Multiple sequence alignment - TraesCS2A01G201500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G201500 chr2A 100.000 1412 0 0 919 2330 174790690 174789279 0.000000e+00 2608.0
1 TraesCS2A01G201500 chr2A 100.000 877 0 0 1 877 174791608 174790732 0.000000e+00 1620.0
2 TraesCS2A01G201500 chr2A 84.211 76 10 2 2227 2302 164866716 164866789 3.210000e-09 73.1
3 TraesCS2A01G201500 chr6A 99.762 842 1 1 1 841 393547440 393546599 0.000000e+00 1543.0
4 TraesCS2A01G201500 chr6A 99.551 445 2 0 919 1363 393546446 393546002 0.000000e+00 811.0
5 TraesCS2A01G201500 chr2B 90.016 631 55 7 1364 1989 222588607 222587980 0.000000e+00 809.0
6 TraesCS2A01G201500 chr2B 83.475 236 25 13 2052 2279 222587974 222587745 8.440000e-50 207.0
7 TraesCS2A01G201500 chr2B 94.030 67 4 0 2264 2330 222587723 222587657 4.100000e-18 102.0
8 TraesCS2A01G201500 chrUn 100.000 399 0 0 965 1363 478887573 478887175 0.000000e+00 737.0
9 TraesCS2A01G201500 chr2D 91.512 377 23 3 1364 1733 174581274 174580900 5.740000e-141 510.0
10 TraesCS2A01G201500 chr2D 98.039 51 1 0 2052 2102 174579185 174579135 3.190000e-14 89.8
11 TraesCS2A01G201500 chr2D 100.000 39 0 0 1996 2034 174579208 174579170 3.210000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G201500 chr2A 174789279 174791608 2329 True 2114.000000 2608 100.000000 1 2330 2 chr2A.!!$R1 2329
1 TraesCS2A01G201500 chr6A 393546002 393547440 1438 True 1177.000000 1543 99.656500 1 1363 2 chr6A.!!$R1 1362
2 TraesCS2A01G201500 chr2B 222587657 222588607 950 True 372.666667 809 89.173667 1364 2330 3 chr2B.!!$R1 966
3 TraesCS2A01G201500 chr2D 174579135 174581274 2139 True 224.300000 510 96.517000 1364 2102 3 chr2D.!!$R1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 875 0.24928 TGAAACGAAGCAGAGCGTCA 60.249 50.0 5.83 0.0 40.23 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2172 3695 0.118346 TGGGCTGGTCCTCCTAGAAA 59.882 55.0 0.0 0.0 34.39 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
408 409 3.519913 CCCTTCTACTTCTTACTGCCCTT 59.480 47.826 0.00 0.00 0.00 3.95
839 840 8.604640 ATCACTCTTATCAGCTTCATGTATTG 57.395 34.615 0.00 0.00 0.00 1.90
840 841 7.785033 TCACTCTTATCAGCTTCATGTATTGA 58.215 34.615 0.00 0.00 0.00 2.57
841 842 8.427276 TCACTCTTATCAGCTTCATGTATTGAT 58.573 33.333 0.00 1.79 33.34 2.57
842 843 9.053840 CACTCTTATCAGCTTCATGTATTGATT 57.946 33.333 8.99 0.00 33.34 2.57
843 844 9.053840 ACTCTTATCAGCTTCATGTATTGATTG 57.946 33.333 8.99 5.23 33.34 2.67
844 845 8.969260 TCTTATCAGCTTCATGTATTGATTGT 57.031 30.769 8.99 0.00 33.34 2.71
845 846 9.049523 TCTTATCAGCTTCATGTATTGATTGTC 57.950 33.333 8.99 0.00 33.34 3.18
