Multiple sequence alignment - TraesCS2A01G199300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G199300 chr2A 100.000 3043 0 0 1 3043 171947414 171950456 0.000000e+00 5620.0
1 TraesCS2A01G199300 chr2A 82.707 133 16 5 319 451 681085350 681085225 8.920000e-21 111.0
2 TraesCS2A01G199300 chr2B 92.663 2358 87 33 474 2799 217396342 217398645 0.000000e+00 3317.0
3 TraesCS2A01G199300 chr2B 88.757 169 10 2 2853 3019 217398720 217398881 6.650000e-47 198.0
4 TraesCS2A01G199300 chr2D 91.783 2361 84 37 474 2799 160597640 160599925 0.000000e+00 3184.0
5 TraesCS2A01G199300 chr2D 93.491 169 9 1 2853 3019 160600031 160600199 1.810000e-62 250.0
6 TraesCS2A01G199300 chr7A 85.185 135 16 3 1 134 664964353 664964222 5.290000e-28 135.0
7 TraesCS2A01G199300 chr7A 80.833 120 21 2 320 439 43251625 43251508 3.230000e-15 93.5
8 TraesCS2A01G199300 chr3B 85.950 121 16 1 319 439 783149760 783149641 8.860000e-26 128.0
9 TraesCS2A01G199300 chr6B 85.714 119 17 0 319 437 207464004 207463886 3.190000e-25 126.0
10 TraesCS2A01G199300 chr4D 78.974 195 27 8 1 191 97451595 97451779 1.480000e-23 121.0
11 TraesCS2A01G199300 chr1D 85.000 120 15 3 320 439 63377459 63377343 5.330000e-23 119.0
12 TraesCS2A01G199300 chr1D 86.301 73 9 1 319 390 334468993 334468921 9.050000e-11 78.7
13 TraesCS2A01G199300 chr6A 82.609 138 19 2 319 456 529027219 529027087 1.920000e-22 117.0
14 TraesCS2A01G199300 chr4B 84.956 113 13 4 1 113 139324586 139324694 8.920000e-21 111.0
15 TraesCS2A01G199300 chr3A 81.746 126 19 4 315 439 118584189 118584067 5.370000e-18 102.0
16 TraesCS2A01G199300 chr3A 97.059 34 1 0 1 34 215494829 215494796 1.180000e-04 58.4
17 TraesCS2A01G199300 chr1A 85.556 90 11 2 315 402 461352326 461352415 3.230000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G199300 chr2A 171947414 171950456 3042 False 5620.0 5620 100.000 1 3043 1 chr2A.!!$F1 3042
1 TraesCS2A01G199300 chr2B 217396342 217398881 2539 False 1757.5 3317 90.710 474 3019 2 chr2B.!!$F1 2545
2 TraesCS2A01G199300 chr2D 160597640 160600199 2559 False 1717.0 3184 92.637 474 3019 2 chr2D.!!$F1 2545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.038166 GCCAAATGTCTCCTCCCACA 59.962 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2090 0.106521 GATCAAGGAGGAGGAGCAGC 59.893 60.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.285371 TCTTCCTCGCCGAAGACC 58.715 61.111 9.23 0.00 42.58 3.85
18 19 2.202623 CTTCCTCGCCGAAGACCG 60.203 66.667 5.63 0.00 41.57 4.79
19 20 4.430765 TTCCTCGCCGAAGACCGC 62.431 66.667 0.00 0.00 36.84 5.68
22 23 4.421479 CTCGCCGAAGACCGCACT 62.421 66.667 0.00 0.00 36.84 4.40
23 24 3.916392 CTCGCCGAAGACCGCACTT 62.916 63.158 0.00 0.00 36.84 3.16
24 25 3.041940 CGCCGAAGACCGCACTTT 61.042 61.111 0.00 0.00 36.84 2.66
25 26 2.861006 GCCGAAGACCGCACTTTC 59.139 61.111 0.00 0.00 36.84 2.62
26 27 1.959226 GCCGAAGACCGCACTTTCA 60.959 57.895 0.00 0.00 36.84 2.69
27 28 1.860078 CCGAAGACCGCACTTTCAC 59.140 57.895 0.00 0.00 36.84 3.18
28 29 0.600255 CCGAAGACCGCACTTTCACT 60.600 55.000 0.00 0.00 36.84 3.41
29 30 1.217882 CGAAGACCGCACTTTCACTT 58.782 50.000 0.00 0.00 0.00 3.16
30 31 1.192534 CGAAGACCGCACTTTCACTTC 59.807 52.381 0.00 0.00 0.00 3.01
31 32 2.210116 GAAGACCGCACTTTCACTTCA 58.790 47.619 0.00 0.00 35.38 3.02
32 33 1.583054 AGACCGCACTTTCACTTCAC 58.417 50.000 0.00 0.00 0.00 3.18
33 34 0.232303 GACCGCACTTTCACTTCACG 59.768 55.000 0.00 0.00 0.00 4.35
34 35 1.157870 ACCGCACTTTCACTTCACGG 61.158 55.000 0.00 0.00 44.49 4.94
35 36 1.569493 CGCACTTTCACTTCACGGG 59.431 57.895 0.00 0.00 0.00 5.28
36 37 1.157870 CGCACTTTCACTTCACGGGT 61.158 55.000 0.00 0.00 0.00 5.28
37 38 0.586802 GCACTTTCACTTCACGGGTC 59.413 55.000 0.00 0.00 0.00 4.46
38 39 1.810412 GCACTTTCACTTCACGGGTCT 60.810 52.381 0.00 0.00 0.00 3.85
39 40 2.561569 CACTTTCACTTCACGGGTCTT 58.438 47.619 0.00 0.00 0.00 3.01
40 41 3.724374 CACTTTCACTTCACGGGTCTTA 58.276 45.455 0.00 0.00 0.00 2.10
41 42 4.124238 CACTTTCACTTCACGGGTCTTAA 58.876 43.478 0.00 0.00 0.00 1.85
42 43 4.573201 CACTTTCACTTCACGGGTCTTAAA 59.427 41.667 0.00 0.00 0.00 1.52
43 44 4.573607 ACTTTCACTTCACGGGTCTTAAAC 59.426 41.667 0.00 0.00 0.00 2.01
49 50 1.270550 TCACGGGTCTTAAACCTCGTC 59.729 52.381 14.24 0.00 45.76 4.20
50 51 0.242017 ACGGGTCTTAAACCTCGTCG 59.758 55.000 12.69 0.00 45.76 5.12
51 52 3.669032 ACGGGTCTTAAACCTCGTCGC 62.669 57.143 12.69 0.00 45.76 5.19
52 53 3.808583 GGTCTTAAACCTCGTCGCT 57.191 52.632 0.00 0.00 45.45 4.93
53 54 1.347320 GGTCTTAAACCTCGTCGCTG 58.653 55.000 0.00 0.00 45.45 5.18
54 55 1.336609 GGTCTTAAACCTCGTCGCTGT 60.337 52.381 0.00 0.00 45.45 4.40
55 56 2.401351 GTCTTAAACCTCGTCGCTGTT 58.599 47.619 0.00 0.00 0.00 3.16
56 57 2.407696 GTCTTAAACCTCGTCGCTGTTC 59.592 50.000 0.65 0.00 0.00 3.18
57 58 2.034939 TCTTAAACCTCGTCGCTGTTCA 59.965 45.455 0.65 0.00 0.00 3.18
58 59 2.736144 TAAACCTCGTCGCTGTTCAT 57.264 45.000 0.65 0.00 0.00 2.57
59 60 1.148310 AAACCTCGTCGCTGTTCATG 58.852 50.000 0.65 0.00 0.00 3.07
60 61 0.670546 AACCTCGTCGCTGTTCATGG 60.671 55.000 0.00 0.00 0.00 3.66
61 62 1.215382 CCTCGTCGCTGTTCATGGA 59.785 57.895 0.00 0.00 0.00 3.41
62 63 0.803768 CCTCGTCGCTGTTCATGGAG 60.804 60.000 0.00 0.00 0.00 3.86
63 64 0.171231 CTCGTCGCTGTTCATGGAGA 59.829 55.000 0.00 0.00 0.00 3.71
64 65 0.817654 TCGTCGCTGTTCATGGAGAT 59.182 50.000 0.00 0.00 0.00 2.75
65 66 2.021457 TCGTCGCTGTTCATGGAGATA 58.979 47.619 0.00 0.00 0.00 1.98
66 67 2.425668 TCGTCGCTGTTCATGGAGATAA 59.574 45.455 0.00 0.00 0.00 1.75
67 68 2.535984 CGTCGCTGTTCATGGAGATAAC 59.464 50.000 0.00 0.00 0.00 1.89
68 69 3.521560 GTCGCTGTTCATGGAGATAACA 58.478 45.455 0.00 0.00 0.00 2.41
76 77 7.186570 TGTTCATGGAGATAACAGATGAAGA 57.813 36.000 0.00 0.00 34.53 2.87
77 78 7.623630 TGTTCATGGAGATAACAGATGAAGAA 58.376 34.615 0.00 0.00 34.53 2.52
78 79 7.550551 TGTTCATGGAGATAACAGATGAAGAAC 59.449 37.037 0.00 0.00 34.53 3.01
79 80 6.276091 TCATGGAGATAACAGATGAAGAACG 58.724 40.000 0.00 0.00 0.00 3.95
80 81 5.661056 TGGAGATAACAGATGAAGAACGT 57.339 39.130 0.00 0.00 0.00 3.99
81 82 5.410924 TGGAGATAACAGATGAAGAACGTG 58.589 41.667 0.00 0.00 0.00 4.49
82 83 4.806247 GGAGATAACAGATGAAGAACGTGG 59.194 45.833 0.00 0.00 0.00 4.94
83 84 5.407407 AGATAACAGATGAAGAACGTGGT 57.593 39.130 0.00 0.00 0.00 4.16
84 85 5.411781 AGATAACAGATGAAGAACGTGGTC 58.588 41.667 0.00 0.00 0.00 4.02
85 86 2.065993 ACAGATGAAGAACGTGGTCG 57.934 50.000 0.00 0.00 43.34 4.79
86 87 0.716108 CAGATGAAGAACGTGGTCGC 59.284 55.000 0.00 0.00 41.18 5.19
87 88 0.389948 AGATGAAGAACGTGGTCGCC 60.390 55.000 0.00 0.00 41.18 5.54
88 89 1.683790 GATGAAGAACGTGGTCGCCG 61.684 60.000 0.00 0.00 41.18 6.46
89 90 3.110178 GAAGAACGTGGTCGCCGG 61.110 66.667 0.00 0.00 41.18 6.13
90 91 3.853597 GAAGAACGTGGTCGCCGGT 62.854 63.158 1.90 0.00 41.18 5.28
91 92 4.657824 AGAACGTGGTCGCCGGTG 62.658 66.667 9.28 9.28 41.18 4.94
105 106 3.146783 CGGTGCGGAATACAAAGGA 57.853 52.632 0.00 0.00 0.00 3.36
106 107 1.444836 CGGTGCGGAATACAAAGGAA 58.555 50.000 0.00 0.00 0.00 3.36
107 108 1.396996 CGGTGCGGAATACAAAGGAAG 59.603 52.381 0.00 0.00 0.00 3.46
108 109 2.433436 GGTGCGGAATACAAAGGAAGT 58.567 47.619 0.00 0.00 0.00 3.01
109 110 2.161609 GGTGCGGAATACAAAGGAAGTG 59.838 50.000 0.00 0.00 0.00 3.16
110 111 2.161609 GTGCGGAATACAAAGGAAGTGG 59.838 50.000 0.00 0.00 0.00 4.00
111 112 2.039216 TGCGGAATACAAAGGAAGTGGA 59.961 45.455 0.00 0.00 0.00 4.02
112 113 2.418976 GCGGAATACAAAGGAAGTGGAC 59.581 50.000 0.00 0.00 0.00 4.02
113 114 2.671396 CGGAATACAAAGGAAGTGGACG 59.329 50.000 0.00 0.00 0.00 4.79
114 115 3.615592 CGGAATACAAAGGAAGTGGACGA 60.616 47.826 0.00 0.00 0.00 4.20
115 116 4.514401 GGAATACAAAGGAAGTGGACGAT 58.486 43.478 0.00 0.00 0.00 3.73
116 117 4.332819 GGAATACAAAGGAAGTGGACGATG 59.667 45.833 0.00 0.00 0.00 3.84
117 118 2.185004 ACAAAGGAAGTGGACGATGG 57.815 50.000 0.00 0.00 0.00 3.51
118 119 1.271379 ACAAAGGAAGTGGACGATGGG 60.271 52.381 0.00 0.00 0.00 4.00
