Multiple sequence alignment - TraesCS2A01G205200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G205200 | chr2A | 100.000 | 2567 | 0 | 0 | 1 | 2567 | 182889102 | 182891668 | 0.000000e+00 | 4741.0 |
1 | TraesCS2A01G205200 | chr2A | 98.909 | 275 | 3 | 0 | 2075 | 2349 | 447006451 | 447006725 | 2.290000e-135 | 492.0 |
2 | TraesCS2A01G205200 | chr2A | 84.298 | 121 | 14 | 3 | 1929 | 2049 | 549956895 | 549956780 | 2.090000e-21 | 113.0 |
3 | TraesCS2A01G205200 | chr2D | 92.873 | 1824 | 77 | 32 | 272 | 2075 | 167706504 | 167704714 | 0.000000e+00 | 2599.0 |
4 | TraesCS2A01G205200 | chr2D | 96.043 | 278 | 11 | 0 | 2072 | 2349 | 625246461 | 625246738 | 1.080000e-123 | 453.0 |
5 | TraesCS2A01G205200 | chr2D | 91.575 | 273 | 9 | 3 | 3 | 263 | 167706817 | 167706547 | 5.220000e-97 | 364.0 |
6 | TraesCS2A01G205200 | chr2D | 95.370 | 216 | 10 | 0 | 2348 | 2563 | 167704717 | 167704502 | 6.800000e-91 | 344.0 |
7 | TraesCS2A01G205200 | chr2D | 86.290 | 124 | 12 | 2 | 1926 | 2049 | 469717407 | 469717289 | 2.070000e-26 | 130.0 |
8 | TraesCS2A01G205200 | chr2D | 94.118 | 51 | 3 | 0 | 381 | 431 | 167706427 | 167706377 | 7.620000e-11 | 78.7 |
9 | TraesCS2A01G205200 | chr2B | 88.323 | 2158 | 85 | 64 | 3 | 2075 | 230282556 | 230284631 | 0.000000e+00 | 2435.0 |
10 | TraesCS2A01G205200 | chr2B | 90.566 | 212 | 11 | 4 | 2348 | 2555 | 230284628 | 230284834 | 3.250000e-69 | 272.0 |
11 | TraesCS2A01G205200 | chr4B | 97.818 | 275 | 6 | 0 | 2075 | 2349 | 300941974 | 300942248 | 2.310000e-130 | 475.0 |
12 | TraesCS2A01G205200 | chrUn | 97.455 | 275 | 7 | 0 | 2075 | 2349 | 288038219 | 288038493 | 1.080000e-128 | 470.0 |
13 | TraesCS2A01G205200 | chr7B | 97.122 | 278 | 8 | 0 | 2072 | 2349 | 553109867 | 553110144 | 1.080000e-128 | 470.0 |
14 | TraesCS2A01G205200 | chr1B | 96.043 | 278 | 11 | 0 | 2075 | 2352 | 345769542 | 345769265 | 1.080000e-123 | 453.0 |
15 | TraesCS2A01G205200 | chr4A | 95.714 | 280 | 12 | 0 | 2075 | 2354 | 452593008 | 452592729 | 3.890000e-123 | 451.0 |
16 | TraesCS2A01G205200 | chr5B | 95.088 | 285 | 13 | 1 | 2069 | 2352 | 110116378 | 110116094 | 5.040000e-122 | 448.0 |
17 | TraesCS2A01G205200 | chr3A | 93.878 | 294 | 16 | 2 | 2069 | 2360 | 20324017 | 20323724 | 2.340000e-120 | 442.0 |
18 | TraesCS2A01G205200 | chr1D | 88.710 | 124 | 9 | 2 | 1926 | 2049 | 464831400 | 464831282 | 2.060000e-31 | 147.0 |
19 | TraesCS2A01G205200 | chr5A | 83.065 | 124 | 17 | 2 | 1926 | 2049 | 546795124 | 546795005 | 2.700000e-20 | 110.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G205200 | chr2A | 182889102 | 182891668 | 2566 | False | 4741.000 | 4741 | 100.0000 | 1 | 2567 | 1 | chr2A.!!$F1 | 2566 |
1 | TraesCS2A01G205200 | chr2D | 167704502 | 167706817 | 2315 | True | 846.425 | 2599 | 93.4840 | 3 | 2563 | 4 | chr2D.!!$R2 | 2560 |
2 | TraesCS2A01G205200 | chr2B | 230282556 | 230284834 | 2278 | False | 1353.500 | 2435 | 89.4445 | 3 | 2555 | 2 | chr2B.!!$F1 | 2552 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
436 | 498 | 0.104487 | TCCCGTTTCGTGTGCAGTAA | 59.896 | 50.0 | 0.0 | 0.0 | 0.0 | 2.24 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2210 | 2318 | 0.029834 | CACATAGCGCTTCCCAATGC | 59.97 | 55.0 | 18.68 | 0.0 | 0.0 | 3.56 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
168 | 191 | 3.394062 | CCGCGGCGCAAACAAAAG | 61.394 | 61.111 | 32.61 | 12.47 | 0.00 | 2.27 |
173 | 196 | 1.061276 | GCGGCGCAAACAAAAGAAAAA | 59.939 | 42.857 | 29.21 | 0.00 | 0.00 | 1.94 |
174 | 197 | 2.286125 | GCGGCGCAAACAAAAGAAAAAT | 60.286 | 40.909 | 29.21 | 0.00 | 0.00 | 1.82 |
178 | 201 | 3.279126 | CGCAAACAAAAGAAAAATGGCG | 58.721 | 40.909 | 0.00 | 0.00 | 34.66 | 5.69 |
275 | 312 | 2.488952 | GAGGATCTCCATCGAAAAGGC | 58.511 | 52.381 | 0.00 | 0.00 | 38.89 | 4.35 |
280 | 317 | 1.369091 | CTCCATCGAAAAGGCCACGG | 61.369 | 60.000 | 5.01 | 0.00 | 0.00 | 4.94 |
308 | 366 | 0.875059 | CAGCTTTCCTCCGTTGGTTC | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
366 | 428 | 0.879090 | ATTTGCTTCCCGTTTCGTCC | 59.121 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
383 | 445 | 2.197605 | CCCGTCCGGTTGCCTTTTT | 61.198 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
399 | 461 | 3.059120 | CCTTTTTCTTCCCGTTTCGTCTC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
435 | 497 | 0.319211 | CTCCCGTTTCGTGTGCAGTA | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
436 | 498 | 0.104487 | TCCCGTTTCGTGTGCAGTAA | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
437 | 499 | 1.153353 | CCCGTTTCGTGTGCAGTAAT | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
451 | 513 | 0.401738 | AGTAATGCAGTGCAGGTGGT | 59.598 | 50.000 | 24.20 | 2.71 | 43.65 | 4.16 |
452 | 514 | 0.523072 | GTAATGCAGTGCAGGTGGTG | 59.477 | 55.000 | 24.20 | 0.00 | 43.65 | 4.17 |
515 | 577 | 1.065273 | GCCGAGCCATCTGCATTTG | 59.935 | 57.895 | 0.00 | 0.00 | 44.83 | 2.32 |
682 | 744 | 2.038426 | CCAGTACTGTCCCAACATGTGA | 59.962 | 50.000 | 21.18 | 0.00 | 34.13 | 3.58 |
685 | 747 | 2.727123 | ACTGTCCCAACATGTGAACA | 57.273 | 45.000 | 0.00 | 0.92 | 34.13 | 3.18 |
709 | 771 | 1.559682 | ACCCACATGTCATCCCTACAC | 59.440 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
712 | 774 | 3.454447 | CCCACATGTCATCCCTACACTAA | 59.546 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
715 | 777 | 5.070981 | CCACATGTCATCCCTACACTAATCT | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 2.40 |
720 | 797 | 3.570125 | TCATCCCTACACTAATCTCGCAG | 59.430 | 47.826 | 0.00 | 0.00 | 0.00 | 5.18 |
731 | 810 | 6.145696 | ACACTAATCTCGCAGTTCAAGTTAAC | 59.854 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
732 | 811 | 6.145534 | CACTAATCTCGCAGTTCAAGTTAACA | 59.854 | 38.462 | 8.61 | 0.00 | 0.00 | 2.41 |
733 | 812 | 4.992381 | ATCTCGCAGTTCAAGTTAACAC | 57.008 | 40.909 | 8.61 | 0.00 | 0.00 | 3.32 |
734 | 813 | 3.787785 | TCTCGCAGTTCAAGTTAACACA | 58.212 | 40.909 | 8.61 | 0.00 | 0.00 | 3.72 |
735 | 814 | 3.554324 | TCTCGCAGTTCAAGTTAACACAC | 59.446 | 43.478 | 8.61 | 0.00 | 0.00 | 3.82 |
737 | 816 | 3.554324 | TCGCAGTTCAAGTTAACACACTC | 59.446 | 43.478 | 8.61 | 0.00 | 0.00 | 3.51 |
738 | 817 | 3.555956 | CGCAGTTCAAGTTAACACACTCT | 59.444 | 43.478 | 8.61 | 0.00 | 0.00 | 3.24 |
739 | 818 | 4.743151 | CGCAGTTCAAGTTAACACACTCTA | 59.257 | 41.667 | 8.61 | 0.00 | 0.00 | 2.43 |