846 847 8.735692 TTATCAGCTTCATGTATTGATTGTCA 57.264 30.769 8.99 0.00 33.34 3.58
847 848 6.673154 TCAGCTTCATGTATTGATTGTCAG 57.327 37.500 0.00 0.00 33.34 3.51
848 849 5.587443 TCAGCTTCATGTATTGATTGTCAGG 59.413 40.000 0.00 0.00 33.34 3.86
849 850 5.587443 CAGCTTCATGTATTGATTGTCAGGA 59.413 40.000 0.00 0.00 33.34 3.86
850 851 5.821470 AGCTTCATGTATTGATTGTCAGGAG 59.179 40.000 0.00 0.00 33.34 3.69
851 852 5.819379 GCTTCATGTATTGATTGTCAGGAGA 59.181 40.000 0.00 0.00 33.34 3.71
852 853 6.317140 GCTTCATGTATTGATTGTCAGGAGAA 59.683 38.462 0.00 0.00 33.34 2.87
853 854 7.615582 TTCATGTATTGATTGTCAGGAGAAC 57.384 36.000 0.00 0.00 33.34 3.01
854 855 6.950842 TCATGTATTGATTGTCAGGAGAACT 58.049 36.000 0.00 0.00 0.00 3.01
855 856 7.397221 TCATGTATTGATTGTCAGGAGAACTT 58.603 34.615 0.00 0.00 0.00 2.66
856 857 7.335171 TCATGTATTGATTGTCAGGAGAACTTG 59.665 37.037 0.00 0.00 0.00 3.16
857 858 6.768483 TGTATTGATTGTCAGGAGAACTTGA 58.232 36.000 0.00 0.00 0.00 3.02
858 859 7.223584 TGTATTGATTGTCAGGAGAACTTGAA 58.776 34.615 0.00 0.00 34.08 2.69
859 860 7.719193 TGTATTGATTGTCAGGAGAACTTGAAA 59.281 33.333 0.00 0.00 34.08 2.69
860 861 6.377327 TTGATTGTCAGGAGAACTTGAAAC 57.623 37.500 0.00 0.00 34.08 2.78
861 862 4.511454 TGATTGTCAGGAGAACTTGAAACG 59.489 41.667 0.00 0.00 34.08 3.60
862 863 3.812156 TGTCAGGAGAACTTGAAACGA 57.188 42.857 0.00 0.00 34.08 3.85
863 864 4.131649 TGTCAGGAGAACTTGAAACGAA 57.868 40.909 0.00 0.00 34.08 3.85
864 865 4.119862 TGTCAGGAGAACTTGAAACGAAG 58.880 43.478 0.00 0.00 34.08 3.79
865 866 3.059529 GTCAGGAGAACTTGAAACGAAGC 60.060 47.826 0.00 0.00 34.08 3.86
866 867 2.872245 CAGGAGAACTTGAAACGAAGCA 59.128 45.455 0.00 0.00 0.00 3.91
867 868 3.059325 CAGGAGAACTTGAAACGAAGCAG 60.059 47.826 0.00 0.00 0.00 4.24
868 869 3.131396 GGAGAACTTGAAACGAAGCAGA 58.869 45.455 0.00 0.00 0.00 4.26
869 870 3.185391 GGAGAACTTGAAACGAAGCAGAG 59.815 47.826 0.00 0.00 0.00 3.35
870 871 2.545946 AGAACTTGAAACGAAGCAGAGC 59.454 45.455 0.00 0.00 0.00 4.09
871 872 0.861837 ACTTGAAACGAAGCAGAGCG 59.138 50.000 0.00 0.00 0.00 5.03
872 873 0.861837 CTTGAAACGAAGCAGAGCGT 59.138 50.000 0.00 0.00 43.39 5.07
873 874 0.859232 TTGAAACGAAGCAGAGCGTC 59.141 50.000 0.00 0.00 40.23 5.19
874 875 0.249280 TGAAACGAAGCAGAGCGTCA 60.249 50.000 5.83 0.00 40.23 4.35
875 876 0.859232 GAAACGAAGCAGAGCGTCAA 59.141 50.000 5.83 0.00 40.23 3.18
876 877 1.260561 GAAACGAAGCAGAGCGTCAAA 59.739 47.619 5.83 0.00 40.23 2.69
963 1040 2.231215 CGGGAGCAGGTAATCTTCAG 57.769 55.000 0.00 0.00 0.00 3.02
1519 1603 5.118990 TCTACATTGTTCAGAGCTATTGCC 58.881 41.667 0.00 0.00 40.80 4.52
