>input_sequence_38992
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-------------------------------------------------------ATGGCGTCGCCGCTCTCCGCCCCTT
CTTTGGTTAGTGTTGCTACCTTGTCAGTGATTAGTGATGCATTTTGAAGTGCAG---AGTGTGTGATGTTGGATTTGT--
-----------------TACGTGCAGATCATGGAGGAGGAAGGGCGGTTCGAGGCGGAGGTGGCCGAGGTGGGGGCGTGG
TGGAACACGGAGAGGTTCCGGCTGACCAAGCGCCCCTACACCGTCCGCGACGTGGTCCTCCTCCGCGGCACGCTCCGCCA
GAGCTACGCCTCCGGCGAAATGGCCAAGAAGCTCTGGCGCACGCTCAAGGCCCACCAGGCCGCCGGCACGGCCTCGCGCA
CGTTCGGCGCGCTCGACCCCGTGCAGGCACGCAGCGCAC-TTGGTTATCCCACAATGATCCGTTCGACCTGTACTGTACG
TACGTCTCGCTGAGGAATTTTCC-CGTGCAGGTGACGATGATGGCCAAGCATCTGGACACCATCTACGTGTCCGGGTGGC
AGTGCTCGTCCACGCACACCTCCACCAACGAGCCGGGGCCGGACCTCGCGGACTACCCCTACGACACCGTGCCCAACAAG
GTCGAGCACCTCTTCTTCGCCCAGCAGTACCACGACCGGAAGCAGCAGGAGGCGCGCATGTCTCTGCCCCGCGCCGAGCG
CACCCACGCGCCTTTCGTCGACTTCCTCAAGCCCATCATCGCCGACGGCGACACAGGCTTCGGCGGCGCCACTGCCACTG
TCAAGCTCTGCAAGCTCTTCGTCGAGCGCGGGGCAGCCGGGGTCCACCTGGAGGACCAGTCGTCCGTGACCAAGAAGTGC
GGGCACATGGCGGGGAAGGTGCTCGTCGCCGTCTCGGAGCACGTCAACCGCCTCGTCGCCGCAAGGCTCCAGTTCGACAT
CATGGGCGTCGAGACCGTCCTCGTTGCCCGCACCGACGCTGTGGCCGCGACGCTGATCCAGACCAACATCGACGCGCGCG
ACCACCAGTTCATCCTTGGAGCAACGAACCCGCGCCTCAAAAACCGGAGCCTCACGGCCATGCTCTCCGACGCCATGTCG
GCCGGCAAGAACGGCAGGGAGCTGCAGGCAATCGAGGACGAGTGGACCGCCACGGCGCAGCTCAAAACCTTCTCCGAGTG
CGTCAAGGACGCCATCGCGAGCCTCAACGCCACCGATCTGGAGAAGCAACGTAAGCTCCAGGAGTGGAGCAGCGCCACCA
GCTACGACAAGTGCGTGTCCCACGAGCAAGCGCGCGACATCGCCGCGAGCCTGGGAGTCGGGTCCGTGTTCTGGGACTGG
GATCTGCCACGGACCAGGGAAGGGTTCTACCGCTTCCAGGGCTCCGTCGCCTCCGCCGTCGTCCGCGGGCGCGCCTTCGC
GCCGCACGCCGACGTGCTCTGGATGGAGACGTCGAGCCCAAACATCGCCGAGTGCACGGCCTTCGCCGAGGGCGTGAGGG
CGGCCTTCCCGGAGGCGATGCTGGCCTACAACCTCTCGCCGTCCTTCAACTGGGACGCGTCGGGCATGACGGACGCCGAC
ATGGCGGCGTTCATCCCGCACGTCGCCAGGCTCGGGTACGTATGGCAGTTCATCACGCTGGCCGGGTTCCACGCCGACGC
GCTCGTCACCGACACGTTCGCGCGGGACTTCGCCCGGCGCGGCATGCTGGCGTACGTGGAGAGGATCCAGCGGGAGGAGA
GGAGGAATGGGGTGGAGACTCTGGAGCACCAGAAGTGGTCGGGTGCCAACTTCTATGACAGGGTGCTCAAGACCGTGCAG
GGCGGCATGTCCTCAACCGCAGCCATGGGAAAAGGCAAGTTGCCAATAAATCTTAATCTATTGACTAACTTTTCAGAGTT
TTTGTCTCAATTGTTCATGCATGTTTTATACTATTTCAA--TATCTTTAAAGAAATAGATATATTACTTTTTTG-TTCTT
CTAACATTTTAACTAAATGTTTGGTGTTGCTTGCAGGGGCTACAGAAGAGCAGTTCTGGACTAAGCCTGGAAGTGAGAGC
AGTAGCCAGCACGCTCTTGCCAAGTCCAGGATGTGA--------------------------------------------
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>chr2A_1_TraesCS2A01G219100
GTGTGTTCGGTTGTGGTTGTATCATGGTTTGTCTTTATTTATAAAGCGGGGCAAGAAGCCTTTTTCGATAGAACCTGCAC
CGTGCAAGTGCTCTAAGGGTTTTGGGGAGAGTCTCGACCTGACTGCGCGCTCAAAATTAACTACGTCCTGGATAACTGTC
CGTCTGCTTCTACCACTTCCTCTGCGGCAGACCAGTACCTTGTCTTCTCCATCGTGGTCGACGACACTGTTGCACCGGAG
TTTCCGATGAACTCTTATGTTATGAACCTTCCCATGTTGACATGTGACTTTGGTCCATATACTTACATACTAAAGTTTTC
TTGTCTGTTGCATGCGATTTGCCATGTTAGTAAACTTCTGATGATGCTAATTTGGATTAGGTGAAATCGAAAAATGCCTA
ATTTCCTAACATCTGCTAGACCTTTTTAAGGTACAATCTGCTACAGACTTTCTATGGGTAAATGTGTAAACAGTAATTTT
TGGAGGCAGGGAGGCGTTTCATTACTGAATTTGGCATCAGAAAATGAGCAGAAACCAACCATATGTCGTTCTGCAACTTG
ATGTGCTGACGTCAGTTACCGAAGCCATAGCATGGATCACAGTTCAGTTTTGAGACGATAGGAGTAGCACGCACGCAACC
GATCTCAGCTTATGTGCAACCAGTTCTAACCGCTGGAACTGTCCAAACTACGTGTGGATAAAATTTTGTCCTTGCGCGTA
ACCGATCGAAATCCTGGGCACCA--------CCGTCGACGTAGCGGCCATAACCACTCACGGTTGCGACCCTCGCCTGCC
CTGCCCAGCTGCATGCGAAATCCCACGATAAGCATCGAACCATGGAAGATATGAGCCCAGACGCTACCATGCACCATGCA
CGCACGCATGAAGAGTCATC-----TCGTTCCTATAAATACAGTGGGATTCCGAGGCGAAGC--AGCAGCCATGCACGCA