740 | 819 | 5.332355 | CGCAGTTCAAGTTAACACACTCTAC | 60.332 | 44.000 | 8.61 | 0.00 | 0.00 | 2.59 |
741 | 820 | 5.753921 | GCAGTTCAAGTTAACACACTCTACT | 59.246 | 40.000 | 8.61 | 0.00 | 0.00 | 2.57 |
742 | 821 | 6.921857 | GCAGTTCAAGTTAACACACTCTACTA | 59.078 | 38.462 | 8.61 | 0.00 | 0.00 | 1.82 |
743 | 822 | 7.599245 | GCAGTTCAAGTTAACACACTCTACTAT | 59.401 | 37.037 | 8.61 | 0.00 | 0.00 | 2.12 |
773 | 853 | 5.471556 | TTAATTGGACAGTAGGACAACGA | 57.528 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
795 | 876 | 3.386486 | ACGAACAATCAGTGAAGCGTAA | 58.614 | 40.909 | 0.00 | 0.00 | 32.88 | 3.18 |
796 | 877 | 3.805422 | ACGAACAATCAGTGAAGCGTAAA | 59.195 | 39.130 | 0.00 | 0.00 | 32.88 | 2.01 |
797 | 878 | 4.271533 | ACGAACAATCAGTGAAGCGTAAAA | 59.728 | 37.500 | 0.00 | 0.00 | 32.88 | 1.52 |
830 | 912 | 1.553706 | ACATTCTACCGTCCTTCCGT | 58.446 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
831 | 913 | 1.897802 | ACATTCTACCGTCCTTCCGTT | 59.102 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
832 | 914 | 2.094338 | ACATTCTACCGTCCTTCCGTTC | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
833 | 915 | 0.890683 | TTCTACCGTCCTTCCGTTCC | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
834 | 916 | 1.138247 | CTACCGTCCTTCCGTTCCG | 59.862 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
835 | 917 | 1.589716 | CTACCGTCCTTCCGTTCCGT | 61.590 | 60.000 | 0.00 | 0.00 | 0.00 | 4.69 |
902 | 984 | 4.217767 | GGAACAAGAATAAAACCGGAAGCT | 59.782 | 41.667 | 9.46 | 0.00 | 0.00 | 3.74 |
1107 | 1203 | 3.217743 | GCCGTCCTCTACCTCCCG | 61.218 | 72.222 | 0.00 | 0.00 | 0.00 | 5.14 |
1110 | 1206 | 3.902086 | GTCCTCTACCTCCCGCGC | 61.902 | 72.222 | 0.00 | 0.00 | 0.00 | 6.86 |
1222 | 1318 | 0.263468 | GACCCTAGCTCCTCCTCCTT | 59.737 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1224 | 1320 | 0.471022 | CCCTAGCTCCTCCTCCTTCC | 60.471 | 65.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1625 | 1730 | 1.326245 | GCGTTGGCTTTGACAAAAACC | 59.674 | 47.619 | 11.17 | 11.17 | 29.78 | 3.27 |
1680 | 1785 | 4.031878 | CGAGTGCCGTTCTTTATTCTCTTC | 59.968 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
1697 | 1805 | 8.900983 | ATTCTCTTCATTACTTAGATGCTTCC | 57.099 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
1808 | 1916 | 3.334691 | TGGCGAGTTTAGTTTGATCCTG | 58.665 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1816 | 1924 | 7.483580 | AGTTTAGTTTGATCCTGCTACTACT | 57.516 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1817 | 1925 | 7.908453 | AGTTTAGTTTGATCCTGCTACTACTT | 58.092 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1919 | 2027 | 2.935201 | CCAAGCATCTTGAGCTAGTGTC | 59.065 | 50.000 | 8.04 | 0.00 | 42.53 | 3.67 |
1949 | 2057 | 0.456221 | AGCACTACAAGATCGTCCGG | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2049 | 2157 | 6.580041 | CAGATTGTGCTTGAGTTTCATGTTAC | 59.420 | 38.462 | 0.00 | 0.00 | 0.00 | 2.50 |
2050 | 2158 | 4.466567 | TGTGCTTGAGTTTCATGTTACG | 57.533 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
2052 | 2160 | 4.754618 | TGTGCTTGAGTTTCATGTTACGAT | 59.245 | 37.500 | 0.00 | 0.00 | 0.00 | 3.73 |
2053 | 2161 | 5.929415 | TGTGCTTGAGTTTCATGTTACGATA | 59.071 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2075 | 2183 | 5.528043 | AGATAGCTTGGTGATACACTGAG | 57.472 | 43.478 | 0.00 | 0.00 | 34.40 | 3.35 |
2076 | 2184 | 4.343526 | AGATAGCTTGGTGATACACTGAGG | 59.656 | 45.833 | 0.00 | 0.00 | 34.40 | 3.86 |
2077 | 2185 | 1.065854 | AGCTTGGTGATACACTGAGGC | 60.066 | 52.381 | 0.00 | 0.00 | 34.40 | 4.70 |
2078 | 2186 | 1.065854 | GCTTGGTGATACACTGAGGCT | 60.066 | 52.381 | 0.00 | 0.00 | 34.40 | 4.58 |
2079 | 2187 | 2.625737 | CTTGGTGATACACTGAGGCTG | 58.374 | 52.381 | 0.00 | 0.00 | 34.40 | 4.85 |
2080 | 2188 | 0.904649 | TGGTGATACACTGAGGCTGG | 59.095 | 55.000 | 0.00 | 0.00 | 34.40 | 4.85 |
2081 | 2189 | 0.905357 | GGTGATACACTGAGGCTGGT | 59.095 | 55.000 | 0.00 | 0.00 | 34.40 | 4.00 |
2082 | 2190 | 1.134670 | GGTGATACACTGAGGCTGGTC | 60.135 | 57.143 | 0.00 | 0.00 | 34.40 | 4.02 |
2083 | 2191 | 1.550524 | GTGATACACTGAGGCTGGTCA | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
2084 | 2192 | 2.169352 | GTGATACACTGAGGCTGGTCAT | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2085 | 2193 | 3.384789 | GTGATACACTGAGGCTGGTCATA | 59.615 | 47.826 | 0.00 | 0.00 | 0.00 | 2.15 |
2086 | 2194 | 3.638627 | TGATACACTGAGGCTGGTCATAG | 59.361 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
2087 | 2195 | 1.944177 | ACACTGAGGCTGGTCATAGT | 58.056 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2088 | 2196 | 1.552337 | ACACTGAGGCTGGTCATAGTG | 59.448 | 52.381 | 0.00 | 0.00 | 31.88 | 2.74 |
2089 | 2197 | 1.134580 | CACTGAGGCTGGTCATAGTGG | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
2090 | 2198 | 1.273267 | ACTGAGGCTGGTCATAGTGGA | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
2091 | 2199 | 1.411977 | CTGAGGCTGGTCATAGTGGAG | 59.588 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
2092 | 2200 | 1.007118 | TGAGGCTGGTCATAGTGGAGA | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
2093 | 2201 | 1.686052 | GAGGCTGGTCATAGTGGAGAG | 59.314 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
2094 | 2202 | 1.007721 | AGGCTGGTCATAGTGGAGAGT | 59.992 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
2095 | 2203 | 2.245028 | AGGCTGGTCATAGTGGAGAGTA | 59.755 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2096 | 2204 | 3.031736 | GGCTGGTCATAGTGGAGAGTAA | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2097 | 2205 | 3.181474 | GGCTGGTCATAGTGGAGAGTAAC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 2.50 |
2098 | 2206 | 3.702045 | GCTGGTCATAGTGGAGAGTAACT | 59.298 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
2099 | 2207 | 4.160626 | GCTGGTCATAGTGGAGAGTAACTT | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
2100 | 2208 | 5.360144 | GCTGGTCATAGTGGAGAGTAACTTA | 59.640 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2101 | 2209 | 6.460399 | GCTGGTCATAGTGGAGAGTAACTTAG | 60.460 | 46.154 | 0.00 | 0.00 | 0.00 | 2.18 |
2102 | 2210 | 6.728411 | TGGTCATAGTGGAGAGTAACTTAGA | 58.272 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2103 | 2211 | 6.602406 | TGGTCATAGTGGAGAGTAACTTAGAC | 59.398 | 42.308 | 0.00 | 0.00 | 32.58 | 2.59 |
