>input_sequence_62360
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--------------------------------------------------------ATGTTGAGTGGACAAACGGCGGTT
AGTGGCAGCAGCAGCAGCAGCAGCAGCAGCATCGTCAGCCGCGGCGTCGAGCAGGGGAGCGGGAGCGGGGAGCAGCAGCA
GCACCAGCGGCTGCCGATCGAGGAGGAAGA---GGAGGAGCCAGAGTTCAGGGACATCCACGCGCTGAGCCCGCCCCGCG
CGCTGAGCCTGTACCGCCGGAGCCGGCCGGGCAGCAGGGACTCGTGGGGGTCTGCGGCGGGGGCAGGGGGGAGCAGACAC
ACGTCGATCCGCTCCGTCGGGAGCGACACCGCCCCCAGCGAGCTCTTCCCTACTATGAGCAGGGAGTTCTCGGCCATGGT
CGCCGCAGCAGCCAGCGCTAACGCCTCGTCCTCCGCCGCGGCGGGCCACAGGGAGAGCGTGGACCGCGCGGCGAACGAGG
ACGCGCTGGGGAGGATCGGCGAGGAGGAGCTGGAGGAGACGAACCCGCTGGCCATCGTGCCGGACAGCAACCCCATCCCG
TCGCCGCGCCGGGGGCTGTCGCCGCGCCCGGTGG---------AGGTGGCGGCGCCCGGTGCCGGTGCCGGACAGGGCGA
CGAGGTGTCGGTGGGGCAGGTGAAGAAGGGCGAGGTGGAGACCAAGATCGCGGCGTGGCAGATCGCGGAGGTCGCCAAGG
TCAACAACCGCTTCAAGCGCGAGGAGGTGGTGATCAACGGGTGGGAGGGCGACCAGGTCGAGAAGGCCAGCGCATGGCTC
AACAAGTACGAGGTACTACACACTGCTCCAATCCTCTCCATCAACGATCAATCCGCACCACACCATGCTCTCTCTGAATG
AATTCTGATCGTGTGAATGTGAAACTCCGGTGCGTGCAGAGGAAGCTGGAGGAGAAGCGGGCCAAGGCGATGGAGAAGGC
GCAGAACGAGGTGGCCAGGGCCCGGCGGAAGGCGGAGGACAAGCGCGCGTCGGCGGAGGCCAAGAGGGGCACCAAGGTGG
CGCGCGTGCTGGAGCTCGCCAACTTCATGCGGGCCGTCGGGAGGGCGCCCACCAAGCGCTCCTTCTTCTGA---------
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>chr2A_1_TraesCS2A01G199300
TCTTCCTCGCCGAAGACCGCACTTTCACTTCACGGGTCTTAAACCTCGTCGCTGTTCATGGAGATAACAGATGAAGAACG
TGGTCGCCGGTGCGGAATACAAAGGAAGTGGACGATGGGTACCGCCGTAAGATAGCTTTAGGGTCGGACCCATTTGTTTG
TCCTAAATGTTCAAAATGTACTGAAAAATCTTTGTAATGTAATGAATTTCGTTTTGTGTATATGAAGATTCGCCATTTTT
GCGTGAATTTTGTCTAGTTAGTTGGTACCCGACATGAAATGTATGCGGGCAGCATTGGGTGATCGTCTCCCGCCAAATGT
CTCCTCCCACAAAAAGCGCATCGCCGAAAATACTGAAATAAATTCACTAATAATGCGAGCATCAGAACTTAAACACTGAT
GGTTTGGGAATACCACTGCCCCTCAAATCATCCAATCCAACCACAGGTTGGTTTGCACGTCGGAGATGACTCGGTACTAG
TATACGATGGAAACCTGCAGAGTGCAAAGAGATGGCC---AAAAAAAATCATGTGGTATTATTAAGGGAGGCAAAGACGA
TGATGCATGATGGAACGGAAATATGATAGTGTGAGTCAGCGCACTTTGCCCACGCGACCCTTGCGCTCCCAGAAAACAAA
CATAATCTCCGGAATAAGAAAGCGCGACGAAGCAGCACCAAAAGGAGCGGGAATGGAAACCGAAATAGGAAAATATCCCG
ATTTCTTTCCTCTCACT----------CTCTAAT---CCCCGCCCTCCATTGGTGGGCGCCTCCGCTGCCACAACCTGGC
CTCTATTTAAGAAGGCTCCTTGCGCCACCATCCTACTCACCACCACACCACAGACCACACCCGCACCGCTCAGCTCAGCT
CGATCGCGTCCCCAGCCTCAGCTCTGCTCCAACCGAACTCAAATTAATCGCAGATGGTTTCTTGTGCGCCAGTAGTGGCT
