>input_sequence_75695
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---------------------------------------------------A-TGGCCTCCCCCTCCCCTCCGCCGCCGC
---CCGCCGGCGACCAGCGGCCCCACCACCCCCTCCTCGCCGCGGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTC
CCGCGCCCACTCCTGCAGCTGCTCCTCTCCCCCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGG
CTCCCCGCCACCTGCCGCGACCCTAGCTCCTCCTCCTTCCCCGCCGCAGGAGAGAGCCCAGGAGGTCGCCCCGCCTCCGC
CTCCGCCTCCCCCGCCGCCGCCGCCGCCGCCGGTGAAGCCCCAGAGCGTGTTCCTGGAGCCCGAGTTCGCGTCGTGGGCG
CCCAAGGGCCGCGCCCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTGCCCTGGAC
GTCGGACTCCGACTCGGACAGCTGCAGCGGCAGCGACGACTACGACGACGGCGGCAGCGGCGGCGGGGAGGAGTACGGGA
TGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCGAGCTGCCGGTGA------------------
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>chr2A_1_TraesCS2A01G205200
TACAGTACGACCTGACCTGAGCCTCCTGGCACCGTACCGTAC------AGCGAGTCCCCATGGCCGGCCTGTAGACGTG-
-----------CCCGGAAGGATGTGCCCATATCTGGGCCACCCCTGCTCCTCCCCCGTTGGCAAGACTTCAAGTGGAAGA
CAAGTTGCCCCGCGGCGCAAACAA----AAGAAAAATGGCGCGCCCCGACACGTTAACATGCAGGGAAGATGCTTGTGAC
-CTGCGACTGCCCGACGGCCGACGGGTGACGGATACGGGAGGAT-------------CTCCATCGAAAAGGCCACGG---
------------------AGGCCCGTCAGCTTTCCTCCGTTGGTTCCGGCAGCGGCCGGTGGAG----CTCTCTCTGCCC
GTCGGGGGATTTGCTTCCCGTTTCGTCCCGTCCGGTTGCCTTTTTCTTCCCGTTTCGTCTCGTCCGGTTGCCTTTTCCTC
CCGTTTCGTGTGCAGTAATGCAGTGCAGGTGGTGGCTCTGTGCCTTTGCGTGCATGCTGCAGCCTTCCGCTCGCCCGAGC
CGAGCCATCTGCATTTGCTGCCGGCCGGTGCCCCGATTCGTGTGGCGCCGTGCTGCCGCCCATCATGTTTTTTACTGCTG
GCCCAGTCGCACGCCGTTTGACCGGACGCTCCTTTTCCTGCCCGTGGTCTTTGCACAATGCAGCAGATACTGGTCAATTT
CCCCAGTACTGTCCCAACATGTGAACATGGACCCACATGTCATCCCTACACTAATCTC---------------GCAGTTC
AAGTTA--ACACACTCTACTATAGTACCATTAATTGGACA-GTAGGACAACGAACGAACAATCAG-TGAAGCGTAAAACG
G-TTTGAACACAACATTCTACCGTCCTTCCGTTCCGTGCGTACCTGCAGAAAAAAGATCGGAGTTTTGATTTCGCTGGCT
GGAACAAGAATAAAACCGGAAGCTC-----TCGCTCGTCTCGTTTGCTTGTCGCTTTAAAAAGAGAGAAACCGACTTGGC
GGTGCGTGGGTT-----GGCTTTAACCACTACTACACTCCTCCCGCCTTAAA-TGGCCTCCCCCTCCCCTCCGCCGCCGC
---CCGCCGGCGACCAGCGGCCCCACCACCCCCTCCTCGCCGCGGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTC
CCGCGCCCACTCCTGCAGCTGCTCCTCTCCCCCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGG
CTCCCCGCCACCTGCCGCGACCCTAGCTCCTCCTCCTTCCCCGCCGCAGGAGAGAGCCCAGGAGGTCGCCCCGCCTCCGC
CTCCGCCTCCCCCGCCGCCGCCGCCGCCGCCGGTGAAGCCCCAGAGCGTGTTCCTGGAGCCCGAGTTCGCGTCGTGGGCG
CCCAAGGGCCGCGCCCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTGCCCTGGAC
GTCGGACTCCGACTCGGACAGCTGCAGCGGCAGCGACGACTACGACGACGGCGGCAGCGGCGGCGGGGAGGAGTACGGGA
TGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCGAGCTGCCGGTGATGGATTC-CCCCGACATT
CCGACCGGTTTTCC--------TTCTCTTGCGTTGGCTTTGACAAAAACCAAATACATTTTGCTGATTCGGCGTGTGAAT
TCGAGTGCCGTTCTTTATTCTCTTCAT---TACTTAGATGCTTCCCTGCAATGTACATAGGCTGGTCACTGGTGAGCTGA
GAAAGATACTACCGAGTGAGGAAGGCTTGCTAATTTTTGGTTCATCTGAGATGATGGCGAGTTTAGTTTGATCCTGCTAC
TACTTACTAGTTTTTGTGCCATGTTAATCACTTGTCACCTCAAGGAAGGAATCAACTTGTGATGCTTGCATTGGTCTTTC
TTTATCCAAGCATCTTGAGCTAGTGTCTACTATGATTAGCACTACAAGATCGTCCGGTTTTTGTTCTTGTTCTGACAAGA
