Multiple sequence alignment - TraesCS2A01G191300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G191300 chr2A 100.000 2686 0 0 1 2686 158175405 158178090 0.000000e+00 4961.0
1 TraesCS2A01G191300 chr2A 81.229 293 40 9 1156 1439 158256195 158256481 3.480000e-54 222.0
2 TraesCS2A01G191300 chr2D 97.150 772 17 3 1887 2658 143116125 143115359 0.000000e+00 1299.0
3 TraesCS2A01G191300 chr2D 92.374 813 31 12 1073 1877 143117799 143117010 0.000000e+00 1129.0
4 TraesCS2A01G191300 chr2D 93.506 770 25 6 220 979 143118725 143117971 0.000000e+00 1122.0
5 TraesCS2A01G191300 chr2D 93.665 221 12 2 1 219 143119010 143118790 1.990000e-86 329.0
6 TraesCS2A01G191300 chr2D 80.481 374 58 10 1155 1519 142711481 142711114 3.410000e-69 272.0
7 TraesCS2A01G191300 chr2D 93.789 161 7 1 908 1068 143118003 143117846 3.460000e-59 239.0
8 TraesCS2A01G191300 chr2B 91.839 821 41 8 1065 1884 200690619 200689824 0.000000e+00 1122.0
9 TraesCS2A01G191300 chr2B 92.722 632 17 9 1887 2518 200681792 200681190 0.000000e+00 885.0
10 TraesCS2A01G191300 chr2B 79.805 411 60 14 1156 1555 200643696 200643298 7.320000e-71 278.0
11 TraesCS2A01G191300 chr2B 78.610 374 65 10 1155 1519 200864195 200863828 1.610000e-57 233.0
12 TraesCS2A01G191300 chr2B 93.939 132 6 1 2506 2637 200655766 200655637 5.870000e-47 198.0
13 TraesCS2A01G191300 chr2B 100.000 32 0 0 1930 1961 66711814 66711845 2.890000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G191300 chr2A 158175405 158178090 2685 False 4961.0 4961 100.0000 1 2686 1 chr2A.!!$F1 2685
1 TraesCS2A01G191300 chr2D 143115359 143119010 3651 True 823.6 1299 94.0968 1 2658 5 chr2D.!!$R2 2657
2 TraesCS2A01G191300 chr2B 200689824 200690619 795 True 1122.0 1122 91.8390 1065 1884 1 chr2B.!!$R4 819
3 TraesCS2A01G191300 chr2B 200681190 200681792 602 True 885.0 885 92.7220 1887 2518 1 chr2B.!!$R3 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.104855 TAGAGCTATGGCACCTTGCG 59.895 55.0 3.1 0.0 46.21 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1979 1.00243 CCCGGGTGTGATATCAGATGG 59.998 57.143 14.18 8.48 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.104855 TAGAGCTATGGCACCTTGCG 59.895 55.000 3.10 0.00 46.21 4.85
76 79 1.772836 AATGCATTGAGAGCCCCTTC 58.227 50.000 12.09 0.00 0.00 3.46
83 86 0.325671 TGAGAGCCCCTTCGGAGATT 60.326 55.000 0.00 0.00 35.04 2.40
149 152 7.277174 TCCCTCTCTTTTCATGTTTTCTTTC 57.723 36.000 0.00 0.00 0.00 2.62
151 154 7.229506 TCCCTCTCTTTTCATGTTTTCTTTCTC 59.770 37.037 0.00 0.00 0.00 2.87