119 120 1.064825 AAAGGAAGTGGACGATGGGT 58.935 50.000 0.00 0.00 0.00 4.51
120 121 1.946984 AAGGAAGTGGACGATGGGTA 58.053 50.000 0.00 0.00 0.00 3.69
121 122 1.192428 AGGAAGTGGACGATGGGTAC 58.808 55.000 0.00 0.00 0.00 3.34
135 136 0.038801 GGGTACCGCCGTAAGATAGC 60.039 60.000 5.65 0.00 40.86 2.97
136 137 0.957362 GGTACCGCCGTAAGATAGCT 59.043 55.000 0.00 0.00 43.02 3.32
137 138 1.339291 GGTACCGCCGTAAGATAGCTT 59.661 52.381 0.00 0.00 43.02 3.74
138 139 2.223900 GGTACCGCCGTAAGATAGCTTT 60.224 50.000 0.00 0.00 43.02 3.51
139 140 3.004734 GGTACCGCCGTAAGATAGCTTTA 59.995 47.826 0.00 0.00 43.02 1.85
140 141 3.366440 ACCGCCGTAAGATAGCTTTAG 57.634 47.619 0.00 0.00 43.02 1.85
141 142 2.035576 ACCGCCGTAAGATAGCTTTAGG 59.964 50.000 0.00 4.16 43.02 2.69
142 143 2.609737 CCGCCGTAAGATAGCTTTAGGG 60.610 54.545 13.63 9.93 43.02 3.53
143 144 2.035576 CGCCGTAAGATAGCTTTAGGGT 59.964 50.000 14.00 0.00 43.02 4.34
144 145 3.651206 GCCGTAAGATAGCTTTAGGGTC 58.349 50.000 14.00 5.97 43.02 4.46
145 146 3.856267 GCCGTAAGATAGCTTTAGGGTCG 60.856 52.174 14.00 3.54 43.02 4.79
146 147 3.305199 CCGTAAGATAGCTTTAGGGTCGG 60.305 52.174 0.00 1.26 43.02 4.79
147 148 3.567164 CGTAAGATAGCTTTAGGGTCGGA 59.433 47.826 0.00 0.00 43.02 4.55
148 149 4.556302 CGTAAGATAGCTTTAGGGTCGGAC 60.556 50.000 0.00 0.00 43.02 4.79
149 150 2.317973 AGATAGCTTTAGGGTCGGACC 58.682 52.381 19.06 19.06 37.60 4.46
150 151 5.237304 TAAGATAGCTTTAGGGTCGGACCC 61.237 50.000 34.42 34.42 45.92 4.46
151 152 7.645185 TAAGATAGCTTTAGGGTCGGACCCA 62.645 48.000 39.92 26.08 46.94 4.51
152 153 8.860966 TAAGATAGCTTTAGGGTCGGACCCAT 62.861 46.154 39.92 28.34 46.94 4.00
160 161 1.324383 GGTCGGACCCATTTGTTTGT 58.676 50.000 16.55 0.00 30.04 2.83
161 162 1.268625 GGTCGGACCCATTTGTTTGTC 59.731 52.381 16.55 0.00 30.04 3.18
162 163 1.268625 GTCGGACCCATTTGTTTGTCC 59.731 52.381 0.00 0.00 43.07 4.02
163 164 1.144093 TCGGACCCATTTGTTTGTCCT 59.856 47.619 6.03 0.00 44.08 3.85
164 165 2.372504 TCGGACCCATTTGTTTGTCCTA 59.627 45.455 6.03 0.00 44.08 2.94
165 166 3.150767 CGGACCCATTTGTTTGTCCTAA 58.849 45.455 6.03 0.00 44.08 2.69
166 167 3.570550 CGGACCCATTTGTTTGTCCTAAA 59.429 43.478 6.03 0.00 44.08 1.85
167 168 4.219725 CGGACCCATTTGTTTGTCCTAAAT 59.780 41.667 6.03 0.00 44.08 1.40
168 169 5.478407 GGACCCATTTGTTTGTCCTAAATG 58.522 41.667 0.00 0.00 43.16 2.32
169 170 5.011635 GGACCCATTTGTTTGTCCTAAATGT 59.988 40.000 0.00 0.00 43.16 2.71
170 171 6.463755 GGACCCATTTGTTTGTCCTAAATGTT 60.464 38.462 0.00 0.00 43.16 2.71
171 172 6.521162 ACCCATTTGTTTGTCCTAAATGTTC 58.479 36.000 0.00 0.00 39.14 3.18
172 173 6.098982 ACCCATTTGTTTGTCCTAAATGTTCA 59.901 34.615 0.00 0.00 39.14 3.18
173 174 6.989169 CCCATTTGTTTGTCCTAAATGTTCAA 59.011 34.615 0.00 0.00 39.14 2.69
174 175 7.497249 CCCATTTGTTTGTCCTAAATGTTCAAA 59.503 33.333 0.00 0.00 39.14 2.69
175 176 8.887717 CCATTTGTTTGTCCTAAATGTTCAAAA 58.112 29.630 0.00 0.00 39.14 2.44
178 179 9.442047 TTTGTTTGTCCTAAATGTTCAAAATGT 57.558 25.926 0.00 0.00 31.45 2.71
180 181 9.522804 TGTTTGTCCTAAATGTTCAAAATGTAC 57.477 29.630 0.00 0.00 31.45 2.90
181 182 9.744468 GTTTGTCCTAAATGTTCAAAATGTACT 57.256 29.630 0.00 0.00 31.45 2.73
182 183 9.743057 TTTGTCCTAAATGTTCAAAATGTACTG 57.257 29.630 0.00 0.00 0.00 2.74
183 184 8.684386 TGTCCTAAATGTTCAAAATGTACTGA 57.316 30.769 0.00 0.00 0.00 3.41
184 185 9.126151 TGTCCTAAATGTTCAAAATGTACTGAA 57.874 29.630 0.00 0.00 0.00 3.02
185 186 9.959749 GTCCTAAATGTTCAAAATGTACTGAAA 57.040 29.630 0.00 0.00 33.52 2.69
218 219 9.737427 TGTAATGTAATGAATTTCGTTTTGTGT 57.263 25.926 9.05 0.00 0.00 3.72
231 232 9.702726 ATTTCGTTTTGTGTATATGAAGATTCG 57.297 29.630 0.00 0.00 0.00 3.34
232 233 6.701937 TCGTTTTGTGTATATGAAGATTCGC 58.298 36.000 0.00 0.00 0.00 4.70
233 234 5.901884 CGTTTTGTGTATATGAAGATTCGCC 59.098 40.000 0.00 0.00 0.00 5.54
234 235 6.456315 CGTTTTGTGTATATGAAGATTCGCCA 60.456 38.462 0.00 0.00 0.00 5.69
235 236 7.417612 GTTTTGTGTATATGAAGATTCGCCAT 58.582 34.615 0.00 0.00 0.00 4.40
236 237 7.566760 TTTGTGTATATGAAGATTCGCCATT 57.433 32.000 0.00 0.00 0.00 3.16
237 238 7.566760 TTGTGTATATGAAGATTCGCCATTT 57.433 32.000 0.00 0.00 0.00 2.32
238 239 7.566760 TGTGTATATGAAGATTCGCCATTTT 57.433 32.000 0.00 0.00 0.00 1.82
239 240 7.995289 TGTGTATATGAAGATTCGCCATTTTT 58.005 30.769 0.00 0.00 0.00 1.94
240 241 7.914871 TGTGTATATGAAGATTCGCCATTTTTG 59.085 33.333 0.00 0.00 0.00 2.44
241 242 6.917477 TGTATATGAAGATTCGCCATTTTTGC 59.083 34.615 0.00 0.00 0.00 3.68
250 251 3.518294 CGCCATTTTTGCGTGAATTTT 57.482 38.095 0.00 0.00 46.59 1.82
251 252 3.216819 CGCCATTTTTGCGTGAATTTTG 58.783 40.909 0.00 0.00 46.59 2.44
252 253 3.303001 CGCCATTTTTGCGTGAATTTTGT 60.303 39.130 0.00 0.00 46.59 2.83
253 254 4.210629 GCCATTTTTGCGTGAATTTTGTC 58.789 39.130 0.00 0.00 0.00 3.18
254 255 4.024977 GCCATTTTTGCGTGAATTTTGTCT 60.025 37.500 0.00 0.00 0.00 3.41
255 256 5.176590 GCCATTTTTGCGTGAATTTTGTCTA 59.823 36.000 0.00 0.00 0.00 2.59
256 257 6.616260 GCCATTTTTGCGTGAATTTTGTCTAG 60.616 38.462 0.00 0.00 0.00 2.43
257 258 6.420604 CCATTTTTGCGTGAATTTTGTCTAGT 59.579 34.615 0.00 0.00 0.00 2.57
258 259 7.042791 CCATTTTTGCGTGAATTTTGTCTAGTT 60.043 33.333 0.00 0.00 0.00 2.24
259 260 8.963130 CATTTTTGCGTGAATTTTGTCTAGTTA 58.037 29.630 0.00 0.00 0.00 2.24
260 261 8.555166 TTTTTGCGTGAATTTTGTCTAGTTAG 57.445 30.769 0.00 0.00 0.00 2.34
261 262 6.854496 TTGCGTGAATTTTGTCTAGTTAGT 57.146 33.333 0.00 0.00 0.00 2.24
262 263 6.854496 TGCGTGAATTTTGTCTAGTTAGTT 57.146 33.333 0.00 0.00 0.00 2.24
263 264 6.655062 TGCGTGAATTTTGTCTAGTTAGTTG 58.345 36.000 0.00 0.00 0.00 3.16
264 265 6.077838 GCGTGAATTTTGTCTAGTTAGTTGG 58.922 40.000 0.00 0.00 0.00 3.77
265 266 6.293244 GCGTGAATTTTGTCTAGTTAGTTGGT 60.293 38.462 0.00 0.00 0.00 3.67
266 267 7.095523 GCGTGAATTTTGTCTAGTTAGTTGGTA 60.096 37.037 0.00 0.00 0.00 3.25
267 268 8.219105 CGTGAATTTTGTCTAGTTAGTTGGTAC 58.781 37.037 0.00 0.00 0.00 3.34
268 269 8.501580 GTGAATTTTGTCTAGTTAGTTGGTACC 58.498 37.037 4.43 4.43 0.00 3.34
269 270 7.662669 TGAATTTTGTCTAGTTAGTTGGTACCC 59.337 37.037 10.07 0.00 0.00 3.69
270 271 4.789012 TTGTCTAGTTAGTTGGTACCCG 57.211 45.455 10.07 0.00 0.00 5.28
271 272 4.032960 TGTCTAGTTAGTTGGTACCCGA 57.967 45.455 10.07 0.00 0.00 5.14
272 273 3.758554 TGTCTAGTTAGTTGGTACCCGAC 59.241 47.826 10.07 8.43 38.16 4.79
273 274 3.758554 GTCTAGTTAGTTGGTACCCGACA 59.241 47.826 10.07 0.00 40.26 4.35
274 275 4.400567 GTCTAGTTAGTTGGTACCCGACAT 59.599 45.833 10.07 1.82 40.26 3.06
275 276 3.604875 AGTTAGTTGGTACCCGACATG 57.395 47.619 10.07 0.00 40.26 3.21
276 277 3.167485 AGTTAGTTGGTACCCGACATGA 58.833 45.455 10.07 0.00 40.26 3.07
277 278 3.579586 AGTTAGTTGGTACCCGACATGAA 59.420 43.478 10.07 2.10 40.26 2.57
278 279 4.040706 AGTTAGTTGGTACCCGACATGAAA 59.959 41.667 10.07 0.00 40.26 2.69
279 280 3.713826 AGTTGGTACCCGACATGAAAT 57.286 42.857 10.07 0.00 40.26 2.17
291 292 2.410785 CATGAAATGTATGCGGGCAG 57.589 50.000 0.00 0.00 40.20 4.85
292 293 1.601162 CATGAAATGTATGCGGGCAGC 60.601 52.381 1.57 1.57 42.80 5.25
302 303 2.440796 CGGGCAGCATTGGGTGAT 60.441 61.111 0.00 0.00 45.29 3.06
303 304 2.484062 CGGGCAGCATTGGGTGATC 61.484 63.158 0.00 0.00 45.29 2.92
304 305 2.484062 GGGCAGCATTGGGTGATCG 61.484 63.158 0.00 0.00 45.29 3.69
305 306 1.750399 GGCAGCATTGGGTGATCGT 60.750 57.895 0.00 0.00 45.29 3.73
306 307 1.718757 GGCAGCATTGGGTGATCGTC 61.719 60.000 0.00 0.00 45.29 4.20
307 308 0.745845 GCAGCATTGGGTGATCGTCT 60.746 55.000 0.00 0.00 45.29 4.18
308 309 1.293924 CAGCATTGGGTGATCGTCTC 58.706 55.000 0.00 0.00 45.29 3.36
309 310 0.179000 AGCATTGGGTGATCGTCTCC 59.821 55.000 0.00 0.00 0.00 3.71
313 314 4.222847 GGGTGATCGTCTCCCGCC 62.223 72.222 8.66 0.00 40.01 6.13
314 315 3.458163 GGTGATCGTCTCCCGCCA 61.458 66.667 0.00 0.00 36.19 5.69
315 316 2.577059 GTGATCGTCTCCCGCCAA 59.423 61.111 0.00 0.00 36.19 4.52
316 317 1.079405 GTGATCGTCTCCCGCCAAA 60.079 57.895 0.00 0.00 36.19 3.28