1549 1634 6.637658 CCATTTGTTGTTTCAATTTGGAATGC 59.362 34.615 0.00 0.00 35.15 3.56
1562 1647 2.589720 TGGAATGCAAGCTATCATGGG 58.410 47.619 0.00 0.00 0.00 4.00
1568 1653 3.634504 TGCAAGCTATCATGGGTTCATT 58.365 40.909 0.00 0.00 0.00 2.57
1710 1795 5.401079 CGGTGTTTTCTTTGTTGCGAAATAT 59.599 36.000 0.00 0.00 0.00 1.28
1779 2106 1.689892 CCCAAGACCTCCTCTAGACCC 60.690 61.905 0.00 0.00 0.00 4.46
1795 2122 1.299648 CCCGATCCAAGCCAGACAA 59.700 57.895 0.00 0.00 0.00 3.18
1805 2144 3.047877 CCAGACAACGGTTCGGCC 61.048 66.667 0.00 0.00 0.00 6.13
1972 2314 2.241281 TCCAACGATACTCCCTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
1989 2331 1.341080 CAAGACCCATTTGCCAACCT 58.659 50.000 0.00 0.00 0.00 3.50
2023 3545 9.780186 ATATTGCTGAAGTTTAACTATAGACCC 57.220 33.333 6.78 0.00 0.00 4.46
2024 3546 6.614694 TGCTGAAGTTTAACTATAGACCCA 57.385 37.500 6.78 0.00 0.00 4.51
2025 3547 7.195374 TGCTGAAGTTTAACTATAGACCCAT 57.805 36.000 6.78 0.00 0.00 4.00
2026 3548 7.630082 TGCTGAAGTTTAACTATAGACCCATT 58.370 34.615 6.78 0.00 0.00 3.16
2027 3549 8.107095 TGCTGAAGTTTAACTATAGACCCATTT 58.893 33.333 6.78 0.00 0.00 2.32
2028 3550 8.398665 GCTGAAGTTTAACTATAGACCCATTTG 58.601 37.037 6.78 0.00 0.00 2.32
2029 3551 9.667107 CTGAAGTTTAACTATAGACCCATTTGA 57.333 33.333 6.78 0.00 0.00 2.69
2133 3655 4.457810 CGATCATCGGTAATGACAAATGC 58.542 43.478 0.00 0.00 47.00 3.56
2138 3660 3.067833 TCGGTAATGACAAATGCGAACA 58.932 40.909 0.00 0.00 0.00 3.18
2152 3675 0.527113 CGAACATCTTGCCATTGCCA 59.473 50.000 0.00 0.00 36.33 4.92
2170 3693 1.985895 CCAACCCTCCAAACTAGACCT 59.014 52.381 0.00 0.00 0.00 3.85
2171 3694 2.375509 CCAACCCTCCAAACTAGACCTT 59.624 50.000 0.00 0.00 0.00 3.50
2172 3695 3.181433 CCAACCCTCCAAACTAGACCTTT 60.181 47.826 0.00 0.00 0.00 3.11
2173 3696 4.470602 CAACCCTCCAAACTAGACCTTTT 58.529 43.478 0.00 0.00 0.00 2.27
2174 3697 4.808767 ACCCTCCAAACTAGACCTTTTT 57.191 40.909 0.00 0.00 0.00 1.94
2175 3698 4.726583 ACCCTCCAAACTAGACCTTTTTC 58.273 43.478 0.00 0.00 0.00 2.29
2176 3699 4.415846 ACCCTCCAAACTAGACCTTTTTCT 59.584 41.667 0.00 0.00 0.00 2.52
2177 3700 5.609708 ACCCTCCAAACTAGACCTTTTTCTA 59.390 40.000 0.00 0.00 0.00 2.10
2179 3702 6.174049 CCTCCAAACTAGACCTTTTTCTAGG 58.826 44.000 11.01 0.00 46.60 3.02
2180 3703 6.013639 CCTCCAAACTAGACCTTTTTCTAGGA 60.014 42.308 11.01 0.53 46.60 2.94
2181 3704 7.005709 TCCAAACTAGACCTTTTTCTAGGAG 57.994 40.000 11.01 2.02 46.60 3.69
2182 3705 6.013639 TCCAAACTAGACCTTTTTCTAGGAGG 60.014 42.308 11.01 9.20 46.60 4.30
2183 3706 6.013639 CCAAACTAGACCTTTTTCTAGGAGGA 60.014 42.308 11.01 0.00 46.60 3.71
2184 3707 6.608539 AACTAGACCTTTTTCTAGGAGGAC 57.391 41.667 11.01 4.05 46.60 3.85