CTTGCACTTCTTTGATCCTCCTATATCCTACAGGTGCATAGCTCTCCCAGAGGCCATGGCGTCGCCGCTCTCCGCCCCTT
CTTTGGTTAGTGTTGCTACCTTGTCAGTGATTAGTGATGCATTTTGAAGTGCAG---AGTGTGTGATGTTGGATTTGT--
-----------------TACGTGCAGATCATGGAGGAGGAAGGGCGGTTCGAGGCGGAGGTGGCCGAGGTGGGGGCGTGG
TGGAACACGGAGAGGTTCCGGCTGACCAAGCGCCCCTACACCGTCCGCGACGTGGTCCTCCTCCGCGGCACGCTCCGCCA
GAGCTACGCCTCCGGCGAAATGGCCAAGAAGCTCTGGCGCACGCTCAAGGCCCACCAGGCCGCCGGCACGGCCTCGCGCA
CGTTCGGCGCGCTCGACCCCGTGCAGGCACGCAGCGCAC-TTGGTTATCCCACAATGATCCGTTCGACCTGTACTGTACG
TACGTCTCGCTGAGGAATTTTCC-CGTGCAGGTGACGATGATGGCCAAGCATCTGGACACCATCTACGTGTCCGGGTGGC
AGTGCTCGTCCACGCACACCTCCACCAACGAGCCGGGGCCGGACCTCGCGGACTACCCCTACGACACCGTGCCCAACAAG
GTCGAGCACCTCTTCTTCGCCCAGCAGTACCACGACCGGAAGCAGCAGGAGGCGCGCATGTCTCTGCCCCGCGCCGAGCG
CACCCACGCGCCTTTCGTCGACTTCCTCAAGCCCATCATCGCCGACGGCGACACAGGCTTCGGCGGCGCCACTGCCACTG
TCAAGCTCTGCAAGCTCTTCGTCGAGCGCGGGGCAGCCGGGGTCCACCTGGAGGACCAGTCGTCCGTGACCAAGAAGTGC
GGGCACATGGCGGGGAAGGTGCTCGTCGCCGTCTCGGAGCACGTCAACCGCCTCGTCGCCGCAAGGCTCCAGTTCGACAT
CATGGGCGTCGAGACCGTCCTCGTTGCCCGCACCGACGCTGTGGCCGCGACGCTGATCCAGACCAACATCGACGCGCGCG
ACCACCAGTTCATCCTTGGAGCAACGAACCCGCGCCTCAAAAACCGGAGCCTCACGGCCATGCTCTCCGACGCCATGTCG
GCCGGCAAGAACGGCAGGGAGCTGCAGGCAATCGAGGACGAGTGGACCGCCACGGCGCAGCTCAAAACCTTCTCCGAGTG
CGTCAAGGACGCCATCGCGAGCCTCAACGCCACCGATCTGGAGAAGCAACGTAAGCTCCAGGAGTGGAGCAGCGCCACCA
GCTACGACAAGTGCGTGTCCCACGAGCAAGCGCGCGACATCGCCGCGAGCCTGGGAGTCGGGTCCGTGTTCTGGGACTGG
GATCTGCCACGGACCAGGGAAGGGTTCTACCGCTTCCAGGGCTCCGTCGCCTCCGCCGTCGTCCGCGGGCGCGCCTTCGC
GCCGCACGCCGACGTGCTCTGGATGGAGACGTCGAGCCCAAACATCGCCGAGTGCACGGCCTTCGCCGAGGGCGTGAGGG
CGGCCTTCCCGGAGGCGATGCTGGCCTACAACCTCTCGCCGTCCTTCAACTGGGACGCGTCGGGCATGACGGACGCCGAC
ATGGCGGCGTTCATCCCGCACGTCGCCAGGCTCGGGTACGTATGGCAGTTCATCACGCTGGCCGGGTTCCACGCCGACGC
GCTCGTCACCGACACGTTCGCGCGGGACTTCGCCCGGCGCGGCATGCTGGCGTACGTGGAGAGGATCCAGCGGGAGGAGA
GGAGGAATGGGGTGGAGACTCTGGAGCACCAGAAGTGGTCGGGTGCCAACTTCTATGACAGGGTGCTCAAGACCGTGCAG
GGCGGCATGTCCTCAACCGCAGCCATGGGAAAAGGCAAGTTGCCAATAAATCTTAATCTATTGACTAACTTTTCAGAGTT
TTTGTCTCAATTGTTCATGCATGTTTTATACTATTTCAA--TATCTTTAAAGAAATAGATATATTACTTTTTTG-TTCTT
CTAACATTTTAACTAAATGTTTGGTGTTGCTTGCAGGGGCTACAGAAGAGCAGTTCTGGACTAAGCCTGGAAGTGAGAGC
AGTAGCCAGCACGCTCTTGCCAAGTCCAGGATGTGATGAAGGTTGAGAAGGAATAATGA-----TTAAGAAGAAAGCTCT
GAGATAATTGGATAGAATAAAAGCGGCACGAGGGCACATCAGCTCTGGAAATAGATACGAATT-----GATCACTATAAT
TGGCATGGAATTGCCTAGCTATATATACTCCTACGAATTATGTCAGGCTCCAATTGGAT-ATGTCAAATCGGGGTAAACT
TTATTGACGATGTCTTTCAGGTCGTCATTTTTTTCTTTTGAAAAGTGAGAGCTTCCCGGCCTCTGCATTAGAACGATGCA
TACGGCCATA-TTATTAATAAGCAAATAGGTTCAACTCAAATCTTGATGTCTCAAACAAAAGAACAAA-AATGCTCACAA
AGAGCAGAAAAA-T--AAAAGTAAAGCCACAAACGGCTGGCGTAAAAAAGATAGAAAAACTACTTGCCTATCCTATTACA
TAAGTGTCATCCAAACCAGTTGAAAATAGTCCATGCTACCATTTTTCATTGGATAGATCCAGTCACCATATGCTCCCTGG
TCTTTGTCGGAGTGAGTAGCGACCATATACGGATCAACGCATTGGCTCGGAAGATAACCTGTAAAAAAATAAATATTTGT
TGTTCTGTTAAAGACCAAGTCATTTCTGCA-TTTCAGACTGCCCATAATAAAGCACATACTCCTACACGAATGTGTCTGG
CTGTTTCGGAATCTATCCCCTCAAGCCACGTCCCAAATAACGTGTTGATAGTATTTGGAGAAGTAATATTAAAGGTTATG
TGAACCGTCCGCCATAATTTTTTTGCCAACGGACAGTCAAGAAAGAGGTGTTTGATGGATTCACCCCGATCACAAAAACT
ACATCTTGTAGATCCTGTCCAGTTACGTTTTGCCAAGTTATTCTTAGTTAAAATGACTTGTTTGTGTACAAACCATATAA
ACACTTTAACTTTCAAAGGTACTTTGACTTT-CCAAACATGTTTCGAACTAGGAATAGAGCTAGAATTGATAACATCCAG
ATACATGGATTTAA
>chr2D_3
--GTGTTCGGTTATGGTTGTATCATGGTTTGTCTTTATTTATAAAGC-GGGTAAGAAGCCTTTTTCGATAGAACCTGCAC
