>input_sequence_83643
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------------------------------------ATGCTACGTGCAATTCAGGAAGCAACCAGAATGGGCTGCTGCAA
GGTCGTCTTGGAGACAGACTCAGTTGTATTAAAGCAGGCGATCACAAGCAATGATTATGATGACTCGACACTGGGCGCTC
TATTTAAAGAAATGAAACGTATTATTCAATACTCTTTTCAATGTTGTAAGATAGATGTATGCCCAAGGGCCTGTAATGTA
TCAGCACATGTGTTAGCTGCGTATGGTGTGAGTCTGGAGCAGGCAAGCTATCAAATTTGGCTTGACCCGCTTCCTGATTA
TGTACAAGACTTGGTTGCTGGGGTTTCTCCAGCTCTCTTGAATTAA----------------------------------
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>chr2A_1_TraesCS2A01G201500
ATATCCTACTGTTGGAGGAGCATCTTAAAAGGGGTACAGGTGCTAAAGAGCGGGGTGGTGTGGAGAGTAGGAGATGGAGA
AAGTATAAATATTTGGACTGATCATTGGCTCCCAAAGGGAAAATCAAGGCTGGTCAGTTCAAGGAGGGGAAATCAAATCA
TAACAAAAGTCGCAGAGTTGATTGACCCATCCTCCTACACTTGGGATGAGGAACTTGTACGACAAACCTTTAATGAAGAA
GATGCCCGGGCAATTCTTCAAATCCCAATACATGAAGGGCAAGAGGACTATGTGGCGTGGCATTTTGACAAAAAAGGGAA
GTTCTCAGTAAAATCAGCATATCAAGTAGTGCTTGAGAGTCAAGCAAGGGAATCAGATAAAAGCATCCCTTCTACTTCTT
ACTGCCCTTAGAGGAGCACATTAGGCATGTGGAAGAACCTATGGGCCCTACCACTGGCAGGGAAAATTTTACACTTTTTA
TGGCGACTAGCAAACAATAGCCTCCCGCTCAGAATGAAGATCAAGAGAAGAGGCATAGAACTAGATACAAGATGCCCGGT
ATGTCTTAGAATGGATGAAGATGGGGGCCATTGCTTTCTAAAGTGCAAATCAGTTAAGGCTCTATGGAGAGCAGCTCAAC
TGGAAGACACACGTGAATTACTAGTTAACTGTCCAAATGCTAATTCTGTGATGCAGGAAATACTCAAACAGGATGAAGAT
ACTTGCATAAGGACATGTGTTTTGCTATGGACCTGGTGGGGTGAGAGAAACAAAGCAAATCAGGGAAACAAGATGCGAAG
CCTAGAGGAGATATATCACTCTTATCAGCTTCATGTATTGATTGTCAGGAGAACTTGAAACGAAGCAGAGCGTCAAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATGAAC----------------------------------
------------------------------------------AGGGTGAGACGCTGGTGGCGGGAGCAGGTAATCTTCAG
TTCATTGCTGATCCTCTCCATGCAGAAGCTACTGCAATGCTACGTGCAATTCAGGAAGCAACCAGAATGGGCTGCTGCAA
GGTCGTCTTGGAGACAGACTCAGTTGTATTAAAGCAGGCGATCACAAGCAATGATTATGATGACTCGACACTGGGCGCTC
TATTTAAAGAAATGAAACGTATTATTCAATACTCTTTTCAATGTTGTAAGATAGATGTATGCCCAAGGGCCTGTAATGTA
TCAGCACATGTGTTAGCTGCGTATGGTGTGAGTCTGGAGCAGGCAAGCTATCAAATTTGGCTTGACCCGCTTCCTGATTA
TGTACAAGACTTGGTTGCTGGGGTTTCTCCAGCTCTCTTGAATTAATGGAATGCGCTGGTGTTCCTTTCAAAAAAAAAAA
AGTATTGGTAATTGTGTCGTACACTGAAGTACCTTCTACACCCAATTCTCAGAGGATGTAGATTGGCACATCTATTTTGG
AAGGATCATAGTTAGACATATCCAGAAAA-AAATAGCCTGATTCTA------CTGTTTTTCTACATTGTTCAGAGCTATT
GCC-TTTTCCATTTGTTGTTTCAATTTGGAATGCAAGCTATCATGGGTTCATTGTCAATTAGCACGGGTCTTCTAAGTGA
ACTATTCATAATCATGGCCCTATTATCTATGATGAACATTTGCAATTTTTACTAATTTGAGTTCATGTTGATACCATACT
TTGGAATCCACGGTGTTTTCTTTGTTGCGAAATATTTTTTGTTTTACTCAGAAC--------------------------
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--------------------------------------------------------CTAGGGATTACAACCACGTCTGAC
AACGCCCCAAGACCTCCTCTAGACCCGATCCAAGCCAGACAACGGTTCGGC------------CTTCTACCAAAGTTTGC
CATGAAATGA--CTAGCACATTTTTTACTAGGACGGATATGAATAATACTACAAGAACTAGATTCCTCTATACTATCTTA