2185 3708 5.024785 ACTAGACCTTTTTCTAGGAGGACC 58.975 45.833 11.01 0.00 46.60 4.46
2186 3709 3.870559 AGACCTTTTTCTAGGAGGACCA 58.129 45.455 0.00 0.00 38.73 4.02
2187 3710 3.841255 AGACCTTTTTCTAGGAGGACCAG 59.159 47.826 0.00 0.00 38.73 4.00
2188 3711 2.306219 ACCTTTTTCTAGGAGGACCAGC 59.694 50.000 0.00 0.00 38.73 4.85
2189 3712 2.356227 CCTTTTTCTAGGAGGACCAGCC 60.356 54.545 0.00 0.00 37.50 4.85
2210 3733 3.447040 GGCTGACTGCTTGCCAAA 58.553 55.556 4.20 0.00 45.46 3.28
2211 3734 1.006922 GGCTGACTGCTTGCCAAAC 60.007 57.895 4.20 0.00 45.46 2.93
2217 3740 0.463654 ACTGCTTGCCAAACTGACGA 60.464 50.000 0.00 0.00 0.00 4.20
2218 3741 0.877071 CTGCTTGCCAAACTGACGAT 59.123 50.000 0.00 0.00 0.00 3.73
2219 3742 0.592637 TGCTTGCCAAACTGACGATG 59.407 50.000 0.00 0.00 0.00 3.84
2260 3804 7.434897 TGTTCAAACTATTTCAAATCAGTGTGC 59.565 33.333 0.00 0.00 0.00 4.57
2294 3875 1.816074 GTTAAAGTGGACCGATGGCA 58.184 50.000 0.00 0.00 0.00 4.92
2308 3889 2.159352 CGATGGCATCATGTTGCTTCAA 60.159 45.455 25.88 11.10 42.38 2.69
2310 3891 3.513680 TGGCATCATGTTGCTTCAATC 57.486 42.857 24.11 10.17 42.38 2.67
2313 3894 3.181469 GGCATCATGTTGCTTCAATCCAT 60.181 43.478 24.11 0.00 42.38 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
408 409 3.758755 CATGCCTAATGTGCTCCTCTA 57.241 47.619 0.00 0.00 0.00 2.43
837 838 5.007626 CGTTTCAAGTTCTCCTGACAATCAA 59.992 40.000 0.00 0.00 0.00 2.57
839 840 4.750098 TCGTTTCAAGTTCTCCTGACAATC 59.250 41.667 0.00 0.00 0.00 2.67
840 841 4.703897 TCGTTTCAAGTTCTCCTGACAAT 58.296 39.130 0.00 0.00 0.00 2.71
841 842 4.131649 TCGTTTCAAGTTCTCCTGACAA 57.868 40.909 0.00 0.00 0.00 3.18
842 843 3.812156 TCGTTTCAAGTTCTCCTGACA 57.188 42.857 0.00 0.00 0.00 3.58
843 844 3.059529 GCTTCGTTTCAAGTTCTCCTGAC 60.060 47.826 0.00 0.00 0.00 3.51
844 845 3.131396 GCTTCGTTTCAAGTTCTCCTGA 58.869 45.455 0.00 0.00 0.00 3.86
845 846 2.872245 TGCTTCGTTTCAAGTTCTCCTG 59.128 45.455 0.00 0.00 0.00 3.86
846 847 3.134458 CTGCTTCGTTTCAAGTTCTCCT 58.866 45.455 0.00 0.00 0.00 3.69
847 848 3.131396 TCTGCTTCGTTTCAAGTTCTCC 58.869 45.455 0.00 0.00 0.00 3.71
848 849 3.363477 GCTCTGCTTCGTTTCAAGTTCTC 60.363 47.826 0.00 0.00 0.00 2.87
849 850 2.545946 GCTCTGCTTCGTTTCAAGTTCT 59.454 45.455 0.00 0.00 0.00 3.01
850 851 2.660362 CGCTCTGCTTCGTTTCAAGTTC 60.660 50.000 0.00 0.00 0.00 3.01
851 852 1.261619 CGCTCTGCTTCGTTTCAAGTT 59.738 47.619 0.00 0.00 0.00 2.66
852 853 0.861837 CGCTCTGCTTCGTTTCAAGT 59.138 50.000 0.00 0.00 0.00 3.16
853 854 0.861837 ACGCTCTGCTTCGTTTCAAG 59.138 50.000 0.00 0.00 35.09 3.02
854 855 0.859232 GACGCTCTGCTTCGTTTCAA 59.141 50.000 0.00 0.00 39.22 2.69