317 318 0.462047 GTGATCGTCTCCCGCCAAAT 60.462 55.000 0.00 0.00 36.19 2.32
318 319 0.461870 TGATCGTCTCCCGCCAAATG 60.462 55.000 0.00 0.00 36.19 2.32
319 320 0.462047 GATCGTCTCCCGCCAAATGT 60.462 55.000 0.00 0.00 36.19 2.71
320 321 0.462047 ATCGTCTCCCGCCAAATGTC 60.462 55.000 0.00 0.00 36.19 3.06
321 322 1.079127 CGTCTCCCGCCAAATGTCT 60.079 57.895 0.00 0.00 0.00 3.41
322 323 1.084370 CGTCTCCCGCCAAATGTCTC 61.084 60.000 0.00 0.00 0.00 3.36
323 324 0.744771 GTCTCCCGCCAAATGTCTCC 60.745 60.000 0.00 0.00 0.00 3.71
324 325 0.909610 TCTCCCGCCAAATGTCTCCT 60.910 55.000 0.00 0.00 0.00 3.69
325 326 0.462759 CTCCCGCCAAATGTCTCCTC 60.463 60.000 0.00 0.00 0.00 3.71
326 327 1.452108 CCCGCCAAATGTCTCCTCC 60.452 63.158 0.00 0.00 0.00 4.30
327 328 1.452108 CCGCCAAATGTCTCCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
328 329 1.299648 CGCCAAATGTCTCCTCCCA 59.700 57.895 0.00 0.00 0.00 4.37
329 330 1.026718 CGCCAAATGTCTCCTCCCAC 61.027 60.000 0.00 0.00 0.00 4.61
330 331 0.038166 GCCAAATGTCTCCTCCCACA 59.962 55.000 0.00 0.00 0.00 4.17
331 332 1.547675 GCCAAATGTCTCCTCCCACAA 60.548 52.381 0.00 0.00 0.00 3.33
332 333 2.875296 CCAAATGTCTCCTCCCACAAA 58.125 47.619 0.00 0.00 0.00 2.83
333 334 3.230134 CCAAATGTCTCCTCCCACAAAA 58.770 45.455 0.00 0.00 0.00 2.44
334 335 3.640967 CCAAATGTCTCCTCCCACAAAAA 59.359 43.478 0.00 0.00 0.00 1.94
335 336 4.262164 CCAAATGTCTCCTCCCACAAAAAG 60.262 45.833 0.00 0.00 0.00 2.27
336 337 1.981256 TGTCTCCTCCCACAAAAAGC 58.019 50.000 0.00 0.00 0.00 3.51
337 338 0.875059 GTCTCCTCCCACAAAAAGCG 59.125 55.000 0.00 0.00 0.00 4.68
338 339 0.889186 TCTCCTCCCACAAAAAGCGC 60.889 55.000 0.00 0.00 0.00 5.92
339 340 1.152860 TCCTCCCACAAAAAGCGCA 60.153 52.632 11.47 0.00 0.00 6.09
340 341 0.539438 TCCTCCCACAAAAAGCGCAT 60.539 50.000 11.47 0.00 0.00 4.73
341 342 0.109132 CCTCCCACAAAAAGCGCATC 60.109 55.000 11.47 0.00 0.00 3.91
342 343 0.454957 CTCCCACAAAAAGCGCATCG 60.455 55.000 11.47 0.00 0.00 3.84
354 355 3.420968 CGCATCGCCGAAAATACTG 57.579 52.632 0.00 0.00 0.00 2.74
355 356 0.927537 CGCATCGCCGAAAATACTGA 59.072 50.000 0.00 0.00 0.00 3.41
356 357 1.326245 CGCATCGCCGAAAATACTGAA 59.674 47.619 0.00 0.00 0.00 3.02
357 358 2.222931 CGCATCGCCGAAAATACTGAAA 60.223 45.455 0.00 0.00 0.00 2.69
358 359 3.546020 CGCATCGCCGAAAATACTGAAAT 60.546 43.478 0.00 0.00 0.00 2.17
359 360 4.318475 CGCATCGCCGAAAATACTGAAATA 60.318 41.667 0.00 0.00 0.00 1.40
360 361 5.507077 GCATCGCCGAAAATACTGAAATAA 58.493 37.500 0.00 0.00 0.00 1.40
361 362 5.968848 GCATCGCCGAAAATACTGAAATAAA 59.031 36.000 0.00 0.00 0.00 1.40
362 363 6.636850 GCATCGCCGAAAATACTGAAATAAAT 59.363 34.615 0.00 0.00 0.00 1.40
363 364 7.167468 GCATCGCCGAAAATACTGAAATAAATT 59.833 33.333 0.00 0.00 0.00 1.82
364 365 8.682016 CATCGCCGAAAATACTGAAATAAATTC 58.318 33.333 0.00 0.00 38.60 2.17
365 366 7.753659 TCGCCGAAAATACTGAAATAAATTCA 58.246 30.769 0.00 0.00 45.71 2.57
366 367 7.694784 TCGCCGAAAATACTGAAATAAATTCAC 59.305 33.333 0.00 0.00 43.08 3.18
367 368 7.696453 CGCCGAAAATACTGAAATAAATTCACT 59.304 33.333 0.00 0.00 43.08 3.41
368 369 9.997482 GCCGAAAATACTGAAATAAATTCACTA 57.003 29.630 0.00 0.00 43.08 2.74
379 380 9.663904 TGAAATAAATTCACTAATAATGCGAGC 57.336 29.630 0.00 0.00 43.08 5.03
380 381 9.663904 GAAATAAATTCACTAATAATGCGAGCA 57.336 29.630 0.00 0.00 37.99 4.26
382 383 9.831737 AATAAATTCACTAATAATGCGAGCATC 57.168 29.630 11.26 0.00 35.31 3.91
383 384 6.866010 AATTCACTAATAATGCGAGCATCA 57.134 33.333 11.26 0.00 35.31 3.07
384 385 5.912360 TTCACTAATAATGCGAGCATCAG 57.088 39.130 11.26 8.71 35.31 2.90
385 386 5.200368 TCACTAATAATGCGAGCATCAGA 57.800 39.130 11.26 0.75 35.31 3.27
386 387 5.600696 TCACTAATAATGCGAGCATCAGAA 58.399 37.500 11.26 0.00 35.31 3.02
387 388 5.463392 TCACTAATAATGCGAGCATCAGAAC 59.537 40.000 11.26 0.00 35.31 3.01
388 389 5.464722 CACTAATAATGCGAGCATCAGAACT 59.535 40.000 11.26 0.00 35.31 3.01
389 390 6.018425 CACTAATAATGCGAGCATCAGAACTT 60.018 38.462 11.26 0.00 35.31 2.66
390 391 7.169813 CACTAATAATGCGAGCATCAGAACTTA 59.830 37.037 11.26 0.00 35.31 2.24
391 392 6.925610 AATAATGCGAGCATCAGAACTTAA 57.074 33.333 11.26 0.00 35.31 1.85
392 393 6.925610 ATAATGCGAGCATCAGAACTTAAA 57.074 33.333 11.26 0.00 35.31 1.52
393 394 4.606457 ATGCGAGCATCAGAACTTAAAC 57.394 40.909 4.52 0.00 33.17 2.01
394 395 3.398406 TGCGAGCATCAGAACTTAAACA 58.602 40.909 0.00 0.00 33.17 2.83
395 396 3.186409 TGCGAGCATCAGAACTTAAACAC 59.814 43.478 0.00 0.00 33.17 3.32
396 397 3.433615 GCGAGCATCAGAACTTAAACACT 59.566 43.478 0.00 0.00 33.17 3.55
397 398 4.667668 GCGAGCATCAGAACTTAAACACTG 60.668 45.833 0.00 0.00 33.17 3.66
398 399 4.686091 CGAGCATCAGAACTTAAACACTGA 59.314 41.667 0.00 0.00 42.26 3.41
399 400 5.349817 CGAGCATCAGAACTTAAACACTGAT 59.650 40.000 0.00 0.00 46.53 2.90
404 405 7.823745 ATCAGAACTTAAACACTGATGGTTT 57.176 32.000 13.45 0.00 44.76 3.27
405 406 7.026631 TCAGAACTTAAACACTGATGGTTTG 57.973 36.000 0.00 0.00 36.92 2.93
406 407 6.039270 TCAGAACTTAAACACTGATGGTTTGG 59.961 38.462 0.00 0.00 36.92 3.28
407 408 5.301805 AGAACTTAAACACTGATGGTTTGGG 59.698 40.000 0.00 0.00 36.92 4.12
408 409 4.798882 ACTTAAACACTGATGGTTTGGGA 58.201 39.130 0.00 0.00 36.92 4.37
409 410 5.205056 ACTTAAACACTGATGGTTTGGGAA 58.795 37.500 0.00 0.00 36.92 3.97
410 411 5.838521 ACTTAAACACTGATGGTTTGGGAAT 59.161 36.000 0.00 0.00 36.92 3.01
411 412 7.007723 ACTTAAACACTGATGGTTTGGGAATA 58.992 34.615 0.00 0.00 36.92 1.75
412 413 5.722021 AAACACTGATGGTTTGGGAATAC 57.278 39.130 0.00 0.00 37.10 1.89
413 414 3.697166 ACACTGATGGTTTGGGAATACC 58.303 45.455 0.00 0.00 40.81 2.73
421 422 3.422204 TGGGAATACCACTGCCCC 58.578 61.111 0.00 0.00 46.80 5.80
422 423 1.230149 TGGGAATACCACTGCCCCT 60.230 57.895 0.00 0.00 46.80 4.79
423 424 1.279025 TGGGAATACCACTGCCCCTC 61.279 60.000 0.00 0.00 46.80 4.30
424 425 1.279025 GGGAATACCACTGCCCCTCA 61.279 60.000 0.00 0.00 39.85 3.86
425 426 0.623723 GGAATACCACTGCCCCTCAA 59.376 55.000 0.00 0.00 35.97 3.02
426 427 1.005450 GGAATACCACTGCCCCTCAAA 59.995 52.381 0.00 0.00 35.97 2.69
427 428 2.358195 GGAATACCACTGCCCCTCAAAT 60.358 50.000 0.00 0.00 35.97 2.32
428 429 2.736670 ATACCACTGCCCCTCAAATC 57.263 50.000 0.00 0.00 0.00 2.17
429 430 1.367346 TACCACTGCCCCTCAAATCA 58.633 50.000 0.00 0.00 0.00 2.57
430 431 0.706433 ACCACTGCCCCTCAAATCAT 59.294 50.000 0.00 0.00 0.00 2.45
431 432 1.341383 ACCACTGCCCCTCAAATCATC 60.341 52.381 0.00 0.00 0.00 2.92
432 433 1.396653 CACTGCCCCTCAAATCATCC 58.603 55.000 0.00 0.00 0.00 3.51
433 434 1.002069 ACTGCCCCTCAAATCATCCA 58.998 50.000 0.00 0.00 0.00 3.41
434 435 1.358787 ACTGCCCCTCAAATCATCCAA 59.641 47.619 0.00 0.00 0.00 3.53
435 436 2.023695 ACTGCCCCTCAAATCATCCAAT 60.024 45.455 0.00 0.00 0.00 3.16
436 437 2.626743 CTGCCCCTCAAATCATCCAATC 59.373 50.000 0.00 0.00 0.00 2.67
437 438 1.966354 GCCCCTCAAATCATCCAATCC 59.034 52.381 0.00 0.00 0.00 3.01
438 439 2.690632 GCCCCTCAAATCATCCAATCCA 60.691 50.000 0.00 0.00 0.00 3.41
439 440 3.645434 CCCCTCAAATCATCCAATCCAA 58.355 45.455 0.00 0.00 0.00 3.53
440 441 3.385755 CCCCTCAAATCATCCAATCCAAC 59.614 47.826 0.00 0.00 0.00 3.77
441 442 3.385755 CCCTCAAATCATCCAATCCAACC 59.614 47.826 0.00 0.00 0.00 3.77
442 443 4.025360 CCTCAAATCATCCAATCCAACCA 58.975 43.478 0.00 0.00 0.00 3.67
443 444 4.142093 CCTCAAATCATCCAATCCAACCAC 60.142 45.833 0.00 0.00 0.00 4.16
444 445 4.414677 TCAAATCATCCAATCCAACCACA 58.585 39.130 0.00 0.00 0.00 4.17
445 446 4.463539 TCAAATCATCCAATCCAACCACAG 59.536 41.667 0.00 0.00 0.00 3.66
446 447 2.512692 TCATCCAATCCAACCACAGG 57.487 50.000 0.00 0.00 0.00 4.00
447 448 1.710244 TCATCCAATCCAACCACAGGT 59.290 47.619 0.00 0.00 37.65 4.00
458 459 1.065600 CCACAGGTTGGTTTGCACG 59.934 57.895 0.00 0.00 41.10 5.34
459 460 1.662438 CCACAGGTTGGTTTGCACGT 61.662 55.000 0.00 0.00 41.10 4.49
460 461 0.248458 CACAGGTTGGTTTGCACGTC 60.248 55.000 0.00 0.00 0.00 4.34