2104 | 2212 | 6.829811 | GGTCATAGTGGAGAGTAACTTAGACT | 59.170 | 42.308 | 0.00 | 0.00 | 33.27 | 3.24 |
2105 | 2213 | 7.992033 | GGTCATAGTGGAGAGTAACTTAGACTA | 59.008 | 40.741 | 0.00 | 0.00 | 33.27 | 2.59 |
2106 | 2214 | 9.048446 | GTCATAGTGGAGAGTAACTTAGACTAG | 57.952 | 40.741 | 0.00 | 0.00 | 31.58 | 2.57 |
2107 | 2215 | 8.770322 | TCATAGTGGAGAGTAACTTAGACTAGT | 58.230 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2110 | 2218 | 8.791327 | AGTGGAGAGTAACTTAGACTAGTAAC | 57.209 | 38.462 | 0.00 | 0.00 | 0.00 | 2.50 |
2111 | 2219 | 8.381636 | AGTGGAGAGTAACTTAGACTAGTAACA | 58.618 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2112 | 2220 | 9.176460 | GTGGAGAGTAACTTAGACTAGTAACAT | 57.824 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
2113 | 2221 | 9.175312 | TGGAGAGTAACTTAGACTAGTAACATG | 57.825 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
2114 | 2222 | 9.176460 | GGAGAGTAACTTAGACTAGTAACATGT | 57.824 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
2151 | 2259 | 9.756571 | AGTCTATATTACTACCTTCATAGTGGG | 57.243 | 37.037 | 0.00 | 0.00 | 36.09 | 4.61 |
2152 | 2260 | 9.531158 | GTCTATATTACTACCTTCATAGTGGGT | 57.469 | 37.037 | 0.00 | 0.00 | 36.09 | 4.51 |
2162 | 2270 | 9.702253 | CTACCTTCATAGTGGGTAGTATCATAT | 57.298 | 37.037 | 9.46 | 0.00 | 44.30 | 1.78 |
2168 | 2276 | 9.421399 | TCATAGTGGGTAGTATCATATATGTGG | 57.579 | 37.037 | 12.42 | 0.00 | 0.00 | 4.17 |
2169 | 2277 | 9.201989 | CATAGTGGGTAGTATCATATATGTGGT | 57.798 | 37.037 | 12.42 | 0.00 | 0.00 | 4.16 |
2172 | 2280 | 9.032624 | AGTGGGTAGTATCATATATGTGGTAAC | 57.967 | 37.037 | 12.42 | 7.05 | 0.00 | 2.50 |
2211 | 2319 | 8.519492 | TTTATTGCTTTGTAGACTCATTTTGC | 57.481 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
2212 | 2320 | 5.512753 | TTGCTTTGTAGACTCATTTTGCA | 57.487 | 34.783 | 0.00 | 0.00 | 0.00 | 4.08 |
2213 | 2321 | 5.710513 | TGCTTTGTAGACTCATTTTGCAT | 57.289 | 34.783 | 0.00 | 0.00 | 0.00 | 3.96 |
2214 | 2322 | 6.088016 | TGCTTTGTAGACTCATTTTGCATT | 57.912 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2215 | 2323 | 5.921976 | TGCTTTGTAGACTCATTTTGCATTG | 59.078 | 36.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2216 | 2324 | 5.346822 | GCTTTGTAGACTCATTTTGCATTGG | 59.653 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2217 | 2325 | 5.389859 | TTGTAGACTCATTTTGCATTGGG | 57.610 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
2218 | 2326 | 4.661222 | TGTAGACTCATTTTGCATTGGGA | 58.339 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
2219 | 2327 | 5.076182 | TGTAGACTCATTTTGCATTGGGAA | 58.924 | 37.500 | 0.00 | 0.00 | 0.00 | 3.97 |
2220 | 2328 | 4.796038 | AGACTCATTTTGCATTGGGAAG | 57.204 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
2221 | 2329 | 3.056322 | AGACTCATTTTGCATTGGGAAGC | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
2222 | 2330 | 2.264813 | CTCATTTTGCATTGGGAAGCG | 58.735 | 47.619 | 0.00 | 0.00 | 0.00 | 4.68 |
2223 | 2331 | 0.722848 | CATTTTGCATTGGGAAGCGC | 59.277 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
2224 | 2332 | 0.609662 | ATTTTGCATTGGGAAGCGCT | 59.390 | 45.000 | 2.64 | 2.64 | 0.00 | 5.92 |
2225 | 2333 | 1.252175 | TTTTGCATTGGGAAGCGCTA | 58.748 | 45.000 | 12.05 | 0.00 | 0.00 | 4.26 |
2226 | 2334 | 1.473258 | TTTGCATTGGGAAGCGCTAT | 58.527 | 45.000 | 12.05 | 0.00 | 0.00 | 2.97 |
2227 | 2335 | 0.740149 | TTGCATTGGGAAGCGCTATG | 59.260 | 50.000 | 12.05 | 11.94 | 34.15 | 2.23 |
2228 | 2336 | 0.394216 | TGCATTGGGAAGCGCTATGT | 60.394 | 50.000 | 12.05 | 0.00 | 33.74 | 2.29 |
2229 | 2337 | 0.029834 | GCATTGGGAAGCGCTATGTG | 59.970 | 55.000 | 12.05 | 5.56 | 33.74 | 3.21 |
2230 | 2338 | 1.667236 | CATTGGGAAGCGCTATGTGA | 58.333 | 50.000 | 12.05 | 0.00 | 0.00 | 3.58 |
2231 | 2339 | 2.224606 | CATTGGGAAGCGCTATGTGAT | 58.775 | 47.619 | 12.05 | 0.00 | 0.00 | 3.06 |
2232 | 2340 | 1.667236 | TTGGGAAGCGCTATGTGATG | 58.333 | 50.000 | 12.05 | 0.00 | 0.00 | 3.07 |
2233 | 2341 | 0.179048 | TGGGAAGCGCTATGTGATGG | 60.179 | 55.000 | 12.05 | 0.00 | 0.00 | 3.51 |
2234 | 2342 | 0.179045 | GGGAAGCGCTATGTGATGGT | 60.179 | 55.000 | 12.05 | 0.00 | 0.00 | 3.55 |
2235 | 2343 | 1.070134 | GGGAAGCGCTATGTGATGGTA | 59.930 | 52.381 | 12.05 | 0.00 | 0.00 | 3.25 |
2236 | 2344 | 2.484770 | GGGAAGCGCTATGTGATGGTAA | 60.485 | 50.000 | 12.05 | 0.00 | 0.00 | 2.85 |
2237 | 2345 | 2.544267 | GGAAGCGCTATGTGATGGTAAC | 59.456 | 50.000 | 12.05 | 0.00 | 0.00 | 2.50 |
2266 | 2374 | 8.540507 | TTATGTTACTCTATTTGCCTCTCTCT | 57.459 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
2267 | 2375 | 6.859112 | TGTTACTCTATTTGCCTCTCTCTT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2268 | 2376 | 6.868622 | TGTTACTCTATTTGCCTCTCTCTTC | 58.131 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2269 | 2377 | 6.437477 | TGTTACTCTATTTGCCTCTCTCTTCA | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2270 | 2378 | 7.124901 | TGTTACTCTATTTGCCTCTCTCTTCAT | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2271 | 2379 | 6.558488 | ACTCTATTTGCCTCTCTCTTCATT | 57.442 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2272 | 2380 | 7.667575 | ACTCTATTTGCCTCTCTCTTCATTA | 57.332 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2273 | 2381 | 8.083828 | ACTCTATTTGCCTCTCTCTTCATTAA | 57.916 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2274 | 2382 | 7.984617 | ACTCTATTTGCCTCTCTCTTCATTAAC | 59.015 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2275 | 2383 | 8.083828 | TCTATTTGCCTCTCTCTTCATTAACT | 57.916 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2276 | 2384 | 9.201989 | TCTATTTGCCTCTCTCTTCATTAACTA | 57.798 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2277 | 2385 | 9.823647 | CTATTTGCCTCTCTCTTCATTAACTAA | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2279 | 2387 | 9.692325 | ATTTGCCTCTCTCTTCATTAACTAATT | 57.308 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2280 | 2388 | 8.498054 | TTGCCTCTCTCTTCATTAACTAATTG | 57.502 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2281 | 2389 | 6.540189 | TGCCTCTCTCTTCATTAACTAATTGC | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