283 350 2.612972 CGTGGTTGTAACTGCCTCTCAT 60.613 50.000 0.00 0.00 0.00 2.90
296 363 6.628185 ACTGCCTCTCATTGAAATGAAAATC 58.372 36.000 7.13 0.00 44.20 2.17
343 410 4.670765 AGAAAATGGGAGAGCAATCTGTT 58.329 39.130 0.00 0.00 0.00 3.16
347 414 1.003580 TGGGAGAGCAATCTGTTCACC 59.996 52.381 0.00 0.00 37.55 4.02
353 420 2.415512 GAGCAATCTGTTCACCGGTAAC 59.584 50.000 6.87 12.99 0.00 2.50
402 469 3.256620 CATCAGCAGTACGCGATGA 57.743 52.632 15.93 17.46 45.95 2.92
411 478 2.348666 CAGTACGCGATGAAGGGAAAAG 59.651 50.000 15.93 0.00 0.00 2.27
430 497 3.567478 AGCCATCACCAATCTTCTACC 57.433 47.619 0.00 0.00 0.00 3.18
442 509 5.988561 CCAATCTTCTACCACTTCTGATAGC 59.011 44.000 0.00 0.00 0.00 2.97
443 510 4.902443 TCTTCTACCACTTCTGATAGCG 57.098 45.455 0.00 0.00 0.00 4.26
444 511 4.524053 TCTTCTACCACTTCTGATAGCGA 58.476 43.478 0.00 0.00 0.00 4.93
445 512 5.133941 TCTTCTACCACTTCTGATAGCGAT 58.866 41.667 0.00 0.00 0.00 4.58
446 513 6.296803 TCTTCTACCACTTCTGATAGCGATA 58.703 40.000 0.00 0.00 0.00 2.92
447 514 6.428465 TCTTCTACCACTTCTGATAGCGATAG 59.572 42.308 0.00 0.00 0.00 2.08
460 527 1.644786 GCGATAGGCGTGGTGCTTTT 61.645 55.000 0.00 0.00 45.43 2.27
470 537 2.354510 CGTGGTGCTTTTCAGAAGACAA 59.645 45.455 0.00 0.00 0.00 3.18
484 551 9.567776 TTTCAGAAGACAAAGGTTATAATGTGA 57.432 29.630 0.00 0.00 0.00 3.58
528 595 5.445939 GCTTCGATTCTCGCATTTACTCAAA 60.446 40.000 0.00 0.00 40.21 2.69
533 600 7.704899 TCGATTCTCGCATTTACTCAAATTAGA 59.295 33.333 0.00 0.00 40.21 2.10
562 629 6.664816 AGAAATCCAATAGTGGCTCATTTCAA 59.335 34.615 24.82 1.85 42.61 2.69
587 658 8.786826 AATTCGTAATTTGGTGTCTATCTGAA 57.213 30.769 0.00 0.00 0.00 3.02
598 669 8.251750 TGGTGTCTATCTGAAAGTTATTTTCG 57.748 34.615 0.00 0.00 46.65 3.46
610 681 3.055312 AGTTATTTTCGGGTCTCCTGGTC 60.055 47.826 0.00 0.00 0.00 4.02
649 720 0.107703 TGGCATGGACACCGAAGATC 60.108 55.000 0.00 0.00 0.00 2.75
663 734 5.290643 CACCGAAGATCTAGAGCAAGAAAAG 59.709 44.000 11.20 0.00 0.00 2.27
664 735 5.186021 ACCGAAGATCTAGAGCAAGAAAAGA 59.814 40.000 11.20 0.00 0.00 2.52
665 736 6.102663 CCGAAGATCTAGAGCAAGAAAAGAA 58.897 40.000 11.20 0.00 0.00 2.52
666 737 6.591834 CCGAAGATCTAGAGCAAGAAAAGAAA 59.408 38.462 11.20 0.00 0.00 2.52
667 738 7.118390 CCGAAGATCTAGAGCAAGAAAAGAAAA 59.882 37.037 11.20 0.00 0.00 2.29
668 739 8.167985 CGAAGATCTAGAGCAAGAAAAGAAAAG 58.832 37.037 11.20 0.00 0.00 2.27
706 777 5.247507 TCAAAACAGAACAACACATCCTG 57.752 39.130 0.00 0.00 0.00 3.86
742 813 1.148048 GGAAGATGCCTCTCAGCCC 59.852 63.158 0.00 0.00 0.00 5.19