TAGCGCATTAGCGGCGGAGGTTGGTACGATCAGGTAGGCCGGAGGTGAGGTGCCACATGTTGAGTGGACAAACGGCGGTT
AGTGGCAGCAGCAGCAGCAGCAGCAGCAGCATCGTCAGCCGCGGCGTCGAGCAGGGGAGCGGGAGCGGGGAGCAGCAGCA
GCACCAGCGGCTGCCGATCGAGGAGGAAGA---GGAGGAGCCAGAGTTCAGGGACATCCACGCGCTGAGCCCGCCCCGCG
CGCTGAGCCTGTACCGCCGGAGCCGGCCGGGCAGCAGGGACTCGTGGGGGTCTGCGGCGGGGGCAGGGGGGAGCAGACAC
ACGTCGATCCGCTCCGTCGGGAGCGACACCGCCCCCAGCGAGCTCTTCCCTACTATGAGCAGGGAGTTCTCGGCCATGGT
CGCCGCAGCAGCCAGCGCTAACGCCTCGTCCTCCGCCGCGGCGGGCCACAGGGAGAGCGTGGACCGCGCGGCGAACGAGG
ACGCGCTGGGGAGGATCGGCGAGGAGGAGCTGGAGGAGACGAACCCGCTGGCCATCGTGCCGGACAGCAACCCCATCCCG
TCGCCGCGCCGGGGGCTGTCGCCGCGCCCGGTGG---------AGGTGGCGGCGCCCGGTGCCGGTGCCGGACAGGGCGA
CGAGGTGTCGGTGGGGCAGGTGAAGAAGGGCGAGGTGGAGACCAAGATCGCGGCGTGGCAGATCGCGGAGGTCGCCAAGG
TCAACAACCGCTTCAAGCGCGAGGAGGTGGTGATCAACGGGTGGGAGGGCGACCAGGTCGAGAAGGCCAGCGCATGGCTC
AACAAGTACGAGGTACTACACACTGCTCCAATCCTCTCCATCAACGATCAATCCGCACCACACCATGCTCTCTCTGAATG
AATTCTGATCGTGTGAATGTGAAACTCCGGTGCGTGCAGAGGAAGCTGGAGGAGAAGCGGGCCAAGGCGATGGAGAAGGC
GCAGAACGAGGTGGCCAGGGCCCGGCGGAAGGCGGAGGACAAGCGCGCGTCGGCGGAGGCCAAGAGGGGCACCAAGGTGG
CGCGCGTGCTGGAGCTCGCCAACTTCATGCGGGCCGTCGGGAGGGCGCCCACCAAGCGCTCCTTCTTCTGAGCCGCCCAG
CCCTGCTCTGCTGCTCCTCCTCCTTGATCAACGTCCCGCCATTGTTTCGCTTTTTACTCGCCGTCGCCGTCGCCGGATCG
TTCACCGCTTCGCTTCACAGGAACCTCCTGTGCTCGCTGCTTCGCTGTGTGGAACTCTCATTTTAGTGTTGTATCCACAT
GTATGGTGTGGTGTGCCATCGTTCCCTCTTTC-TTCCTCTGCATTTCTCGTGTTCGATATGGAGTACTTAGTACATAGCA
TAAGAATGGAAGGGTGTGCTCTGCCTGCTCAGTCCAAGTGCAAGAGCCGCCTGTATTTT-------GTTTTTGTTTTTGT
TTTTTGTTTCCGATCAAGGATATTGTG----TGTGTGTCAATATGAACAAGATATGCAGTAAATTACTGTTGTGTGGTGT
GTGCACATTCGCAAGCCTTTTGAATCACCAGTTTCTCGATTTCTAAGTGTTCATCCGTGTCATTTA-TTTCAGCTGAACA
GTCCTTTCTCTGTCCC------------------CCAACACCTTGTTCGGCTTCTTTTATGGTTTCTTCAATGCTCAACT
AACAACACTTTGACATAAAAAAACTTGGAGGCCCAGTGTACTGACGAAGAGTTGCTTTTGTTTTGACTTCTCAAGATCTA
GTGAAGAGTAGTCAAACGATCAGTAATTTGGAACTCAAGTAC---TAAACTGAGTTTTCTGCCTTGATGATGGCATGCGA
CCTACCGGCTTCACTGTGAACAGCAGAACGTGCCCTGACTTGTCACTTCACCGGCAGA----------------------
---------------------ACGTTAACTAG-------------------------------GTGAGAGTCACTGGTGC
GTATTCGAGAGAAAAAAAAACAAGGTGACAGTCATGCAGCACGCATG--ACATATCTGAGCGTATCCATTGCAAATCGGA
AATTATTTTTATGTGTTGGTCTCGCGTAGTTCGATAATGCTCCAAATTAGCACAACCAAGCTCAACCAACATCAGTTACG
TACCCTCGATTGACAGTGACCTGTGCTCTTCATATTGCTCTTGTGTGCTGAATTCAGAAGT
