>input_sequence_86527
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-------------------ATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGG
CGGGGATCTGCTCGCGCTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACC
GTGCACCGCGTCACCTGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACCGCCTCTA
CTAG----------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G203400
AGTTGAACAACACCCATGCGGT-CGACCAAGTTTTCGATCAGTTCCGTTGGGCTCGATCTTT-CTGGGTGGATTCAGGTC
TAGGATCAAAAACTCCATCGTGTGTGGTCACGC----TGTTGCACGTCTAACGTGCAAGCAACGTGAGCCGTCGATCGAT
GTCTCTGCATAACCACACAATGGCGAAAGGTTTCCTCCGAGATGTGCTGGACGAATACGACTACTGTTATACTAGCCTGC
TA---TATATTCATGCAGCTCTCGAGGAGAATAAGATGAAAGC-------------------------------------
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-------------------------------------------------------------------------CATCACG
GTGAAAGTGAACGTTAGGAAACATTCGCCTCAAAGAATTCT-----TAGTAAGAAGAGGAACATACTACTGTAGTAATAC
GATCCACTTGGCGCCATGGATCTGGGAGAGCGACTCGGACCACACGACGCTCTGCGGCGAGGTTAA--------------
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------------------------------------------------------AACCAACCAGTGGTCCGTGCCTGCCT
GTTTTTGTCTACCCCGTACGCACGTATACTTACTCCGTCGCACACAGCAGA-------CTTAGTCAAGAAGCATACGCTT
GGCAGGGACGACATTATGGCCACCCCTAACCGCCACCTTCCCCGCCACCGTGAGCGCCATCAATGCCGTCCTCGCCCCGC
CTTAAATCCCTCCTCCTACCCCCTCCCCTCCCTCCCTCCCTCCAT----------------CGCACATTGCCTGCTTACT
GGCTCCCCGCCATTGCTGACCAGCGACCGCAACCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAGCGTCAAATATCTCCGGCGAGAGCTTCAGCGATATTTATTTCCG----GAGAGCTTGCCGGGAAGGGGGAGGAGGAG
GAGCGGCGGCGGCGGCGGCATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGG
CGGGGATCTGCTCGCGCTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACC
GTGCACCGCGTCACCTGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACCGCCTCTA
CTAGGCCGGCGGCC------------------------------------------ACCGTCTCCACCCGCGTCCCGTTT
CCTGACGGCCGGTGCA---------GCGTGCATGTGCCAGCTAGTTTTGTTTGC----TCTGCTTATTAATTTGTGTTTA
AGGCGTGCTCTCTAGCT--AGCTTGGAGATTGTTGCACTGGATGGATTCTTGTTATCTTATGTACATATGTTATGC----
------------------------------------------------AAGGTTGGATTACCTTCTCTTCTAAATTGGTA
TCTCCGTCCGTGG-------------------------------------------------------------------
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------------------------------------------------------------------------AGGCCAAT
AGGATTACTATTTAGTAGTACTACGATCTCATGCAAGAGAGAAGGGA-GAAGTGTGAGGATCTTTGTTATCCATCCCTAA
TTAGCTCCTCTTGTAATAGTAGTATGGA---------TGTTCATACATTTCCCCTCTCCTCTCCACGGCATTAACGTGTG
ATTTGATTCCTCACACTTTTCACCTTCTTCTTTTTTGTTGTTGAGAAAATCACACCTTTCATCTGACAAGGCCCTGTTGT
CTGCTACTGCTATGAGA------TATTTCGAAATAAACAAGGACGGGATGTATTTGTGTTGTGTTGTTGGTAGATTTTTT
CCCGTCAATTCCCGCGAAAAAATATATTCTGTCAAAACTTCGGTCCGCTGGAGGGGAAAGCTACTGTACAGTATTTGAAA
ATTGAAACCCCATGGCAGGCCGACCAC-------CAGCAGATGGGCATTAACTAATGTGCATGGCATACGAGGACATATG
ACACATGGATGTGGACAGCCCATACCAAAC--TACTCCTACTCTGGTGTAAATTTCGTTGGCCCACGATG---TACAATG
TCTGCGCCAGCTAGCTGGTGTCTGTTGAAGGAAGTGAT---TTACAA--GTCGCCATAGCCCAGATGCCGTCGACAGGCC
ATTTCTACGGTCATGGTAATTAAGCACTCGGCACAGTGCACATGTGCAATCAGCGAGTACTCTTCAGGAAGCCCGCAAGG