TCTGAT-AAAAAAAGCGCATATCTCAATTTACTGGAAGGTTACTCCACTGTAAATCCAACGATACTCCCTCCAAGACCCA
TTTGCCAACCTGTAAG----------------------------------------------------------------
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----------------------------------------------------------------------------TAAT
ATTGCTGAAGTTTAACTATAGACCCATTTGAATCTTTTTTATTTTGCGAAGAAGACCCATTTGAATCTGCACCTTCCTTT
GCTCGAAATCAAACCTCCTGTAGGCTCGCGAGCGATCATCGGTAATGACAAATGCGAACATCTTG-CCATTGCCAACCCT
CCAAACTAGACCTTTTTCTAGGAGGACCAGCCCATGGCTGACTGCTTGCCAAACTGACGATG------------------
---CCTTCATATCATTCTGTTCAAACTATTTCAAATCAGTGTGCCA----------------------------------
---GTTTCATGGTGCGTTAAAGTGGACCGATGGCATCATGTTGCTTCAATCCATTTGGACTACCACCATT
>chr6A_1
ATATCCTACTGTTGGAGGAGCATCTTAAAAGGGGTACAGGTGCTAAAGAGCGGGGTGGTGTGGAGAGTAGGAGATGGAGA
AAGTATAAATATTTGGACTGATCATTGGCTCCCAAAGGGAAAATCAAGGCTGGTCAGTTCAAGGAGGGGAAATCAAATCA
TAACAAAAGTCGCAGAGTTGATTGACCCATCCTCCTACACTTGGGATGAGGAACTTGTACGACAAACCTTTAATGAAGAA
GATGCCCGGGCAATTCTTCAAATCCCAATACATGAAGGGCAAGAGGACTATGTGGCGTGGCATTTTGACAAAAAAGGGAA
GTTCTCAGTAAAATCAGCATATCAAGTAGTGCTTGAGAGTCAAGCAAGGGAATCAGATAAAAGCATCCCTTCTACTTCTT
ACTGCCCTGAGAGGAGCACATTAGGCATGTGGAAGAACCTATGGGCCCTACCACTGGCAGGGAAAATTTTACACTTTTTA
TGGCGACTAGCAAACAATAGCCTCCCGCTCAGAATGAAGATCAAGAGAAGAGGCATAGAACTAGATACAAGATGCCCGGT
ATGTCTTAGAATGGATGAAGATGGGGGCCATTGCTTTCTAAAGTGCAAATCAGTTAAGGCTCTATGGAGAGCAGCTCAAC
TGGAAGACACACGTGAATTACTAGTTAACTGTCCAAATGCTAATTCTGTGATGCAGGAAATACTCAAACAGGATGAAGAT
ACTTGCATAAGGACATGTGTTTTGCTATGGACCTGGTGGGGTGAGAGAAACAAAGCAAATCAGGGAAACAAGATGCGAAG
CCTAGAGGAGATATATCACTCTTATCAGCTTCATGTAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGATAAATTCTGATGGGGCTTTTAGACAGT
CAACTCACTTGGGAGGATGGGGTTTTACCATCAAGAATGAAGAGGGTGAGACGCTGGTGGCGGGAGCAGGTAATCTTCAA
TTCATTGCTGATCCTCTCCATGCAGAAGCTACTGCAATGCTACGTGCAATTCAGGAAGCAACCAGAATGGGCTGCTGCAA
GGTCGTCTTGGAGACAGACTCAGTTGTATTAAAGCAGGCGATCACAAGCAATGATTATGATGACTCGACACTGGGCGCTC
TATTTAAAGAAATGAAACGTATTATTCAATACTCTTTTCAATGTTGTAAGATAGATGTATGCCCAAGGGCCTGTAATGTA
TCAGCACATGTGTTAGCTGCGTATGGTGTGAGTCTGGAGCAGGCAAGCTATCAAATTTGGCTTGACCCGCTTCCTGATTA
TGTACAAGACTTGGTTGCTGGGGTTTCTCCAGCTCTCTTGAATTAATGGAATGCGCTGGTGTTCCTTTCAAAAAAAAAA-
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>chr2B_1364
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-------------------------------------------------------------------------------A
AGTATTGATAATCGTGTCGTACAGTGCAGTACCTTCTACACCCAATTCGCAGACGATGTAGATTGGCGCATCTATTTTGG
AAGGATCGTAGTTAAACATATCCAGAAAAGAAATAGCCCGATTCTA------CAGTTTTTCTACATTGTTCAGAGCTATT
GCTTTTTTCCATTTGTTGTTTCAATTTGGAATGTAAGCTATCATGGTTTCATGGTCAATTAGCATGGGTCTTCTAAGTGA
ACTATTCTTAATCATGGCCCTATTATCTATGATGATCATTTGCAATTTCTACTAATTTGAGTAAATGTTGATATCATACT