2282 | 2390 | 6.017523 | GCCTCTCTCTTCATTAACTAATTGCC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 4.52 |
2283 | 2391 | 7.050377 | CCTCTCTCTTCATTAACTAATTGCCA | 58.950 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
2284 | 2392 | 7.011857 | CCTCTCTCTTCATTAACTAATTGCCAC | 59.988 | 40.741 | 0.00 | 0.00 | 0.00 | 5.01 |
2285 | 2393 | 6.823689 | TCTCTCTTCATTAACTAATTGCCACC | 59.176 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
2286 | 2394 | 6.721318 | TCTCTTCATTAACTAATTGCCACCT | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2287 | 2395 | 6.823689 | TCTCTTCATTAACTAATTGCCACCTC | 59.176 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2288 | 2396 | 6.480763 | TCTTCATTAACTAATTGCCACCTCA | 58.519 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2289 | 2397 | 7.118723 | TCTTCATTAACTAATTGCCACCTCAT | 58.881 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2290 | 2398 | 6.942532 | TCATTAACTAATTGCCACCTCATC | 57.057 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
2291 | 2399 | 6.422333 | TCATTAACTAATTGCCACCTCATCA | 58.578 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2292 | 2400 | 6.318648 | TCATTAACTAATTGCCACCTCATCAC | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2293 | 2401 | 4.307032 | AACTAATTGCCACCTCATCACT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2294 | 2402 | 4.307032 | ACTAATTGCCACCTCATCACTT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2295 | 2403 | 4.666512 | ACTAATTGCCACCTCATCACTTT | 58.333 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2296 | 2404 | 5.079643 | ACTAATTGCCACCTCATCACTTTT | 58.920 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
2297 | 2405 | 3.947910 | ATTGCCACCTCATCACTTTTG | 57.052 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
2298 | 2406 | 0.961019 | TGCCACCTCATCACTTTTGC | 59.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2299 | 2407 | 1.251251 | GCCACCTCATCACTTTTGCT | 58.749 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2300 | 2408 | 1.615392 | GCCACCTCATCACTTTTGCTT | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
2301 | 2409 | 2.608752 | GCCACCTCATCACTTTTGCTTG | 60.609 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2302 | 2410 | 2.624838 | CCACCTCATCACTTTTGCTTGT | 59.375 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2303 | 2411 | 3.551454 | CCACCTCATCACTTTTGCTTGTG | 60.551 | 47.826 | 0.00 | 0.00 | 35.68 | 3.33 |
2304 | 2412 | 3.067180 | CACCTCATCACTTTTGCTTGTGT | 59.933 | 43.478 | 0.00 | 0.00 | 35.82 | 3.72 |
2305 | 2413 | 3.067180 | ACCTCATCACTTTTGCTTGTGTG | 59.933 | 43.478 | 0.00 | 0.00 | 35.82 | 3.82 |
2306 | 2414 | 3.551454 | CCTCATCACTTTTGCTTGTGTGG | 60.551 | 47.826 | 0.00 | 0.00 | 35.82 | 4.17 |
2307 | 2415 | 2.129607 | CATCACTTTTGCTTGTGTGGC | 58.870 | 47.619 | 0.00 | 0.00 | 35.82 | 5.01 |
2308 | 2416 | 1.180907 | TCACTTTTGCTTGTGTGGCA | 58.819 | 45.000 | 0.00 | 0.00 | 37.97 | 4.92 |
2309 | 2417 | 1.755959 | TCACTTTTGCTTGTGTGGCAT | 59.244 | 42.857 | 0.00 | 0.00 | 39.54 | 4.40 |
2310 | 2418 | 2.129607 | CACTTTTGCTTGTGTGGCATC | 58.870 | 47.619 | 0.00 | 0.00 | 39.54 | 3.91 |
2311 | 2419 | 2.034124 | ACTTTTGCTTGTGTGGCATCT | 58.966 | 42.857 | 0.00 | 0.00 | 39.54 | 2.90 |
2312 | 2420 | 3.004629 | CACTTTTGCTTGTGTGGCATCTA | 59.995 | 43.478 | 0.00 | 0.00 | 39.54 | 1.98 |
2313 | 2421 | 3.636300 | ACTTTTGCTTGTGTGGCATCTAA | 59.364 | 39.130 | 0.00 | 0.00 | 39.54 | 2.10 |
2314 | 2422 | 3.921119 | TTTGCTTGTGTGGCATCTAAG | 57.079 | 42.857 | 0.00 | 0.00 | 39.54 | 2.18 |
2315 | 2423 | 2.566833 | TGCTTGTGTGGCATCTAAGT | 57.433 | 45.000 | 0.00 | 0.00 | 34.56 | 2.24 |
2316 | 2424 | 2.862541 | TGCTTGTGTGGCATCTAAGTT | 58.137 | 42.857 | 0.00 | 0.00 | 34.56 | 2.66 |
2317 | 2425 | 4.014569 | TGCTTGTGTGGCATCTAAGTTA | 57.985 | 40.909 | 0.00 | 0.00 | 34.56 | 2.24 |
2318 | 2426 | 3.751175 | TGCTTGTGTGGCATCTAAGTTAC | 59.249 | 43.478 | 0.00 | 0.00 | 34.56 | 2.50 |
2319 | 2427 | 4.003648 | GCTTGTGTGGCATCTAAGTTACT | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2320 | 2428 | 5.175859 | GCTTGTGTGGCATCTAAGTTACTA | 58.824 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2321 | 2429 | 5.063564 | GCTTGTGTGGCATCTAAGTTACTAC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2322 | 2430 | 5.080969 | TGTGTGGCATCTAAGTTACTACC | 57.919 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2323 | 2431 | 4.775780 | TGTGTGGCATCTAAGTTACTACCT | 59.224 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
2324 | 2432 | 5.953548 | TGTGTGGCATCTAAGTTACTACCTA | 59.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2325 | 2433 | 6.610020 | TGTGTGGCATCTAAGTTACTACCTAT | 59.390 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2326 | 2434 | 6.924060 | GTGTGGCATCTAAGTTACTACCTATG | 59.076 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
2327 | 2435 | 6.610020 | TGTGGCATCTAAGTTACTACCTATGT | 59.390 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
2328 | 2436 | 7.125204 | TGTGGCATCTAAGTTACTACCTATGTT | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
2329 | 2437 | 8.636213 | GTGGCATCTAAGTTACTACCTATGTTA | 58.364 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2330 | 2438 | 8.636213 | TGGCATCTAAGTTACTACCTATGTTAC | 58.364 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
2331 | 2439 | 8.858094 | GGCATCTAAGTTACTACCTATGTTACT | 58.142 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2332 | 2440 | 9.896263 | GCATCTAAGTTACTACCTATGTTACTC | 57.104 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2334 | 2442 | 8.986929 | TCTAAGTTACTACCTATGTTACTCCC | 57.013 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2335 | 2443 | 8.560039 | TCTAAGTTACTACCTATGTTACTCCCA | 58.440 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
2336 | 2444 | 7.415592 | AAGTTACTACCTATGTTACTCCCAC | 57.584 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2337 | 2445 | 6.739664 | AGTTACTACCTATGTTACTCCCACT | 58.260 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2338 | 2446 | 7.876371 | AGTTACTACCTATGTTACTCCCACTA | 58.124 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
2339 | 2447 | 8.509441 | AGTTACTACCTATGTTACTCCCACTAT | 58.491 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2340 | 2448 | 8.574737 | GTTACTACCTATGTTACTCCCACTATG | 58.425 | 40.741 | 0.00 | 0.00 | 0.00 | 2.23 |
