Multiple sequence alignment - TraesCS2A01G203400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G203400 chr2A 100.000 1319 0 0 907 2225 179303044 179304362 0.000000e+00 2436.0
1 TraesCS2A01G203400 chr2A 100.000 703 0 0 1 703 179302138 179302840 0.000000e+00 1299.0
2 TraesCS2A01G203400 chr2B 88.366 722 46 22 1 703 226705369 226706071 0.000000e+00 833.0
3 TraesCS2A01G203400 chr2B 86.099 669 41 22 1472 2110 226707015 226707661 0.000000e+00 673.0
4 TraesCS2A01G203400 chr2B 89.595 519 15 15 907 1393 226706171 226706682 6.750000e-175 623.0
5 TraesCS2A01G203400 chr2D 88.172 651 46 17 1469 2110 170606391 170605763 0.000000e+00 747.0
6 TraesCS2A01G203400 chr2D 93.093 333 10 2 907 1235 170607239 170606916 2.000000e-130 475.0
7 TraesCS2A01G203400 chr2D 95.053 283 9 4 422 703 170607615 170607337 7.290000e-120 440.0
8 TraesCS2A01G203400 chr2D 83.182 440 46 15 1 431 170608763 170608343 5.800000e-101 377.0
9 TraesCS2A01G203400 chr2D 87.342 158 14 3 271 425 170608313 170608159 2.270000e-40 176.0
10 TraesCS2A01G203400 chr7D 100.000 28 0 0 2170 2197 419034869 419034842 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G203400 chr2A 179302138 179304362 2224 False 1867.500000 2436 100.0000 1 2225 2 chr2A.!!$F1 2224
1 TraesCS2A01G203400 chr2B 226705369 226707661 2292 False 709.666667 833 88.0200 1 2110 3 chr2B.!!$F1 2109
2 TraesCS2A01G203400 chr2D 170605763 170608763 3000 True 443.000000 747 89.3684 1 2110 5 chr2D.!!$R1 2109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 1383 0.028955 AAATCCCTCCTCCTACCCCC 60.029 60.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 3308 0.102481 GGCTGAGAGCATGCCAAATG 59.898 55.0 15.66 3.58 44.75 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.667993 AGTTGAACAACACCCATGCG 59.332 50.000 17.85 0.00 43.47 4.73
20 21 0.318614 GTTGAACAACACCCATGCGG 60.319 55.000 12.01 0.00 40.84 5.69
73 76 2.837591 TCGATCTTTCTGGGTGGATTCA 59.162 45.455 0.00 0.00 0.00 2.57
74 77 3.118629 TCGATCTTTCTGGGTGGATTCAG 60.119 47.826 0.00 0.00 0.00 3.02
85 88 3.309296 GGTGGATTCAGGTCTAGGATCA 58.691 50.000 0.00 0.00 0.00 2.92
122 129 2.106131 TCACGCTGTTGCACGTCT 59.894 55.556 0.00 0.00 41.32 4.18
191 198 1.202348 CAATGGCGAAAGGTTTCCTCC 59.798 52.381 0.00 0.33 33.68 4.30
192 199 0.676782 ATGGCGAAAGGTTTCCTCCG 60.677 55.000 0.00 6.31 33.68 4.63
193 200 1.004200 GGCGAAAGGTTTCCTCCGA 60.004 57.895 12.24 0.00 33.68 4.55
198 205 2.353803 CGAAAGGTTTCCTCCGAGATGT 60.354 50.000 0.00 0.00 33.68 3.06
200 207 0.250513 AGGTTTCCTCCGAGATGTGC 59.749 55.000 0.00 0.00 0.00 4.57
207 214 1.657751 CTCCGAGATGTGCTGGACGA 61.658 60.000 0.00 0.00 0.00 4.20
208 215 1.215382 CCGAGATGTGCTGGACGAA 59.785 57.895 0.00 0.00 0.00 3.85
209 216 0.179100 CCGAGATGTGCTGGACGAAT 60.179 55.000 0.00 0.00 0.00 3.34
210 217 1.067060 CCGAGATGTGCTGGACGAATA 59.933 52.381 0.00 0.00 0.00 1.75
211 218 2.120232 CGAGATGTGCTGGACGAATAC 58.880 52.381 0.00 0.00 0.00 1.89
212 219 2.120232 GAGATGTGCTGGACGAATACG 58.880 52.381 0.00 0.00 45.75 3.06
213 220 1.749063 AGATGTGCTGGACGAATACGA 59.251 47.619 0.00 0.00 42.66 3.43
214 221 1.852895 GATGTGCTGGACGAATACGAC 59.147 52.381 0.00 0.00 42.66 4.34
215 222 0.885879 TGTGCTGGACGAATACGACT 59.114 50.000 0.00 0.00 42.66 4.18
216 223 2.086094 TGTGCTGGACGAATACGACTA 58.914 47.619 0.00 0.00 42.66 2.59
217 224 2.159476 TGTGCTGGACGAATACGACTAC 60.159 50.000 0.00 0.00 42.66 2.73
218 225 2.097142 GTGCTGGACGAATACGACTACT 59.903 50.000 0.00 0.00 42.66 2.57
219 226 2.096980 TGCTGGACGAATACGACTACTG 59.903 50.000 0.00 0.00 42.66 2.74
220 227 2.097142 GCTGGACGAATACGACTACTGT 59.903 50.000 0.00 0.00 42.66 3.55
221 228 3.427233 GCTGGACGAATACGACTACTGTT 60.427 47.826 0.00 0.00 42.66 3.16