TTCGAATCCATGGTGTTTTCTTTGTTACGAAATAATTTTTGTGCTACTCAGAAC--------------------------
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--------------------------------------------------------GTAGGGATTACAATCACGTTTGAC
AACGCCCCAAGACATCCTCTAGACCAGATCCAAGCCAGACAGCGATTCGGC------------TTTCTAACAAAATTCGC
CATGAAATTGTGCTAGCACAATTTTTACTAGGACGGATATGAATAAC---ACAAGAACCACATTCCTCCAAACTATCTTC
TCTGATAAAAAAAAACGCATATCTTGACTTACTGGAAGGTTACTTTGCTGTAAATCCAACGATAGTCCCTCCATGACCCA
TTTGCCAACCGGCCG-----------------------------------------------------------------
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----------------------------------------------------AGACCCATTTGAATCTGCACCTTCATTT
GCTCGAAACCAAACCTCCTGTAGGCTCGCGAGCGATCATCGGTCACGACAAATGTGAACGTCTTGCCCATTGCCGACCCT
CCAAACTAGACC--------------------CATGGCTGATTCCTTGCCAAGTTGACGTGTAAACTGTGTCTTCTGGTC
TGCCCTTCATATCATTCTGTTCAAACTATTTCAAATCAGTGTGTCAGTTTCATGGTGCGTTATCCCGCAAAAGAAAAAAA
AAGGTTTCATGGTGCGTTAAAGTGGACCGATGGCGTCATGTTGCTTCAGTTCAGTTGGACTACCACCATT
>chr2D_1364
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-------------------------------------------------------------------------------A
AGTATTGGTAATTGTGTCGTACACTGAAGTACCTTCTACACCCAATTCTCAGAGGATGTAGATTGGCACATCTATTTTGG
AAGGATCATAGTTAGACATACAG---AAAGAAATAGCCTGATTCTAGTTCTACTGTTTTTCTACATCGTTCAGAGCTATT
GCTTTTTTCCATTTGTTGTTTCAGTTTGGAAGGTAAGCTAACATGGATTCACGGTCAATTAGCACGGGTCTTCTAAGTGA
ACTATTCATAATCATGGCCCTATTATCTGTGATGAACATTTGCAATTGCTACTAATTTTAGTTTGTGTTGATATCATACT
TTGGAATCCGTGGTGTTTTCTTTGTTGCGAAATAATTTTTGTGTTGCTCAGAACGTACTACCTCCATCCTGGTTTATTGG
GCCTTCTAATATTTTGTGCCAGATTTTGACCCTAAATTTAACTAGCAAAATATCAATGCGTGTTAATAAAAATTACATCG
TTGGATTCGTATTTGAACATAGTTTCTAGTGATATTATTTTTTACAACATGCATTGACATTTTATTAGTTAAATCTATGA
TCAAAATTTGACACTAAATACGAAAGGAACCAATAAACCAAGACGGAGAGGAGATAGTAGGGATTACAACCACGTCTGAC
AAGGCCCCAAGACCTCCTCTAGACCTGATCCAAGCCAGACAGCGGTTCAGCCTTCTACTAAAGTTTCTACCAAAGTTTGC
CATGAAATGAT--TAGCATATTTTTTACTAGGACAGATATGAATAA---TACAAGAACTACATTCCTCTATACTATCTTC
TCTGATAAAA---AACGCATATCTTGATTTACTGGAAGGCTACTCCACTGTAAATCCACCGATACTCCCTCCATTACCCA
TCTGCCAACCGGTAAGTAAGAGCAACTCCAACACATGGACCCGACACATATTTTGTTTGTTTTTTTGTCTGTTTGGGTCA
CTCGTCCGCTTAACAGACATGCGACGGACACGCGAGGACGATAGATACACCCAACGCAAAGACATGCGGCGGACCCATTT
GTTGCCTCTGCGGCTGGTTCCGCCGGCGAAGCAAGCGCCCGTGCAGCTCGAGCAGGAAGCAGCGGGGCTAGAGTGGACGG
GCGCGGCCCGAAGCATGGCCAGAAGCTCGAGAGCGGGCGCGGCCAGGAGCACGGCCGAGCGCTCAAGAGCAGGCGCGGCC
GGGCGCGGCCCGAGGTGCGGCCAGAAGCTCGGAGCGTGACCGGGTGAGCTCCCCGCAGCGCGTCTGGACGACCTTGGAGG
TCAAGGAGCGGCTCTCGGTCGTAGAGTTCGACTGGCGGCGCACGAGGGAGTAGGCCCCGGCGGTGACGAGCAGCATGGCG
CCGCTGTCCCCACAGCAACATGGACGCGGCCGGCACAGAGGACGAGGCCGCCAACACCCCCGCGACGCCCCGCACGCCGG
TGGCGACGACCCACCGCCTCGGCCTCCGGTGCCCCGGGGCGTGGAGAGGTCCGGGGCGAAGACGGAGCGCGAGAGCAACT
AGGAGGTCGAGGAGAAGGAGAGCGCCGAAGAGAGGGAGGGTTGCGCACCCGTGAAGCCGGCAGGCGAGCGGGCTGGTGAC