>chr2B_474
GTACAT--------------------------------------------------------------------------
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------------------------------------------------------------------------------AG
TATATGATGAAAACCTGCAGAGTGTAAAGAGATGGCAAAAAAATAAAATCATCTGGTATTATTAAGGGAGGCAAAGACGA
TGATGCATGGTGGAACGGAAATATGATAGTGTGAGTCAGCGCACTTTGCCCACGCGACCCTTGCGCTCCCAGAAAACAAA
CATAATCTCCGGAATAAGAAAGCGCGACGAAGCAGCACCAAAAGGGGCGGGAATAGAAACAGAAATAGGAAAATATCCCG
ATTTCTTTCCCAGTGCGGCTTCTCTCACTCTAAC---CCTCGCCCTCCATTGGTGGGCGCCTCCGCTGCCACAACCTGCC
CTCTATTTAAGAAGGCTCCTTGCGCCACCATCCTACTCACCACTGCACCACAGACCACACCCACACCGCG-----CAGCT
GGATCGCGTCCCCAGCTTCAGCTCAGCTCCAACTGAACTCAAATTAATCGCAGATGGTTTCTTGTGCGCCAGTAGTGGCT
TAGCGCATTAGCGGCGGAGGTTGGTACGATCGGGTAGGGCGGAGGTGAGGTGCCACATGTTGAGTGGACAAACGGCGGTT
AGTGGCAGCAGCAGCAGCATCAT------CATCGTCAGCCGCGGCGTCGAGCAGGGGAGCGGGAGCGGGGAGCAGA----
--ACCAGTGGCGGCCGATCGAGGAGGAAGAGGT---GGAGCCAGAGTTCAGGGACATCCACGCGCTGAGCCCGCCCCGCG
CGCTGAGCCTGTACCGCCGGAGCCAGCCGGGCAGCAGGGACTCTTGGGGGTCTGCGGCGGGTGCAGGGGGGAGCAGACAC
ACGTCGATCCGCTCCGTCGGGAGCGACACCGCCCCCAGCGAGCTCTTCCCTACTATGAGCAGAGAGTTCTCGGCCATGGT
CGCCGCAGCAGCCAGCGCTAACGCCTCGTCCTCCGCCGCAGCGGGTCACAGGGAGAGCGTGGACCGCGTGGCGAACGAGG
ACGCGCTGGAGAGAATCGGCGAGGAGGAGCTGGAGGAGACGAACCCGCTCGCCATCGTGCCGGACAGCAACCCCATCCCG
TCGCCGCGCCGGGGCCTGTCGCCGCGCCCGGTGGCCGGCGGCGAGGTGGCGGTGCCTGGTGCC------GGACAGGGCGA
CGAGGTGTCGGTGGGGCAGGTGAAGAAGGACGAGGTGGAGACCAAGATCGCGGCGTGGCAGATCGCGGAGGTCGCCAAGG
TCAACAACCGCTTCAAGCGCGAGGAGGTCGTCATCAACGGGTGGGAGGGCGACCAGGTCGAGAAGGCCAGCGCATGGCTC
AACAAGTACGAGGTACTACACACTGCTCCAATCTTCTCCATCAACGATCAATCCACACCACACCATGCTCTCTCTGAATG
AATTCTGATGGTGTGATGTGATG-----CGTCCGTGCAGAGGAAGCTGGAGGAGAAGCGGGCCAAGGCGATGGAGAAGGC
GCAGAACGAGGTGGCCAGGGCCCGGCGGAAGGCGGAGGACAGGCGCGCGTCGGCGGAGGCCAAGAGGGGCACCAAGGTGG
CGCGCGTGCTGGAGCTCGCCAACTTCATGAGGGCCGTCGGCAGGGCGCCCACCAAGCGCTCCTTCTTCTGAGCTGCCCTG
CCC--------TGCTCCTCCTCCATGATCAACTTCCCGCCATTATTTCGCTTTTTAC------TCGCCGTCGCCGGATCG
TTCACCGCTTCGCTTCACAGGAACCTCCTGTGCTCGCTGCTTCGCTGTGTGGAACTCTCGTTTTAGTGTTGTATCCACAT
GTATGGTGTG-----CCATCGTTCCCTCTTTCTTCCTTCTGCATTTCTCGTGTTTGATATGGAGT----AGTACATAGCA
TAAGAATGGAAGGGTGTGCTCTGCCTGCTGAGTCCAAGTGCAAGAGCCGCCTGTGTTTTTGTTTTTGTTTTTGTTTTTG-
TTTTTGTTTCCGATCGAGGATATTGTGTGTGTGTGTGTCAATATGAACAAGATATGCAGTAAATTACTGTTGTGTG----