222 229 4.201851 GCTGGACGAATACGACTACTGTTA 60.202 45.833 0.00 0.00 42.66 2.41
223 230 5.505324 GCTGGACGAATACGACTACTGTTAT 60.505 44.000 0.00 0.00 42.66 1.89
247 257 6.550938 ACTAGCCTGCTATATATTCATGCA 57.449 37.500 0.00 0.00 0.00 3.96
315 515 4.669197 CGTTAGGAAACATTCGCCTCAAAG 60.669 45.833 0.00 0.00 35.16 2.77
318 518 4.082125 AGGAAACATTCGCCTCAAAGAAT 58.918 39.130 0.00 0.00 37.55 2.40
320 520 4.859245 GGAAACATTCGCCTCAAAGAATTC 59.141 41.667 0.00 0.00 35.14 2.17
372 577 1.966901 TACGATCCACTTGGCGCCAT 61.967 55.000 33.25 15.11 34.44 4.40
385 590 1.370437 CGCCATGGATCTGGGAGAG 59.630 63.158 18.40 0.00 36.75 3.20
423 1176 1.296056 GCTCTGCGGCGAGGTTAAAA 61.296 55.000 12.98 0.00 0.00 1.52
465 1218 2.550639 GCCTGTTTTTGTCTACCCCGTA 60.551 50.000 0.00 0.00 0.00 4.02
468 1221 1.460743 GTTTTTGTCTACCCCGTACGC 59.539 52.381 10.49 0.00 0.00 4.42
479 1232 1.601903 CCCCGTACGCACGTATACTTA 59.398 52.381 10.49 0.00 46.96 2.24
564 1324 3.675619 CTAACCGCCACCTTCCCCG 62.676 68.421 0.00 0.00 0.00 5.73
623 1383 0.028955 AAATCCCTCCTCCTACCCCC 60.029 60.000 0.00 0.00 0.00 5.40
626 1386 2.615773 CCTCCTCCTACCCCCTCC 59.384 72.222 0.00 0.00 0.00 4.30
627 1387 2.615773 CTCCTCCTACCCCCTCCC 59.384 72.222 0.00 0.00 0.00 4.30
628 1388 3.040814 TCCTCCTACCCCCTCCCC 61.041 72.222 0.00 0.00 0.00 4.81
629 1389 3.043404 CCTCCTACCCCCTCCCCT 61.043 72.222 0.00 0.00 0.00 4.79
984 1764 3.339951 AAGGGGGAGGAGGAGGAGC 62.340 68.421 0.00 0.00 0.00 4.70
1213 1993 0.175073 CAAGTCCTACCGCCACTACC 59.825 60.000 0.00 0.00 0.00 3.18
1215 1995 3.142838 TCCTACCGCCACTACCGC 61.143 66.667 0.00 0.00 0.00 5.68
1325 2160 9.973450 TTTGCTCTGCTTATTAATTTGTGTTTA 57.027 25.926 0.00 0.00 0.00 2.01
1330 2165 7.753132 TCTGCTTATTAATTTGTGTTTAAGGCG 59.247 33.333 0.00 0.00 0.00 5.52
1362 2199 2.283145 AGCTTGGAGATTGTTGCACT 57.717 45.000 0.00 0.00 0.00 4.40
1377 2214 3.159213 TGCACTGGATGGATTCTTGTT 57.841 42.857 0.00 0.00 0.00 2.83
1378 2215 4.299586 TGCACTGGATGGATTCTTGTTA 57.700 40.909 0.00 0.00 0.00 2.41
1407 2296 6.691754 TGTACATATGTTATGCAAGGTTGG 57.308 37.500 14.77 0.00 0.00 3.77
1411 2300 9.062524 GTACATATGTTATGCAAGGTTGGATTA 57.937 33.333 14.77 0.00 39.95 1.75
1425 2314 7.569599 AGGTTGGATTACCTTCTCTTCTAAA 57.430 36.000 0.00 0.00 46.39 1.85
1427 2316 8.615705 AGGTTGGATTACCTTCTCTTCTAAATT 58.384 33.333 0.00 0.00 46.39 1.82
1428 2317 8.678199 GGTTGGATTACCTTCTCTTCTAAATTG 58.322 37.037 0.00 0.00 35.23 2.32
1429 2318 8.678199 GTTGGATTACCTTCTCTTCTAAATTGG 58.322 37.037 0.00 0.00 37.04 3.16
1430 2319 7.928873 TGGATTACCTTCTCTTCTAAATTGGT 58.071 34.615 0.00 0.00 37.04 3.67
1431 2320 9.053472 TGGATTACCTTCTCTTCTAAATTGGTA 57.947 33.333 0.00 0.00 37.04 3.25
1436 2325 7.797062 ACCTTCTCTTCTAAATTGGTATCTCC 58.203 38.462 0.00 0.00 0.00 3.71
1437 2326 6.926272 CCTTCTCTTCTAAATTGGTATCTCCG 59.074 42.308 0.00 0.00 39.52 4.63
1438 2327 7.418025 CCTTCTCTTCTAAATTGGTATCTCCGT 60.418 40.741 0.00 0.00 39.52 4.69
1439 2328 7.040473 TCTCTTCTAAATTGGTATCTCCGTC 57.960 40.000 0.00 0.00 39.52 4.79
1440 2329 6.040616 TCTCTTCTAAATTGGTATCTCCGTCC 59.959 42.308 0.00 0.00 39.52 4.79
1441 2330 4.579454 TCTAAATTGGTATCTCCGTCCG 57.421 45.455 0.00 0.00 39.52 4.79
1442 2331 3.956199 TCTAAATTGGTATCTCCGTCCGT 59.044 43.478 0.00 0.00 39.52 4.69
1443 2332 2.596904 AATTGGTATCTCCGTCCGTG 57.403 50.000 0.00 0.00 39.52 4.94
1444 2333 0.750850 ATTGGTATCTCCGTCCGTGG 59.249 55.000 0.00 0.00 39.52 4.94
1460 2568 2.550208 CCGTGGAGGCCAATAGGATTAC 60.550 54.545 5.01 0.00 34.18 1.89
1462 2570 3.576982 CGTGGAGGCCAATAGGATTACTA 59.423 47.826 5.01 0.00 34.18 1.82
1463 2571 4.223032 CGTGGAGGCCAATAGGATTACTAT 59.777 45.833 5.01 0.00 44.26 2.12