GAGGCGTGCAGAGCTGGCGCGCGGCAAGCTGGGGAGGCCGGGTACGACCAGGCAAGAGGACGGCCGGGCGGCACAGCGAC
GTGCGCGGGGCCTAGCGCGCGAGGGCAAAGCGGCGTGGGGGAGGCGAGGCACGGGGGGCAGGCCAGCGCCGCTCCAGCTC
TCGAGCGGGGTGAGCGGGTGGGTGGGAGAAGAGAGAGGAAAAGGAGAAGAGAGATGAGATGGGACGGGTGGGTGGATGGC
AAGTGGGCCAAGCGGCACATGCAACCGGACAGAGGCGGACGAAGAAGGCACGGAGAACGTTCACTTTGTGTCCGCTTTTG
ACCCAATTGTGCCTCAAGTTTGGGCTGGATATGAGTCTGAACGGACACAAAACGGACAGCAGACGAACGCAGTGTGCGTT
TGGGTCGCCCTGTTGGATCGTGTTTATGTCCGGACAACCCAAACGGATAAAATGGGTCACCCGGTTGGAGTTGCTATAAT
ATTGCTGAAGTTTAACTAT---------------------------------AGACCCATTTGAATCTGCACCTTCCTTT
GCTCGAAATCAAACCTCCTATAG---------------------------------------------------------
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>SNPs
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--------S-----------------------------------------------------------------------
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-------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
--------------------------------------SSSSSSSS----------------------------------
-------------------------------------------------------------------------------S
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--S------------------------------S------------S-----S---------------------------
------------------------------------------------S--------------S---------S------
----------S-----------------------S-------S-------------------------------------
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--------------------------------------------------------S-----------------------
-------------------------S---------------S---------------------S----------------
----------------------------------------------SSS-----------S------------------S
--------------S---------SS-----------------------------------------------S------
----------S---------------------------------------------------------------------
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-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
-------------------------------------------S-S--------S----S--------------S-----
------------SSSSSSSSSSSSSSSSSSSS---------S-S--------SS-----SSS------------------
-------------------------------------------S------------------------------------
----------------------------------S-------------S-S--S----------------
>forward_875
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-------------------------------------------------------TGAAACGAAGCAGAGCGTCA-----
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>reverse_3695
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--------------TTTCTAGGAGGACCAGCCCA----------------------------------------------
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