---CACATTCGCAAGCCTTCTGAATCACCAGTTTATGGATTTCTAA-TGTTCATCCGTGTCATTTA-TTTCAGTTGAATA
CTTCTTTCTCTGTCCC------------------CCAACACCTTGTCCGGCTTCTTTTATTGTCTCTTCAATGCTCAACT
AACAACACTTTGACATAAAAAATATTGGAGGCCCAGTGTAATTATGAAGAGCTGCTTTTGTTTTGACTTCTGAAGATGTA
CAGAAGAGTAGTCAAACAATCAGTAATTTGGAACTCAAGTACTACTAAACTGAGTTTTCCGCCTTGATGATGGCATGCGA
CCTACCGGCTTCACTATGAACAGCAGAACGTGCCCTGTCTTGTCAGTTCACCGGCAGAACGAGGATTGCAGTGGCGAGCT
AGTCCTGCTCACTCAATTGTCACGTTAACGAG-------------------------------GTGAGAGTCTGGGGGAG
AAACGG----------------------CACTCATGCAGCACACATAACACATATCTGAGCGTATCCATTGCAAATCGGA
AATTATTTTGATGTGTTTGTCGCGCGTAGTTCGATAATGTTCCAAATTAGCACAACCAAGCTCAACTAACATGAGTTACG
TATCCT-------CAGTGACCTGTGCTCTTCATATTG------------------------
>chr2D_474
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-------------------------------------------------------------------------GTACTAG
TATATGATGAAAACCTGCAGAGTGCAAAGAGATGGCAA-AAAAAAATATCATCTGGTATT----------------ACGA
TGATGCATGGTGGAACGGCAATATGATAGTGTGAGTCAGCGCACTTTGCCCACGCGACCCTTGCGCTCCCAGAAAACAAA
CATAATCTCCGGAATAAGAAAGCGCGAGGAAGCAGCACCAAAAGGAGCGGGAATTGAAGCAGAAATAGGAAAATATCCCG
ATTTCTTTCCCAGTGCGGCTCCTCTCACTCTCTAACCCCCCGCCCTCCATTGGTGGGCGCCTCCGCTGCCACAACCTGGC
CTCTATTTAAGAAGGCTCCTTGCGCCACCATCCTACTCACCACCGCACCACAGACCACACCCGCACCGCG-----CAGCT
CGATCGCGTCCCCAGCTTCAGCTGAGCTCCAACTCAACTCAAATTAATCGCAGATGGTTTCTTGTGGGCCAGTAGTGGCT
TAGCGCATTAGCGGCGGAGGTTGGTACGATCAGGTAGGCCGGAGGTGAGGTGCCACATGTTGAGTGGACAAACGGCGGTT
AGTGGCAGCAGCAGCAGCATCAT------CGTCATCAGCCGCGGCGTCGAGCAGGGGAGCGGGAGCGGGGAGCA---GCA
GCACCAGCGGCGGCCGGTCGAGGTGGAAGAGGGGGAGGAGCCAGAGTTCAGGGACATCCACGCGCTGAGCCCGCCCCGCG
CGCTGAGCCTGTACCGCCGGAGCCGGCCGGGCAGCAGGGACTCTTGGGGGTCTGCGGCGGGGGCAGGGGGGAGCAGACAC
ACGTCGATTCGCTCCGTCGGGAGCGACACCGCCCCCAGCGAGCTCTTCCCTACTATGAGCAGGGAGTTCTCGGCCATGGT
CGCCGCAGCAGCCAGCGCTAACGCCTCGTCCTCCGCCGCGGCGGGCCACAGGGAGAGCGTGGACCGCGTGGCGAACGAGG
ACGCGCTGGGGAGGATCGGCGAGGAGGAGCTGGAGGAGACGAACCCGCTCGCCATCGTGCCGGACAGCAACCCCATCCCG
TCGCCGCGCCGGGGGCTGTCGCCGCGCCCGGTGG---------AGGTGGCGGCGCCCGGTGCCGGACATGGACAGGGCGA
CGAGGTGTCGGTGGGGCAGGTGAAGAAGGACGAGGTGGAGACCAAGATCGCGGCGTGGCAGATCGCGGAGGTCGCCAAGG
TCAACAACCGCTTCAAGCGCGAGGAGGTCGTCATCAACGGGTGGGAGGGCGACCAGGTCGAGAAGGCCAGCGCATGGCTC
AACAAGTACGAGGTAC---ACACAGCCCCAATCTTCTCCATCAATGATCAATCCACACCACACCATGCTCGCTCTGAACG