1499 2607 2.825223 TCTCATGCAAGAGAGAAGGGA 58.175 47.619 17.33 0.00 39.62 4.20
1507 2616 3.864160 GCAAGAGAGAAGGGAGAAGTGTG 60.864 52.174 0.00 0.00 0.00 3.82
1510 2619 2.495669 GAGAGAAGGGAGAAGTGTGAGG 59.504 54.545 0.00 0.00 0.00 3.86
1514 2623 2.938428 AGGGAGAAGTGTGAGGATCT 57.062 50.000 0.00 0.00 34.92 2.75
1527 2636 5.529060 GTGTGAGGATCTTTGTTATCCATCC 59.471 44.000 5.01 0.00 44.62 3.51
1549 2658 8.816894 CATCCCTAATTAGCTCCTCTTGTAATA 58.183 37.037 6.99 0.00 0.00 0.98
1558 2667 7.768807 AGCTCCTCTTGTAATAGTAGTATGG 57.231 40.000 0.00 0.00 0.00 2.74
1559 2668 7.527796 AGCTCCTCTTGTAATAGTAGTATGGA 58.472 38.462 0.00 0.00 0.00 3.41
1607 2725 3.196007 ACGGCATTAACGTGTGATTTG 57.804 42.857 0.00 0.00 43.78 2.32
1625 2743 6.638468 GTGATTTGATTCCTCACACTTTTCAC 59.362 38.462 0.00 0.00 39.24 3.18
1629 2747 4.821805 TGATTCCTCACACTTTTCACCTTC 59.178 41.667 0.00 0.00 0.00 3.46
1630 2748 4.503714 TTCCTCACACTTTTCACCTTCT 57.496 40.909 0.00 0.00 0.00 2.85
1632 2750 4.451900 TCCTCACACTTTTCACCTTCTTC 58.548 43.478 0.00 0.00 0.00 2.87
1637 2755 7.227049 TCACACTTTTCACCTTCTTCTTTTT 57.773 32.000 0.00 0.00 0.00 1.94
1678 2796 2.089980 CTTTCATCTGACAAGGCCCTG 58.910 52.381 0.00 0.00 0.00 4.45
1691 2809 0.674895 GGCCCTGTTGTCTGCTACTG 60.675 60.000 0.00 0.00 0.00 2.74
1725 2849 4.210724 TCGAAATAAACAAGGACGGGAT 57.789 40.909 0.00 0.00 0.00 3.85
1726 2850 3.936453 TCGAAATAAACAAGGACGGGATG 59.064 43.478 0.00 0.00 0.00 3.51
1736 2860 3.713826 AGGACGGGATGTATTTGTGTT 57.286 42.857 0.00 0.00 0.00 3.32
1738 2862 3.078837 GGACGGGATGTATTTGTGTTGT 58.921 45.455 0.00 0.00 0.00 3.32
1746 2870 5.461737 GGATGTATTTGTGTTGTGTTGTTGG 59.538 40.000 0.00 0.00 0.00 3.77
1749 2873 6.556212 TGTATTTGTGTTGTGTTGTTGGTAG 58.444 36.000 0.00 0.00 0.00 3.18
1751 2875 5.906113 TTTGTGTTGTGTTGTTGGTAGAT 57.094 34.783 0.00 0.00 0.00 1.98
1755 2879 6.692486 TGTGTTGTGTTGTTGGTAGATTTTT 58.308 32.000 0.00 0.00 0.00 1.94
1774 2898 2.435234 CCCGTCAATTCCCGCGAA 60.435 61.111 8.23 0.00 0.00 4.70
1775 2899 2.036006 CCCGTCAATTCCCGCGAAA 61.036 57.895 8.23 1.06 0.00 3.46
1776 2900 1.579084 CCCGTCAATTCCCGCGAAAA 61.579 55.000 8.23 0.61 0.00 2.29
1777 2901 0.238817 CCGTCAATTCCCGCGAAAAA 59.761 50.000 8.23 0.00 0.00 1.94
1819 2943 3.309582 CGCTGGAGGGGAAAGCTA 58.690 61.111 0.00 0.00 34.72 3.32
1820 2944 1.153349 CGCTGGAGGGGAAAGCTAC 60.153 63.158 0.00 0.00 34.72 3.58
1821 2945 1.617947 CGCTGGAGGGGAAAGCTACT 61.618 60.000 0.00 0.00 34.72 2.57
1822 2946 0.107459 GCTGGAGGGGAAAGCTACTG 60.107 60.000 0.00 0.00 34.05 2.74
1823 2947 1.280457 CTGGAGGGGAAAGCTACTGT 58.720 55.000 0.00 0.00 0.00 3.55
1910 3041 3.617288 GCATGGCATACGAGGACATATGA 60.617 47.826 10.38 0.00 31.54 2.15
1993 3129 1.368641 GATGTACAATGTCTGCGCCA 58.631 50.000 4.18 0.00 0.00 5.69
1994 3130 1.328680 GATGTACAATGTCTGCGCCAG 59.671 52.381 4.18 2.24 0.00 4.85
1995 3131 1.298157 TGTACAATGTCTGCGCCAGC 61.298 55.000 4.18 0.00 45.41 4.85
1996 3132 1.021390 GTACAATGTCTGCGCCAGCT 61.021 55.000 4.18 0.00 45.42 4.24
2125 3266 2.881074 GCAATCAGCGAGTACTCTTCA 58.119 47.619 20.34 2.55 0.00 3.02
2126 3267 2.857152 GCAATCAGCGAGTACTCTTCAG 59.143 50.000 20.34 9.19 0.00 3.02
2127 3268 3.443037 CAATCAGCGAGTACTCTTCAGG 58.557 50.000 20.34 5.88 0.00 3.86
2128 3269 2.491675 TCAGCGAGTACTCTTCAGGA 57.508 50.000 20.34 10.56 0.00 3.86
2129 3270 2.791655 TCAGCGAGTACTCTTCAGGAA 58.208 47.619 20.34 0.00 0.00 3.36
2130 3271 2.750166 TCAGCGAGTACTCTTCAGGAAG 59.250 50.000 20.34 2.60 39.71 3.46
2131 3272 1.474879 AGCGAGTACTCTTCAGGAAGC 59.525 52.381 20.34 13.11 38.28 3.86
2132 3273 1.470112 GCGAGTACTCTTCAGGAAGCC 60.470 57.143 20.34 0.00 38.28 4.35
2133 3274 1.135333 CGAGTACTCTTCAGGAAGCCC 59.865 57.143 20.34 0.00 38.28 5.19