CATGCAATGGCTATAAGAGTTTTGGGGAGAGTCTCGGCGCGACTGCGCGCTCAAAATCGACTACGTCCTGGATAACTGTC
CGTCTGCTTCTACCACTTCCTCCGCGGTAGACCAGTACCTTGTTTTCTCCATCGTGGTTGACGACAGTGTTGCACTGGAG
TTTCTGATGAACTCTTATGTTATGAACCTCCCCATGTTGACATGTGACTTTGGTCCATATACTTACATACTAGATTTTTC
TTGTCTGTTACATGCGACTTGCCATGTTAGTAAACTTCTGATGATGTTAATTTGGATTAAGTTAAATTGAAAAATGCCTA
ATTTCCTAACATCTGCTAGACCTTTTTTAGGTACAATCTGCTACAGACTTTCTACGGGTAAACGTGTAAACAGTAATATT
TGGAGGCAGGGAGGCGTTTCATTTCTGAATTTGGCATCAGAAAATGAGCAGAAACCA----TATGTCGTTCTGCAACTTG
ATGTCTCGACGTTAGTTACCGAAGCCATAGCATGGATCACAGTTCAGTTTTCAGACGATGGGAGTGGCACGCACGCAACC
GATCTCAGCTTATGTGCAACCAGTTCTAACCGCTGGAACTGTCCAAACTACGCGTGGATAAAATTTTGTCCTTGCGCGTA
ACCGATCGAAGTCCTGGACACCA--------CCGTCGACGTAGCGGCCATAACCACTCACGGTTGCGACCCTCGCCTGCC
CG-----GCTGCATGCGAAATCCCACGATAAGCATCGAACGATCGGAGAGATCAGGCCACACGCTACCATGCACCATGCA
CGCACGCATGAAGAGTCATC-----TCGTTCCTATAAATACAGTGGGATTTCGAGGCGAAGC--AGC---CATGCACGCA
CTTGCACTTCTTTGATCCTCCTATATCCTACAGGTGCATAGCTCTCCCAGAGGCCATGGCGTCGCCGCTCTCCGTCCCTT
CTTTGGTTAGTGTTGCTACCTTGTCAGTGACCAGTGATGCATTTTGAACTGCAG---AGTGTGTGATGTTGGATTTGT--
-----------------TACGTGCAGATCATGGAGGAGGAAGGGCGGTTCGAGGCGGAGGTGGCCGAGGTCGGGGCGTGG
TGGAACACGGAGAGGTTCCGGCTCACCAAGCGCCCCTACACCGCCCGCGACGTCGTCCTCCTCCGCGGCACGCTCCGCCA
GAGCTACGCCTCCGGCGAAATGGCCAAGAAGCTCTGGCGCACGCTCAAGGCCCACCAGGCCGCCGGCACGGCCTCGCGCA
CGTTCGGCGCGCTCGACCCCGTGCAGGCACGCAGCGCAA-TTCGCTATCCC---CTCATCCGTTCCACCTGTACTGTACG
T----CTCGCTCAAGAATTTTTC-CATGCAGGTGACGATGATGGCAAAGCATCTGGACACCATCTACGTGTCCGGGTGGC
AGTGCTCGTCCACGCACACCTCGACGAACGAGCCCGGGCCGGACCTCGCGGACTACCCCTACGACACCGTGCCCAACAAG
GTGGAGCACCTCTTCTTCGCCCAGCAGTACCACGACCGGAAGCAGCAGGAGGCGCGCATGTCTCTGCCCCGCGCGGAGCG
CGCCCACGCGCCTTTCGTCGACTTCCTCAAGCCCATCATCGCCGACGGCGACACTGGCTTCGGCGGCGCCACTGCCACTG
TCAAGCTCTGCAAGCTCTTCGTCGAGCGCGGGGCAGCCGGGGTCCACCTGGAGGACCAGTCGTCGGTGACCAAGAAGTGC
GGGCACATGGCGGGGAAGGTGCTCGTCGCCGTCTCGGAGCACGTCAACCGCCTCGTCGCCGCTCGGTTGCAGTTCGACAT
CATGGGCGTTGAGACCGTCCTCGTTGCCCGCACCGACGCCGTCGCCGCGACGCTGATCCAGACCAACATCGACGCGCGCG
ACCACCAGTTCATCCTCGGCGCAACGAACCCGCGCCTCAAAAACCGGAGCCTCACGGCCATGCTCTCCGACGCCATGTCG
GCCGGCAAGAACGGCAGGGAGCTGCAGGCCATCGAGGACGAGTGGACCGCCACGGCGCAGCTCAAAACCTTCTCCGAGTG
CGTCAAGGACGCCATCGCGAGCCTCAACACCACCGACCTGGAGAAGCAACGTAAGCTCCAGGAGTGGAGCAACGCCACCA
GCTACGACAAGTGCGTGTCCCACGAGCAAGCGCGCGACATCGCCGCAGGCCTGGGGGTCGGGTCCGTGTTCTGGGACTGG
GATCTGCCACGGACCAGGGAAGGGTTCTACCGCTTCCAGGGCTCCGTCGCCTCCGCCGTGGTCCGCGGGCGCGCCTTCGC
GCCGCACGCCGACGTGCTCTGGATGGAGACGTCGAGCCCAAACATCGCCGAGTGCACGGCCTTCGCCGAGGGCGTGAGGG
CGGCTTTCCCGGAGGCGATGCTGGCCTACAACCTCTCGCCGTCGTTCAACTGGGACGCGTCGGGCATGACGGACGCCGAC
ATGGCGGCGTTCATCCCGCACGTCGCCAGGCTCGGGTACGTGTGGCAGTTCATCACGCTGGCCGGGTTCCACGCCGACGC
GCTGGTCACCGACACGTTCGCGCGGGACTTCGCCCGGCGCGGCATGCTGGCGTACGTGGAGAGGATCCAGCGGGAGGAGA
GGAGGAATGGGGTGGAGACTCTGGAGCACCAGAAGTGGTCGGGTGCCAACTTCTATGATAGGGTGCTCAAGACTGTGCAG
GGCGGCATGTCCTCAACCGCAGCCATGGGAAAAGGCAAGTTGTCAATAAATCTTAATCTAGTGACTAACTTTCCAGAGTT
TTTGTCTCAATTGTTCATGCATGTTTTG---TATTTTAT--CTTTTTGAAATAAATAAATTTATATTTCTTCATATTCTT
CTAAATTTTTAACTAAATGTTTGGTGTTGCTTGCAGGAGCTACTGAAGAGCAGTTCTGGACTAAACCTGGAAGTGAGAGC
AGTAGTCAACATGTTCTTGCCAAGTCCAGGATGTGATGAAGGTTGAGAAGGAATAATGA-----TTAAGAAGAAAGCTCT
AAGATAATTGGATAGAATAAAAGCGGCTCGAGGGCACATCAGCTCTGGAAATGGATACTTTACGAATCGATCACTATAAT
TGGCATGGAATTGCCTAGCTATATATACTCCTACGAATTATGTTAGGCTCCAATTGGAT-ATGTCAAATCGGGGTAAATT
GTATTGCCGATGTCTTTCAGGTCGTCA-----------------------------------------------------