AATTCTGATCGCGTGAATGTGAAACTCCCGTGCGTGCAGAGGAAGCTGGAGGAGAAGCGGGCCAAGGCGATGGAGAAGGC
GCAGAACGAGGTGGCCAGGGCCCGGCGGAAGGCGGAGGACAAGCGTGCGTCGGCGGAGGCCAAGAGGGGCACCAAGGTGG
CGCGCGTGCTGGAGCTCGCCAACTTCATGCGGGCCGTCGGCAGGGCGCCCACCAAGCGCTCCTTCTTCTGAGCTGCCCTG
CT---------TGCTCCTCCTCCTTGATCAACTTCCCGCCATTATTTCGCTTTTTAC------TCGCCGTCGCCTGATCG
TTCACCGCTTCGCTTCATAGGAACCTCCTGTGCTCGCTGCTTCGCTGTGTGGAACTCTCGTTTTAGTGTTGTATCCACAT
GTATGGTGTG----------------TCTTTCTTTCTTCTGCATTTCTCGTGTTTGATATGGAGT----AGTACATAGCA
TAAGAATGGAAGGGTGTGCTCTGCCTGCTGAGTCCAAGTGCAAGAGCTGCCTGTATTTT-------GTTTTTGTTTTTG-
TTTTTGTTTCCGGTCGAGGATATTGTG----TGTGTGTCAATATGAACAAGATATGCAGTAAATTACTGTTCTATG----
---CACATTTGCAAGCCTTCTGAATCACCAGTTTCTTGATTTCCAA-TATTCACCCGTGTCACTTATTTTCAGCTAAATA
GTTCTTTCTCTGTCCGGCTTCTTTTATTGTCTCACCAACACCTTGTCCGGCTTCTTTTATTGTGTCTTCAATGCTCAACT
AACAACACTTTGACATAAAAAATCTTGGAGGCCCAGTGTACTGATGAAGAGTTGCTTTTGTTTTGACTTCTGAAGATCTG
GTGAAGAGTAGTCAAACGATCAGTAATTTGGAACTGAAGTAC---TAAACTGAGTTTTCTGTCTTGATGATGGCATGCGA
CCTGCCGGCTTCACTATGAACAGCAGAACGTGCCCTGTCTT-TCAGTTCACCGGCAGAACGAGGATTACAGTCGCGAGCT
AGTCCTGCTCACTCAATTGTCACGTAAACGAGCTGAGAGTCCGTATTCGAGAAAAAAAATGAGGTGAGAGTCTGGGGGAG
AAACGG----------------------CAGTCATGCAGCACACATAACACATATCTGAGCGTATTCATTGCAAAACGGA
AATTATTTTTATGTGTTGGTCTCGCGTAGTTCGATAATGTTCCAAATTAGCACAACCAAGCTCAACTAACATGAATTACG
TATCCTCGATTGACAGTGACCTGTGCTCTTCATATTG------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----S----S--------------------------S---------------S---------------------------
---------S----------------------------------------------------------------------
------------------------------------------------------S-----S-------------------
----------SSSSS-S----------------S----------------------------------------------
--------------------------------------------S------------------------SSSSSS-----
----------------S-------S--------S----------------------------------------------
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-------------------S--SSSSSSS----------------------------------------------SS---
-----------S--------------------------------------------------------------------
-------------------------------------------S------------------------------------
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--------------------------------------------------------------------S-----------
-------------------------------------------------S------------------------------
-----------------------------------------------------------------SSSS-----------
-----------------------------S--------------------------------------------------
----------------------------S--S------------------------------------------------
---------------------------------S--------------------S-------------------------
----------------------------S---------------------------------------------------
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----------------------------------------S--------------------------------S----S-
---SSSSSSSS---------------------S----------S-------------SSSSSS-----------------
-----------------------------------------------------------S--------------------
----------SSSSS---------------------S-----------------S----------SSSS-----------
-----------------------------S-------------------------------------------------S
---------------S------------------------------------------------------------SSSS
SSS----------------S----------------S---------S-------------------------------S-
--S-------------------------------------------S-------------S--S----------------
----------------------S---------------------S--------------------------S--------
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---------------S---------------------S-------S----------------------------------
-----------------------------S------------------------------------------SSS--SSS
SS-SSSSSSSSSSSSSSSSSSSSSSSSS--------------S---S---------------------------------
---------------------------------------S--------------------------S-----S-------
--S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
>forward_331
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-----------------------------------------------------------------------GCCAAATGT
CTCCTCCCACA---------------------------------------------------------------------
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>reverse_2090
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---------GCTGCTCCTCCTCCTTGATC---------------------------------------------------
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