2134 3275 1.135333 GAGTACTCTTCAGGAAGCCCG 59.865 57.143 15.91 0.00 38.28 6.13
2135 3276 0.460459 GTACTCTTCAGGAAGCCCGC 60.460 60.000 4.15 0.00 38.28 6.13
2136 3277 0.902984 TACTCTTCAGGAAGCCCGCA 60.903 55.000 4.15 0.00 38.28 5.69
2137 3278 1.003355 CTCTTCAGGAAGCCCGCAA 60.003 57.895 4.15 0.00 38.28 4.85
2138 3279 1.003355 TCTTCAGGAAGCCCGCAAG 60.003 57.895 4.15 0.00 38.28 4.01
2139 3280 2.469465 TCTTCAGGAAGCCCGCAAGG 62.469 60.000 4.15 0.00 46.97 3.61
2152 3293 2.336554 CGCAAGGGTCACTTTTGATG 57.663 50.000 0.00 0.00 37.29 3.07
2153 3294 1.068333 CGCAAGGGTCACTTTTGATGG 60.068 52.381 0.00 0.00 37.29 3.51
2154 3295 2.238521 GCAAGGGTCACTTTTGATGGA 58.761 47.619 0.00 0.00 37.29 3.41
2155 3296 2.029918 GCAAGGGTCACTTTTGATGGAC 60.030 50.000 0.00 0.00 37.29 4.02
2156 3297 3.490348 CAAGGGTCACTTTTGATGGACT 58.510 45.455 0.00 0.00 37.29 3.85
2157 3298 3.146104 AGGGTCACTTTTGATGGACTG 57.854 47.619 0.00 0.00 33.11 3.51
2158 3299 2.162681 GGGTCACTTTTGATGGACTGG 58.837 52.381 0.00 0.00 33.11 4.00
2159 3300 2.162681 GGTCACTTTTGATGGACTGGG 58.837 52.381 0.00 0.00 33.11 4.45
2160 3301 2.224769 GGTCACTTTTGATGGACTGGGA 60.225 50.000 0.00 0.00 33.11 4.37
2161 3302 3.077359 GTCACTTTTGATGGACTGGGAG 58.923 50.000 0.00 0.00 33.11 4.30
2162 3303 1.815003 CACTTTTGATGGACTGGGAGC 59.185 52.381 0.00 0.00 0.00 4.70
2163 3304 1.089920 CTTTTGATGGACTGGGAGCG 58.910 55.000 0.00 0.00 0.00 5.03
2164 3305 0.960364 TTTTGATGGACTGGGAGCGC 60.960 55.000 0.00 0.00 0.00 5.92
2165 3306 3.664025 TTGATGGACTGGGAGCGCG 62.664 63.158 0.00 0.00 0.00 6.86
2166 3307 4.148825 GATGGACTGGGAGCGCGT 62.149 66.667 8.43 0.00 0.00 6.01
2167 3308 4.148825 ATGGACTGGGAGCGCGTC 62.149 66.667 8.43 2.29 0.00 5.19
2169 3310 4.148825 GGACTGGGAGCGCGTCAT 62.149 66.667 8.43 0.00 0.00 3.06
2170 3311 2.125512 GACTGGGAGCGCGTCATT 60.126 61.111 8.43 0.00 0.00 2.57
2171 3312 1.741770 GACTGGGAGCGCGTCATTT 60.742 57.895 8.43 0.00 0.00 2.32
2172 3313 1.970917 GACTGGGAGCGCGTCATTTG 61.971 60.000 8.43 0.00 0.00 2.32
2173 3314 2.745884 TGGGAGCGCGTCATTTGG 60.746 61.111 8.43 0.00 0.00 3.28
2174 3315 4.179579 GGGAGCGCGTCATTTGGC 62.180 66.667 8.43 0.00 0.00 4.52
2175 3316 3.430862 GGAGCGCGTCATTTGGCA 61.431 61.111 8.43 0.00 0.00 4.92
2176 3317 2.764314 GGAGCGCGTCATTTGGCAT 61.764 57.895 8.43 0.00 0.00 4.40
2177 3318 1.584483 GAGCGCGTCATTTGGCATG 60.584 57.895 8.43 0.00 0.00 4.06
2178 3319 3.249605 GCGCGTCATTTGGCATGC 61.250 61.111 9.90 9.90 0.00 4.06
2179 3320 2.486504 CGCGTCATTTGGCATGCT 59.513 55.556 18.92 0.00 0.00 3.79
2180 3321 1.584483 CGCGTCATTTGGCATGCTC 60.584 57.895 18.92 8.46 0.00 4.26
2181 3322 1.805254 GCGTCATTTGGCATGCTCT 59.195 52.632 18.92 0.00 0.00 4.09
2182 3323 0.248377 GCGTCATTTGGCATGCTCTC 60.248 55.000 18.92 0.95 0.00 3.20
2183 3324 1.089112 CGTCATTTGGCATGCTCTCA 58.911 50.000 18.92 4.09 0.00 3.27
2184 3325 1.063616 CGTCATTTGGCATGCTCTCAG 59.936 52.381 18.92 5.67 0.00 3.35
2185 3326 1.100510 TCATTTGGCATGCTCTCAGC 58.899 50.000 18.92 0.00 42.82 4.26
2208 3349 2.971997 GCCACGTATTGCGATCAGA 58.028 52.632 0.00 0.00 44.77 3.27
2209 3350 1.286501 GCCACGTATTGCGATCAGAA 58.713 50.000 0.00 0.00 44.77 3.02
2210 3351 1.867233 GCCACGTATTGCGATCAGAAT 59.133 47.619 0.00 0.00 44.77 2.40
2211 3352 2.348872 GCCACGTATTGCGATCAGAATG 60.349 50.000 0.00 0.00 44.77 2.67
2212 3353 2.348872 CCACGTATTGCGATCAGAATGC 60.349 50.000 0.00 0.00 44.77 3.56
2213 3354 2.541346 CACGTATTGCGATCAGAATGCT 59.459 45.455 0.00 0.00 44.77 3.79
2214 3355 3.001634 CACGTATTGCGATCAGAATGCTT 59.998 43.478 0.00 0.00 44.77 3.91
2215 3356 3.623060 ACGTATTGCGATCAGAATGCTTT 59.377 39.130 0.00 0.00 44.77 3.51
2216 3357 4.206843 CGTATTGCGATCAGAATGCTTTC 58.793 43.478 4.20 4.20 44.77 2.62