461 462 1.010125 CAGGTTGGTTTGCACGTCG 60.010 57.895 0.00 0.00 0.00 5.12
462 463 2.184167 AGGTTGGTTTGCACGTCGG 61.184 57.895 0.00 0.00 0.00 4.79
463 464 2.181521 GGTTGGTTTGCACGTCGGA 61.182 57.895 0.00 0.00 0.00 4.55
464 465 1.278637 GTTGGTTTGCACGTCGGAG 59.721 57.895 0.00 0.00 0.00 4.63
465 466 1.144276 TTGGTTTGCACGTCGGAGA 59.856 52.632 0.00 0.00 0.00 3.71
466 467 0.250124 TTGGTTTGCACGTCGGAGAT 60.250 50.000 0.00 0.00 40.67 2.75
484 485 5.576384 CGGAGATGACTCGGTACTAGTATAC 59.424 48.000 5.75 1.85 43.44 1.47
489 490 5.233225 TGACTCGGTACTAGTATACGATGG 58.767 45.833 23.84 18.16 33.31 3.51
516 517 1.093159 CAGAGTGCAAAGAGATGGCC 58.907 55.000 0.00 0.00 0.00 5.36
566 570 1.672363 GGCAAAGACGATGATGCATGA 59.328 47.619 2.46 0.00 40.51 3.07
691 695 0.527565 CACCAAAAGGAGCGGGAATG 59.472 55.000 0.00 0.00 0.00 2.67
697 701 0.323451 AAGGAGCGGGAATGGAAACC 60.323 55.000 0.00 0.00 0.00 3.27
727 731 6.961360 GGAAAATATCCCGATTTCTTTCCT 57.039 37.500 12.87 0.00 43.00 3.36
728 732 6.971602 GGAAAATATCCCGATTTCTTTCCTC 58.028 40.000 12.87 0.00 43.00 3.71
729 733 6.773200 GGAAAATATCCCGATTTCTTTCCTCT 59.227 38.462 12.87 0.00 43.00 3.69
730 734 7.041030 GGAAAATATCCCGATTTCTTTCCTCTC 60.041 40.741 12.87 0.00 43.00 3.20
731 735 6.500589 AATATCCCGATTTCTTTCCTCTCA 57.499 37.500 0.00 0.00 0.00 3.27
733 737 3.173965 TCCCGATTTCTTTCCTCTCACT 58.826 45.455 0.00 0.00 0.00 3.41
740 754 7.417342 CCGATTTCTTTCCTCTCACTCTCTAAT 60.417 40.741 0.00 0.00 0.00 1.73
828 845 1.275666 CACCATCCTACTCACCACCA 58.724 55.000 0.00 0.00 0.00 4.17
897 914 1.078567 CCTCAGCTCTGCTCCAACC 60.079 63.158 0.00 0.00 36.40 3.77
1470 1490 2.182030 GAGGAGACGAACCCGCTG 59.818 66.667 0.00 0.00 39.95 5.18
1601 1630 2.356667 GGGGCAGGTGAAGAAGGG 59.643 66.667 0.00 0.00 0.00 3.95
1680 1709 2.048222 TTCAAGCGCGAGGAGGTG 60.048 61.111 12.10 0.00 0.00 4.00
1683 1712 4.379243 AAGCGCGAGGAGGTGGTG 62.379 66.667 12.10 0.00 0.00 4.17
1765 1794 2.770164 ACTACACACTGCTCCAATCC 57.230 50.000 0.00 0.00 0.00 3.01
1786 1815 3.055591 CTCTCCATCAACGATCAATCCG 58.944 50.000 0.00 0.00 0.00 4.18
1840 1869 2.131972 TCGTGTGAATGTGAAACTCCG 58.868 47.619 0.00 0.00 38.04 4.63
2050 2079 2.665000 CTTCTTCTGAGCCGCCCA 59.335 61.111 0.00 0.00 0.00 5.36
2084 2113 1.472376 GCTCCTCCTCCTTGATCAACG 60.472 57.143 3.38 0.60 0.00 4.10
2095 2124 1.024046 TGATCAACGTCCCGCCATTG 61.024 55.000 0.00 0.00 0.00 2.82
2109 2138 3.305110 CGCCATTGTTTCGCTTTTTACT 58.695 40.909 0.00 0.00 0.00 2.24
2110 2139 3.360758 CGCCATTGTTTCGCTTTTTACTC 59.639 43.478 0.00 0.00 0.00 2.59
2111 2140 3.360758 GCCATTGTTTCGCTTTTTACTCG 59.639 43.478 0.00 0.00 0.00 4.18
2112 2141 3.360758 CCATTGTTTCGCTTTTTACTCGC 59.639 43.478 0.00 0.00 0.00 5.03
2113 2142 2.673976 TGTTTCGCTTTTTACTCGCC 57.326 45.000 0.00 0.00 0.00 5.54
2114 2143 1.070443 TGTTTCGCTTTTTACTCGCCG 60.070 47.619 0.00 0.00 0.00 6.46
2191 2220 0.750249 TTCGCTGTGTGGAACTCTCA 59.250 50.000 0.00 0.00 38.04 3.27
2247 2277 2.633488 CCATCGTTCCCTCTTTCTTCC 58.367 52.381 0.00 0.00 0.00 3.46
2265 2295 2.688507 TCCTCTGCATTTCTCGTGTTC 58.311 47.619 0.00 0.00 0.00 3.18
2276 2306 5.823209 TTTCTCGTGTTCGATATGGAGTA 57.177 39.130 0.00 0.00 45.21 2.59
2277 2307 4.808077 TCTCGTGTTCGATATGGAGTAC 57.192 45.455 0.00 0.00 45.21 2.73
2278 2308 4.449131 TCTCGTGTTCGATATGGAGTACT 58.551 43.478 0.00 0.00 45.21 2.73
2279 2309 4.880120 TCTCGTGTTCGATATGGAGTACTT 59.120 41.667 0.00 0.00 45.21 2.24
2320 2350 2.745492 GGTGTGCTCTGCCTGCTC 60.745 66.667 0.00 0.00 0.00 4.26
2363 2400 7.018235 CGCCTGTATTTTGTTTTTGTTTTTGT 58.982 30.769 0.00 0.00 0.00 2.83
2440 2481 6.371809 AGTAAATTACTGTTGTGTGGTGTG 57.628 37.500 4.66 0.00 37.69 3.82
2441 2482 5.883673 AGTAAATTACTGTTGTGTGGTGTGT 59.116 36.000 4.66 0.00 37.69 3.72
2442 2483 4.630894 AATTACTGTTGTGTGGTGTGTG 57.369 40.909 0.00 0.00 0.00 3.82
2459 2500 0.318955 GTGCACATTCGCAAGCCTTT 60.319 50.000 13.17 0.00 45.14 3.11
2476 2517 4.279420 AGCCTTTTGAATCACCAGTTTCTC 59.721 41.667 0.00 0.00 0.00 2.87
2486 2527 7.331934 TGAATCACCAGTTTCTCGATTTCTAAG 59.668 37.037 0.00 0.00 0.00 2.18
2517 2559 5.088739 CCGTGTCATTTATTTCAGCTGAAC 58.911 41.667 28.46 15.53 33.13 3.18
2521 2563 6.798959 GTGTCATTTATTTCAGCTGAACAGTC 59.201 38.462 28.46 13.33 33.13 3.51
2547 2607 0.106217 CTGTCCCCCAACACCTTGTT 60.106 55.000 0.00 0.00 42.08 2.83
2561 2621 4.023193 ACACCTTGTTCGGCTTCTTTTATG 60.023 41.667 0.00 0.00 0.00 1.90
2564 2624 4.022329 CCTTGTTCGGCTTCTTTTATGGTT 60.022 41.667 0.00 0.00 0.00 3.67
2625 2685 1.192146 TGGAGGCCCAGTGTACTGAC 61.192 60.000 13.36 5.24 46.59 3.51
2652 2712 6.325596 AGAGTTGCTTTTGTTTTGACTTCTC 58.674 36.000 0.00 0.00 0.00 2.87
2753 2816 1.153823 CGACCTACCGGCTTCACTG 60.154 63.158 0.00 0.00 0.00 3.66
2783 2846 0.814010 AACGTGCCCTGACTTGTCAC 60.814 55.000 0.00 0.00 0.00 3.67
2804 2910 0.390124 TCACCGGCAGAACGTTAACT 59.610 50.000 0.00 0.00 0.00 2.24
2816 2953 5.048921 CAGAACGTTAACTAGGTGAGAGTCA 60.049 44.000 0.00 0.00 0.00 3.41
2817 2954 4.762956 ACGTTAACTAGGTGAGAGTCAC 57.237 45.455 3.71 0.00 46.23 3.67
2818 2955 4.396522 ACGTTAACTAGGTGAGAGTCACT 58.603 43.478 3.71 0.00 46.19 3.41
2821 2958 2.982339 ACTAGGTGAGAGTCACTGGT 57.018 50.000 6.99 1.82 46.19 4.00
2822 2959 2.520069 ACTAGGTGAGAGTCACTGGTG 58.480 52.381 6.99 0.00 46.19 4.17
2823 2960 1.203523 CTAGGTGAGAGTCACTGGTGC 59.796 57.143 6.99 0.00 46.19 5.01
2824 2961 1.373497 GGTGAGAGTCACTGGTGCG 60.373 63.158 6.99 0.00 46.19 5.34
2825 2962 1.364171 GTGAGAGTCACTGGTGCGT 59.636 57.895 0.00 0.00 43.73 5.24
2827 2964 1.202582 GTGAGAGTCACTGGTGCGTAT 59.797 52.381 0.00 0.00 43.73 3.06
2828 2965 1.893137 TGAGAGTCACTGGTGCGTATT 59.107 47.619 0.00 0.00 0.00 1.89
2829 2966 2.094700 TGAGAGTCACTGGTGCGTATTC 60.095 50.000 0.00 0.00 0.00 1.75
2830 2967 1.135373 AGAGTCACTGGTGCGTATTCG 60.135 52.381 0.00 0.00 40.37 3.34
2831 2968 0.885879 AGTCACTGGTGCGTATTCGA 59.114 50.000 0.00 0.00 39.71 3.71
2832 2969 1.135373 AGTCACTGGTGCGTATTCGAG 60.135 52.381 0.00 0.00 39.71 4.04
2833 2970 1.135489 GTCACTGGTGCGTATTCGAGA 60.135 52.381 0.00 0.00 39.71 4.04
2834 2971 1.132453 TCACTGGTGCGTATTCGAGAG 59.868 52.381 0.00 0.00 39.71 3.20
2835 2972 1.132453 CACTGGTGCGTATTCGAGAGA 59.868 52.381 0.00 0.00 39.71 3.10
2866 3003 1.494628 GTGACAGTCATGCAGCACG 59.505 57.895 6.51 0.00 0.00 5.34
2941 3080 2.401063 GTCTCGCGTAGTTCGATAATGC 59.599 50.000 5.77 0.00 42.86 3.56
2968 3107 1.604604 TAGCACAACCAAGCTCAACC 58.395 50.000 0.00 0.00 42.05 3.77
2974 3113 2.362077 ACAACCAAGCTCAACCAACATC 59.638 45.455 0.00 0.00 0.00 3.06
2984 3123 4.143179 GCTCAACCAACATCAGTTACGTAC 60.143 45.833 0.00 0.00 35.85 3.67
3019 3158 3.064545 GTGACCTGTGCTCTTCATATTGC 59.935 47.826 0.00 0.00 0.00 3.56
3020 3159 3.054875 TGACCTGTGCTCTTCATATTGCT 60.055 43.478 0.00 0.00 0.00 3.91
3021 3160 3.539604 ACCTGTGCTCTTCATATTGCTC 58.460 45.455 0.00 0.00 0.00 4.26
3022 3161 3.199508 ACCTGTGCTCTTCATATTGCTCT 59.800 43.478 0.00 0.00 0.00 4.09
3023 3162 4.197750 CCTGTGCTCTTCATATTGCTCTT 58.802 43.478 0.00 0.00 0.00 2.85
3024 3163 4.035324 CCTGTGCTCTTCATATTGCTCTTG 59.965 45.833 0.00 0.00 0.00 3.02
3025 3164 4.582869 TGTGCTCTTCATATTGCTCTTGT 58.417 39.130 0.00 0.00 0.00 3.16
3026 3165 4.393990 TGTGCTCTTCATATTGCTCTTGTG 59.606 41.667 0.00 0.00 0.00 3.33
3027 3166 4.394300 GTGCTCTTCATATTGCTCTTGTGT 59.606 41.667 0.00 0.00 0.00 3.72
3028 3167 4.393990 TGCTCTTCATATTGCTCTTGTGTG 59.606 41.667 0.00 0.00 0.00 3.82
3029 3168 4.730035 GCTCTTCATATTGCTCTTGTGTGC 60.730 45.833 0.00 0.00 0.00 4.57
3030 3169 4.582869 TCTTCATATTGCTCTTGTGTGCT 58.417 39.130 0.00 0.00 34.18 4.40
3031 3170 4.393990 TCTTCATATTGCTCTTGTGTGCTG 59.606 41.667 0.00 0.00 34.18 4.41
3032 3171 3.941573 TCATATTGCTCTTGTGTGCTGA 58.058 40.909 0.00 0.00 34.18 4.26
3033 3172 4.325972 TCATATTGCTCTTGTGTGCTGAA 58.674 39.130 0.00 0.00 34.18 3.02
3034 3173 4.945543 TCATATTGCTCTTGTGTGCTGAAT 59.054 37.500 0.00 0.00 34.18 2.57