GTCACTTTTGATGGACTGGGAGCGCGTCATTTGGCATGCTCTCAGCCGCCGCCACGTATTGCGATCAGAATGCTTTCTCT
GGATC
>chr2B_1
AGTTGAACAACAACGCGTGCAGCCGACCAAGTTTTCGATCAGTTCCGTTGGGCTCGATCTTTTCTGGGTGGATTCTAGTC
TAGGATC-AAAACTCCATCGTGTGTGGTCACGC----TGTTGCACGTC-AACGTGCAAGCAACGTGAGCCGTCAATGGAT
GTCTGTGCGTAACCACACAATGGTGAAAGGTTTCCTCTCGGATGCGATGGACGG----------------ACTAGCCTGC
TA---TATATTCATGCTGCTCTCGAGGAGAATAAGATGAAAGCT------------------------------------
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--------------------------------------------------------------------------ATCACG
GTGAAAGTGAACGTTAGGAAGCATTCGCCTCAAAAAAATTCTACTGTAGTAAGAACAGGAACATACTGCAGTAGTAATAC
GATCCGCTTGGCGCCACGGATCTGGGAGACCGACTCGGACCACACGACGCTCTGCGGCGGGGTTAA--------------
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------------------------------------------------------ACCGAAGCAGTGGTCTGTGCCTGCCT
GTTTTTGTCTACCCCGTGCGTACGTATGCTTGCTGCGTCGCACACAGCAGAGAGCAGACTTAGTCAAGAAGCATACGCTT
GGCAGGGACGACATTATGGCCACCCCTAACCGCCACCTTCCCCACCACCGTGAGCGCCATCAATGCCGTCCTCGCCCGGC
CTTAAATCCCTCCTCCTA------------CCTCCGTCCATCCATCACAGATCACACCGCCCGCACATTGCCTGCTTACT
GGCTCCCCGCCATTGCTGACCAGTGACCGCAACCACCACCTTCCTGCCACTATATATATACCCCGCGCGCGCGCTGACGC
AGTGACAAATCGCACGGGCGGCGCGCGGCTTAGCTGTATTGCACTGTCCACCACCAC-----------------------
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-CAGCATCAAATATCTCCGGCGAGAGCTTCAGCGATATTTGTTTCTG----GAGAGCTTGCCGGGAAGGAGGAGGAGGAG
GAGGA---GCGGCGGCGGCATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGG
CGGGGATCTGCTCGCGGTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACC
GTGCACCGCGTCACCTGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACAGGCTCTA
CTAGACCGGC----------GATTGATCTGCGCGCGCGACGGA---------------CGTCTCCACCCGCGTCCCGTTT
CCTGACGGCCGGTGGACTGGAGCCTGCATGTATGTGCTAGCTAGTTTTGTTTGCTCGATCTGCTTATTAATTTGTGTTTC
AGGCATGCTCTCTAGCTTGAGCTTGGAGATTGTTGCAC----TGGATTCTTGTGGTCTTATGTACATATACGGGGTAGTA
TTCTGCAAGGTGGCAAGTCTTGATTAGTTATTTAATTTCCTCCG----AAGGTTGCATTGCCTTGTCTTCTCACTCTCCG
TCGAGACTGTAAAAACTGAGAAAGGGTTTTGCTCCTATTGCATACAATAGGTGCCGGCTCCTCTGTTTATATATGCACAT
AGCAACGAGGTTGTTGCGTCCACAATCAGGAGCTAACAACCAGATTACAACAAACAGAATCTTATGGCTTTACAACTTGA
TACGCAACTGAATCATATGCGCAAG----TCTACATCATTAGTATCTGCACAACATATGCACGTATCTTAACAGACCCAT
AGGATTTGT---------TAGTAGGATCTCATGCAAGAGAGAAGGGG-GAAGTGTCAGAATC-TTGTTATCCATCACTAA
TTAGCTCCTCTTGTAATTGTAATAGTAGTAGCATGGCTGCTCATACATTTCCCCTCTCCTCTTCACGGCATTAACGTGTG
-----ATTCCTCACACTTTTCATCTTTCTTTTCTGGTGAG------AAATCACACCTTTCATCTGACAAGGCCCTATTGT
CTACTACTACTACTACGGGATATTATTTCGAAATAAACTAGGACGGGAGATATTTGTGTGGCGTTGTTGTTCAAATTTGT
TCTGTCAATTCCTGCGATCTTTTTTATTCTGTTAAAACTTTGGTCCGCTGGAGGGGAAAGCA-----ACAGTATTTGAAA
ATTGAAACCCCATGGCAGGCCGACCACCAGCAGGCAGCAGATGGGCATTAACTAATGTGCATGGCATACGAGGACATATG
GCACATGGATGTGGACAGCCCATACCAAACTATACTCCTACTCTGGTGTAAATTTCGTTGGCCCACGATGGAGTACAATG
TTTGCTCC----AGCTGGTGTCTGCGGAAGGAAGTGAT---TTACAACTGTCGCCATAGCGCAGATGCTGTCCACAGGCC
ATTTCTACGGTCATGGTAATTAAGCACTCGGCACAGTGCACATGTGCAAT------------------------------
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>chr2D_1
AGTTGAACAACAACGCACGCAGCCGACCAAGTTTTCGATCAGTTCCGTTGGGCTCGATCTTT-CTGGGTAGATTCTCGTC