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>chr2B_3
--GTGTTCGGTTGTGGTCGTATCATGGTTTGTATTTATTTATAAAGCGGGGCAAGAAGTCTTTTTCGATAGAACCTGCAC
CGTGCAAGGGCTATAAGGGTTTTGGGGAGAGTCTCGGCCCGATTGCGCGCTCAAAATCGACTACGTCCTGGATAACTGTC
CATCTGCTTCTACCACTTCCTCTACGGCAAACCAGTACCTTGTCTTCTCCATCGTGGTTGACGACACTATTGCACCGGAG
TTTCCGATGAACTCTCATGTTATGAACCTCTCCATGTTGACATGTGACTTTGGTCCATATACTTACATACTAGATTTTTC
TTGACTGTTGCATGCGATTTGCGATGTTAGTAAACTTCTGATGATGCTAATTTGGATTAAGTTAAATTGAAAAATGCCTA
ATTTCCTAACATCGGCTAGACCTTTTTTAGGTACAATCTGCTACAGACTTTCTATGGGTAAATGTGTAAAGAGTAATATT
TGGAGGCAGGGAGGCGTTTCATTTCTGAATTTGGCATCAGAAAATGAGCATAAACTA----TAAGTTGTTCTGCAAGTTG
ATGTCTTGATGTCAGTCACCGAAGCCATAGCATGGATCACAGTTCAGTTATGAGATGATAGGAGTAGCACGCACGCAACC
GATCTCAGCTTATGTGCAACCAGTTCTAACCGCTGGAACTGTCCAAACTACGCGTGGATATATTTTTGTCCTCGTGCGTA
ACCGATCGAAATCCTGGGCACCACCGTGGCACCGTCGACGTAGCGGCCATAACCACTCACGGTTGCGACCCTCGCCTGCC
ATGCCCAGCTGCATGCGAAATCCCACGATAAGCATTGAACGATCGAAGAGATGAGTCCAGACGCTACCATGCACCATGCA
CGCACGCATGAAGAGTCATCTCATCTCATTCGTATAAATACAGTGGGGTTTCGAGGCGAAGCAGAGC---CATGCACGCA
CTTGCACTCCTTTGATCCTCCTAT--CCTACAGGTGCCAGAGCTCAAA----GCCATGGCGTCGCCGTTTTCCGCCCCTT
CTTTGGTTAGTGTTGCTACCTTGTCAA-------TGATGCATTTTGAACTGCAGGAGAGTGTCTGATCGTGGCTTTCTTA
TGTGATGGACCTGTACGTACGTGCAGATCATGGAGGAGGAAGGGCGGTTCGAGGCGGAGGTGGCCGAGGTGGGGGCGTGG
TGGAACACGGAGAGGTTCCGGCTCACCAAGCGCCCCTACACCGCCCGCGACGTCGTCCTCCTCCGCGGCACGCTCCGCCA
GAGCTACGCCTCCGGCGAAATGGCCAAGAAGCTCTGGCGCACGCTCAAGGCCCACCAGGCCGGCGGCACGGCCTCGCGCA
CGTTCGGCGCGCTCGACCCCGTGCAGGTACGCAGCGCACTTTCGTTATCCC---ATGATTCGTTCTACCTGTACTGTACG
T----CTTGCTGAATTTGTTTGTTCGTGCAGGTGACGATGATGGCCAAGCATCTGGACACCATCTACGTGTCCGGGTGGC
AGTGCTCGTCCACGCACACCTCCACGAACGAGCCGGGGCCGGACCTCGCGGACTACCCCTACGACACCGTGCCCAACAAG
GTCGAGCACCTCTTCTTCGCGCAGCAGTACCACGACCGGAAGCAGCAGGAGGCGCGCATGTCTCTGCCCCGCGCGGAGCG
CGCCCACGCGCCTTTCGTCGACTTCCTCAAGCCCATCATCGCCGACGGCGACACTGGCTTCGGCGGCGCCACTGCCACTG
TCAAGCTCTGCAAGCTCTTCGTCGAGCGCGGGGCAGCCGGGGTCCACCTGGAGGACCAGTCGTCGGTGACCAAGAAGTGC
GGCCACATGGCGGGGAAGGTGCTCGTCGCCGTCTCCGAGCACGTCAACCGCCTCGTCGCCGCTCGGCTGCAGTTCGACAT
CATGGGCGTCGAGACCGTCCTCGTTGCCCGCACCGACGCCGTCGCCGCGACGCTGATCCAGACCAACATCGACGCGCGTG
ACCACCAGTTCATCCTTGGCGCAACGAACCCGCGCCTCAAAAACCGGAGCCTCACGGCCATGCTCTCCGACGCCATGTCG
GCCGGCAAGAACGGCAGGGAGCTGCAGGCCATCGAGGACGAGTGGACCGCCACGGCGCAGCTCAAAACCTTCTCCGAGTG
CGTCAAGGACGCCATCGCGAGGCTCAACAGCACCGACCTGGACAAGCAACGTAAGCTCCAGGAGTGGAGCAAGGCCACCA
GCTACGACAAGTGCGTGTCCCACGAGCAAGCGCGCGACATCGCCGCGAGCCTGGGAGTCGGGTCCGTGTTCTGGGACTGG
GATCTGCCACGGACCAGGGAAGGGTTCTACCGCTTCCAGGGCTCCGTGGCGTCGGCCGTGGTCCGCGGGCGCGCCTTCGC
GCCGCACGCCGACGTGCTGTGGATGGAGACGTCGAGCCCAAACATCGCCGAGTGCACGGCCTTCGCCGAGGGCGTGAGGG
CGGCTTTCCCGGAGGCGATGCTGGCCTACAACCTCTCGCCATCGTTCAACTGGGACGCGTCAGGCATGACGGACGCCGAC
ATGGCGGCGTTCATCCCGCACGTCGCCAAGCTCGGGTACGTGTGGCAGTTCATCACGCTGGCCGGGTTCCACGCCGACGC
GCTCGTCACCGACACGTTCGCGCGGGACTTCGCCCGGCGCGGCATGCTGGCCTATGTGGAGAGGATCCAGCGGGAGGAGA
GGAGGAATGGGGTGGAGACTCTGGAGCACCAGAAGTGGTCGGGTGCCAACTTCTATGACAGGGTGCTCAAGACCGTGCAG
GGCGGCATGTCCTCAACCGCAGCCATGGGAAAAGGCAAGTTGCCATTAAATCTTAATCTAGTGACTGACTTTTCAGAGTT
TTTATCTCAATTGTTCATGCATGTTTTG---TATTTTTATCTTTTTTGAAATAAATAAATGAATATTTCTTTGTATTCTT
CTAAATCTTTAACTAAATGTTTGGTGTTGCTTGCAGGAGCTACTGAAGAGCAGTTCTGGACTAAGCCTGGAAGCGAGGGC
AGTAGTCAACATGTTCTTGCCAAGTCCAGGATGTGATGAAGGTTGAGAAGGAATAATGATTTGGTTAAGAAGAAAGCTCT
AAGATAATTGGATAAAAGAAAAGCGGCATGAGGTCACATCAGCTCTGGAAA-----------------------TATAAT