2217 3358 4.025396 CGTATTGCGATCAGAATGCTTTCT 60.025 41.667 8.97 8.97 42.25 2.52
2218 3359 4.548991 ATTGCGATCAGAATGCTTTCTC 57.451 40.909 11.69 2.09 40.28 2.87
2219 3360 3.257469 TGCGATCAGAATGCTTTCTCT 57.743 42.857 11.69 3.18 40.28 3.10
2220 3361 2.934553 TGCGATCAGAATGCTTTCTCTG 59.065 45.455 11.69 3.69 40.28 3.35
2221 3362 2.287373 GCGATCAGAATGCTTTCTCTGG 59.713 50.000 11.69 5.71 40.28 3.86
2222 3363 3.790091 CGATCAGAATGCTTTCTCTGGA 58.210 45.455 11.69 7.45 40.28 3.86
2223 3364 4.378774 CGATCAGAATGCTTTCTCTGGAT 58.621 43.478 11.69 11.45 40.28 3.41
2224 3365 4.448395 CGATCAGAATGCTTTCTCTGGATC 59.552 45.833 20.33 20.33 40.28 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.819595 CTTGGTCGACCGCATGGG 60.820 66.667 28.70 11.24 40.75 4.00
14 15 0.591170 AAAACTTGGTCGACCGCATG 59.409 50.000 28.70 19.49 39.43 4.06
15 16 0.872388 GAAAACTTGGTCGACCGCAT 59.128 50.000 28.70 13.93 39.43 4.73
16 17 1.492319 CGAAAACTTGGTCGACCGCA 61.492 55.000 28.70 17.25 39.64 5.69
17 18 1.203313 CGAAAACTTGGTCGACCGC 59.797 57.895 28.70 7.51 39.64 5.68
18 19 2.889578 TCGAAAACTTGGTCGACCG 58.110 52.632 28.70 18.15 41.13 4.79
73 76 5.395768 CGATGGAGTTTTTGATCCTAGACCT 60.396 44.000 0.00 0.00 36.50 3.85
74 77 4.811557 CGATGGAGTTTTTGATCCTAGACC 59.188 45.833 0.00 0.00 36.50 3.85
85 88 2.616842 GACCACACACGATGGAGTTTTT 59.383 45.455 0.00 0.00 39.87 1.94
147 154 3.738282 GTGGTTATGCAGAGACATCGATC 59.262 47.826 0.00 0.00 0.00 3.69
150 157 2.604914 GTGTGGTTATGCAGAGACATCG 59.395 50.000 0.00 0.00 0.00 3.84
177 184 2.271800 CATCTCGGAGGAAACCTTTCG 58.728 52.381 4.96 0.00 38.06 3.46
191 198 2.120232 GTATTCGTCCAGCACATCTCG 58.880 52.381 0.00 0.00 0.00 4.04
192 199 2.120232 CGTATTCGTCCAGCACATCTC 58.880 52.381 0.00 0.00 0.00 2.75
193 200 1.749063 TCGTATTCGTCCAGCACATCT 59.251 47.619 0.00 0.00 38.33 2.90
198 205 2.096980 CAGTAGTCGTATTCGTCCAGCA 59.903 50.000 0.00 0.00 38.33 4.41
200 207 4.352600 AACAGTAGTCGTATTCGTCCAG 57.647 45.455 0.00 0.00 38.33 3.86
207 214 7.308469 GCAGGCTAGTATAACAGTAGTCGTATT 60.308 40.741 0.00 0.00 39.41 1.89
208 215 6.149142 GCAGGCTAGTATAACAGTAGTCGTAT 59.851 42.308 0.00 0.00 39.41 3.06
209 216 5.468072 GCAGGCTAGTATAACAGTAGTCGTA 59.532 44.000 0.00 0.00 39.41 3.43
210 217 4.275443 GCAGGCTAGTATAACAGTAGTCGT 59.725 45.833 0.00 0.00 39.41 4.34
211 218 4.515944 AGCAGGCTAGTATAACAGTAGTCG 59.484 45.833 0.00 0.00 39.41 4.18
212 219 7.690952 ATAGCAGGCTAGTATAACAGTAGTC 57.309 40.000 7.14 0.00 35.34 2.59
221 228 9.367160 TGCATGAATATATAGCAGGCTAGTATA 57.633 33.333 19.33 9.11 39.75 1.47
222 229 8.255111 TGCATGAATATATAGCAGGCTAGTAT 57.745 34.615 19.33 5.42 39.75 2.12
223 230 7.660030 TGCATGAATATATAGCAGGCTAGTA 57.340 36.000 19.33 3.42 39.75 1.82
247 257 4.724399 TCATCTTATTCTCCTCGAGAGCT 58.276 43.478 15.71 0.00 42.90 4.09
331 536 9.265901 TCGTATTACTACAGTAGTATGTTCCTC 57.734 37.037 19.26 7.17 40.66 3.71
343 548 5.451520 GCCAAGTGGATCGTATTACTACAGT 60.452 44.000 0.18 0.00 37.39 3.55
345 550 4.498513 CGCCAAGTGGATCGTATTACTACA 60.499 45.833 0.18 0.00 37.39 2.74
372 577 0.753479 GAGTCGCTCTCCCAGATCCA 60.753 60.000 0.00 0.00 37.22 3.41
385 590 4.034258 TCGTGTGGTCCGAGTCGC 62.034 66.667 7.12 0.00 0.00 5.19
425 1178 2.978010 GGCACGGACCACTGGTTG 60.978 66.667 1.13 1.01 35.25 3.77
437 1190 0.594796 GACAAAAACAGGCAGGCACG 60.595 55.000 0.00 0.00 0.00 5.34
465 1218 2.009774 ACGGAGTAAGTATACGTGCGT 58.990 47.619 0.00 9.92 41.94 5.24
479 1232 3.848347 CTGCTGTGTGCGACGGAGT 62.848 63.158 0.00 0.00 46.63 3.85
623 1383 4.179599 GGGAGGGAGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
626 1386 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
627 1387 2.687909 GATGGAGGGAGGGAGGGAGG 62.688 70.000 0.00 0.00 0.00 4.30