743 814 1.227497 GAAGATGCCTCTCAGCCCG 60.227 63.158 0.00 0.00 0.00 6.13
744 815 3.397613 AAGATGCCTCTCAGCCCGC 62.398 63.158 0.00 0.00 0.00 6.13
748 819 2.672996 GCCTCTCAGCCCGCAAAA 60.673 61.111 0.00 0.00 0.00 2.44
749 820 2.048603 GCCTCTCAGCCCGCAAAAT 61.049 57.895 0.00 0.00 0.00 1.82
750 821 1.997928 GCCTCTCAGCCCGCAAAATC 61.998 60.000 0.00 0.00 0.00 2.17
896 973 4.266502 GCTACTAAATGACGAAGACAGCAG 59.733 45.833 0.00 0.00 34.76 4.24
929 1006 3.070018 CACACCTGAGTTGATCCAAGTC 58.930 50.000 7.40 7.40 42.29 3.01
948 1058 0.732880 CGAGCACACTTACTCCACCG 60.733 60.000 0.00 0.00 0.00 4.94
953 1063 1.614903 CACACTTACTCCACCGTACCA 59.385 52.381 0.00 0.00 0.00 3.25
999 1109 1.144057 AAGGGCGCTAACCAGATCG 59.856 57.895 7.64 0.00 0.00 3.69
1063 1173 3.839432 GACGGCCGGAAGAGAGGG 61.839 72.222 31.76 0.00 0.00 4.30
1234 1386 2.187946 CGCCATCGCCTTCTCCTT 59.812 61.111 0.00 0.00 0.00 3.36
1235 1387 1.884926 CGCCATCGCCTTCTCCTTC 60.885 63.158 0.00 0.00 0.00 3.46
1236 1388 1.884926 GCCATCGCCTTCTCCTTCG 60.885 63.158 0.00 0.00 0.00 3.79
1237 1389 1.884926 CCATCGCCTTCTCCTTCGC 60.885 63.158 0.00 0.00 0.00 4.70
1238 1390 1.884926 CATCGCCTTCTCCTTCGCC 60.885 63.158 0.00 0.00 0.00 5.54
1239 1391 2.060980 ATCGCCTTCTCCTTCGCCT 61.061 57.895 0.00 0.00 0.00 5.52
1240 1392 1.617947 ATCGCCTTCTCCTTCGCCTT 61.618 55.000 0.00 0.00 0.00 4.35
1241 1393 1.811679 CGCCTTCTCCTTCGCCTTC 60.812 63.158 0.00 0.00 0.00 3.46
1314 1472 1.505353 GTACCTCACCGACTCCGTG 59.495 63.158 0.00 0.00 0.00 4.94
1352 1510 2.357517 CTGCGACGGCTTCAGGTT 60.358 61.111 0.00 0.00 40.82 3.50
1419 1577 1.885887 GGCAACTTGAGTACATTGGCA 59.114 47.619 12.34 0.00 44.56 4.92
1520 1678 2.290367 TGTGCATCCGTGAGTTTGAAAG 59.710 45.455 0.00 0.00 0.00 2.62
1548 1706 9.720769 TCCTTGTCTGTTTTACTCCTTTATTAG 57.279 33.333 0.00 0.00 0.00 1.73
1591 1754 6.645705 TGTACGTACGTATATCAACTTACGG 58.354 40.000 29.05 0.00 46.11 4.02
1709 1872 0.249699 TTGGCGTGCTCTCGAAAAGA 60.250 50.000 0.00 0.00 0.00 2.52
1711 1874 0.440371 GGCGTGCTCTCGAAAAGAAG 59.560 55.000 0.00 0.00 32.23 2.85
1712 1875 1.419374 GCGTGCTCTCGAAAAGAAGA 58.581 50.000 0.00 0.00 32.23 2.87
1713 1876 1.792949 GCGTGCTCTCGAAAAGAAGAA 59.207 47.619 0.00 0.00 32.23 2.52
1714 1877 2.159907 GCGTGCTCTCGAAAAGAAGAAG 60.160 50.000 0.00 0.00 32.23 2.85
1782 1945 7.869937 CAGTCGAATTCCTGTATGTCTATCATT 59.130 37.037 0.00 0.00 37.91 2.57
1816 1979 3.787634 CGCACTGCATGTATGTCAATTTC 59.212 43.478 1.11 0.00 0.00 2.17
1878 2048 1.339247 CGGGTTGGCCTTGTATGTACA 60.339 52.381 3.32 0.00 34.45 2.90