TGGCATGGAATTGCCTAGCTATATATACTCCTACGAATTATGTTAGGCTCCAATTGGATGATGTCAAATCGGGGTAAACT
GTATTGACGATGTCTTTCAGGTCGTCA-----------------------------------------------------
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>chr3D_3254
ATTTGTT-------------------------------------------------------------------------
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-------------------------------TTTTT-TCAAAAAGGGGGAGCTCCCCGGCCTCTGCATCAGAACGATGCG
TACGGGCAACTTAATTAATAAGCAAATAGGTTCAACACAAGTCTTGATGTCTCAAACAAAAGAACACAAAATGCTCACAA
AGAGCAG-AAAA-T--AAAAGTAAAGCCACAACCGGCTGGCATAAGCAAGATAGGAAAACTAATTGCCTATCCTATTACA
TAACCGCCATCCAAACCGGTTGAAAATAGCCCGAGCTACCATCTCCCATCGGATAGATCCAGTAACCATACGCTCCCTGG
CCTCCGTCAGAGTGAGTAGCGACCATATACGGATCAACGCAGTGGCTCGGAAGATAACCTGCAAAAAA-TGAATATTTGT
TGTTCTGTTAAAGACCAAATCATTTCTGCAGTCACAGACTGCCCATAATAAAGCACATACTCCTACACGAATGTGTCTCG
CCGTTTCGGAATCTATCCCGTCAAGCCACGTCCCAAATAACGTGTTGATAGTATTCGGAGGAGTAATGTTAAAGGCTATG
TGAACCGTCCGTCATAATTTTTTGGGCAACGGCCAGTCAAGAAAGAGGTGTTTGATGGATTCATCCCGATCACAAAAACT
ACATCTAGTAGATCCTGTCCAGTTGCGTTTTGCCAAGTTGTCCTTAGTTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAACTTTCAAAGGTACTTTGACCTT-CCAAACATGTTTCAAACTAGGAATAGAGCTAGAATTGATAACATCCAG
ATACATGGATTTAA
>chr3B_3254
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--------------------------ATTTTTTTTT-TCAAAAAGGGGGAGCTCCCCGGCCTATGCATCAGAACGATGCA
TACGGCCATACTTATTAATAAGCAAATAAGTTCAACACAAGTCTCGATGTCTCAAACAAAAGAACAAAAATTGCTCACAA
AGAGCAG-AAAAAT--GAAAGTAAAGTCACAATCGGCTGGTATAAGAAATATAGGGAAACTAATTGCCTATCCTATTACA
TAACCGCCATCCAAACAGGTTGAAAATAGTCCGTGCTACCATCTCCCATCGGACAGATCCAGTCGCCATACGCTCTCTGG
CCTCCGTCGGAGTGAGTAGCGACCACATACGGATCAACGCAGTGGCTCGAAAGATAACCTGCAAAAAA-TGAATATTTGT
TGTTCTATAAAAGACCAAATCATTTCTGCGGTTCCAGACTGCCCATAATAAAGCACATACTCCTACACGAATGTGTCCCG
CTGTTTCGGAATCTATCCTGTCAAGCCACATCCCAATTAAGATGCTGATATTATTCGGATGAGTAATATTAAAGGCTATG
TGAACCGTCCGCCATAATTTTTTTGCTAACGGGCAGTCAAGGAAGAGGTGTTTGATGGATTCATCCCGATCACAAAAACT
ACATTTTGTAGATCCTGTCCAGTTGCGTTTTGCCAAGTTGTTCTTAGTTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAACTTTCAAAGTTACTTTGACTTT-CCAAACATGTTTCGAACTAGGAATAGAGCTAGAATTGATAACATCCAG
ATACATGGATTTAA
>chrUn_3257
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-----------------------------TTTTTTT-TCAAAAAGGGGGAGCTCCCCGGCCTCTACATCAGAACGATGCA
GACGGACATACTTATTAATAAGCAAATAGGTTCAACACAAGTCATCATGTCTCAAACAAAAGAACGAAAAATGCTCACAA
AGAGCACAAAAA-G--AAAAGTAAATCCACAACCGGCTGGCATAAAAAAGATAGGAAAACTAATTGCCTATCCTATTACA
TAACCGACATCCAAACCGGTTGAAAATAGTCCGAGCTACCATCTCCCATCGGATAGATCCGGTAACCATACACTTCCTAG
CCTCCGTCGGAGTGAGTAGCGACCACATACGGATCAACGCAGTGGCTCAGAAGATAACCTGCAAAAAA-TGAATGTTTGT
TGTTCTGTTAAAGACCAAATCATTTCTGCAGTTCAAGACTGCCCATAATAAAGCACATACTCCTATACGAATGTGTCTCG
CTGTTTCGGAATCTATCCTGTCAAGCCACGTCCCAAATAACGTGTTGATAGTATTCAGAGGAGTAATATTAAAGGCTAGG
TGAACCGTCCGCCACAATTGTTTTGCCAAAGGGCAGTCAAGAAAGAGGTGTTTGATGGATTCATCCCGATCACAAAAACT
ACATCTTGTAGATCATGTCCAGTTGCGTTTTGCCAAGTTGTCCTTTGTTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAATTTTCAAAAGTACTTTGACTTT-CCAAACATGTTTCAAACTAGGAATAGAGCTAGAGTTGATAACATCCGG
ATACATGGATTTAA
>chr2D_3258
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------------------------------TTTTTT-TTGAAAAGGGGGAGCTCTCCGGCCTCTTCATCAGAATGATGCA
TACGGCCTTA-TTATTAATAAGCAAATAAGTTCAACTCAAGTCTTGATGTCTCAAACAAAAGAACAAAAAATGCTCACAC
AGAGCAG-AAAAAT--AAAAGTAAAGCCACTACTGGCTGGCATAAGAAAGATAGAAAAACTAATTGCCTATCCTATTACA