855 856 0.249280 TGACGCTCTGCTTCGTTTCA 60.249 50.000 0.00 0.00 39.22 2.69
856 857 0.859232 TTGACGCTCTGCTTCGTTTC 59.141 50.000 0.00 0.00 39.22 2.78
857 858 1.295792 TTTGACGCTCTGCTTCGTTT 58.704 45.000 0.00 0.00 39.22 3.60
858 859 2.986311 TTTGACGCTCTGCTTCGTT 58.014 47.368 0.00 0.00 39.22 3.85
859 860 4.750460 TTTGACGCTCTGCTTCGT 57.250 50.000 0.00 0.00 42.09 3.85
918 919 1.079503 GCGTCTCACCCTGTTCATTC 58.920 55.000 0.00 0.00 0.00 2.67
919 920 0.687354 AGCGTCTCACCCTGTTCATT 59.313 50.000 0.00 0.00 0.00 2.57
920 921 0.036952 CAGCGTCTCACCCTGTTCAT 60.037 55.000 0.00 0.00 0.00 2.57
921 922 1.367471 CAGCGTCTCACCCTGTTCA 59.633 57.895 0.00 0.00 0.00 3.18
922 923 1.374758 CCAGCGTCTCACCCTGTTC 60.375 63.158 0.00 0.00 0.00 3.18
923 924 2.140792 ACCAGCGTCTCACCCTGTT 61.141 57.895 0.00 0.00 0.00 3.16
924 925 2.524394 ACCAGCGTCTCACCCTGT 60.524 61.111 0.00 0.00 0.00 4.00
925 926 2.047844 CACCAGCGTCTCACCCTG 60.048 66.667 0.00 0.00 0.00 4.45
963 1040 3.272574 TGGAGAGGATCAGCAATGAAC 57.727 47.619 0.00 0.00 37.82 3.18
1519 1603 8.457261 TCCAAATTGAAACAACAAATGGAAAAG 58.543 29.630 0.00 0.00 41.85 2.27
1549 1634 4.641541 TGACAATGAACCCATGATAGCTTG 59.358 41.667 0.00 0.00 32.36 4.01
1562 1647 3.190535 ACCCGTGCTAATTGACAATGAAC 59.809 43.478 0.34 0.00 0.00 3.18
1568 1653 2.301870 AGAAGACCCGTGCTAATTGACA 59.698 45.455 0.00 0.00 0.00 3.58
1686 1771 2.181426 TCGCAACAAAGAAAACACCG 57.819 45.000 0.00 0.00 0.00 4.94
1718 1803 7.310858 GGTTGTAATCCCTAGGTTCTGAGTAAA 60.311 40.741 8.29 0.00 0.00 2.01
1730 2057 3.446161 TCAGACGTGGTTGTAATCCCTAG 59.554 47.826 0.00 0.00 0.00 3.02
1779 2106 1.361668 CCGTTGTCTGGCTTGGATCG 61.362 60.000 0.00 0.00 0.00 3.69
1795 2122 1.474332 TTGGTAGAAGGCCGAACCGT 61.474 55.000 12.31 0.00 46.52 4.83
1805 2144 5.452078 TTCATGGCAAACTTTGGTAGAAG 57.548 39.130 3.69 0.00 0.00 2.85
1913 2255 5.334414 CCTTCCAGTAAATTGAGATATGCGC 60.334 44.000 0.00 0.00 0.00 6.09
1923 2265 6.149474 CAGTGGAGTAACCTTCCAGTAAATTG 59.851 42.308 1.56 0.00 44.61 2.32
1924 2266 6.183361 ACAGTGGAGTAACCTTCCAGTAAATT 60.183 38.462 1.56 0.00 44.61 1.82
1972 2314 0.188342 ACAGGTTGGCAAATGGGTCT 59.812 50.000 15.65 0.26 0.00 3.85
2034 3556 6.150396 TGGGTCTTCTTCGCAAAATAAAAA 57.850 33.333 0.00 0.00 0.00 1.94
2035 3557 5.776173 TGGGTCTTCTTCGCAAAATAAAA 57.224 34.783 0.00 0.00 0.00 1.52
2036 3558 5.975693 ATGGGTCTTCTTCGCAAAATAAA 57.024 34.783 0.00 0.00 0.00 1.40
2037 3559 5.975693 AATGGGTCTTCTTCGCAAAATAA 57.024 34.783 0.00 0.00 0.00 1.40
2038 3560 5.475220 TCAAATGGGTCTTCTTCGCAAAATA 59.525 36.000 0.00 0.00 0.00 1.40