1879 2049 2.365582 GGGTTGGCCTTGTATGTACAG 58.634 52.381 3.32 0.00 37.52 2.74
1884 2054 2.640332 TGGCCTTGTATGTACAGTGGAA 59.360 45.455 3.32 0.00 37.52 3.53
1885 2055 3.270877 GGCCTTGTATGTACAGTGGAAG 58.729 50.000 0.33 1.10 37.52 3.46
2034 3074 7.336931 ACACTATGGTTAACTGATCCATTGAAC 59.663 37.037 5.42 0.00 41.45 3.18
2061 3101 6.130298 CAGTGTTCACAATTCCACTGTAAA 57.870 37.500 9.80 0.00 46.05 2.01
2411 3451 7.610580 ATTCAATCCCCAAGTTCTAACAAAA 57.389 32.000 0.00 0.00 0.00 2.44
2596 3636 7.173218 ACTGTAACATACACTTTGATTCCACTG 59.827 37.037 0.00 0.00 34.46 3.66
2682 3722 3.805823 TGAAAGTTCGCTGAAATTACGC 58.194 40.909 4.85 0.00 29.66 4.42
2683 3723 3.496884 TGAAAGTTCGCTGAAATTACGCT 59.503 39.130 4.85 0.00 29.66 5.07
2684 3724 4.024387 TGAAAGTTCGCTGAAATTACGCTT 60.024 37.500 4.85 0.00 29.66 4.68
2685 3725 4.483476 AAGTTCGCTGAAATTACGCTTT 57.517 36.364 2.94 0.00 27.95 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.414272 CGCAAGGTGCCATAGCTC 58.586 61.111 0.00 0.00 41.12 4.09
35 38 1.750572 GCGCAATCTCACAGCTCTCG 61.751 60.000 0.30 0.00 0.00 4.04
76 79 4.623167 CGGCAATCTCATAGTAAATCTCCG 59.377 45.833 0.00 0.00 0.00 4.63
83 86 5.593095 ACACTAGTCGGCAATCTCATAGTAA 59.407 40.000 0.00 0.00 0.00 2.24
121 124 8.078060 AGAAAACATGAAAAGAGAGGGAAAAA 57.922 30.769 0.00 0.00 0.00 1.94
126 129 7.230309 AGAGAAAGAAAACATGAAAAGAGAGGG 59.770 37.037 0.00 0.00 0.00 4.30
149 152 7.377398 TCAAGTGATCAAGAGAGAGAAAAGAG 58.623 38.462 0.00 0.00 0.00 2.85
283 350 3.305950 CGGTGCCTGGATTTTCATTTCAA 60.306 43.478 0.00 0.00 0.00 2.69
296 363 2.672996 CTTCCAACCGGTGCCTGG 60.673 66.667 16.44 16.44 0.00 4.45
347 414 3.738830 TCTTATCAATCCCCGTTACCG 57.261 47.619 0.00 0.00 0.00 4.02
353 420 1.808945 GCTGCATCTTATCAATCCCCG 59.191 52.381 0.00 0.00 0.00 5.73
402 469 2.397044 TTGGTGATGGCTTTTCCCTT 57.603 45.000 0.00 0.00 0.00 3.95
411 478 2.945668 GTGGTAGAAGATTGGTGATGGC 59.054 50.000 0.00 0.00 0.00 4.40
430 497 2.030717 ACGCCTATCGCTATCAGAAGTG 60.031 50.000 0.00 0.00 43.23 3.16
442 509 0.373716 GAAAAGCACCACGCCTATCG 59.626 55.000 0.00 0.00 44.04 2.92
443 510 1.398390 CTGAAAAGCACCACGCCTATC 59.602 52.381 0.00 0.00 44.04 2.08
444 511 1.003118 TCTGAAAAGCACCACGCCTAT 59.997 47.619 0.00 0.00 44.04 2.57
445 512 0.394938 TCTGAAAAGCACCACGCCTA 59.605 50.000 0.00 0.00 44.04 3.93
446 513 0.465460 TTCTGAAAAGCACCACGCCT 60.465 50.000 0.00 0.00 44.04 5.52
447 514 0.040067 CTTCTGAAAAGCACCACGCC 60.040 55.000 0.00 0.00 44.04 5.68
460 527 8.375506 ACTCACATTATAACCTTTGTCTTCTGA 58.624 33.333 0.00 0.00 0.00 3.27