TAACCGCCATCCAAACCGGTTGAAAATAGCCCGTGCTACCATCTCCCATCGGATAGATCCAGTAACCATACGCTCCCTGG
CCTCCGTCGGAGTGAGTAGCGACCACATACGGATCAACCCAGTGGCTCGGAAGATAACCTGCAAAAAA-TAAACATTTGT
TGTTCTATTAAAGACCAAATCATTTCTGCAGTTCCAGACTGCCCATAATAAAGCACATACTCCTACATGAATGTGTCTCG
CTGTTTCGAAATCTAGCCCGTCAAGCCACGTCCCAAATAACGTGATGATAGTATTCTGATGAGTAATATTAAAGGCTATG
TGAACCGTCCGCCATAATTTTTTG-CCAACGGACATTCAAGAAAGAGGTGTTTGATGGATTCATCCCGATCA-AAAAACT
ACATCTTGTAGATCCTGTCCAGTTGCGTTTTGCCAAGTTGTCCTTAGTTAAAATGACTTGTTTATGTACAAACCACGTAA
ACACTTTAACTTTCAAAGGTACTTTGACTTT-CCAAACATGTTTCGAACTAGGAATAGAGCTAGAATTGATAGCATCCAG
ATACATGGATTTAA
>chr2D_3258
--------------------------------------------------------------------------------
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------------------------------TTTTTT-TTCAAAAGGGGGAGCTCCCCGGCCTCTGCATCAGAACGGTGCA
TACGGCCAACTTAATTAATAAGCAAATAGGTTCAACACAAATCTTAATGTCTCAAACAAAAGAACAAAAAATGCTCACAA
AGAGCAG-AAGAAT--AAAAGTAAAGCCACAACCGGCTGACATAAGAAAGATAGGAAAACTAATTGCCTATCCTATTACA
TGACCGCCATCCAAACCAGTTGAAAATAGCCCATGCTACCATCTCCCATCGGATAGATCCAGTAACCAAACGCTCCCTGG
CCTCTGTCGGAGTGAGTAGCGACCACATATGGATCAACGCAGTGGCTTGGAAGATAACCTGCAAAAAA-TGAATATTTGT
TGTTCTGTTAAAGACCAAATCATTTCTGCAGTTCCAGACTGCCCAAAATAAGGCACATACTCCTACGCGAATGTGTCTCA
CTGTTTCGGAATCTATCCCGTCAAGCCACGTCCCAAATAACGTGCTGACAGTATTCGGAGGAGTAATGTTAAAGGCTATG
TGAACTGTCCGCCATAAAAGTTTTGCCAACGGGCAGTCAAGAAAGAGGTGTTTGATGGATTCATCCCGATCACAAAAACT
ACATCTTGTAGGTCCTGTCCAGTTGCGTTTTGCCAGGTTATCCTTAGTTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAACTTCCAAAGGTACTTTGACTTT-CCAAACATGTTTCGAACTAGGAATGGAGTTCGAATTGATAACATCCAG
ATACATGGATTTAA
>chr2A_3259
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-------------------------------TTTTT-TTGAAAAGGGGGAGCTCTCCGGCCTCTGCATTAGAACGATGCA
TACAACCAAATTAATTAATAAGCAAATAGGTTCAACACAAGTCTTGATGTCTCAAACAAAAGAACAAAAACTGCTCACAA
AGAGCAG-AAAAAATAAAAGTAAAAGCCAGAGCCGGCTGGCATAAAAAATATAGGAAAACTAATTGCCTATCCTATTACA
TAAACGCCATCCAAATCGGTTGAAAATAGCCCGTGCTACCATCTCCCATCGGATAGATCCAGTAACCATACGCTCCCTGG
CCTCCGTCGGAGGGAGTAGCGACCACATACGGATCAACGCAGTGGCTCGGAAGATAGCCTGCAAAAAA-TGGATATTTGT
TGTTCTGTGAAAGACCAAATCATTTCTGTAGTTTCAGACTGCCCATAATAAATCACATACTCCTACACGAATGTGTCTCG
TTGTTTCGAAATCTATCCCGTCAAGCCACGTCCCAAGTAACGTGTTTATAGTATTTGGAGGAGTAATGTTAAAGGCTATG
TGAACTGTCTGCCATAAATTTTTTGCCAACGGGCAGTCAAGAAAAAGGTGTTTGATGGATTCATCCCGATCATAAAAACT
ACATCTTGTAGATCCTGTCCAATTGTGTTTTGCCAAGTTGTCCTTAGTTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAACTTTCAAAGGTACTTTGACTTT-CCAAACACGTTTCGAACTAGGAATAGAGCTAGAATTGATAACATCCAG
ATACATGGATTTAA
>chr6D_3259
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-------------------------------TTTTT-TCGAAAAGGGGGAGCTCCCCGGCCTCTGCATCAGAACGATGCA
TACAGCCATA-TTATTAATAAGCAAATAAGTTCAACTCAGGTCTTGATGTCTCAAACAAAAGAACAAAA--TGCTCACAA
AGAGCAG-AAAAAT--AGAAGTAAAGCCACAACCGGCTGGCATAAGAAAGATATGAAAACTAATTGCCTATCCTATTACA
TAACCGCCATCCAAACCGGTTGAAAATAGCCCGTGCTACCGTCTCCCATCGGATAGATCCAGTGACTATACGCTCCCTGG
CATCCGTCGGAGTGAGTAGCGACCACATACGGATCAACGCAGTGGCTCGGAAGATAACCTGCAAAAAA-TGAATATCTGT
TGTTCTGTTAAAGACCAAATCATTTCTGCAGTTCCAGACTGCCCATAATAAAGCACATACTCCTACACGAATGTGTCTCG
CTGTTTCGGAATCTATCCCGTCAAGCCACGTCTCAAATAACGTGCTGATAGTATTCGAAGGAGTAATATTAAAGGCTATG
TGAACCGTCCACCATT-TTTTTTTGCCAACGAGCAATCAAGAAAGAGGTGTTTGATGGATTCATCCCGATCACAAAAACT
ACATCTTGTAGATCCTGTCCAGTTGCGTTTTGCCAAGTTGTCCTTAATTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAACTTTCAAAGGTACTTTGACTTT-CCAAACATGTTTCGAACTAGGAATAGATCTAGAATTGATAACATCTAG