628 1388 1.152139 GATGGAGGGAGGGAGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
629 1389 3.037715 GATGGAGGGAGGGAGGGA 58.962 66.667 0.00 0.00 0.00 4.20
910 1686 2.795175 TCTCGCCGGAGATATTTGAC 57.205 50.000 8.83 0.00 44.28 3.18
945 1721 1.450312 CGGCAAGCTCTCCGGAAAT 60.450 57.895 16.29 0.00 41.82 2.17
950 1726 4.082523 TTCCCGGCAAGCTCTCCG 62.083 66.667 16.93 16.93 44.89 4.63
1273 2095 4.771356 GCTGGCACATGCACGCTG 62.771 66.667 6.15 0.00 44.36 5.18
1277 2108 0.883833 AAACTAGCTGGCACATGCAC 59.116 50.000 6.15 0.00 44.36 4.57
1280 2111 3.648339 AACAAAACTAGCTGGCACATG 57.352 42.857 0.00 0.00 38.20 3.21
1287 2118 3.004106 AGCAGAGCAAACAAAACTAGCTG 59.996 43.478 0.00 0.00 35.36 4.24
1362 2199 9.778741 GTACATAAGATAACAAGAATCCATCCA 57.221 33.333 0.00 0.00 0.00 3.41
1411 2300 7.418025 CGGAGATACCAATTTAGAAGAGAAGGT 60.418 40.741 0.00 0.00 38.90 3.50
1416 2305 6.217294 GGACGGAGATACCAATTTAGAAGAG 58.783 44.000 0.00 0.00 38.90 2.85
1423 2312 2.419574 CCACGGACGGAGATACCAATTT 60.420 50.000 0.00 0.00 38.90 1.82
1425 2314 0.750850 CCACGGACGGAGATACCAAT 59.249 55.000 0.00 0.00 38.90 3.16
1427 2316 1.303948 TCCACGGACGGAGATACCA 59.696 57.895 0.00 0.00 38.90 3.25
1428 2317 4.247781 TCCACGGACGGAGATACC 57.752 61.111 0.00 0.00 0.00 2.73
1437 2326 1.146263 CCTATTGGCCTCCACGGAC 59.854 63.158 3.32 0.00 43.30 4.79
1438 2327 0.399949 ATCCTATTGGCCTCCACGGA 60.400 55.000 3.32 3.95 30.78 4.69
1439 2328 0.474184 AATCCTATTGGCCTCCACGG 59.526 55.000 3.32 0.00 30.78 4.94
1440 2329 2.368875 AGTAATCCTATTGGCCTCCACG 59.631 50.000 3.32 0.00 30.78 4.94
1441 2330 5.763876 ATAGTAATCCTATTGGCCTCCAC 57.236 43.478 3.32 0.00 32.15 4.02
1442 2331 6.780198 AAATAGTAATCCTATTGGCCTCCA 57.220 37.500 3.32 0.00 43.99 3.86
1443 2332 7.919151 ACTAAATAGTAATCCTATTGGCCTCC 58.081 38.462 3.32 0.00 43.99 4.30
1460 2568 9.976255 GCATGAGATCGTAGTACTACTAAATAG 57.024 37.037 26.36 12.76 31.62 1.73
1462 2570 8.392372 TGCATGAGATCGTAGTACTACTAAAT 57.608 34.615 26.36 17.90 31.62 1.40
1463 2571 7.797038 TGCATGAGATCGTAGTACTACTAAA 57.203 36.000 26.36 14.54 31.62 1.85
1464 2572 7.713942 TCTTGCATGAGATCGTAGTACTACTAA 59.286 37.037 26.36 16.70 31.62 2.24
1465 2573 7.215085 TCTTGCATGAGATCGTAGTACTACTA 58.785 38.462 26.36 18.53 34.04 1.82
1466 2574 6.056236 TCTTGCATGAGATCGTAGTACTACT 58.944 40.000 26.36 12.22 34.04 2.57
1467 2575 6.203145 TCTCTTGCATGAGATCGTAGTACTAC 59.797 42.308 24.24 21.06 38.08 2.73
1468 2576 6.289064 TCTCTTGCATGAGATCGTAGTACTA 58.711 40.000 24.24 0.00 38.08 1.82
1469 2577 5.126779 TCTCTTGCATGAGATCGTAGTACT 58.873 41.667 24.24 0.00 38.08 2.73
1470 2578 5.237561 TCTCTCTTGCATGAGATCGTAGTAC 59.762 44.000 27.06 0.00 41.59 2.73
1473 2581 4.827304 TCTCTCTTGCATGAGATCGTAG 57.173 45.455 27.06 17.38 41.59 3.51
1476 2584 3.382855 CCTTCTCTCTTGCATGAGATCG 58.617 50.000 27.06 18.57 41.59 3.69
1499 2607 6.013379 TGGATAACAAAGATCCTCACACTTCT 60.013 38.462 3.49 0.00 43.00 2.85
1507 2616 5.574970 AGGGATGGATAACAAAGATCCTC 57.425 43.478 0.00 0.00 43.00 3.71
1510 2619 8.951243 GCTAATTAGGGATGGATAACAAAGATC 58.049 37.037 14.28 0.00 0.00 2.75
1514 2623 7.073725 AGGAGCTAATTAGGGATGGATAACAAA 59.926 37.037 14.28 0.00 0.00 2.83
1549 2658 8.157476 GGGAAATGTATGAACATCCATACTACT 58.843 37.037 13.17 0.95 45.79 2.57
1553 2662 6.306987 AGGGGAAATGTATGAACATCCATAC 58.693 40.000 0.00 0.00 45.79 2.39
1556 2665 4.478317 AGAGGGGAAATGTATGAACATCCA 59.522 41.667 0.00 0.00 45.79 3.41
1557 2666 5.053978 AGAGGGGAAATGTATGAACATCC 57.946 43.478 0.00 0.00 45.79 3.51
1558 2667 5.066593 GGAGAGGGGAAATGTATGAACATC 58.933 45.833 0.00 0.00 45.79 3.06
1603 2721 5.835280 AGGTGAAAAGTGTGAGGAATCAAAT 59.165 36.000 0.00 0.00 0.00 2.32
1604 2722 5.200483 AGGTGAAAAGTGTGAGGAATCAAA 58.800 37.500 0.00 0.00 0.00 2.69