2341 | 2449 | 6.919158 | ACTACCTATGTTACTCCCACTATGA | 58.081 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2342 | 2450 | 6.776603 | ACTACCTATGTTACTCCCACTATGAC | 59.223 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
2343 | 2451 | 4.900054 | ACCTATGTTACTCCCACTATGACC | 59.100 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
2344 | 2452 | 4.899457 | CCTATGTTACTCCCACTATGACCA | 59.101 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
2345 | 2453 | 5.011125 | CCTATGTTACTCCCACTATGACCAG | 59.989 | 48.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2346 | 2454 | 2.500098 | TGTTACTCCCACTATGACCAGC | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2347 | 2455 | 1.789523 | TACTCCCACTATGACCAGCC | 58.210 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2348 | 2456 | 0.043334 | ACTCCCACTATGACCAGCCT | 59.957 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2349 | 2457 | 0.467384 | CTCCCACTATGACCAGCCTG | 59.533 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2350 | 2458 | 0.042581 | TCCCACTATGACCAGCCTGA | 59.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2385 | 2493 | 3.066481 | GCTGCTTGGATCTGGAGAAAATC | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
2417 | 2525 | 2.741517 | TGGCGACACATGTGTAAAGATG | 59.258 | 45.455 | 30.63 | 16.51 | 45.05 | 2.90 |
2419 | 2527 | 2.095853 | GCGACACATGTGTAAAGATGGG | 59.904 | 50.000 | 30.63 | 13.21 | 45.05 | 4.00 |
2477 | 2585 | 3.857052 | TGCTCACGAAATTAGGTCGATT | 58.143 | 40.909 | 5.09 | 0.00 | 41.02 | 3.34 |
2515 | 2627 | 1.630369 | ACTCCTGCTGTGCCATCTAAA | 59.370 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2556 | 2668 | 2.961424 | GCTGCTTTGCCTCCCTTTA | 58.039 | 52.632 | 0.00 | 0.00 | 0.00 | 1.85 |
2563 | 2675 | 4.705023 | TGCTTTGCCTCCCTTTAGAAATAC | 59.295 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
2564 | 2676 | 4.705023 | GCTTTGCCTCCCTTTAGAAATACA | 59.295 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
2565 | 2677 | 5.360999 | GCTTTGCCTCCCTTTAGAAATACAT | 59.639 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2566 | 2678 | 6.546034 | GCTTTGCCTCCCTTTAGAAATACATA | 59.454 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.708051 | CTCAGGTCAGGTCGTACTGTA | 58.292 | 52.381 | 8.51 | 0.00 | 39.48 | 2.74 |
1 | 2 | 1.535833 | CTCAGGTCAGGTCGTACTGT | 58.464 | 55.000 | 8.51 | 0.00 | 39.48 | 3.55 |
178 | 201 | 3.781162 | GTTAACGTGTCGGGGCGC | 61.781 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
235 | 259 | 2.410469 | GTATCCGTCACCCGTCGG | 59.590 | 66.667 | 3.60 | 3.60 | 46.93 | 4.79 |
280 | 317 | 2.436824 | GGAAAGCTGACGGGCCTC | 60.437 | 66.667 | 0.84 | 0.00 | 0.00 | 4.70 |
366 | 428 | 1.170290 | AGAAAAAGGCAACCGGACGG | 61.170 | 55.000 | 9.46 | 9.56 | 42.03 | 4.79 |
383 | 445 | 0.239347 | GACGAGACGAAACGGGAAGA | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
399 | 461 | 1.574702 | GAGGAAAAGGCAACCGGACG | 61.575 | 60.000 | 9.46 | 0.00 | 37.17 | 4.79 |
435 | 497 | 1.904865 | CCACCACCTGCACTGCATT | 60.905 | 57.895 | 3.64 | 0.00 | 38.13 | 3.56 |
436 | 498 | 2.282674 | CCACCACCTGCACTGCAT | 60.283 | 61.111 | 3.64 | 0.00 | 38.13 | 3.96 |
642 | 704 | 4.202441 | CTGGGGAAATTGACCAGTATCTG | 58.798 | 47.826 | 12.74 | 0.00 | 45.21 | 2.90 |
685 | 747 | 0.552848 | GGGATGACATGTGGGTCCAT | 59.447 | 55.000 | 1.15 | 0.00 | 36.97 | 3.41 |
709 | 771 | 6.145534 | TGTGTTAACTTGAACTGCGAGATTAG | 59.854 | 38.462 | 7.22 | 0.00 | 0.00 | 1.73 |
712 | 774 | 4.211374 | GTGTGTTAACTTGAACTGCGAGAT | 59.789 | 41.667 | 7.22 | 0.00 | 0.00 | 2.75 |
715 | 777 | 3.527533 | AGTGTGTTAACTTGAACTGCGA | 58.472 | 40.909 | 7.22 | 0.00 | 0.00 | 5.10 |
763 | 843 | 3.979948 | TGATTGTTCGTTCGTTGTCCTA | 58.020 | 40.909 | 0.00 | 0.00 | 0.00 | 2.94 |
773 | 853 | 2.210116 | ACGCTTCACTGATTGTTCGTT | 58.790 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
795 | 876 | 5.066968 | AGAATGTTGTGTTCAAACCGTTT | 57.933 | 34.783 | 0.00 | 0.00 | 35.20 | 3.60 |
796 | 877 | 4.712122 | AGAATGTTGTGTTCAAACCGTT | 57.288 | 36.364 | 0.00 | 0.00 | 35.20 | 4.44 |
797 | 878 | 4.035909 | GGTAGAATGTTGTGTTCAAACCGT | 59.964 | 41.667 | 0.00 | 0.00 | 35.20 | 4.83 |
804 | 886 | 3.660865 | AGGACGGTAGAATGTTGTGTTC | 58.339 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
830 | 912 | 2.048597 | CTGCAGGTACGCACGGAA | 60.049 | 61.111 | 5.57 | 0.00 | 36.86 | 4.30 |
831 | 913 | 2.089887 | TTTCTGCAGGTACGCACGGA | 62.090 | 55.000 | 15.13 | 0.00 | 36.86 | 4.69 |
832 | 914 | 1.225376 | TTTTCTGCAGGTACGCACGG | 61.225 | 55.000 | 15.13 | 0.00 | 36.86 | 4.94 |
833 | 915 | 0.584396 | TTTTTCTGCAGGTACGCACG | 59.416 | 50.000 | 15.13 | 0.00 | 36.86 | 5.34 |
902 | 984 | 1.442184 | GCAAACGAGACGAGCGAGA | 60.442 | 57.895 | 0.00 | 0.00 | 0.00 | 4.04 |
963 | 1050 | 5.303165 | AGTGTAGTAGTGGTTAAAGCCAAC | 58.697 | 41.667 | 0.00 | 0.00 | 40.68 | 3.77 |
980 | 1072 | 1.481871 | TTAAGGCGGGAGGAGTGTAG | 58.518 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
981 | 1073 | 1.941377 | TTTAAGGCGGGAGGAGTGTA | 58.059 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
982 | 1074 | 1.065418 | CATTTAAGGCGGGAGGAGTGT | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
1110 | 1206 | 3.972971 | GAGCAGCTGCAGGAGTGGG | 62.973 | 68.421 | 38.24 | 0.00 | 45.16 | 4.61 |
1113 | 1209 | 2.607134 | AGGAGCAGCTGCAGGAGT | 60.607 | 61.111 | 38.24 | 19.47 | 45.16 | 3.85 |
1209 | 1305 | 2.370633 | GGGGAAGGAGGAGGAGCT | 59.629 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
1298 | 1394 | 2.731691 | GAACACGCTCTGGGGCTTCA | 62.732 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1625 | 1730 | 4.027458 | CGCCGAATCAGCAAAATGTATTTG | 60.027 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
1680 | 1785 | 4.454678 | TGCAGGGAAGCATCTAAGTAATG | 58.545 | 43.478 | 0.00 | 0.00 | 40.11 | 1.90 |
1693 | 1801 | 2.880890 | GCCTATGTACATTGCAGGGAAG | 59.119 | 50.000 | 20.07 | 7.84 | 0.00 | 3.46 |
1694 | 1802 | 2.509548 | AGCCTATGTACATTGCAGGGAA | 59.490 | 45.455 | 23.81 | 2.51 | 0.00 | 3.97 |
1695 | 1803 | 2.126882 | AGCCTATGTACATTGCAGGGA | 58.873 | 47.619 | 23.81 | 3.15 | 0.00 | 4.20 |
1696 | 1804 | 2.224606 | CAGCCTATGTACATTGCAGGG | 58.775 | 52.381 | 23.81 | 15.37 | 0.00 | 4.45 |