TAGGATC-GAAACTCCATCGTGTGCGGTGGCGCTGTTTGTTGCACGTC-GACGTGCAAGCAACGTGAGCCGTCAATGGAT
GTCTCTGCATAACCACACATCGGTGAAAGGTTTCCTCTCGGATGCGATGGACGG----------------ACCAGACTAC
TAAGTTATATTCATGCTGTTCTCGAGGAGAATAAGATGAAAGCCATCACGGTGAAAGCGAACGTTAGGAAACATTCGCCT
CAATTTTTTTACTCCAATAAGAACAGGAACATACTGTAGTAATGCGGTCCACTTGGCACCACGAATCTGGAAGATGGACT
CGGACCACACGACGCTCCGCGGTGAGGTTAAGACTGACCATAATGAAGAGTAACTCAGACTAGTAACATAAGCCATCACG
GTGAAAGTGAACGTTAGGAAACATTCGCCTCAATTT--TTTTACTCCAATAAGAACAGCAACATACT---GTAGTAATAC
GGTCCACTTGGCGCCACGGATTTGGGAGATGGACTCGGACCACACGACGCTCTGCGGCGAGGTTAAGACTGGCCACAATG
GAGAGTAATTTAGACTAGTAACATGCCTATGTTACTAGTCAATATTACTACCTCTATAGTGGTAAGTAACATTATGTGTG
GTAACATGCAACACTTTATTTATTAGGCTATAGACTTATTTACCTTGATATGTGTGATGTTACTCATACTATCCCTTGTA
GACTAGCCACAGTGGGAGTAACTTCGGTAGTAACATCGAGTCCAACTCAGCAATTTTGCTTATGTGGCAATGAGTTAATG
AGGAGAGATGTAGTACTAGTAACTTAGCTAGTTACTGTAACATCACATGTCCCAATGCAATATGAGTCTATAACGTAATA
AATGAAGCTTTGCATGTTACCACACTTATGTTACTACCCACTATTGAGGTAGTAGCATAGAGTAGTAACATGGGCATGTT
ACTATTCTATGTTACTACCCATTGTGGCTAGTCGTACATGCCTCTCTTTATTTATTTATTGCTTGCCACATCATCTATTT
TACCTAGATATGTGTGATGTTACTATCTATATTACTTCATCGTGGATAGTCTAAACCAAACCAGTGGTCTGTGCCTGCCT
GTTTTTGTCTACCCCGTGCGTACGTATACTTGCTCCGTCGCACACAACAGA-------CTTAGTCAAGAAGCATACGCTT
GGCAGGGACGACATTATGGCCACCCCTAACCGCCACCTTCCCCACCACCGTGAGCGCCATCAATGCCGTCCTCGCCTCGC
CTTAAATCCCTCCTCCTACCCCTTC----CCCTCCCTCCCTCCAT----------------CGCACATTGCCTGCTTACT
GGCTCCCCGCCATTGCTGACCAGTGACCGCAACCACCACCTTCCTGCCACTATATATATACCC--CGCGCGCGCTGACGC
AGTGACAAATCGCACGGGCGGCGCGCGGCTTAGCTGTATTGCACTGTCCACCACCGC-----------------------
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-CAGCATCAAATATCTCCGGCGAGAGTTTCCGCGATATTTGTTTCTTTCCAGAGAGTTTTCCGGGAAGGGGGAGGAGGAG
GA---------GCGGCGGCATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGG
CGGGGATCTGCTCGCGGTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACC
GTGCACCGCGTCACCTGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACAGGCTCTA
CTAGGCCGGCGGCCGACGCTGATTGATCTGCGCGCGCGACGGACGGCCGGCCGGCCACCGTCTCCACCCACGTCCCGTTT
CCTGACTGACGGCCGG-TGGAGCCTGCCTGTATGTGCTAGCTAGTTTTGTTTGCTCGATCTGCTTA---ATTTGTGTTTC
AGGCATGCCCTCTAGCTTGAGCTTGGAGATTGTTACACCGGATGGATTCTTGTGGTCTTATGTACATATACGGAGTAGTA
TTATGCAAGGTGGCTAGTCTTGATTAGTTATTTAATTTCCTCCGAAATAAGGTTGCATTGCCTCGTCTTCTCAGTCTCCG
TCGAGAGTGTAAAAACTGAGAAAGGGTTTTGCTCCG--TGCATACAATAGGTGCCGGCTCCTCTGTTTATATG----CAT
AGCAACGAGGTTGTTGCGTCCACAATCAGGAGCTAAC--------------AAACTGAATCTTATGGCTTTACAACTTGA
TACGCAAGTCTAGCTAACTATCTGGACTCTCTACATCATTG---TCTGCACAACATCTACACGTATCTTAACAGACCCAT
AGGATTAGT---------TAGTAGGATCTCATGCAAGAGAGAAGGGGAGAAGTGTCAGAATC-TTGTTATCCATCACTAA
GTAGCTCCTCTTG---------TAATAGTAGCATGGCTGTTCATACATTTCCCCTCTCCTCTCCACGGCATTAACGTGTG
-----GTTCCTCACACTTTTCATCTTTCTTTGTTGTTC----GAGAAAATCACACTTTTCATCTGACAAGGCCCTATTGT
CTGCTACTACTATGAGA------TATTTCGAAATAAACAAG-ACGGGGGATATTTGTGTGGCGTTGTTGTTAAAATTTGT
TCTGTCAATTCCTGCGATCTTTTTTATTCTGTCAAAATTTTGGTCCGCTGGAGGGGAAAGCA-----ATAGCGTTTGAAA
ATTGAAACCCCATGGCAGGCCGACCACCAACAAG-------TGAGCATTAACTGCATGTGCATGCATACGAGGACATATG
GCACATGGATGTGGACAGCCCATACCAAAC--TACTCCTACTCTGGTGTAAATTTCGTTGGCGCACGATG---TACAATG