1605 2723 4.792068 AGGTGAAAAGTGTGAGGAATCAA 58.208 39.130 0.00 0.00 0.00 2.57
1606 2724 4.437682 AGGTGAAAAGTGTGAGGAATCA 57.562 40.909 0.00 0.00 0.00 2.57
1607 2725 5.066593 AGAAGGTGAAAAGTGTGAGGAATC 58.933 41.667 0.00 0.00 0.00 2.52
1637 2755 5.913137 AGGTGTGATTTTCTCAACAACAA 57.087 34.783 0.00 0.00 35.07 2.83
1639 2757 6.329496 TGAAAGGTGTGATTTTCTCAACAAC 58.671 36.000 0.00 0.00 35.07 3.32
1640 2758 6.522625 TGAAAGGTGTGATTTTCTCAACAA 57.477 33.333 0.00 0.00 35.07 2.83
1641 2759 6.547141 AGATGAAAGGTGTGATTTTCTCAACA 59.453 34.615 0.00 0.00 35.07 3.33
1643 2761 6.772233 TCAGATGAAAGGTGTGATTTTCTCAA 59.228 34.615 0.00 0.00 35.07 3.02
1644 2762 6.205464 GTCAGATGAAAGGTGTGATTTTCTCA 59.795 38.462 0.00 0.00 35.02 3.27
1678 2796 4.377839 TCTCATAGCAGTAGCAGACAAC 57.622 45.455 0.00 0.00 45.49 3.32
1725 2849 5.392767 ACCAACAACACAACACAAATACA 57.607 34.783 0.00 0.00 0.00 2.29
1726 2850 6.787225 TCTACCAACAACACAACACAAATAC 58.213 36.000 0.00 0.00 0.00 1.89
1755 2879 2.435234 CGCGGGAATTGACGGGAA 60.435 61.111 0.00 0.00 44.45 3.97
1757 2881 1.579084 TTTTCGCGGGAATTGACGGG 61.579 55.000 16.24 8.55 43.27 5.28
1759 2883 3.757623 TTTTTCGCGGGAATTGACG 57.242 47.368 16.24 0.00 30.88 4.35
1776 2900 8.674607 GGACCGAAGTTTTGACAGAATATATTT 58.325 33.333 0.00 0.00 0.00 1.40
1777 2901 7.011109 CGGACCGAAGTTTTGACAGAATATATT 59.989 37.037 8.64 0.00 0.00 1.28
1778 2902 6.479001 CGGACCGAAGTTTTGACAGAATATAT 59.521 38.462 8.64 0.00 0.00 0.86
1780 2904 4.630069 CGGACCGAAGTTTTGACAGAATAT 59.370 41.667 8.64 0.00 0.00 1.28
1819 2943 9.744468 GGTTTCAATTTTCAAATACTGTACAGT 57.256 29.630 30.13 30.13 45.02 3.55
1820 2944 9.191995 GGGTTTCAATTTTCAAATACTGTACAG 57.808 33.333 21.44 21.44 0.00 2.74
1821 2945 8.145122 GGGGTTTCAATTTTCAAATACTGTACA 58.855 33.333 0.00 0.00 0.00 2.90
1822 2946 8.145122 TGGGGTTTCAATTTTCAAATACTGTAC 58.855 33.333 0.00 0.00 0.00 2.90
1823 2947 8.251383 TGGGGTTTCAATTTTCAAATACTGTA 57.749 30.769 0.00 0.00 0.00 2.74
1993 3129 1.342074 TCAACAGACACCAGCTAGCT 58.658 50.000 12.68 12.68 0.00 3.32
1994 3130 2.072298 CTTCAACAGACACCAGCTAGC 58.928 52.381 6.62 6.62 0.00 3.42
1995 3131 2.300152 TCCTTCAACAGACACCAGCTAG 59.700 50.000 0.00 0.00 0.00 3.42
1996 3132 2.325484 TCCTTCAACAGACACCAGCTA 58.675 47.619 0.00 0.00 0.00 3.32
2110 3251 2.733858 GCTTCCTGAAGAGTACTCGCTG 60.734 54.545 17.07 15.46 40.79 5.18
2111 3252 1.474879 GCTTCCTGAAGAGTACTCGCT 59.525 52.381 17.07 8.65 40.79 4.93
2112 3253 1.470112 GGCTTCCTGAAGAGTACTCGC 60.470 57.143 17.07 13.50 40.79 5.03
2113 3254 1.135333 GGGCTTCCTGAAGAGTACTCG 59.865 57.143 17.07 2.89 40.79 4.18
2114 3255 1.135333 CGGGCTTCCTGAAGAGTACTC 59.865 57.143 15.41 15.41 40.79 2.59
2115 3256 1.187087 CGGGCTTCCTGAAGAGTACT 58.813 55.000 11.00 0.00 40.79 2.73
2116 3257 0.460459 GCGGGCTTCCTGAAGAGTAC 60.460 60.000 11.00 0.00 40.79 2.73
2117 3258 0.902984 TGCGGGCTTCCTGAAGAGTA 60.903 55.000 11.00 0.00 40.79 2.59
2118 3259 1.768684 TTGCGGGCTTCCTGAAGAGT 61.769 55.000 11.00 0.00 40.79 3.24
2119 3260 1.003355 TTGCGGGCTTCCTGAAGAG 60.003 57.895 11.00 2.76 40.79 2.85
2120 3261 1.003355 CTTGCGGGCTTCCTGAAGA 60.003 57.895 11.00 0.00 40.79 2.87
2121 3262 2.042831 CCTTGCGGGCTTCCTGAAG 61.043 63.158 2.48 2.48 41.24 3.02
2122 3263 2.034066 CCTTGCGGGCTTCCTGAA 59.966 61.111 0.00 0.00 29.82 3.02
2123 3264 4.033776 CCCTTGCGGGCTTCCTGA 62.034 66.667 0.00 0.00 45.33 3.86
2132 3273 1.068333 CATCAAAAGTGACCCTTGCGG 60.068 52.381 0.00 0.00 36.31 5.69
2133 3274 1.068333 CCATCAAAAGTGACCCTTGCG 60.068 52.381 0.00 0.00 36.31 4.85
2134 3275 2.029918 GTCCATCAAAAGTGACCCTTGC 60.030 50.000 0.00 0.00 36.31 4.01
2135 3276 3.254166 CAGTCCATCAAAAGTGACCCTTG 59.746 47.826 0.00 0.00 36.31 3.61