1697 | 1805 | 2.224606 | CCAGCCTATGTACATTGCAGG | 58.775 | 52.381 | 23.81 | 21.80 | 0.00 | 4.85 |
1808 | 1916 | 6.647895 | TGGCACAAAAACTAGTAAGTAGTAGC | 59.352 | 38.462 | 0.00 | 0.00 | 36.63 | 3.58 |
1919 | 2027 | 8.508062 | ACGATCTTGTAGTGCTAATCATAGTAG | 58.492 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2049 | 2157 | 6.072452 | TCAGTGTATCACCAAGCTATCTATCG | 60.072 | 42.308 | 0.00 | 0.00 | 34.49 | 2.92 |
2050 | 2158 | 7.220741 | TCAGTGTATCACCAAGCTATCTATC | 57.779 | 40.000 | 0.00 | 0.00 | 34.49 | 2.08 |
2052 | 2160 | 5.536538 | CCTCAGTGTATCACCAAGCTATCTA | 59.463 | 44.000 | 0.00 | 0.00 | 34.49 | 1.98 |
2053 | 2161 | 4.343526 | CCTCAGTGTATCACCAAGCTATCT | 59.656 | 45.833 | 0.00 | 0.00 | 34.49 | 1.98 |
2075 | 2183 | 1.490574 | ACTCTCCACTATGACCAGCC | 58.509 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2076 | 2184 | 3.702045 | AGTTACTCTCCACTATGACCAGC | 59.298 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
2077 | 2185 | 5.923733 | AAGTTACTCTCCACTATGACCAG | 57.076 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2078 | 2186 | 6.602406 | GTCTAAGTTACTCTCCACTATGACCA | 59.398 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
2079 | 2187 | 6.829811 | AGTCTAAGTTACTCTCCACTATGACC | 59.170 | 42.308 | 0.00 | 0.00 | 31.22 | 4.02 |
2080 | 2188 | 7.868906 | AGTCTAAGTTACTCTCCACTATGAC | 57.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2081 | 2189 | 8.770322 | ACTAGTCTAAGTTACTCTCCACTATGA | 58.230 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
2082 | 2190 | 8.967664 | ACTAGTCTAAGTTACTCTCCACTATG | 57.032 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
2084 | 2192 | 9.883142 | GTTACTAGTCTAAGTTACTCTCCACTA | 57.117 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2085 | 2193 | 8.381636 | TGTTACTAGTCTAAGTTACTCTCCACT | 58.618 | 37.037 | 0.00 | 0.00 | 31.82 | 4.00 |
2086 | 2194 | 8.558973 | TGTTACTAGTCTAAGTTACTCTCCAC | 57.441 | 38.462 | 0.00 | 0.00 | 31.82 | 4.02 |
2087 | 2195 | 9.175312 | CATGTTACTAGTCTAAGTTACTCTCCA | 57.825 | 37.037 | 0.00 | 0.00 | 31.82 | 3.86 |
2088 | 2196 | 9.176460 | ACATGTTACTAGTCTAAGTTACTCTCC | 57.824 | 37.037 | 0.00 | 0.00 | 31.82 | 3.71 |
2125 | 2233 | 9.756571 | CCCACTATGAAGGTAGTAATATAGACT | 57.243 | 37.037 | 0.00 | 0.00 | 33.29 | 3.24 |
2126 | 2234 | 9.531158 | ACCCACTATGAAGGTAGTAATATAGAC | 57.469 | 37.037 | 0.00 | 0.00 | 33.29 | 2.59 |
2142 | 2250 | 9.421399 | CCACATATATGATACTACCCACTATGA | 57.579 | 37.037 | 19.63 | 0.00 | 0.00 | 2.15 |
2143 | 2251 | 9.201989 | ACCACATATATGATACTACCCACTATG | 57.798 | 37.037 | 19.63 | 1.97 | 0.00 | 2.23 |
2146 | 2254 | 9.032624 | GTTACCACATATATGATACTACCCACT | 57.967 | 37.037 | 19.63 | 0.00 | 0.00 | 4.00 |
2147 | 2255 | 8.809066 | TGTTACCACATATATGATACTACCCAC | 58.191 | 37.037 | 19.63 | 4.89 | 0.00 | 4.61 |
2148 | 2256 | 8.959676 | TGTTACCACATATATGATACTACCCA | 57.040 | 34.615 | 19.63 | 3.75 | 0.00 | 4.51 |
2185 | 2293 | 9.143631 | GCAAAATGAGTCTACAAAGCAATAAAT | 57.856 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2186 | 2294 | 8.140628 | TGCAAAATGAGTCTACAAAGCAATAAA | 58.859 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2187 | 2295 | 7.656412 | TGCAAAATGAGTCTACAAAGCAATAA | 58.344 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2188 | 2296 | 7.213216 | TGCAAAATGAGTCTACAAAGCAATA | 57.787 | 32.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2189 | 2297 | 6.088016 | TGCAAAATGAGTCTACAAAGCAAT | 57.912 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2190 | 2298 | 5.512753 | TGCAAAATGAGTCTACAAAGCAA | 57.487 | 34.783 | 0.00 | 0.00 | 0.00 | 3.91 |
2191 | 2299 | 5.710513 | ATGCAAAATGAGTCTACAAAGCA | 57.289 | 34.783 | 0.00 | 0.00 | 0.00 | 3.91 |
2192 | 2300 | 5.346822 | CCAATGCAAAATGAGTCTACAAAGC | 59.653 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2193 | 2301 | 5.865552 | CCCAATGCAAAATGAGTCTACAAAG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2194 | 2302 | 5.538053 | TCCCAATGCAAAATGAGTCTACAAA | 59.462 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2195 | 2303 | 5.076182 | TCCCAATGCAAAATGAGTCTACAA | 58.924 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
2196 | 2304 | 4.661222 | TCCCAATGCAAAATGAGTCTACA | 58.339 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
2197 | 2305 | 5.643379 | TTCCCAATGCAAAATGAGTCTAC | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
2198 | 2306 | 4.158394 | GCTTCCCAATGCAAAATGAGTCTA | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2199 | 2307 | 3.056322 | GCTTCCCAATGCAAAATGAGTCT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
2200 | 2308 | 3.256558 | GCTTCCCAATGCAAAATGAGTC | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
2201 | 2309 | 2.353011 | CGCTTCCCAATGCAAAATGAGT | 60.353 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2202 | 2310 | 2.264813 | CGCTTCCCAATGCAAAATGAG | 58.735 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
2203 | 2311 | 1.672441 | GCGCTTCCCAATGCAAAATGA | 60.672 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2204 | 2312 | 0.722848 | GCGCTTCCCAATGCAAAATG | 59.277 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2205 | 2313 | 0.609662 | AGCGCTTCCCAATGCAAAAT | 59.390 | 45.000 | 2.64 | 0.00 | 0.00 | 1.82 |
2206 | 2314 | 1.252175 | TAGCGCTTCCCAATGCAAAA | 58.748 | 45.000 | 18.68 | 0.00 | 0.00 | 2.44 |
2207 | 2315 | 1.134753 | CATAGCGCTTCCCAATGCAAA | 59.865 | 47.619 | 18.68 | 0.00 | 0.00 | 3.68 |
2208 | 2316 | 0.740149 | CATAGCGCTTCCCAATGCAA | 59.260 | 50.000 | 18.68 | 0.00 | 0.00 | 4.08 |
2209 | 2317 | 0.394216 | ACATAGCGCTTCCCAATGCA | 60.394 | 50.000 | 18.68 | 0.00 | 0.00 | 3.96 |
2210 | 2318 | 0.029834 | CACATAGCGCTTCCCAATGC | 59.970 | 55.000 | 18.68 | 0.00 | 0.00 | 3.56 |
2211 | 2319 | 1.667236 | TCACATAGCGCTTCCCAATG | 58.333 | 50.000 | 18.68 | 15.83 | 0.00 | 2.82 |
2212 | 2320 | 2.224606 | CATCACATAGCGCTTCCCAAT | 58.775 | 47.619 | 18.68 | 0.00 | 0.00 | 3.16 |
2213 | 2321 | 1.667236 | CATCACATAGCGCTTCCCAA | 58.333 | 50.000 | 18.68 | 0.00 | 0.00 | 4.12 |
2214 | 2322 | 0.179048 | CCATCACATAGCGCTTCCCA | 60.179 | 55.000 | 18.68 | 0.00 | 0.00 | 4.37 |
2215 | 2323 | 0.179045 | ACCATCACATAGCGCTTCCC | 60.179 | 55.000 | 18.68 | 0.00 | 0.00 | 3.97 |
2216 | 2324 | 2.526304 | TACCATCACATAGCGCTTCC | 57.474 | 50.000 | 18.68 | 0.00 | 0.00 | 3.46 |
