 0.00 33.11 3.27
3274 3328 3.080121 CAGAGGCCGGGAAGCTCT 61.080 66.667 2.18 0.00 0.00 4.09
3280 3334 0.980754 TTCTAATGCAGAGGCCGGGA 60.981 55.000 2.18 0.00 40.13 5.14
3444 3503 8.367911 TGACACTTATGTAATAGGATAGGCAAG 58.632 37.037 0.00 0.00 39.95 4.01
3465 3524 4.647424 TTTCAACTGGTTTGGATGACAC 57.353 40.909 0.00 0.00 35.69 3.67
3466 3525 5.867903 ATTTTCAACTGGTTTGGATGACA 57.132 34.783 0.00 0.00 35.69 3.58
3468 3527 6.208599 GGACTATTTTCAACTGGTTTGGATGA 59.791 38.462 0.00 0.00 35.69 2.92
3542 3601 1.199327 CGCTACTCACTCCGACAAAGA 59.801 52.381 0.00 0.00 0.00 2.52
3545 3604 0.520404 GTCGCTACTCACTCCGACAA 59.480 55.000 7.09 0.00 46.57 3.18
3583 3642 1.906574 ACAGGTTATCTTCCGAGCCAA 59.093 47.619 0.00 0.00 0.00 4.52
3699 3759 2.495084 GGGATAGATTCCGAAACAGCC 58.505 52.381 0.00 0.00 46.52 4.85
3720 3780 2.107950 TATTTGGGACGTGGCTTGAG 57.892 50.000 0.00 0.00 0.00 3.02
3776 3836 0.250793 ATGGCGGACGGTTCACATAA 59.749 50.000 0.00 0.00 0.00 1.90
3844 3904 4.261801 AGATGTAGTTTTTGTGATCGGGG 58.738 43.478 0.00 0.00 0.00 5.73
3885 3945 6.628919 ACTAAGAATAACTTGGCAAAACGT 57.371 33.333 0.00 0.00 40.08 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.