2136 3277 3.490348 CAGTCCATCAAAAGTGACCCTT 58.510 45.455 0.00 0.00 36.31 3.95
2137 3278 2.224867 CCAGTCCATCAAAAGTGACCCT 60.225 50.000 0.00 0.00 36.31 4.34
2138 3279 2.162681 CCAGTCCATCAAAAGTGACCC 58.837 52.381 0.00 0.00 36.31 4.46
2139 3280 2.162681 CCCAGTCCATCAAAAGTGACC 58.837 52.381 0.00 0.00 36.31 4.02
2140 3281 3.077359 CTCCCAGTCCATCAAAAGTGAC 58.923 50.000 0.00 0.00 36.31 3.67
2141 3282 2.553028 GCTCCCAGTCCATCAAAAGTGA 60.553 50.000 0.00 0.00 38.41 3.41
2142 3283 1.815003 GCTCCCAGTCCATCAAAAGTG 59.185 52.381 0.00 0.00 0.00 3.16
2143 3284 1.611673 CGCTCCCAGTCCATCAAAAGT 60.612 52.381 0.00 0.00 0.00 2.66
2144 3285 1.089920 CGCTCCCAGTCCATCAAAAG 58.910 55.000 0.00 0.00 0.00 2.27
2145 3286 0.960364 GCGCTCCCAGTCCATCAAAA 60.960 55.000 0.00 0.00 0.00 2.44
2146 3287 1.377202 GCGCTCCCAGTCCATCAAA 60.377 57.895 0.00 0.00 0.00 2.69
2147 3288 2.268920 GCGCTCCCAGTCCATCAA 59.731 61.111 0.00 0.00 0.00 2.57
2148 3289 4.147449 CGCGCTCCCAGTCCATCA 62.147 66.667 5.56 0.00 0.00 3.07
2149 3290 4.148825 ACGCGCTCCCAGTCCATC 62.149 66.667 5.73 0.00 0.00 3.51
2150 3291 4.148825 GACGCGCTCCCAGTCCAT 62.149 66.667 5.73 0.00 0.00 3.41
2152 3293 3.665675 AATGACGCGCTCCCAGTCC 62.666 63.158 5.73 0.00 34.24 3.85
2153 3294 1.741770 AAATGACGCGCTCCCAGTC 60.742 57.895 5.73 5.55 35.61 3.51
2154 3295 2.034879 CAAATGACGCGCTCCCAGT 61.035 57.895 5.73 0.00 0.00 4.00
2155 3296 2.753966 CCAAATGACGCGCTCCCAG 61.754 63.158 5.73 0.00 0.00 4.45
2156 3297 2.745884 CCAAATGACGCGCTCCCA 60.746 61.111 5.73 0.00 0.00 4.37
2157 3298 4.179579 GCCAAATGACGCGCTCCC 62.180 66.667 5.73 0.00 0.00 4.30
2158 3299 2.764314 ATGCCAAATGACGCGCTCC 61.764 57.895 5.73 0.00 0.00 4.70
2159 3300 1.584483 CATGCCAAATGACGCGCTC 60.584 57.895 5.73 3.58 0.00 5.03
2160 3301 2.486504 CATGCCAAATGACGCGCT 59.513 55.556 5.73 0.00 0.00 5.92
2161 3302 3.249605 GCATGCCAAATGACGCGC 61.250 61.111 5.73 0.00 0.00 6.86
2162 3303 1.584483 GAGCATGCCAAATGACGCG 60.584 57.895 15.66 3.53 0.00 6.01
2163 3304 0.248377 GAGAGCATGCCAAATGACGC 60.248 55.000 15.66 0.00 0.00 5.19
2164 3305 1.063616 CTGAGAGCATGCCAAATGACG 59.936 52.381 15.66 0.00 0.00 4.35
2165 3306 1.202268 GCTGAGAGCATGCCAAATGAC 60.202 52.381 15.66 0.00 41.89 3.06
2166 3307 1.100510 GCTGAGAGCATGCCAAATGA 58.899 50.000 15.66 0.00 41.89 2.57
2167 3308 0.102481 GGCTGAGAGCATGCCAAATG 59.898 55.000 15.66 3.58 44.75 2.32
2168 3309 1.381928 CGGCTGAGAGCATGCCAAAT 61.382 55.000 15.66 0.00 44.75 2.32
2169 3310 2.042259 CGGCTGAGAGCATGCCAAA 61.042 57.895 15.66 0.00 44.75 3.28
2170 3311 2.437180 CGGCTGAGAGCATGCCAA 60.437 61.111 15.66 0.00 44.75 4.52
2190 3331 1.286501 TTCTGATCGCAATACGTGGC 58.713 50.000 0.00 0.00 44.19 5.01
2191 3332 2.348872 GCATTCTGATCGCAATACGTGG 60.349 50.000 0.00 0.00 44.19 4.94
2192 3333 2.541346 AGCATTCTGATCGCAATACGTG 59.459 45.455 0.00 0.00 44.19 4.49
2193 3334 2.826428 AGCATTCTGATCGCAATACGT 58.174 42.857 0.00 0.00 44.19 3.57
2194 3335 3.867055 AAGCATTCTGATCGCAATACG 57.133 42.857 2.26 0.00 45.62 3.06
2195 3336 5.236047 AGAGAAAGCATTCTGATCGCAATAC 59.764 40.000 9.28 0.00 45.91 1.89
2196 3337 5.235831 CAGAGAAAGCATTCTGATCGCAATA 59.764 40.000 9.28 0.00 45.91 1.90
2197 3338 4.035324 CAGAGAAAGCATTCTGATCGCAAT 59.965 41.667 9.28 0.00 45.91 3.56
2198 3339 3.373130 CAGAGAAAGCATTCTGATCGCAA 59.627 43.478 9.28 0.00 45.91 4.85
2199 3340 2.934553 CAGAGAAAGCATTCTGATCGCA 59.065 45.455 9.28 0.00 45.91 5.10
2200 3341 2.287373 CCAGAGAAAGCATTCTGATCGC 59.713 50.000 9.28 0.00 45.91 4.58
2201 3342 3.790091 TCCAGAGAAAGCATTCTGATCG 58.210 45.455 9.28 0.00 45.91 3.69
2202 3343 5.927954 GATCCAGAGAAAGCATTCTGATC 57.072 43.478 9.28 11.06 45.91 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.