2039 3561 4.280677 TCAAATGGGTCTTCTTCGCAAAAT 59.719 37.500 0.00 0.00 0.00 1.82
2040 3562 3.634448 TCAAATGGGTCTTCTTCGCAAAA 59.366 39.130 0.00 0.00 0.00 2.44
2041 3563 3.218453 TCAAATGGGTCTTCTTCGCAAA 58.782 40.909 0.00 0.00 0.00 3.68
2042 3564 2.857483 TCAAATGGGTCTTCTTCGCAA 58.143 42.857 0.00 0.00 0.00 4.85
2043 3565 2.559698 TCAAATGGGTCTTCTTCGCA 57.440 45.000 0.00 0.00 0.00 5.10
2044 3566 3.691609 AGATTCAAATGGGTCTTCTTCGC 59.308 43.478 0.00 0.00 0.00 4.70
2045 3567 4.437930 GCAGATTCAAATGGGTCTTCTTCG 60.438 45.833 0.00 0.00 0.00 3.79
2046 3568 4.460382 TGCAGATTCAAATGGGTCTTCTTC 59.540 41.667 0.00 0.00 0.00 2.87
2047 3569 4.219288 GTGCAGATTCAAATGGGTCTTCTT 59.781 41.667 0.00 0.00 0.00 2.52
2048 3570 3.760684 GTGCAGATTCAAATGGGTCTTCT 59.239 43.478 0.00 0.00 0.00 2.85
2049 3571 3.119352 GGTGCAGATTCAAATGGGTCTTC 60.119 47.826 0.00 0.00 0.00 2.87
2050 3572 2.827921 GGTGCAGATTCAAATGGGTCTT 59.172 45.455 0.00 0.00 0.00 3.01
2122 3644 3.922240 GCAAGATGTTCGCATTTGTCATT 59.078 39.130 0.00 0.00 38.08 2.57
2124 3646 2.351641 GGCAAGATGTTCGCATTTGTCA 60.352 45.455 0.00 0.00 38.08 3.58
2133 3655 0.527113 TGGCAATGGCAAGATGTTCG 59.473 50.000 7.14 0.00 43.71 3.95
2152 3675 4.808767 AAAAGGTCTAGTTTGGAGGGTT 57.191 40.909 0.00 0.00 0.00 4.11
2170 3693 1.633945 GGGCTGGTCCTCCTAGAAAAA 59.366 52.381 0.00 0.00 34.39 1.94
2171 3694 1.286248 GGGCTGGTCCTCCTAGAAAA 58.714 55.000 0.00 0.00 34.39 2.29
2172 3695 0.118346 TGGGCTGGTCCTCCTAGAAA 59.882 55.000 0.00 0.00 34.39 2.52
2173 3696 0.343372 ATGGGCTGGTCCTCCTAGAA 59.657 55.000 0.00 0.00 34.39 2.10
2174 3697 0.399091 CATGGGCTGGTCCTCCTAGA 60.399 60.000 0.00 0.00 34.39 2.43
2175 3698 1.414061 CCATGGGCTGGTCCTCCTAG 61.414 65.000 2.85 0.00 40.49 3.02
2176 3699 1.384502 CCATGGGCTGGTCCTCCTA 60.385 63.158 2.85 0.00 40.49 2.94
2177 3700 2.693864 CCATGGGCTGGTCCTCCT 60.694 66.667 2.85 0.00 40.49 3.69
2199 3722 0.877071 ATCGTCAGTTTGGCAAGCAG 59.123 50.000 16.52 8.48 0.00 4.24
2201 3724 0.730494 GCATCGTCAGTTTGGCAAGC 60.730 55.000 5.89 5.89 0.00 4.01
2210 3733 4.613925 ATGATATGAAGGCATCGTCAGT 57.386 40.909 0.00 0.00 34.68 3.41
2211 3734 5.120363 CAGAATGATATGAAGGCATCGTCAG 59.880 44.000 0.00 0.00 39.69 3.51
2217 3740 7.341256 AGTTTGAACAGAATGATATGAAGGCAT 59.659 33.333 0.00 0.00 39.69 4.40
2218 3741 6.660521 AGTTTGAACAGAATGATATGAAGGCA 59.339 34.615 0.00 0.00 39.69 4.75
2219 3742 7.093322 AGTTTGAACAGAATGATATGAAGGC 57.907 36.000 0.00 0.00 39.69 4.35
2260 3804 3.004315 ACTTTAACGCACCATGAAACTGG 59.996 43.478 0.00 0.00 42.35 4.00
2294 3875 5.188163 TCCAAATGGATTGAAGCAACATGAT 59.812 36.000 0.00 0.00 41.85 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.