TTTGCAATCATGCACCACATTGCGCGGCTGGCGTTTTACTATATTCGAGTGCAGATTGTGCTTGAGTTTCATGTTACGAT
AGATAGCTTGGTGATACACTGAGGCTGGTCATAGTGGAGAGTAACTTAGACTAGTAACATGTATATGTTACTAGTCTATA
TTACTACCTTCATAGTGGGTAGTATCATATATGTGGTAACATAGATGTCTTTATTTATTGCTTTGTAGACTCATTTTGCA
TTGGGAAGCGCTATGTGATGGTAACATATTATGTTACTCTATTTGCCTCTCTCTTCATTAACTAATTGCCACCTCATCAC
TTTTGCTTGTGTGGCATCTAAGTTACTACCTATGTTACTCCCACTATGACCAGCCTGATACTACTAGCTAGCTGCTTGGA
TCTGGAGAAAATCATTAGTAGCTTGGCGACACATGTGTAAAGATGGGGCCGGTGGTTGGTGGTTGGGATGGATCCGTTAA
GTTTGCTCACGAAATTAGGTCGATTTCCGACCACGAGAACATACTCCTGCTGTGCCATC----TAAACATGTTCAATTAA
TACTGACAGGCTGCTTTGCCTCCCTTTAGAAATACATA
>chr2D_3
--CAGTACGACCTGACCTGAGCATCCTGGCACCGTACCGTAC------AGCGAGTCCCCGTGGCCGGCCTGTAGACGTGT
AGTTGGCCGCACCCGGAAGGATGTGCCCATATCTGGGCCACCCCTGCTCCTCCCCCGTTGGCAAGACTTCAAGTGGAAGC
CAAGTTGCCCCGCTGCGCAAACAG----AAAAAAA--GGCTCACCCCGACACGTTAACATGCAGGGAAGATGCTTGTGAC
-CTGCGACTACCCGACGGGCGACGGGTGACGGATACGGGAGGATCTGGCGCTGGCGGCTCCATCGAAAAGGGCACGAGGC
ATCCGGGCAAGGGCACGCAGGCCCGTCAGCTTTCCTCCGTTGGTTTCGGCAGCGGCCGGTGGAG----CTCTCTCTGCCC
GTCGGGGGATTTGCTTCCCGTTTCGTCTCGTCCGGTTGCCTTTT-CTTCCCGTTTCGTCTGGTCCGGTTGCCTTTTCTTC
CCGTTTCGTGTGCAGT---GCAGTGCAGGTGGCAGCCCTGCGCCTTTGCGTGCATGCTGCAGCCTTCCGCTCGCCCGAGC
CGAGTCATTTGCATTTTCTGCCGGCCGGTGCCCCGATTCGTGTGGCTCCGTGCTGCCGCCCATCATGTTTTTTACTGCTG
ACCCAGTCGCACGCCGTTTGACCGGACGCTCCTTTTCCTGCCCGTGGTCTTTGCACAATGCAGATACTACTGGTCAATTT
CCCCAGCACTGTCCCAACATGTGGACGTAGACCCACATGTCATCCCTTCATTAGTTGCTGAAGAGGGTGTTGAGCATTTC
AAGTTA--AACACATTC-------TACCATTAATTGGACA-GGAGGACAATGGATGAACAATCAGGTGAAACGTACG-CG
G-TTTTAACACAACATTCTACCGTCCTTCCGG-----GCGTACCTGCAAAAAAAAGATCGGAGTTTTGATTTCGCTGTCT
GGAACAAGAATAAAACCGGAAGCGC-----TCGCTCGTCTCGTTTGCTTGTCGCTTTAAAAAGAGAGAAACCGACTTGGC
GGTGAGTGGCTCTGCTCGGCTTTAACCACTA---CACTCCTCCCGCCTTAAA-TGGGCTCCCCCTCCCCTCCGCCGCCGC
---CCGCCGGCGACCAACGGCCCCACCACCCCCTCCTCGCCGCAGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTC
CCTCGGCCGCTCCTGCAGCTGCTCCTCACCCCCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGG
CTCCCCGCCACCTGCCGCGACCCTTCCTCCTCTTCCTCCTCCGCCGCAGGAGAGAGCCCCGGAGGTCGCTCCGCCTCCGC
CACCGCCTCCC---------CCGCCGCCGCCGGCGAAGCCCCAGAGCGTGTTCCTGGAGCCCGAGTTCGCGTCGTGGGCG
CCCAAAGGCCGCGTCCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTGCCCTGGAC
GTCGGACTCCGACTCGGACAGCTGCAGCGGCAGCGACGACTACGACGGCGGCGGCGGCGGCGGCGGGGAGGAGTACGGGA
TGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCGAGCTGCCGGTGATGGATTC-CCCCGACATT
CCGACCGGTTTTCC--------TTCTCTTGCGTTGGCTTTGACAAAAACAAAATACATTTTGCTGATTCGGCGTGTGAAT
TCGAGTGCCGTTCTTTATTCTCTTTATTACTACTTAGATG-----CTGCAATGTACATAGGCTGGTCACTGGTGAGCTGA
GAAAGATACTACCGAGTGAGGAAGGCTCGCTAATTTTTGGTTCATCTGAGATGATGGCGAGTTTAGTTTGATCCTACTAC
TACC-ACTAGTTTTTGTGCCATGTTAATCACTTGTCACCTCAAGGAAGGAATCAACTTGTGATGCTTGCATTGGTCTTTC
TTTATCCAAGCATCTTGAGCTAGTGTTTACTATGATTAGCACTACAAGATCGTCCGCTTTTTGTTCTTGTTCTGACAAGA
TT-GCAATCATTCACCACATTGCGCGGCTGGCGTTTTACTATATTCGAGCGCAGATTGTGCTTGAGTTTCATGTTAGTAC
-GATAGCTTGGTGATACACTGA----------------------------------------------------------