3035 3174 5.416639 TCATATTGCTCTTGTGTGCTGAATT 59.583 36.000 0.00 0.00 34.18 2.17
3036 3175 3.631145 TTGCTCTTGTGTGCTGAATTC 57.369 42.857 0.00 0.00 34.18 2.17
3037 3176 2.574450 TGCTCTTGTGTGCTGAATTCA 58.426 42.857 8.12 8.12 34.18 2.57
3038 3177 2.551032 TGCTCTTGTGTGCTGAATTCAG 59.449 45.455 27.82 27.82 46.40 3.02
3039 3178 2.810274 GCTCTTGTGTGCTGAATTCAGA 59.190 45.455 34.43 18.74 46.59 3.27
3040 3179 3.251729 GCTCTTGTGTGCTGAATTCAGAA 59.748 43.478 34.43 24.79 46.59 3.02
3041 3180 4.613167 GCTCTTGTGTGCTGAATTCAGAAG 60.613 45.833 34.43 26.36 46.59 2.85
3042 3181 4.454678 TCTTGTGTGCTGAATTCAGAAGT 58.545 39.130 34.43 0.00 46.59 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.202623 CGGTCTTCGGCGAGGAAG 60.203 66.667 23.59 16.11 43.78 3.46
2 3 4.430765 GCGGTCTTCGGCGAGGAA 62.431 66.667 23.59 5.20 39.69 3.36
5 6 3.916392 AAGTGCGGTCTTCGGCGAG 62.916 63.158 10.46 4.79 41.74 5.03
6 7 3.509137 AAAGTGCGGTCTTCGGCGA 62.509 57.895 4.99 4.99 41.74 5.54
7 8 3.011760 GAAAGTGCGGTCTTCGGCG 62.012 63.158 0.00 0.00 41.74 6.46
8 9 1.959226 TGAAAGTGCGGTCTTCGGC 60.959 57.895 0.00 0.00 39.69 5.54
9 10 0.600255 AGTGAAAGTGCGGTCTTCGG 60.600 55.000 0.00 0.00 39.69 4.30
10 11 1.192534 GAAGTGAAAGTGCGGTCTTCG 59.807 52.381 0.00 0.00 42.76 3.79
11 12 2.032808 GTGAAGTGAAAGTGCGGTCTTC 60.033 50.000 0.00 0.00 34.02 2.87
12 13 1.940613 GTGAAGTGAAAGTGCGGTCTT 59.059 47.619 0.00 0.00 0.00 3.01
13 14 1.583054 GTGAAGTGAAAGTGCGGTCT 58.417 50.000 0.00 0.00 0.00 3.85
14 15 0.232303 CGTGAAGTGAAAGTGCGGTC 59.768 55.000 0.00 0.00 0.00 4.79
15 16 1.157870 CCGTGAAGTGAAAGTGCGGT 61.158 55.000 0.00 0.00 33.87 5.68
16 17 1.569493 CCGTGAAGTGAAAGTGCGG 59.431 57.895 0.00 0.00 0.00 5.69
17 18 1.157870 ACCCGTGAAGTGAAAGTGCG 61.158 55.000 0.00 0.00 0.00 5.34
18 19 0.586802 GACCCGTGAAGTGAAAGTGC 59.413 55.000 0.00 0.00 0.00 4.40
19 20 2.240493 AGACCCGTGAAGTGAAAGTG 57.760 50.000 0.00 0.00 0.00 3.16
20 21 4.411256 TTAAGACCCGTGAAGTGAAAGT 57.589 40.909 0.00 0.00 0.00 2.66
21 22 4.024302 GGTTTAAGACCCGTGAAGTGAAAG 60.024 45.833 0.00 0.00 43.06 2.62
22 23 3.878699 GGTTTAAGACCCGTGAAGTGAAA 59.121 43.478 0.00 0.00 43.06 2.69
23 24 3.469739 GGTTTAAGACCCGTGAAGTGAA 58.530 45.455 0.00 0.00 43.06 3.18
24 25 3.116079 GGTTTAAGACCCGTGAAGTGA 57.884 47.619 0.00 0.00 43.06 3.41
35 36 2.061740 ACAGCGACGAGGTTTAAGAC 57.938 50.000 0.00 0.00 0.00 3.01
36 37 2.034939 TGAACAGCGACGAGGTTTAAGA 59.965 45.455 0.00 0.00 0.00 2.10
37 38 2.400399 TGAACAGCGACGAGGTTTAAG 58.600 47.619 0.00 0.00 0.00 1.85
38 39 2.512485 TGAACAGCGACGAGGTTTAA 57.488 45.000 0.00 0.00 0.00 1.52
39 40 2.333926 CATGAACAGCGACGAGGTTTA 58.666 47.619 0.00 0.00 0.00 2.01
40 41 1.148310 CATGAACAGCGACGAGGTTT 58.852 50.000 0.00 0.00 0.00 3.27
41 42 0.670546 CCATGAACAGCGACGAGGTT 60.671 55.000 0.00 1.02 0.00 3.50
42 43 1.079819 CCATGAACAGCGACGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
43 44 0.803768 CTCCATGAACAGCGACGAGG 60.804 60.000 0.00 0.00 0.00 4.63
44 45 0.171231 TCTCCATGAACAGCGACGAG 59.829 55.000 0.00 0.00 0.00 4.18
45 46 0.817654 ATCTCCATGAACAGCGACGA 59.182 50.000 0.00 0.00 0.00 4.20
46 47 2.492019 TATCTCCATGAACAGCGACG 57.508 50.000 0.00 0.00 0.00 5.12
47 48 3.521560 TGTTATCTCCATGAACAGCGAC 58.478 45.455 0.00 0.00 0.00 5.19
48 49 3.447229 TCTGTTATCTCCATGAACAGCGA 59.553 43.478 15.80 2.14 46.27 4.93
49 50 3.785486 TCTGTTATCTCCATGAACAGCG 58.215 45.455 15.80 0.16 46.27 5.18
50 51 5.363101 TCATCTGTTATCTCCATGAACAGC 58.637 41.667 15.80 0.00 46.27 4.40
52 53 7.186570 TCTTCATCTGTTATCTCCATGAACA 57.813 36.000 0.00 0.00 31.67 3.18
53 54 7.254252 CGTTCTTCATCTGTTATCTCCATGAAC 60.254 40.741 0.00 0.00 31.67 3.18
54 55 6.758416 CGTTCTTCATCTGTTATCTCCATGAA 59.242 38.462 0.00 0.00 33.48 2.57
55 56 6.127338 ACGTTCTTCATCTGTTATCTCCATGA 60.127 38.462 0.00 0.00 0.00 3.07
56 57 6.019237 CACGTTCTTCATCTGTTATCTCCATG 60.019 42.308 0.00 0.00 0.00 3.66
57 58 6.045318 CACGTTCTTCATCTGTTATCTCCAT 58.955 40.000 0.00 0.00 0.00 3.41
58 59 5.410924 CACGTTCTTCATCTGTTATCTCCA 58.589 41.667 0.00 0.00 0.00 3.86
59 60 4.806247 CCACGTTCTTCATCTGTTATCTCC 59.194 45.833 0.00 0.00 0.00 3.71
60 61 5.411781 ACCACGTTCTTCATCTGTTATCTC 58.588 41.667 0.00 0.00 0.00 2.75
61 62 5.407407 ACCACGTTCTTCATCTGTTATCT 57.593 39.130 0.00 0.00 0.00 1.98
62 63 4.265556 CGACCACGTTCTTCATCTGTTATC 59.734 45.833 0.00 0.00 34.56 1.75
63 64 4.174009 CGACCACGTTCTTCATCTGTTAT 58.826 43.478 0.00 0.00 34.56 1.89
64 65 3.571571 CGACCACGTTCTTCATCTGTTA 58.428 45.455 0.00 0.00 34.56 2.41
65 66 2.404215 CGACCACGTTCTTCATCTGTT 58.596 47.619 0.00 0.00 34.56 3.16
66 67 1.935300 GCGACCACGTTCTTCATCTGT 60.935 52.381 0.00 0.00 41.98 3.41
67 68 0.716108 GCGACCACGTTCTTCATCTG 59.284 55.000 0.00 0.00 41.98 2.90
68 69 0.389948 GGCGACCACGTTCTTCATCT 60.390 55.000 0.00 0.00 41.98 2.90
69 70 1.683790 CGGCGACCACGTTCTTCATC 61.684 60.000 0.00 0.00 41.98 2.92
70 71 1.736645 CGGCGACCACGTTCTTCAT 60.737 57.895 0.00 0.00 41.98 2.57
71 72 2.355363 CGGCGACCACGTTCTTCA 60.355 61.111 0.00 0.00 41.98 3.02
72 73 3.110178 CCGGCGACCACGTTCTTC 61.110 66.667 9.30 0.00 41.98 2.87
73 74 3.920196 ACCGGCGACCACGTTCTT 61.920 61.111 9.30 0.00 41.98 2.52
74 75 4.657824 CACCGGCGACCACGTTCT 62.658 66.667 9.30 0.00 41.98 3.01
87 88 1.396996 CTTCCTTTGTATTCCGCACCG 59.603 52.381 0.00 0.00 0.00 4.94
88 89 2.161609 CACTTCCTTTGTATTCCGCACC 59.838 50.000 0.00 0.00 0.00 5.01
89 90 2.161609 CCACTTCCTTTGTATTCCGCAC 59.838 50.000 0.00 0.00 0.00 5.34
90 91 2.039216 TCCACTTCCTTTGTATTCCGCA 59.961 45.455 0.00 0.00 0.00 5.69
91 92 2.418976 GTCCACTTCCTTTGTATTCCGC 59.581 50.000 0.00 0.00 0.00 5.54
92 93 2.671396 CGTCCACTTCCTTTGTATTCCG 59.329 50.000 0.00 0.00 0.00 4.30
93 94 3.934068 TCGTCCACTTCCTTTGTATTCC 58.066 45.455 0.00 0.00 0.00 3.01
94 95 4.332819 CCATCGTCCACTTCCTTTGTATTC 59.667 45.833 0.00 0.00 0.00 1.75
95 96 4.261801 CCATCGTCCACTTCCTTTGTATT 58.738 43.478 0.00 0.00 0.00 1.89
96 97 3.370527 CCCATCGTCCACTTCCTTTGTAT 60.371 47.826 0.00 0.00 0.00 2.29
97 98 2.027561 CCCATCGTCCACTTCCTTTGTA 60.028 50.000 0.00 0.00 0.00 2.41
98 99 1.271379 CCCATCGTCCACTTCCTTTGT 60.271 52.381 0.00 0.00 0.00 2.83
99 100 1.271379 ACCCATCGTCCACTTCCTTTG 60.271 52.381 0.00 0.00 0.00 2.77
100 101 1.064825 ACCCATCGTCCACTTCCTTT 58.935 50.000 0.00 0.00 0.00 3.11
101 102 1.553704 GTACCCATCGTCCACTTCCTT 59.446 52.381 0.00 0.00 0.00 3.36
102 103 1.192428 GTACCCATCGTCCACTTCCT 58.808 55.000 0.00 0.00 0.00 3.36
103 104 0.177373 GGTACCCATCGTCCACTTCC 59.823 60.000 0.00 0.00 0.00 3.46
104 105 0.179119 CGGTACCCATCGTCCACTTC 60.179 60.000 6.25 0.00 0.00 3.01
105 106 1.895238 CGGTACCCATCGTCCACTT 59.105 57.895 6.25 0.00 0.00 3.16
106 107 2.718073 GCGGTACCCATCGTCCACT 61.718 63.158 6.25 0.00 0.00 4.00
107 108 2.202837 GCGGTACCCATCGTCCAC 60.203 66.667 6.25 0.00 0.00 4.02
108 109 3.463585 GGCGGTACCCATCGTCCA 61.464 66.667 6.25 0.00 0.00 4.02
109 110 4.580551 CGGCGGTACCCATCGTCC 62.581 72.222 6.25 0.12 33.26 4.79
110 111 2.003658 TTACGGCGGTACCCATCGTC 62.004 60.000 20.23 4.70 34.68 4.20
111 112 2.008268 CTTACGGCGGTACCCATCGT 62.008 60.000 20.40 20.40 36.26 3.73
112 113 1.299620 CTTACGGCGGTACCCATCG 60.300 63.158 13.24 10.25 33.26 3.84
113 114 0.677842 ATCTTACGGCGGTACCCATC 59.322 55.000 13.24 0.00 33.26 3.51
114 115 1.891150 CTATCTTACGGCGGTACCCAT 59.109 52.381 13.24 0.00 33.26 4.00
115 116 1.321474 CTATCTTACGGCGGTACCCA 58.679 55.000 13.24 0.00 33.26 4.51
116 117 0.038801 GCTATCTTACGGCGGTACCC 60.039 60.000 13.24 0.00 33.26 3.69
117 118 0.957362 AGCTATCTTACGGCGGTACC 59.043 55.000 13.24 0.16 0.00 3.34
118 119 2.789491 AAGCTATCTTACGGCGGTAC 57.211 50.000 13.24 0.00 0.00 3.34
119 120 3.254166 CCTAAAGCTATCTTACGGCGGTA 59.746 47.826 13.24 0.00 31.02 4.02
120 121 2.035576 CCTAAAGCTATCTTACGGCGGT 59.964 50.000 13.24 1.39 31.02 5.68
121 122 2.609737 CCCTAAAGCTATCTTACGGCGG 60.610 54.545 13.24 0.00 31.02 6.13
122 123 2.035576 ACCCTAAAGCTATCTTACGGCG 59.964 50.000 4.80 4.80 31.02 6.46