2217 | 2325 | 3.194861 | TGTTACCATCACATAGCGCTTC | 58.805 | 45.455 | 18.68 | 0.00 | 0.00 | 3.86 |
2218 | 2326 | 3.260475 | TGTTACCATCACATAGCGCTT | 57.740 | 42.857 | 18.68 | 0.00 | 0.00 | 4.68 |
2219 | 2327 | 2.979814 | TGTTACCATCACATAGCGCT | 57.020 | 45.000 | 17.26 | 17.26 | 0.00 | 5.92 |
2220 | 2328 | 5.862924 | AATATGTTACCATCACATAGCGC | 57.137 | 39.130 | 0.00 | 0.00 | 39.83 | 5.92 |
2221 | 2329 | 8.479313 | ACATAATATGTTACCATCACATAGCG | 57.521 | 34.615 | 0.00 | 0.00 | 41.63 | 4.26 |
2240 | 2348 | 9.153479 | AGAGAGAGGCAAATAGAGTAACATAAT | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2241 | 2349 | 8.540507 | AGAGAGAGGCAAATAGAGTAACATAA | 57.459 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
2242 | 2350 | 8.540507 | AAGAGAGAGGCAAATAGAGTAACATA | 57.459 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
2243 | 2351 | 7.124901 | TGAAGAGAGAGGCAAATAGAGTAACAT | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
2244 | 2352 | 6.437477 | TGAAGAGAGAGGCAAATAGAGTAACA | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
2245 | 2353 | 6.868622 | TGAAGAGAGAGGCAAATAGAGTAAC | 58.131 | 40.000 | 0.00 | 0.00 | 0.00 | 2.50 |
2246 | 2354 | 7.667575 | ATGAAGAGAGAGGCAAATAGAGTAA | 57.332 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2247 | 2355 | 7.667575 | AATGAAGAGAGAGGCAAATAGAGTA | 57.332 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2248 | 2356 | 6.558488 | AATGAAGAGAGAGGCAAATAGAGT | 57.442 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
2249 | 2357 | 8.203485 | AGTTAATGAAGAGAGAGGCAAATAGAG | 58.797 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2250 | 2358 | 8.083828 | AGTTAATGAAGAGAGAGGCAAATAGA | 57.916 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2251 | 2359 | 9.823647 | TTAGTTAATGAAGAGAGAGGCAAATAG | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2253 | 2361 | 9.692325 | AATTAGTTAATGAAGAGAGAGGCAAAT | 57.308 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2254 | 2362 | 8.950210 | CAATTAGTTAATGAAGAGAGAGGCAAA | 58.050 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2255 | 2363 | 7.066284 | GCAATTAGTTAATGAAGAGAGAGGCAA | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 4.52 |
2256 | 2364 | 6.540189 | GCAATTAGTTAATGAAGAGAGAGGCA | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
2257 | 2365 | 6.017523 | GGCAATTAGTTAATGAAGAGAGAGGC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 4.70 |
2258 | 2366 | 7.011857 | GTGGCAATTAGTTAATGAAGAGAGAGG | 59.988 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
2259 | 2367 | 7.011857 | GGTGGCAATTAGTTAATGAAGAGAGAG | 59.988 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
2260 | 2368 | 6.823689 | GGTGGCAATTAGTTAATGAAGAGAGA | 59.176 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
2261 | 2369 | 6.825721 | AGGTGGCAATTAGTTAATGAAGAGAG | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
2262 | 2370 | 6.721318 | AGGTGGCAATTAGTTAATGAAGAGA | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2263 | 2371 | 6.599244 | TGAGGTGGCAATTAGTTAATGAAGAG | 59.401 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
2264 | 2372 | 6.480763 | TGAGGTGGCAATTAGTTAATGAAGA | 58.519 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2265 | 2373 | 6.757897 | TGAGGTGGCAATTAGTTAATGAAG | 57.242 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2266 | 2374 | 6.889177 | TGATGAGGTGGCAATTAGTTAATGAA | 59.111 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2267 | 2375 | 6.318648 | GTGATGAGGTGGCAATTAGTTAATGA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2268 | 2376 | 6.319658 | AGTGATGAGGTGGCAATTAGTTAATG | 59.680 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2269 | 2377 | 6.426587 | AGTGATGAGGTGGCAATTAGTTAAT | 58.573 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2270 | 2378 | 5.815581 | AGTGATGAGGTGGCAATTAGTTAA | 58.184 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
2271 | 2379 | 5.435686 | AGTGATGAGGTGGCAATTAGTTA | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2272 | 2380 | 4.307032 | AGTGATGAGGTGGCAATTAGTT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2273 | 2381 | 4.307032 | AAGTGATGAGGTGGCAATTAGT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2274 | 2382 | 5.404946 | CAAAAGTGATGAGGTGGCAATTAG | 58.595 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
2275 | 2383 | 4.321899 | GCAAAAGTGATGAGGTGGCAATTA | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2276 | 2384 | 3.555586 | GCAAAAGTGATGAGGTGGCAATT | 60.556 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2277 | 2385 | 2.028748 | GCAAAAGTGATGAGGTGGCAAT | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
2278 | 2386 | 1.340889 | GCAAAAGTGATGAGGTGGCAA | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
2279 | 2387 | 0.961019 | GCAAAAGTGATGAGGTGGCA | 59.039 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2280 | 2388 | 1.251251 | AGCAAAAGTGATGAGGTGGC | 58.749 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2281 | 2389 | 2.624838 | ACAAGCAAAAGTGATGAGGTGG | 59.375 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
2282 | 2390 | 3.067180 | ACACAAGCAAAAGTGATGAGGTG | 59.933 | 43.478 | 0.00 | 0.00 | 39.03 | 4.00 |
2283 | 2391 | 3.067180 | CACACAAGCAAAAGTGATGAGGT | 59.933 | 43.478 | 0.00 | 0.00 | 39.03 | 3.85 |
2284 | 2392 | 3.551454 | CCACACAAGCAAAAGTGATGAGG | 60.551 | 47.826 | 0.00 | 0.00 | 39.03 | 3.86 |
2285 | 2393 | 3.635331 | CCACACAAGCAAAAGTGATGAG | 58.365 | 45.455 | 0.00 | 0.00 | 39.03 | 2.90 |
2286 | 2394 | 2.223782 | GCCACACAAGCAAAAGTGATGA | 60.224 | 45.455 | 0.00 | 0.00 | 39.03 | 2.92 |
2287 | 2395 | 2.129607 | GCCACACAAGCAAAAGTGATG | 58.870 | 47.619 | 0.00 | 0.00 | 39.03 | 3.07 |
2288 | 2396 | 1.755959 | TGCCACACAAGCAAAAGTGAT | 59.244 | 42.857 | 0.00 | 0.00 | 37.28 | 3.06 |
2289 | 2397 | 1.180907 | TGCCACACAAGCAAAAGTGA | 58.819 | 45.000 | 0.00 | 0.00 | 37.28 | 3.41 |
2290 | 2398 | 2.129607 | GATGCCACACAAGCAAAAGTG | 58.870 | 47.619 | 0.00 | 0.00 | 44.83 | 3.16 |
2291 | 2399 | 2.034124 | AGATGCCACACAAGCAAAAGT | 58.966 | 42.857 | 0.00 | 0.00 | 44.83 | 2.66 |
2292 | 2400 | 2.806608 | AGATGCCACACAAGCAAAAG | 57.193 | 45.000 | 0.00 | 0.00 | 44.83 | 2.27 |
2293 | 2401 | 3.636300 | ACTTAGATGCCACACAAGCAAAA | 59.364 | 39.130 | 0.00 | 0.00 | 44.83 | 2.44 |