484 551 5.078411 AGCGATGAACTTAGAATGACACT 57.922 39.130 0.00 0.00 0.00 3.55
533 600 8.773033 AATGAGCCACTATTGGATTTCTATTT 57.227 30.769 2.72 0.00 43.53 1.40
562 629 8.786826 TTCAGATAGACACCAAATTACGAATT 57.213 30.769 0.00 0.00 0.00 2.17
578 645 7.848128 AGACCCGAAAATAACTTTCAGATAGA 58.152 34.615 0.00 0.00 43.22 1.98
587 658 3.329814 ACCAGGAGACCCGAAAATAACTT 59.670 43.478 0.00 0.00 37.58 2.66
598 669 0.606673 GCTTGTTGACCAGGAGACCC 60.607 60.000 0.00 0.00 0.00 4.46
610 681 2.414481 CAGTCTGATTCCGAGCTTGTTG 59.586 50.000 0.00 0.00 0.00 3.33
649 720 8.835439 AGAGTTTCTTTTCTTTTCTTGCTCTAG 58.165 33.333 0.00 0.00 0.00 2.43
663 734 7.897575 TTGATCTAGCTGAGAGTTTCTTTTC 57.102 36.000 0.00 0.00 37.70 2.29
664 735 8.563732 GTTTTGATCTAGCTGAGAGTTTCTTTT 58.436 33.333 0.00 0.00 37.70 2.27
665 736 7.716998 TGTTTTGATCTAGCTGAGAGTTTCTTT 59.283 33.333 0.00 0.00 37.70 2.52
666 737 7.220030 TGTTTTGATCTAGCTGAGAGTTTCTT 58.780 34.615 0.00 0.00 37.70 2.52
667 738 6.763355 TGTTTTGATCTAGCTGAGAGTTTCT 58.237 36.000 0.00 0.00 37.70 2.52
668 739 6.870965 TCTGTTTTGATCTAGCTGAGAGTTTC 59.129 38.462 0.00 0.00 37.70 2.78
706 777 1.961394 TCCGAGGTACAGTATGGATGC 59.039 52.381 0.00 0.00 43.62 3.91
742 813 3.951306 TGTTCTGTTGAGTGATTTTGCG 58.049 40.909 0.00 0.00 0.00 4.85
743 814 5.332808 GCATTGTTCTGTTGAGTGATTTTGC 60.333 40.000 0.00 0.00 0.00 3.68
744 815 5.981315 AGCATTGTTCTGTTGAGTGATTTTG 59.019 36.000 0.00 0.00 0.00 2.44
748 819 5.182001 GGTAAGCATTGTTCTGTTGAGTGAT 59.818 40.000 0.00 0.00 0.00 3.06
749 820 4.515191 GGTAAGCATTGTTCTGTTGAGTGA 59.485 41.667 0.00 0.00 0.00 3.41
750 821 4.516698 AGGTAAGCATTGTTCTGTTGAGTG 59.483 41.667 0.00 0.00 0.00 3.51
896 973 3.127533 GGTGTGGCGTGCTCATCC 61.128 66.667 0.00 0.00 0.00 3.51
929 1006 0.732880 CGGTGGAGTAAGTGTGCTCG 60.733 60.000 0.00 0.00 37.36 5.03
948 1058 4.894784 TCAACTTGGATCAACTCTGGTAC 58.105 43.478 0.00 0.00 0.00 3.34
953 1063 3.181451 TGTGCTCAACTTGGATCAACTCT 60.181 43.478 0.00 0.00 0.00 3.24
983 1093 0.946221 CATCGATCTGGTTAGCGCCC 60.946 60.000 2.29 0.00 0.00 6.13
999 1109 1.523758 ACGTCAGGAGCAAAACCATC 58.476 50.000 0.00 0.00 0.00 3.51
1050 1160 3.706373 TGTGCCCTCTCTTCCGGC 61.706 66.667 0.00 0.00 43.32 6.13
1088 1240 4.577246 GCGAGGAGGTAGCCGCTG 62.577 72.222 2.16 0.00 43.75 5.18
1230 1382 3.939837 CTGCTGCGAAGGCGAAGGA 62.940 63.158 0.00 0.00 43.65 3.36
1231 1383 3.494336 CTGCTGCGAAGGCGAAGG 61.494 66.667 0.00 0.00 43.65 3.46
1232 1384 4.157958 GCTGCTGCGAAGGCGAAG 62.158 66.667 0.00 0.00 46.30 3.79