123 124 3.651206 GACCCTAAAGCTATCTTACGGC 58.349 50.000 0.00 0.00 31.02 5.68
124 125 3.305199 CCGACCCTAAAGCTATCTTACGG 60.305 52.174 0.00 0.00 31.02 4.02
125 126 3.567164 TCCGACCCTAAAGCTATCTTACG 59.433 47.826 0.00 0.00 31.02 3.18
126 127 4.261952 GGTCCGACCCTAAAGCTATCTTAC 60.262 50.000 6.25 0.00 30.04 2.34
127 128 3.893813 GGTCCGACCCTAAAGCTATCTTA 59.106 47.826 6.25 0.00 30.04 2.10
128 129 2.699321 GGTCCGACCCTAAAGCTATCTT 59.301 50.000 6.25 0.00 30.04 2.40
129 130 2.317973 GGTCCGACCCTAAAGCTATCT 58.682 52.381 6.25 0.00 30.04 1.98
130 131 2.816204 GGTCCGACCCTAAAGCTATC 57.184 55.000 6.25 0.00 30.04 2.08
141 142 1.268625 GACAAACAAATGGGTCCGACC 59.731 52.381 9.30 9.30 37.60 4.79
142 143 1.268625 GGACAAACAAATGGGTCCGAC 59.731 52.381 0.00 0.00 40.29 4.79
143 144 1.611519 GGACAAACAAATGGGTCCGA 58.388 50.000 0.00 0.00 40.29 4.55
146 147 6.096673 ACATTTAGGACAAACAAATGGGTC 57.903 37.500 10.12 0.00 41.70 4.46
147 148 6.098982 TGAACATTTAGGACAAACAAATGGGT 59.901 34.615 10.12 0.00 41.70 4.51
148 149 6.520272 TGAACATTTAGGACAAACAAATGGG 58.480 36.000 10.12 0.00 41.70 4.00
149 150 8.430801 TTTGAACATTTAGGACAAACAAATGG 57.569 30.769 10.12 0.00 41.70 3.16
152 153 9.442047 ACATTTTGAACATTTAGGACAAACAAA 57.558 25.926 0.00 0.00 31.71 2.83
154 155 9.522804 GTACATTTTGAACATTTAGGACAAACA 57.477 29.630 0.00 0.00 31.71 2.83
155 156 9.744468 AGTACATTTTGAACATTTAGGACAAAC 57.256 29.630 0.00 0.00 31.71 2.93
156 157 9.743057 CAGTACATTTTGAACATTTAGGACAAA 57.257 29.630 0.00 0.00 0.00 2.83
157 158 9.126151 TCAGTACATTTTGAACATTTAGGACAA 57.874 29.630 0.00 0.00 0.00 3.18
158 159 8.684386 TCAGTACATTTTGAACATTTAGGACA 57.316 30.769 0.00 0.00 0.00 4.02
159 160 9.959749 TTTCAGTACATTTTGAACATTTAGGAC 57.040 29.630 0.00 0.00 33.36 3.85
192 193 9.737427 ACACAAAACGAAATTCATTACATTACA 57.263 25.926 0.00 0.00 0.00 2.41
205 206 9.702726 CGAATCTTCATATACACAAAACGAAAT 57.297 29.630 0.00 0.00 0.00 2.17
206 207 7.690637 GCGAATCTTCATATACACAAAACGAAA 59.309 33.333 0.00 0.00 0.00 3.46
207 208 7.177407 GCGAATCTTCATATACACAAAACGAA 58.823 34.615 0.00 0.00 0.00 3.85
208 209 6.237996 GGCGAATCTTCATATACACAAAACGA 60.238 38.462 0.00 0.00 0.00 3.85
209 210 5.901884 GGCGAATCTTCATATACACAAAACG 59.098 40.000 0.00 0.00 0.00 3.60
210 211 6.781138 TGGCGAATCTTCATATACACAAAAC 58.219 36.000 0.00 0.00 0.00 2.43
211 212 6.993786 TGGCGAATCTTCATATACACAAAA 57.006 33.333 0.00 0.00 0.00 2.44
212 213 7.566760 AATGGCGAATCTTCATATACACAAA 57.433 32.000 0.00 0.00 0.00 2.83
213 214 7.566760 AAATGGCGAATCTTCATATACACAA 57.433 32.000 0.00 0.00 0.00 3.33
214 215 7.566760 AAAATGGCGAATCTTCATATACACA 57.433 32.000 0.00 0.00 0.00 3.72
215 216 7.096477 GCAAAAATGGCGAATCTTCATATACAC 60.096 37.037 0.00 0.00 0.00 2.90
216 217 6.917477 GCAAAAATGGCGAATCTTCATATACA 59.083 34.615 0.00 0.00 0.00 2.29
217 218 7.325599 GCAAAAATGGCGAATCTTCATATAC 57.674 36.000 0.00 0.00 0.00 1.47
231 232 4.024977 AGACAAAATTCACGCAAAAATGGC 60.025 37.500 0.00 0.00 0.00 4.40
232 233 5.655893 AGACAAAATTCACGCAAAAATGG 57.344 34.783 0.00 0.00 0.00 3.16
233 234 7.393551 ACTAGACAAAATTCACGCAAAAATG 57.606 32.000 0.00 0.00 0.00 2.32
234 235 9.180678 CTAACTAGACAAAATTCACGCAAAAAT 57.819 29.630 0.00 0.00 0.00 1.82
235 236 8.185505 ACTAACTAGACAAAATTCACGCAAAAA 58.814 29.630 0.00 0.00 0.00 1.94
236 237 7.699566 ACTAACTAGACAAAATTCACGCAAAA 58.300 30.769 0.00 0.00 0.00 2.44
237 238 7.254227 ACTAACTAGACAAAATTCACGCAAA 57.746 32.000 0.00 0.00 0.00 3.68
238 239 6.854496 ACTAACTAGACAAAATTCACGCAA 57.146 33.333 0.00 0.00 0.00 4.85
239 240 6.293190 CCAACTAACTAGACAAAATTCACGCA 60.293 38.462 0.00 0.00 0.00 5.24
240 241 6.077838 CCAACTAACTAGACAAAATTCACGC 58.922 40.000 0.00 0.00 0.00 5.34
241 242 7.186021 ACCAACTAACTAGACAAAATTCACG 57.814 36.000 0.00 0.00 0.00 4.35
242 243 8.501580 GGTACCAACTAACTAGACAAAATTCAC 58.498 37.037 7.15 0.00 0.00 3.18
243 244 8.611654 GGTACCAACTAACTAGACAAAATTCA 57.388 34.615 7.15 0.00 0.00 2.57
255 256 9.583029 ACATTTCATGTCGGGTACCAACTAACT 62.583 40.741 15.35 0.52 45.60 2.24
256 257 7.514032 ACATTTCATGTCGGGTACCAACTAAC 61.514 42.308 15.35 4.46 45.60 2.34
257 258 5.513441 ACATTTCATGTCGGGTACCAACTAA 60.513 40.000 15.35 5.19 45.60 2.24
258 259 4.020039 ACATTTCATGTCGGGTACCAACTA 60.020 41.667 15.35 3.20 45.60 2.24
259 260 3.244770 ACATTTCATGTCGGGTACCAACT 60.245 43.478 15.35 0.00 45.60 3.16
260 261 3.078837 ACATTTCATGTCGGGTACCAAC 58.921 45.455 15.35 11.80 45.60 3.77
261 262 3.426787 ACATTTCATGTCGGGTACCAA 57.573 42.857 15.35 0.00 45.60 3.67
263 264 3.250040 GCATACATTTCATGTCGGGTACC 59.750 47.826 2.17 2.17 45.24 3.34
264 265 3.059868 CGCATACATTTCATGTCGGGTAC 60.060 47.826 0.00 0.00 43.67 3.34
265 266 3.127589 CGCATACATTTCATGTCGGGTA 58.872 45.455 0.00 0.00 43.67 3.69
266 267 1.939934 CGCATACATTTCATGTCGGGT 59.060 47.619 0.00 0.00 43.67 5.28
267 268 1.264020 CCGCATACATTTCATGTCGGG 59.736 52.381 7.33 3.23 43.67 5.14
268 269 1.264020 CCCGCATACATTTCATGTCGG 59.736 52.381 8.00 8.00 43.67 4.79
269 270 1.334059 GCCCGCATACATTTCATGTCG 60.334 52.381 0.00 0.00 43.67 4.35
270 271 1.675483 TGCCCGCATACATTTCATGTC 59.325 47.619 0.00 0.00 43.67 3.06
271 272 1.677576 CTGCCCGCATACATTTCATGT 59.322 47.619 0.00 0.00 46.92 3.21
272 273 1.601162 GCTGCCCGCATACATTTCATG 60.601 52.381 0.00 0.00 38.92 3.07
273 274 0.670162 GCTGCCCGCATACATTTCAT 59.330 50.000 0.00 0.00 38.92 2.57
274 275 0.679321 TGCTGCCCGCATACATTTCA 60.679 50.000 0.00 0.00 45.47 2.69
275 276 2.105984 TGCTGCCCGCATACATTTC 58.894 52.632 0.00 0.00 45.47 2.17
276 277 4.335214 TGCTGCCCGCATACATTT 57.665 50.000 0.00 0.00 45.47 2.32
285 286 2.440796 ATCACCCAATGCTGCCCG 60.441 61.111 0.00 0.00 0.00 6.13
286 287 2.484062 CGATCACCCAATGCTGCCC 61.484 63.158 0.00 0.00 0.00 5.36
287 288 1.718757 GACGATCACCCAATGCTGCC 61.719 60.000 0.00 0.00 0.00 4.85
288 289 0.745845 AGACGATCACCCAATGCTGC 60.746 55.000 0.00 0.00 0.00 5.25
289 290 1.293924 GAGACGATCACCCAATGCTG 58.706 55.000 0.00 0.00 0.00 4.41
290 291 0.179000 GGAGACGATCACCCAATGCT 59.821 55.000 0.00 0.00 0.00 3.79
291 292 0.815615 GGGAGACGATCACCCAATGC 60.816 60.000 13.03 0.00 45.31 3.56
292 293 0.530650 CGGGAGACGATCACCCAATG 60.531 60.000 16.37 2.28 46.16 2.82
293 294 1.823295 CGGGAGACGATCACCCAAT 59.177 57.895 16.37 0.00 46.16 3.16
294 295 3.014085 GCGGGAGACGATCACCCAA 62.014 63.158 16.37 0.00 46.16 4.12
295 296 3.458163 GCGGGAGACGATCACCCA 61.458 66.667 16.37 0.00 46.16 4.51
303 304 1.079127 AGACATTTGGCGGGAGACG 60.079 57.895 0.00 0.00 45.14 4.18
304 305 0.744771 GGAGACATTTGGCGGGAGAC 60.745 60.000 0.00 0.00 39.51 3.36
305 306 0.909610 AGGAGACATTTGGCGGGAGA 60.910 55.000 0.00 0.00 0.00 3.71
306 307 0.462759 GAGGAGACATTTGGCGGGAG 60.463 60.000 0.00 0.00 0.00 4.30
307 308 1.602237 GAGGAGACATTTGGCGGGA 59.398 57.895 0.00 0.00 0.00 5.14
308 309 1.452108 GGAGGAGACATTTGGCGGG 60.452 63.158 0.00 0.00 0.00 6.13
309 310 1.452108 GGGAGGAGACATTTGGCGG 60.452 63.158 0.00 0.00 0.00 6.13
310 311 1.026718 GTGGGAGGAGACATTTGGCG 61.027 60.000 0.00 0.00 0.00 5.69
311 312 0.038166 TGTGGGAGGAGACATTTGGC 59.962 55.000 0.00 0.00 0.00 4.52
312 313 2.584835 TTGTGGGAGGAGACATTTGG 57.415 50.000 0.00 0.00 0.00 3.28
313 314 4.797275 GCTTTTTGTGGGAGGAGACATTTG 60.797 45.833 0.00 0.00 0.00 2.32
314 315 3.321968 GCTTTTTGTGGGAGGAGACATTT 59.678 43.478 0.00 0.00 0.00 2.32
315 316 2.893489 GCTTTTTGTGGGAGGAGACATT 59.107 45.455 0.00 0.00 0.00 2.71
316 317 2.519013 GCTTTTTGTGGGAGGAGACAT 58.481 47.619 0.00 0.00 0.00 3.06
317 318 1.813862 CGCTTTTTGTGGGAGGAGACA 60.814 52.381 0.00 0.00 0.00 3.41
318 319 0.875059 CGCTTTTTGTGGGAGGAGAC 59.125 55.000 0.00 0.00 0.00 3.36
319 320 0.889186 GCGCTTTTTGTGGGAGGAGA 60.889 55.000 0.00 0.00 0.00 3.71
320 321 1.172180 TGCGCTTTTTGTGGGAGGAG 61.172 55.000 9.73 0.00 0.00 3.69
321 322 0.539438 ATGCGCTTTTTGTGGGAGGA 60.539 50.000 9.73 0.00 0.00 3.71
322 323 0.109132 GATGCGCTTTTTGTGGGAGG 60.109 55.000 9.73 0.00 0.00 4.30