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----------------------------------------------------------TACTACTAGCTAGCTGCATGGA
TCTGGAGAAAATTATTAGTAGCTTGGCGACACATGTGTAAAGATCGTGCCGGTGGTTGGTGGTTGGGATGGATCCGTTAA
GTTGGCTCACGAAATTAGGTCGATCTCCGAGCACGAGAACATACTCCTGCTGTGCCATC----TAAGCATGTTCAATTAA
TACTGACAGGCTGCTTTGCTTCCCTTTCGAAATA----
>chr2B_3
--CAGTACTACCTGACCTGAGCCTCATGGCACCGTACCGTACAGGTACAGCGAGTCCCCAT----GGCCTGTAGACGTGC
AGTTGGCCGCACCCGGAAGGATCTGCCCATATCTGGGCCACCCCTGCTCCTCCCCCGTTGGCAAGACTTCAAGTGGAAGA
CAAGTTGCCCCGCGGCGCAAACAAGAGAAAAAAAA--GGCTCGCCCCGACACGTTAACATGCAGGGAAGATGCCTGCGAG
GCTGCGACTGCCCGACGGGTGACGGATACGGGATACGGGAGGATCTGGCG------GCTCCATCGAAAAGGGCACGAGGC
ATCCGGGCAAGGGCACGCAGGCCCGTCAGCTTTCCTCCGTTGGTTTCGGCAGCGGCCGGTGGAGCTATCTCTCTCTGCCC
GTCGGGG-ATTTGCTTCCCGTTTCGTCTCGTCCCGTTGCCTTTT-CTTCCCGTTTCGTCTGGTCCGGTTGCCTTTTCCTC
CCGTTTCGG-----GT---GCAGTGCAGGTGGCAGCTCTGTGCCTTTACGTGCATGCTGCAGCCTTCCGCTCGCCCGAGC
CGAGCCATTTGCATTTTCTGCCGGCCGGTGCCCCGATTCGTGTGGCTCCGTGCTGCCGCCCATCATGTTTTTTACTGCTG
ACCCAGTCGCACGCCGTTTGACCGGACGCTCCTTTTCCTGGCCGTGGT----------------AGATACCGGTCAATTT
CCCCAGTACTGTCCCAACATGTGGACGTGGACCCACATGTCATCCCTACATTAGTCGCTGAAGAGGGTCTTGAGCATTTC
AAGTTAGTAACACATTC-------TACCATTAATTGGACTTGGAGGACAACGGACGAACAATCAG-TGAAGCGTACG-CG
GTTTTTAACACAACATTCTACCGTCCTTCCGG-----GCGTACCTGCAAAAAAAGATTGGG-GTTTTGATTTCGCTGGCT
GGAACAAGAATAAAACCGGAAGCGCGTCCTTCGCTCGTCTCGTTTGCTTGTCGCTTTAAAAAGAGAAAAACCGACTTGGC
GGTGCGTGGCTT-----GGCTTTAACCACTC---CACTCCTCCCGCCTTAAAATGGCCTCCCCATCCCCTCCGCCGCCGC
CGGCCGCCGCCGACCAACGGCCCCACCACCCCCTCTTCGCCGCGGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTC
CCTCGGCCGCTCCTGCAGCTGCTCCTCTCCCCCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGG
CTCCCCGCCACCTGCCGCGACCCTTGCTCCTCCTCCTCCTCCGCTGCAGGAGAGAGCCCCGGAGGTCGCCCCGCCTCCGC
CTCCG---------------CCGCCGCCGCCGGCGAAGCCCCAGAGCGTGTTCCTGGAGCCGGAGTTCGCGTCGTGGGCG
CCCAAAGGCCGCGCTCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAAGAGATGGGCCTGCCCTGGAC
GTCGGACTCCGACTCGGACAGCTGCAGCGGCAGTGACGACTACGACGACGGCGGCGGCGG---CGGGGAAGAGTACGGGA
TGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCGAGGTGCCGGTGATGGATTTACCCCGACATT
CCGACCGGTTTTCCCCCTTTGCTTCTCTTGCGTTGGCTTTGACAAAAACAAAATACATTTTGCTGATCCGGCGTGTGAAT
TCGAGTGCCGTTCTTTATTCTCTTTATT---ACTTAGATG-----CTGCAATGTACATAGGCTGGTGACTGGTGAGACGA
GGAAGA---TACCGAGTGAGGAAGGCTTGCTAATTTTTGGTTCATCTGAGATGATGGCGAGTTTAGTTTGATCCTACTAC
TAC----TAGTTTTTGTGCCATGTTAATTACTTGTCACCTCAAGGAA----TCAACTTGTGATGCTTGCATTGGTCTTTC
TTTATCCAAGCATCTT-AGCTAGTGTTTACTATCATTAGTACTACAAGATCGTCCGCTTTTTGTTCTTGTTCCGAGAAGG
-TTGCAATCATGCACCACATTGCGCGGCTGGCGTTTTACTATATTCGAGTGCAGATCGTGCTTGAGTTCCATGT---TAC
-GATAGCTTGGTGATACACTGA----------------------------------------------------------
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----------------------------------------------------------T-CTACTAGCT-GCTGCTTGGA
TCTGGAGAAA---ATTAGTAGCTTGGCGACACATGTGTAAAGATCGTGCCGGTTGTTGGTGGTTGGAATGGATCCGTTAA
GTTGGTTCACGAAATTAGGTCGATCTCCGAGCACGAGAACATACTCCTGCTGTCTGTGCCATGTAAGCATGTTCAATTAA
TACTGACAGGCTGCTTTGCTTCCCTT------------