TCTGCGCC----AGCTGGTGTATGTTGAAGGAAGTGATTTATTACAACTGTCACCAGAGCCCAGATGCCGTCGACAGGCC
ATTTCTACGGTCATGGTAATTGAGCACTCGGCACAGTGCACATGTGCAAT------------------------------
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>SNPs
------------S-SSSSSSSS-----------------------------------------------------SS---
-------S----------------------------------------S------------------------S--S---
-----------------------S-------------SSS----S-S------SSSSSSSSSSSSSSSSS----------
----------------S---------------------------------------------------------------
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----------------------------------S--S-S---------------S-----------S-S----------
----------------S------------S--------------------------------------------------
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-------------------------------------------------------S-S-----------S----------
-----------------S--S----------S------------------------------------------------
-------------------------------------------S------------------------------------
----------------------S--SSSS---------------------------------------------------
-----------------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----S----------------------------------S----S----------------------------------
---SSSSS------------------------------------------------------------------------
----------------S---------------------------------------------------------------
------------------------------------------------------------------------S-S-----
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--------------S------------S--S------S-----------------------------------------S
----S---------------------------------S--------------SS--------------SSSSS-S----
-------------------------------------------------------S---S----S------S-S-SSSSS
--SSSSSSSSSSS-------------------------------------------------------------------
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--------------------------------------------------------------------------S--S--
-------S-SSSSSSSSS--S--S----------------------S--------S--S---S------------S----
-----------------S---S--SSSS----------------------------------------------------
SSSSS-----------------S---SS-S----S-SSS-SS---------------------------------S----
--------S---------------------------------------SS---------S-S-------S--S-S---S-
S-S---------S----SSSSS-S----------------S--------------------SSSSSS-------------
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S-------------------------------------------------------------------------------
--------SSSS--------------------------------------------------------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_1383
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---AAATCCCTCCTCCTACCCCC---------------------------------------------------------
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>reverse_3308
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---------------------------CATTTGGCATGCTCTCAGCC---------------------------------
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