323 324 0.454957 CGATGCGCTTTTTGTGGGAG 60.455 55.000 9.73 0.00 0.00 4.30
324 325 1.578926 CGATGCGCTTTTTGTGGGA 59.421 52.632 9.73 0.00 0.00 4.37
325 326 4.151417 CGATGCGCTTTTTGTGGG 57.849 55.556 9.73 0.00 0.00 4.61
336 337 0.927537 TCAGTATTTTCGGCGATGCG 59.072 50.000 11.76 0.00 0.00 4.73
337 338 3.398954 TTTCAGTATTTTCGGCGATGC 57.601 42.857 11.76 0.00 0.00 3.91
338 339 8.560576 AATTTATTTCAGTATTTTCGGCGATG 57.439 30.769 11.76 4.79 0.00 3.84
339 340 8.402472 TGAATTTATTTCAGTATTTTCGGCGAT 58.598 29.630 11.76 0.00 39.44 4.58
340 341 7.694784 GTGAATTTATTTCAGTATTTTCGGCGA 59.305 33.333 4.99 4.99 44.89 5.54
341 342 7.696453 AGTGAATTTATTTCAGTATTTTCGGCG 59.304 33.333 0.00 0.00 44.48 6.46
342 343 8.911247 AGTGAATTTATTTCAGTATTTTCGGC 57.089 30.769 0.00 0.00 44.48 5.54
353 354 9.663904 GCTCGCATTATTAGTGAATTTATTTCA 57.336 29.630 0.00 0.00 42.09 2.69
354 355 9.663904 TGCTCGCATTATTAGTGAATTTATTTC 57.336 29.630 0.00 0.00 34.72 2.17
356 357 9.831737 GATGCTCGCATTATTAGTGAATTTATT 57.168 29.630 5.79 0.00 36.70 1.40
357 358 9.002600 TGATGCTCGCATTATTAGTGAATTTAT 57.997 29.630 5.79 0.00 36.70 1.40
358 359 8.376889 TGATGCTCGCATTATTAGTGAATTTA 57.623 30.769 5.79 0.00 36.70 1.40
359 360 7.227314 TCTGATGCTCGCATTATTAGTGAATTT 59.773 33.333 5.79 0.00 36.70 1.82
360 361 6.707608 TCTGATGCTCGCATTATTAGTGAATT 59.292 34.615 5.79 0.00 36.70 2.17
361 362 6.226052 TCTGATGCTCGCATTATTAGTGAAT 58.774 36.000 5.79 0.00 36.70 2.57
362 363 5.600696 TCTGATGCTCGCATTATTAGTGAA 58.399 37.500 5.79 0.00 36.70 3.18
363 364 5.200368 TCTGATGCTCGCATTATTAGTGA 57.800 39.130 5.79 0.00 36.70 3.41
364 365 5.464722 AGTTCTGATGCTCGCATTATTAGTG 59.535 40.000 5.79 0.00 36.70 2.74
365 366 5.605534 AGTTCTGATGCTCGCATTATTAGT 58.394 37.500 5.79 0.00 36.70 2.24
366 367 6.536731 AAGTTCTGATGCTCGCATTATTAG 57.463 37.500 5.79 3.60 36.70 1.73
367 368 8.335356 GTTTAAGTTCTGATGCTCGCATTATTA 58.665 33.333 5.79 0.00 36.70 0.98
368 369 6.925610 TTAAGTTCTGATGCTCGCATTATT 57.074 33.333 5.79 0.00 36.70 1.40
369 370 6.316140 TGTTTAAGTTCTGATGCTCGCATTAT 59.684 34.615 5.79 0.00 36.70 1.28
370 371 5.641636 TGTTTAAGTTCTGATGCTCGCATTA 59.358 36.000 5.79 0.89 36.70 1.90
371 372 4.455533 TGTTTAAGTTCTGATGCTCGCATT 59.544 37.500 5.79 0.00 36.70 3.56
372 373 4.002982 TGTTTAAGTTCTGATGCTCGCAT 58.997 39.130 3.70 3.70 39.69 4.73
373 374 3.186409 GTGTTTAAGTTCTGATGCTCGCA 59.814 43.478 0.00 0.00 0.00 5.10
374 375 3.433615 AGTGTTTAAGTTCTGATGCTCGC 59.566 43.478 0.00 0.00 0.00 5.03
375 376 4.686091 TCAGTGTTTAAGTTCTGATGCTCG 59.314 41.667 0.00 0.00 32.95 5.03
376 377 6.734104 ATCAGTGTTTAAGTTCTGATGCTC 57.266 37.500 13.59 0.00 43.22 4.26
380 381 7.255590 CCAAACCATCAGTGTTTAAGTTCTGAT 60.256 37.037 10.46 10.46 44.92 2.90
381 382 6.039270 CCAAACCATCAGTGTTTAAGTTCTGA 59.961 38.462 7.60 7.60 40.43 3.27
382 383 6.208644 CCAAACCATCAGTGTTTAAGTTCTG 58.791 40.000 0.00 0.00 34.32 3.02
383 384 5.301805 CCCAAACCATCAGTGTTTAAGTTCT 59.698 40.000 0.00 0.00 34.32 3.01
384 385 5.300792 TCCCAAACCATCAGTGTTTAAGTTC 59.699 40.000 0.00 0.00 34.32 3.01
385 386 5.205056 TCCCAAACCATCAGTGTTTAAGTT 58.795 37.500 0.00 0.00 34.32 2.66
386 387 4.798882 TCCCAAACCATCAGTGTTTAAGT 58.201 39.130 0.00 0.00 34.32 2.24
387 388 5.782893 TTCCCAAACCATCAGTGTTTAAG 57.217 39.130 0.00 0.00 34.32 1.85
388 389 6.209788 GGTATTCCCAAACCATCAGTGTTTAA 59.790 38.462 0.00 0.00 34.32 1.52
389 390 5.712917 GGTATTCCCAAACCATCAGTGTTTA 59.287 40.000 0.00 0.00 34.32 2.01
390 391 4.526650 GGTATTCCCAAACCATCAGTGTTT 59.473 41.667 0.00 0.00 36.40 2.83
391 392 4.086457 GGTATTCCCAAACCATCAGTGTT 58.914 43.478 0.00 0.00 35.73 3.32
392 393 3.075283 TGGTATTCCCAAACCATCAGTGT 59.925 43.478 0.00 0.00 41.50 3.55
393 394 3.696045 TGGTATTCCCAAACCATCAGTG 58.304 45.455 0.00 0.00 41.50 3.66
404 405 1.230149 AGGGGCAGTGGTATTCCCA 60.230 57.895 5.28 0.00 42.51 4.37
405 406 1.279025 TGAGGGGCAGTGGTATTCCC 61.279 60.000 0.00 0.00 38.03 3.97
406 407 0.623723 TTGAGGGGCAGTGGTATTCC 59.376 55.000 0.00 0.00 0.00 3.01
407 408 2.507407 TTTGAGGGGCAGTGGTATTC 57.493 50.000 0.00 0.00 0.00 1.75
408 409 2.311542 TGATTTGAGGGGCAGTGGTATT 59.688 45.455 0.00 0.00 0.00 1.89
409 410 1.922447 TGATTTGAGGGGCAGTGGTAT 59.078 47.619 0.00 0.00 0.00 2.73
410 411 1.367346 TGATTTGAGGGGCAGTGGTA 58.633 50.000 0.00 0.00 0.00 3.25
411 412 0.706433 ATGATTTGAGGGGCAGTGGT 59.294 50.000 0.00 0.00 0.00 4.16
412 413 1.396653 GATGATTTGAGGGGCAGTGG 58.603 55.000 0.00 0.00 0.00 4.00
413 414 1.341285 TGGATGATTTGAGGGGCAGTG 60.341 52.381 0.00 0.00 0.00 3.66
414 415 1.002069 TGGATGATTTGAGGGGCAGT 58.998 50.000 0.00 0.00 0.00 4.40
415 416 2.148446 TTGGATGATTTGAGGGGCAG 57.852 50.000 0.00 0.00 0.00 4.85
416 417 2.669781 GATTGGATGATTTGAGGGGCA 58.330 47.619 0.00 0.00 0.00 5.36
417 418 1.966354 GGATTGGATGATTTGAGGGGC 59.034 52.381 0.00 0.00 0.00 5.80
418 419 3.317455 TGGATTGGATGATTTGAGGGG 57.683 47.619 0.00 0.00 0.00 4.79
419 420 3.385755 GGTTGGATTGGATGATTTGAGGG 59.614 47.826 0.00 0.00 0.00 4.30
420 421 4.025360 TGGTTGGATTGGATGATTTGAGG 58.975 43.478 0.00 0.00 0.00 3.86
421 422 4.463539 TGTGGTTGGATTGGATGATTTGAG 59.536 41.667 0.00 0.00 0.00 3.02
422 423 4.414677 TGTGGTTGGATTGGATGATTTGA 58.585 39.130 0.00 0.00 0.00 2.69
423 424 4.382254 CCTGTGGTTGGATTGGATGATTTG 60.382 45.833 0.00 0.00 0.00 2.32
424 425 3.770933 CCTGTGGTTGGATTGGATGATTT 59.229 43.478 0.00 0.00 0.00 2.17
425 426 3.245730 ACCTGTGGTTGGATTGGATGATT 60.246 43.478 0.00 0.00 27.29 2.57
426 427 2.312741 ACCTGTGGTTGGATTGGATGAT 59.687 45.455 0.00 0.00 27.29 2.45
427 428 1.710244 ACCTGTGGTTGGATTGGATGA 59.290 47.619 0.00 0.00 27.29 2.92
428 429 2.220653 ACCTGTGGTTGGATTGGATG 57.779 50.000 0.00 0.00 27.29 3.51
429 430 2.999185 AACCTGTGGTTGGATTGGAT 57.001 45.000 0.71 0.00 45.07 3.41
441 442 0.248458 GACGTGCAAACCAACCTGTG 60.248 55.000 0.00 0.00 0.00 3.66
442 443 1.711060 CGACGTGCAAACCAACCTGT 61.711 55.000 0.00 0.00 0.00 4.00
443 444 1.010125 CGACGTGCAAACCAACCTG 60.010 57.895 0.00 0.00 0.00 4.00
444 445 2.184167 CCGACGTGCAAACCAACCT 61.184 57.895 0.00 0.00 0.00 3.50
445 446 2.113131 CTCCGACGTGCAAACCAACC 62.113 60.000 0.00 0.00 0.00 3.77
446 447 1.155424 TCTCCGACGTGCAAACCAAC 61.155 55.000 0.00 0.00 0.00 3.77
447 448 0.250124 ATCTCCGACGTGCAAACCAA 60.250 50.000 0.00 0.00 0.00 3.67
448 449 0.948623 CATCTCCGACGTGCAAACCA 60.949 55.000 0.00 0.00 0.00 3.67
449 450 0.669318 TCATCTCCGACGTGCAAACC 60.669 55.000 0.00 0.00 0.00 3.27
450 451 0.438830 GTCATCTCCGACGTGCAAAC 59.561 55.000 0.00 0.00 0.00 2.93
451 452 0.317160 AGTCATCTCCGACGTGCAAA 59.683 50.000 0.00 0.00 40.98 3.68
452 453 0.109272 GAGTCATCTCCGACGTGCAA 60.109 55.000 0.00 0.00 40.98 4.08
453 454 1.506718 GAGTCATCTCCGACGTGCA 59.493 57.895 0.00 0.00 40.98 4.57
454 455 1.583967 CGAGTCATCTCCGACGTGC 60.584 63.158 0.00 0.00 40.98 5.34
455 456 1.062685 CCGAGTCATCTCCGACGTG 59.937 63.158 0.00 0.00 40.98 4.49
456 457 0.107993 TACCGAGTCATCTCCGACGT 60.108 55.000 0.00 0.00 40.98 4.34
457 458 0.304098 GTACCGAGTCATCTCCGACG 59.696 60.000 0.00 0.00 40.98 5.12
458 459 1.666054 AGTACCGAGTCATCTCCGAC 58.334 55.000 0.00 0.00 37.40 4.79
459 460 2.433604 ACTAGTACCGAGTCATCTCCGA 59.566 50.000 0.00 0.00 37.40 4.55
460 461 2.836262 ACTAGTACCGAGTCATCTCCG 58.164 52.381 0.00 0.00 37.40 4.63
461 462 5.576384 CGTATACTAGTACCGAGTCATCTCC 59.424 48.000 15.31 0.00 37.40 3.71
462 463 6.385843 TCGTATACTAGTACCGAGTCATCTC 58.614 44.000 17.84 0.00 37.35 2.75
463 464 6.338214 TCGTATACTAGTACCGAGTCATCT 57.662 41.667 17.84 0.00 0.00 2.90
464 465 6.035866 CCATCGTATACTAGTACCGAGTCATC 59.964 46.154 23.07 2.66 0.00 2.92
465 466 5.873712 CCATCGTATACTAGTACCGAGTCAT 59.126 44.000 23.07 10.40 0.00 3.06
466 467 5.011023 TCCATCGTATACTAGTACCGAGTCA 59.989 44.000 23.07 11.87 0.00 3.41
467 468 5.473931 TCCATCGTATACTAGTACCGAGTC 58.526 45.833 23.07 5.63 0.00 3.36
468 469 5.474578 TCCATCGTATACTAGTACCGAGT 57.525 43.478 23.07 13.43 0.00 4.18