1284 1442 1.443872 GAGGTACGGAGCACACGTG 60.444 63.158 15.48 15.48 45.20 4.49
1287 1445 1.080025 GGTGAGGTACGGAGCACAC 60.080 63.158 17.76 17.76 42.01 3.82
1290 1448 2.034532 TCGGTGAGGTACGGAGCA 59.965 61.111 0.00 0.00 34.17 4.26
1332 1490 3.485431 CTGAAGCCGTCGCAGCAG 61.485 66.667 0.00 0.00 37.52 4.24
1489 1647 2.350804 CACGGATGCACATGAGAAGAAG 59.649 50.000 0.00 0.00 0.00 2.85
1491 1649 1.550072 TCACGGATGCACATGAGAAGA 59.450 47.619 0.00 0.00 0.00 2.87
1520 1678 8.794335 ATAAAGGAGTAAAACAGACAAGGATC 57.206 34.615 0.00 0.00 0.00 3.36
1548 1706 8.557869 ACGTACAAATGAATCTCTTATACGAC 57.442 34.615 10.85 0.00 37.07 4.34
1550 1708 8.616425 CGTACGTACAAATGAATCTCTTATACG 58.384 37.037 24.50 3.24 38.95 3.06
1702 1865 3.996480 AGACACTCCCTTCTTCTTTTCG 58.004 45.455 0.00 0.00 0.00 3.46
1709 1872 7.363094 CGACTTCTAAATAGACACTCCCTTCTT 60.363 40.741 0.00 0.00 30.81 2.52
1711 1874 6.095160 TCGACTTCTAAATAGACACTCCCTTC 59.905 42.308 0.00 0.00 30.81 3.46
1712 1875 5.950549 TCGACTTCTAAATAGACACTCCCTT 59.049 40.000 0.00 0.00 30.81 3.95
1713 1876 5.357596 GTCGACTTCTAAATAGACACTCCCT 59.642 44.000 8.70 0.00 30.81 4.20
1714 1877 5.357596 AGTCGACTTCTAAATAGACACTCCC 59.642 44.000 13.58 0.00 30.81 4.30
1782 1945 1.743623 CAGTGCGCGGGGAACATAA 60.744 57.895 8.83 0.00 0.00 1.90
1816 1979 1.002430 CCCGGGTGTGATATCAGATGG 59.998 57.143 14.18 8.48 0.00 3.51
1898 2938 4.302559 ACCATTTCAAGACTAGAACCCC 57.697 45.455 0.00 0.00 0.00 4.95
1899 2939 5.768164 TGAAACCATTTCAAGACTAGAACCC 59.232 40.000 0.00 0.00 45.94 4.11
1979 3019 4.063689 CCAATTGTTTGTATTGCAAGCCA 58.936 39.130 4.94 0.48 37.48 4.75
2145 3185 7.413446 AGATGATTGGAATTTTTCTCCCACTA 58.587 34.615 0.00 0.00 31.32 2.74
2411 3451 0.746659 GTTTGGTTGCAAGCTCCAGT 59.253 50.000 27.31 0.00 32.63 4.00
2476 3516 5.570320 AGTACTTCCACTGTAAATGGCAAT 58.430 37.500 0.00 0.00 37.13 3.56
2654 3694 7.914537 AATTTCAGCGAACTTTCAGTTTAAG 57.085 32.000 0.00 0.00 38.80 1.85
2658 3698 5.440685 CGTAATTTCAGCGAACTTTCAGTT 58.559 37.500 0.00 0.00 41.95 3.16
2659 3699 4.610680 GCGTAATTTCAGCGAACTTTCAGT 60.611 41.667 0.00 0.00 0.00 3.41
2660 3700 3.840763 GCGTAATTTCAGCGAACTTTCAG 59.159 43.478 0.00 0.00 0.00 3.02
2661 3701 3.496884 AGCGTAATTTCAGCGAACTTTCA 59.503 39.130 0.00 0.00 35.78 2.69
2662 3702 4.066710 AGCGTAATTTCAGCGAACTTTC 57.933 40.909 0.00 0.00 35.78 2.62
2663 3703 4.483476 AAGCGTAATTTCAGCGAACTTT 57.517 36.364 0.00 0.00 35.78 2.66
2664 3704 4.483476 AAAGCGTAATTTCAGCGAACTT 57.517 36.364 0.00 0.00 35.78 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.