ATACGTCGATTTAA
>chr7D_3259
--------------------------------------------------------------------------------
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-------------------------------TTTTT-TCGAAACGGGGGAGCTCCCCGGCCTCTGCATCAGAATGATGCA
TACGACCAACTTAATTAATTAGCAAATAGGTTCAAGAGAAGTCTTGATGTCTCAAACAAAAGAACACAAAATGCTCACAA
AGAGCAG-AAAA-T--AAAAGTAAAGCCACAACTGGCTGGCATTAGCAAGATAGGAAAACTAATTGCCTATCCTATTACA
TAACCGCCATCCAAGCCAGTTGAAAATAGCCCGAGCTACCATATCCCATCAGATAGATCCAGTAACCATACGCTCCCTGG
CCTCCGTCGGAGTGAGTAGCGACCACATACGGATCAACGTAGTGGCTCGGAAGATAACCAGCAAAAAA-TGAATATTTGT
TGTTCTGTTAAAGACCAAATCATTTCTGCAGTTCCAGACTGCCCATAATAAAGCACATACTCCTACACGAATGTGTCTCG
CTGTTTCAGAATCTATCCCGTCAAGCCACGTCCCAAATAACGTGTTGATAGTATTCAGATGAGTAATGTTAAAGGCTATG
TGAACCGTCCGCCATAAATTTTTTGCGAACGGGCAGTCAAGAAAGAGGTGTTTGCTGGATTCATCCCGATCACAAAAACT
ACATCTAGTAGATCCTGTCCAGTTGGGTTTTGCCAAGTTGTCCTTAGTTAAAATGACTTGTTTATGTACAAACCACATAA
ACACTTTAACTTTCAAAGGTACTTTGACCTT-CCAAACATGTTTCAAACTAGGAATAGAGCTAGAATTGATAACATCCAG
ATACATGGATTTAA
>chr7D_3267
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---------------------------------------GAAAAGGGGGAGCTCCCCGGTCTCTGTATCAGAACGATACA
TACGGCCAAATTAATTAATAAGCAAATAAGTTCAACTCAAGTCTTGATGTCTCAAACAAAAGAACAAAAAATGCTCACAA
AGAGCAG-AAAAAT--AAAAGTAAAGTCACAACCAGCTGGCATAAGAAAGATAGAAAAACTAATTGTCTATCCTATTACA
TAACCGCCATCCAAACCGGTTGAAAATAGCCCGTGCTATCATCTCTCATCGGATAGATCCAGTAACCATATGCTCCCTGG
CCACCGTCGGAGTGAGTAGCAACCACATACGGATCAACGCAGTGGCTCGGGAGATAACCTGCAAAAAA-TGAATATTGGT
TCTGCTGTTAAAGACCAAATCATTTCTGCAGTTCCAGACTGCCCATAATAAAGCACATACTCCTACACGAATGTGTCTCG
CTGTTTCGGAATCTATCCCGTCAAGCCACGTCCCAAATAACGTGCTGATAGTATTCGGAGGAGTAATATTAAAGGCTATG
TGAATCGTCCGTCATAATTTTTTTGCCAACGGGCAGTCAAGAAAGAGGTGTTTGATGGATTCATCCCGATCACAAAAACT
ACATCTTGTAGATCCTATCCAGTTGCATTTTGCCAAGTTGTCCTTAGTTAAAATGACTTGTTTATGTACAAACTACATAA
ACACTTTAACTTTCAAAGGTACTTTGACTTACCCAAACAAGTTTCGAACTAGGAATAGAGCTGGAGTTGATAACATCCAG
ATACATGGATTTAA
>SNPs
S-------------------------------------------------------------------------------
--------S---S-----------------------S--S-----------------SS---------------------
----------------------------------------------------------S---------------------
-----------------------------S------------------------------------------S-S-----
-----------------------------------------------------------S--S----S------------
---------------------------S-------------------------------------------------S--
-----------------------S---------------------------------SSSS-------------------
----SS--------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
----------------------------------------S--S-----S-----S------------------------
--------------------------------------------------S----------------SSS----------
--------------------------------------------------------------------------------
------------------------------SS----------------S-------------------------------
--------------------------------------------------------------------------------
-----------------------S-------------------S---------S--------------------------
--------------------------------------------------------------------------------
------------------------------------------S--------SSS-----------S--------------
-SSSS--------S-------S----------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------S-----