469 470 6.348050 GGTTTCCATCGTATACTAGTACCGAG 60.348 46.154 23.07 16.97 0.00 4.63
470 471 5.470098 GGTTTCCATCGTATACTAGTACCGA 59.530 44.000 21.81 21.81 0.00 4.69
471 472 5.471456 AGGTTTCCATCGTATACTAGTACCG 59.529 44.000 4.31 10.75 0.00 4.02
472 473 6.675987 CAGGTTTCCATCGTATACTAGTACC 58.324 44.000 4.31 0.00 0.00 3.34
484 485 1.081892 CACTCTGCAGGTTTCCATCG 58.918 55.000 15.13 0.00 0.00 3.84
529 533 6.262496 GTCTTTGCCTCCCTTAATAATACCAC 59.738 42.308 0.00 0.00 0.00 4.16
566 570 6.826668 TCACACTATCATATTTCCGTTCCAT 58.173 36.000 0.00 0.00 0.00 3.41
691 695 6.293790 CGGGATATTTTCCTATTTCGGTTTCC 60.294 42.308 0.00 0.00 44.75 3.13
727 731 1.693627 GCGGGGATTAGAGAGTGAGA 58.306 55.000 0.00 0.00 0.00 3.27
728 732 0.676736 GGCGGGGATTAGAGAGTGAG 59.323 60.000 0.00 0.00 0.00 3.51
729 733 0.759436 GGGCGGGGATTAGAGAGTGA 60.759 60.000 0.00 0.00 0.00 3.41
730 734 0.760945 AGGGCGGGGATTAGAGAGTG 60.761 60.000 0.00 0.00 0.00 3.51
731 735 0.470268 GAGGGCGGGGATTAGAGAGT 60.470 60.000 0.00 0.00 0.00 3.24
733 737 1.152312 GGAGGGCGGGGATTAGAGA 60.152 63.158 0.00 0.00 0.00 3.10
828 845 2.915869 GGGTGTGGTCTGTGGTGT 59.084 61.111 0.00 0.00 0.00 4.16
853 870 2.410879 GCGATCGAGCTGAGCTGA 59.589 61.111 21.57 10.46 39.88 4.26
854 871 3.023479 CGCGATCGAGCTGAGCTG 61.023 66.667 21.57 4.45 39.88 4.24
855 872 3.462333 GACGCGATCGAGCTGAGCT 62.462 63.158 21.57 6.69 43.88 4.09
856 873 3.021788 GACGCGATCGAGCTGAGC 61.022 66.667 21.57 0.00 39.41 4.26
857 874 2.352915 GGACGCGATCGAGCTGAG 60.353 66.667 21.57 4.53 39.41 3.35
858 875 3.889044 GGGACGCGATCGAGCTGA 61.889 66.667 21.57 0.00 39.41 4.26
880 897 1.447489 CGGTTGGAGCAGAGCTGAG 60.447 63.158 0.85 0.00 39.88 3.35
888 905 2.270352 ATTTGAGTTCGGTTGGAGCA 57.730 45.000 0.00 0.00 0.00 4.26
897 914 5.200454 CCATCTGCGATTAATTTGAGTTCG 58.800 41.667 0.00 0.00 0.00 3.95
1043 1060 3.097137 CTGACGATGCTGCTGCTGC 62.097 63.158 22.51 22.51 40.48 5.25
1046 1063 3.873883 GGCTGACGATGCTGCTGC 61.874 66.667 8.89 8.89 40.20 5.25
1115 1132 1.076995 TCTTCCTCCTCGATCGGCA 60.077 57.895 16.41 0.00 0.00 5.69
1601 1630 0.179097 GATCTTGGTCTCCACCTCGC 60.179 60.000 0.00 0.00 44.17 5.03
1680 1709 1.078426 CTCCCACCCGTTGATCACC 60.078 63.158 0.00 0.00 0.00 4.02
1683 1712 2.590092 CCCTCCCACCCGTTGATC 59.410 66.667 0.00 0.00 0.00 2.92
1765 1794 3.055591 CGGATTGATCGTTGATGGAGAG 58.944 50.000 0.00 0.00 0.00 3.20
1786 1815 1.002868 AGAGAGCATGGTGTGGTGC 60.003 57.895 0.00 0.00 39.00 5.01
1840 1869 3.426568 GCTTCCTCTGCACGCACC 61.427 66.667 0.00 0.00 0.00 5.01
2050 2079 4.098722 GAGCAGCAGAGCAGGGCT 62.099 66.667 0.00 0.00 43.88 5.19
2055 2084 2.284478 AGGAGGAGCAGCAGAGCA 60.284 61.111 0.00 0.00 36.85 4.26
2056 2085 2.500646 GAGGAGGAGCAGCAGAGC 59.499 66.667 0.00 0.00 0.00 4.09
2057 2086 0.977108 AAGGAGGAGGAGCAGCAGAG 60.977 60.000 0.00 0.00 0.00 3.35
2058 2087 1.079987 AAGGAGGAGGAGCAGCAGA 59.920 57.895 0.00 0.00 0.00 4.26
2059 2088 1.221293 CAAGGAGGAGGAGCAGCAG 59.779 63.158 0.00 0.00 0.00 4.24
2060 2089 0.619832 ATCAAGGAGGAGGAGCAGCA 60.620 55.000 0.00 0.00 0.00 4.41
2061 2090 0.106521 GATCAAGGAGGAGGAGCAGC 59.893 60.000 0.00 0.00 0.00 5.25
2062 2091 1.493861 TGATCAAGGAGGAGGAGCAG 58.506 55.000 0.00 0.00 0.00 4.24
2084 2113 1.862602 AAGCGAAACAATGGCGGGAC 61.863 55.000 0.00 0.00 37.90 4.46
2095 2124 1.070376 ACGGCGAGTAAAAAGCGAAAC 60.070 47.619 16.62 0.00 0.00 2.78
2224 2253 1.087501 GAAAGAGGGAACGATGGCAC 58.912 55.000 0.00 0.00 0.00 5.01
2225 2254 0.984230 AGAAAGAGGGAACGATGGCA 59.016 50.000 0.00 0.00 0.00 4.92
2226 2255 2.010497 GAAGAAAGAGGGAACGATGGC 58.990 52.381 0.00 0.00 0.00 4.40
2247 2277 2.328473 TCGAACACGAGAAATGCAGAG 58.672 47.619 0.00 0.00 0.00 3.35
2265 2295 8.265165 TGCTATGTACTAAGTACTCCATATCG 57.735 38.462 0.00 0.00 39.49 2.92
2276 2306 9.988815 CTTCCATTCTTATGCTATGTACTAAGT 57.011 33.333 0.00 0.00 0.00 2.24
2277 2307 9.429359 CCTTCCATTCTTATGCTATGTACTAAG 57.571 37.037 0.00 0.00 0.00 2.18
2278 2308 8.375506 CCCTTCCATTCTTATGCTATGTACTAA 58.624 37.037 0.00 0.00 0.00 2.24
2279 2309 7.512746 ACCCTTCCATTCTTATGCTATGTACTA 59.487 37.037 0.00 0.00 0.00 1.82
2320 2350 1.572085 CGGCTCTTGCACTTGGACTG 61.572 60.000 0.00 0.00 41.91 3.51
2379 2416 7.828717 TCATATTGACACACACACAATATCCTT 59.171 33.333 0.00 0.00 41.88 3.36
2436 2477 1.270777 GCTTGCGAATGTGCACACAC 61.271 55.000 24.37 17.53 46.25 3.82
2437 2478 1.008652 GCTTGCGAATGTGCACACA 60.009 52.632 24.37 13.06 46.25 3.72
2438 2479 1.730547 GGCTTGCGAATGTGCACAC 60.731 57.895 24.37 10.18 46.25 3.82
2439 2480 1.454572 AAGGCTTGCGAATGTGCACA 61.455 50.000 24.08 24.08 46.25 4.57
2440 2481 0.318955 AAAGGCTTGCGAATGTGCAC 60.319 50.000 10.75 10.75 46.25 4.57
2441 2482 0.388659 AAAAGGCTTGCGAATGTGCA 59.611 45.000 0.00 0.00 44.61 4.57
2442 2483 0.785979 CAAAAGGCTTGCGAATGTGC 59.214 50.000 0.00 0.00 0.00 4.57
2459 2500 5.997746 AGAAATCGAGAAACTGGTGATTCAA 59.002 36.000 0.00 0.00 0.00 2.69
2476 2517 4.625742 ACACGGATGAACACTTAGAAATCG 59.374 41.667 0.00 0.00 0.00 3.34
2486 2527 6.607689 TGAAATAAATGACACGGATGAACAC 58.392 36.000 0.00 0.00 0.00 3.32
2517 2559 0.615850 GGGGGACAGAGAAAGGACTG 59.384 60.000 0.00 0.00 39.65 3.51
2521 2563 0.771127 TGTTGGGGGACAGAGAAAGG 59.229 55.000 0.00 0.00 0.00 3.11
2547 2607 5.067273 TGAAGAAACCATAAAAGAAGCCGA 58.933 37.500 0.00 0.00 0.00 5.54
2561 2621 6.072112 TGTTAGTTGAGCATTGAAGAAACC 57.928 37.500 0.00 0.00 0.00 3.27
2564 2624 6.318648 AGTGTTGTTAGTTGAGCATTGAAGAA 59.681 34.615 0.00 0.00 0.00 2.52
2603 2663 0.473886 AGTACACTGGGCCTCCAAGT 60.474 55.000 4.53 0.00 43.51 3.16
2625 2685 5.095490 AGTCAAAACAAAAGCAACTCTTCG 58.905 37.500 0.00 0.00 32.88 3.79
2652 2712 7.483375 CGTTTGACTACTCTTCACTAGATCTTG 59.517 40.741 0.00 0.36 30.92 3.02
2753 2816 1.279840 GGCACGTTCTGCTGTTCAC 59.720 57.895 0.00 0.00 46.25 3.18
2775 2838 0.532862 CTGCCGGTGAAGTGACAAGT 60.533 55.000 1.90 0.00 0.00 3.16
2783 2846 1.193874 GTTAACGTTCTGCCGGTGAAG 59.806 52.381 2.82 0.00 0.00 3.02
2816 2953 1.460504 TCTCTCGAATACGCACCAGT 58.539 50.000 0.00 0.00 39.58 4.00
2817 2954 2.561733 TTCTCTCGAATACGCACCAG 57.438 50.000 0.00 0.00 39.58 4.00
2818 2955 3.306917 TTTTCTCTCGAATACGCACCA 57.693 42.857 0.00 0.00 39.58 4.17
2839 2976 3.446873 TGCATGACTGTCACCTTGTTTTT 59.553 39.130 13.50 0.00 0.00 1.94
2840 2977 3.023119 TGCATGACTGTCACCTTGTTTT 58.977 40.909 13.50 0.00 0.00 2.43
2841 2978 2.620115 CTGCATGACTGTCACCTTGTTT 59.380 45.455 13.50 0.00 0.00 2.83
2842 2979 2.224606 CTGCATGACTGTCACCTTGTT 58.775 47.619 13.50 0.00 0.00 2.83
2843 2980 1.888215 CTGCATGACTGTCACCTTGT 58.112 50.000 13.50 0.00 0.00 3.16
2844 2981 0.520404 GCTGCATGACTGTCACCTTG 59.480 55.000 13.50 9.00 0.00 3.61
2845 2982 0.109153 TGCTGCATGACTGTCACCTT 59.891 50.000 13.50 0.00 0.00 3.50
2846 2983 0.604780 GTGCTGCATGACTGTCACCT 60.605 55.000 13.50 0.00 0.00 4.00
2847 2984 1.871772 GTGCTGCATGACTGTCACC 59.128 57.895 13.50 7.91 0.00 4.02
2848 2985 1.494628 CGTGCTGCATGACTGTCAC 59.505 57.895 16.69 1.86 0.00 3.67
2849 2986 2.319841 GCGTGCTGCATGACTGTCA 61.320 57.895 25.09 13.60 45.45 3.58
2850 2987 2.477845 GCGTGCTGCATGACTGTC 59.522 61.111 25.09 0.00 45.45 3.51
2866 3003 3.862267 GGATACGCTCAGATATGTCATGC 59.138 47.826 0.00 0.00 0.00 4.06
2870 3007 4.328440 GCAATGGATACGCTCAGATATGTC 59.672 45.833 0.00 0.00 42.51 3.06
2941 3080 3.256631 AGCTTGGTTGTGCTAATTTGGAG 59.743 43.478 0.00 0.00 37.81 3.86
2968 3107 3.119743 TCGAGGGTACGTAACTGATGTTG 60.120 47.826 11.05 0.00 37.59 3.33
2974 3113 3.119743 TGTCAATCGAGGGTACGTAACTG 60.120 47.826 11.05 0.00 34.70 3.16
2984 3123 0.898320 AGGTCACTGTCAATCGAGGG 59.102 55.000 0.00 0.00 0.00 4.30
3019 3158 4.514441 ACTTCTGAATTCAGCACACAAGAG 59.486 41.667 27.64 17.83 43.46 2.85
3020 3159 4.454678 ACTTCTGAATTCAGCACACAAGA 58.545 39.130 27.64 11.59 43.46 3.02
3021 3160 4.825546 ACTTCTGAATTCAGCACACAAG 57.174 40.909 27.45 24.70 43.46 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.