2294 | 2402 | 3.221771 | ACTTAGATGCCACACAAGCAAA | 58.778 | 40.909 | 0.00 | 0.00 | 44.83 | 3.68 |
2295 | 2403 | 2.862541 | ACTTAGATGCCACACAAGCAA | 58.137 | 42.857 | 0.00 | 0.00 | 44.83 | 3.91 |
2296 | 2404 | 2.566833 | ACTTAGATGCCACACAAGCA | 57.433 | 45.000 | 0.00 | 0.00 | 45.94 | 3.91 |
2297 | 2405 | 4.003648 | AGTAACTTAGATGCCACACAAGC | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
2298 | 2406 | 5.581085 | GGTAGTAACTTAGATGCCACACAAG | 59.419 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2299 | 2407 | 5.247564 | AGGTAGTAACTTAGATGCCACACAA | 59.752 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2300 | 2408 | 4.775780 | AGGTAGTAACTTAGATGCCACACA | 59.224 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
2301 | 2409 | 5.340439 | AGGTAGTAACTTAGATGCCACAC | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
2302 | 2410 | 6.610020 | ACATAGGTAGTAACTTAGATGCCACA | 59.390 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
2303 | 2411 | 7.052142 | ACATAGGTAGTAACTTAGATGCCAC | 57.948 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2304 | 2412 | 7.670605 | AACATAGGTAGTAACTTAGATGCCA | 57.329 | 36.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2305 | 2413 | 8.858094 | AGTAACATAGGTAGTAACTTAGATGCC | 58.142 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
2306 | 2414 | 9.896263 | GAGTAACATAGGTAGTAACTTAGATGC | 57.104 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
2308 | 2416 | 9.585369 | GGGAGTAACATAGGTAGTAACTTAGAT | 57.415 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2309 | 2417 | 8.560039 | TGGGAGTAACATAGGTAGTAACTTAGA | 58.440 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2310 | 2418 | 8.628280 | GTGGGAGTAACATAGGTAGTAACTTAG | 58.372 | 40.741 | 0.00 | 0.00 | 0.00 | 2.18 |
2311 | 2419 | 8.339247 | AGTGGGAGTAACATAGGTAGTAACTTA | 58.661 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2312 | 2420 | 7.187676 | AGTGGGAGTAACATAGGTAGTAACTT | 58.812 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2313 | 2421 | 6.739664 | AGTGGGAGTAACATAGGTAGTAACT | 58.260 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2314 | 2422 | 8.574737 | CATAGTGGGAGTAACATAGGTAGTAAC | 58.425 | 40.741 | 0.00 | 0.00 | 0.00 | 2.50 |
2315 | 2423 | 8.505246 | TCATAGTGGGAGTAACATAGGTAGTAA | 58.495 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2316 | 2424 | 7.941238 | GTCATAGTGGGAGTAACATAGGTAGTA | 59.059 | 40.741 | 0.00 | 0.00 | 0.00 | 1.82 |
2317 | 2425 | 6.776603 | GTCATAGTGGGAGTAACATAGGTAGT | 59.223 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
2318 | 2426 | 6.208994 | GGTCATAGTGGGAGTAACATAGGTAG | 59.791 | 46.154 | 0.00 | 0.00 | 0.00 | 3.18 |
2319 | 2427 | 6.073314 | GGTCATAGTGGGAGTAACATAGGTA | 58.927 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2320 | 2428 | 4.900054 | GGTCATAGTGGGAGTAACATAGGT | 59.100 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
2321 | 2429 | 4.899457 | TGGTCATAGTGGGAGTAACATAGG | 59.101 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
2322 | 2430 | 5.509840 | GCTGGTCATAGTGGGAGTAACATAG | 60.510 | 48.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2323 | 2431 | 4.344102 | GCTGGTCATAGTGGGAGTAACATA | 59.656 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
2324 | 2432 | 3.134804 | GCTGGTCATAGTGGGAGTAACAT | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
2325 | 2433 | 2.500098 | GCTGGTCATAGTGGGAGTAACA | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2326 | 2434 | 2.158943 | GGCTGGTCATAGTGGGAGTAAC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.50 |
2327 | 2435 | 2.116238 | GGCTGGTCATAGTGGGAGTAA | 58.884 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2328 | 2436 | 1.291033 | AGGCTGGTCATAGTGGGAGTA | 59.709 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
2329 | 2437 | 0.043334 | AGGCTGGTCATAGTGGGAGT | 59.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2330 | 2438 | 0.467384 | CAGGCTGGTCATAGTGGGAG | 59.533 | 60.000 | 6.61 | 0.00 | 0.00 | 4.30 |
2331 | 2439 | 0.042581 | TCAGGCTGGTCATAGTGGGA | 59.957 | 55.000 | 15.73 | 0.00 | 0.00 | 4.37 |
2332 | 2440 | 1.135094 | ATCAGGCTGGTCATAGTGGG | 58.865 | 55.000 | 15.73 | 0.00 | 0.00 | 4.61 |
2333 | 2441 | 2.968574 | AGTATCAGGCTGGTCATAGTGG | 59.031 | 50.000 | 15.73 | 0.00 | 0.00 | 4.00 |
2334 | 2442 | 4.830046 | AGTAGTATCAGGCTGGTCATAGTG | 59.170 | 45.833 | 15.73 | 0.00 | 0.00 | 2.74 |
2335 | 2443 | 5.068215 | AGTAGTATCAGGCTGGTCATAGT | 57.932 | 43.478 | 15.73 | 10.48 | 0.00 | 2.12 |
2336 | 2444 | 5.124776 | GCTAGTAGTATCAGGCTGGTCATAG | 59.875 | 48.000 | 15.73 | 7.35 | 0.00 | 2.23 |
2337 | 2445 | 5.010933 | GCTAGTAGTATCAGGCTGGTCATA | 58.989 | 45.833 | 15.73 | 2.30 | 0.00 | 2.15 |
2338 | 2446 | 3.829601 | GCTAGTAGTATCAGGCTGGTCAT | 59.170 | 47.826 | 15.73 | 3.37 | 0.00 | 3.06 |
2339 | 2447 | 3.117474 | AGCTAGTAGTATCAGGCTGGTCA | 60.117 | 47.826 | 15.73 | 0.00 | 0.00 | 4.02 |
2340 | 2448 | 3.492337 | AGCTAGTAGTATCAGGCTGGTC | 58.508 | 50.000 | 15.73 | 5.58 | 0.00 | 4.02 |
2341 | 2449 | 3.603965 | AGCTAGTAGTATCAGGCTGGT | 57.396 | 47.619 | 15.73 | 10.75 | 0.00 | 4.00 |
2342 | 2450 | 3.442273 | GCTAGCTAGTAGTATCAGGCTGG | 59.558 | 52.174 | 21.62 | 0.00 | 0.00 | 4.85 |
2343 | 2451 | 4.155826 | CAGCTAGCTAGTAGTATCAGGCTG | 59.844 | 50.000 | 18.86 | 14.72 | 37.65 | 4.85 |
2344 | 2452 | 4.331968 | CAGCTAGCTAGTAGTATCAGGCT | 58.668 | 47.826 | 18.86 | 6.79 | 0.00 | 4.58 |
2345 | 2453 | 3.119637 | GCAGCTAGCTAGTAGTATCAGGC | 60.120 | 52.174 | 18.86 | 8.24 | 41.15 | 4.85 |
2346 | 2454 | 4.695217 | GCAGCTAGCTAGTAGTATCAGG | 57.305 | 50.000 | 18.86 | 1.09 | 41.15 | 3.86 |
2385 | 2493 | 2.616960 | TGTGTCGCCAAGCTACTAATG | 58.383 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
2419 | 2527 | 4.906537 | AACCACCAACCACCGGCC | 62.907 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
2456 | 2564 | 3.520290 | ATCGACCTAATTTCGTGAGCA | 57.480 | 42.857 | 0.00 | 0.00 | 37.73 | 4.26 |
2477 | 2585 | 2.163010 | GAGTATGTTCTCGTGGTCGGAA | 59.837 | 50.000 | 0.00 | 0.00 | 37.69 | 4.30 |
2483 | 2591 | 1.478510 | AGCAGGAGTATGTTCTCGTGG | 59.521 | 52.381 | 14.91 | 2.03 | 44.98 | 4.94 |
2515 | 2627 | 6.886459 | AGCCTGTCAGTATTAATTGAACATGT | 59.114 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.