-S----------------------------------------------------S-------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------SS----S-----------
---------------------------------------S--S-------------------------------------
-------------------S------------------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------S-------S----------------------------------S--------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
----S--------------------------------------S------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
---------------------------SSSS-----S-----S-S--S---S-----S--S---SSS-S---SS------
----SS-------------------------------S-----S------------------------------------
-----S--S--S-S------------------------------------------------------------------
S---------------------------------------------------S-----SSSSS-----------------
-------------------------------------------S------------------------------------
S---------------------------------S-S--------S-S-----S--------------------------
--------------------------------------------------------------------------------
--------------------------------S--------S--------------------S-----------------
---SS-S-----------------------------------S-S----S------------------------------
S--S-------------------------------------S-------------------S------S-----------
------------------S-----------------------------------------------------------S-
-------------------S----------------------------------------S--------------S----
---------------------------------------------------------------S----------------
------------------------S--------------------------------------S-----------S----
--------------------------------------------------------------------------------
--------------
>forward_138
--------------------------------------------------------------------------------
--------------------------------------CTGACTGCGCGCTCAAAATT----------------------
--------------------------------------------------------------------------------
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>reverse_1454
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-------------GGAATTTTCCCGTGCAGGTG-----------------------------------------------
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--------------
>forward_504
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--------------------------------------------------------------------------------
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----GGCAGGGAGGCGTTTCATTA--------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------
>reverse_1903
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------AAGGCTCCAGTTCGACAT
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------
>forward_1412
--------------------------------------------------------------------------------
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--------------------------------CAGCGCACTTGGTTATCCCA----------------------------
--------------------------------------------------------------------------------
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--------------
>reverse_3334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------TCCCGGCCTCTGCATTAGAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