>SNPs
SS------------------------------------------------------------------------------
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------------------------------S----SS---S---------------------------------------
------------------S----------------------------------------------------S----S---
---------------------------------------------S----------------------------------
---------------------------S----------------S---------------S-------------------
----------------SSS-------------SS----------------------------------------------
--------S-------S-----------------------------S---------------------------------
S--------------------------------------------------------------S----------------
-----------------------S--S-----------------------S--S--S-------------------S---
---------SSSSS-SSSSSSSSS------------------S---------S----------------------SSS--
-----S-------------------------SSSSSS-----------S-------------------------------
-----------------------S--------------------------------------------------------
---------S---------------------SSS----------------------------------------------
----------------S---------------------------------------------------------------
--S--S--S-----------------------------------------------------------------------
------------------------S------------S-S-------------------S--------------------
-----------SSSSSSSSS-------------S----------------------------------------------
-----S--------------------------------------------------------------------------
-------------------------------------------------------S------------------------
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-------------------------------------------------S------------------------------
------------------------S---------------SSSSS-----------------------------------
---------------------------------------------------------------------------S----
---SS---------------------------------------------------------------------------
--------------------------S-----------------------------S-----------------------
----------------------------------------------------------------------------SS-S
S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
------------S-------------------------------S-S---------------------------------
---S--------------------S-----S-----------------------------------S-------------
-------------------S-------S------SSSS
>forward_498
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------------------------------------------------------------------------------TC
CCGTTTCGTGTGCAGTAA--------------------------------------------------------------
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>reverse_2318
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-----------------------------------------------------------------------------GCA
TTGGGAAGCGCTATGTG---------------------------------------------------------------
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