>input_sequence_71784
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---------------------------------------------------------------------ATGGTTTTGCT
CCTGACGTACGCCGCACTCGCAGCGGCGACGATGCGACGGCCGGAAGAGAGGGCACACCTC-------------------
-----------------------GCCGAAGCCGAACCGGCAGCGGCTACCTCCTCGCCGGCGCCGGCTCCACCGTACACC
GGCGTCTCGGTCTTCATCCCGGCACCGCCGCCTCTGCCTGGCATGCCCGCGTTACCGCCGTTGCCCGGCTTCCCGGGCAT
GGCAGGCGCGCCATCGCCTTCTCCTTCGCCTTCGC------AGCAGCCGGCCAGTTGCTTGGGAGCGCTCGGGCGTGTGA
TCACGTGTGCTCCGTACCTCACCGACTCCGTGCCCGCGCCGCCGAGTACCTGCTGCGACGGCTTCAGGTTGCTCGTCGGC
AGCAGCGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACTTGAGTACATTGGCAGGGGGGGAGATCGACCAGCTTCG
CTTGCTCGTGCTGCCTCTGACGTGTAGCACGTTCGTCCCCCCGGACCTTCTTCTCATGTGCATCCGTGAGTTTGAAAGAT
CCTTGTCTGTTTTACTCCTTTATTAGTCGTA-----TAAGAGATTCATTTGTACGTACGTATATCAACTTACGGAATAAA
CTGTCTTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACGACCGCGCCGGTGTCGGAGAAAGGCTCGGTGCTCTCG
GCGGCTAG------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G191300
CTAGAGCTATGGCACCTTGCGG--GGGGCAAATGCATCGAGAGCTGTGAGATTGCGCCAAATGCATTGAGAGCCCCTTCG
GAGATTTACTATGAGATTGCCGACTAGTGTTAGGCCTACGGGCTTTTTCCCTCTCTTTTCATGTTTTCTTTCTCTTTTCT
CTCTCTTGATCACTTGATCACCCCATGTTTTCATGCTACCACTGCTAACCAGCAAGATGCT-------------------
---------------------------------------------AGGCCACGCCGGGCTGTAGGGCAATTTCCTCTGTT
CACTCTGCCGTGGTTGTAACTGCCTCTCATTGAAATGAAAATCCAGGCACCGGTTGGAAGTTTCAGAAGAAAATGGGAGA
GCAATCTGTTCACCGGTAACGGGGATTGATAAGATGCAGCTTGGACGACTCATCAGCAGTACGCGATGAAGGGAAAAGCC
ATCACCAATCTTCTACCACTTCTGATAGCGATAGGCGTGGTGCTTTTCAGAAGACAAAGGTTATAATGTGAGTGTCATTC
TAAGTTCATCGCTTCGATTCTCGCATTTACTCAAATTAGAAATAGAAATCCAATAGTGGCTCATTTCAAATTCGTAATTT
GGTGTC----TATCTGAAAGTTATTTTCGGGTCTCCTGGTCAACAAGCTCGGAATCAGACTGGCATGGACACCGAAGATC
TAGAGCAAGAAAAGAAAAGAAACTCTCAGCTAGATCAAAACAGAACAACACATCCTGCATCCATACTGTACCTCGGAAGA
TGCCTCTCAGCCCGCAAAATCACTCAACAGAACAATGCTTACCTACTCTCAGTAACCTCCAAGGAAATTGTAAAGAACGT
GAGTCGCGCCTACGGTTCAGTC------AAACAAAGACAAAGATGATGATGAATTGACGCCCGGACGCCGCTACTAAATG
ACGAAGACAGCAGGATGAGCACGCCACACCTGAGTTGATCCAAGTCGAGCACACTTACTCCA------------------
---------------CCGTACCAGAGTTGATCCAAGTTGAGCACACTTGCAAGGGCGCTAACCAGATCGATGGTTTTGCT
CCTGACGTACGCCGCACTCGCAGCGGCGACGATGCGACGGCCGGAAGAGAGGGCACACCTC-------------------
-----------------------GCCGAAGCCGAACCGGCAGCGGCTACCTCCTCGCCGGCGCCGGCTCCACCGTACACC
GGCGTCTCGGTCTTCATCCCGGCACCGCCGCCTCTGCCTGGCATGCCCGCGTTACCGCCGTTGCCCGGCTTCCCGGGCAT
GGCAGGCGCGCCATCGCCTTCTCCTTCGCCTTCGC------AGCAGCCGGCCAGTTGCTTGGGAGCGCTCGGGCGTGTGA
TCACGTGTGCTCCGTACCTCACCGACTCCGTGCCCGCGCCGCCGAGTACCTGCTGCGACGGCTTCAGGTTGCTCGTCGGC
AGCAGCGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACTTGAGTACATTGGCAGGGGGGGAGATCGACCAGCTTCG
CTTGCTCGTGCTGCCTCTGACGTGTAGCACGTTCGTCCCCCCGGACCTTCTTCTCATGTGCATCCGTGAGTTTGAAAGAT
CCTTGTCTGTTTTACTCCTTTATTAGTCGTA-----TAAGAGATTCATTTGTACGTACGTATATCAACTTACGGAATAAA
CTGTCTTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACGACCGCGCCGGTGTCGGAGAAAGGCTCGGTGCTCTCG
GCGGCTAGGCCATTGGCGTGCTCTCGAAAAGAAGAAGGGAGTGTCTATTTAGAAGTCGACTGAAATTGAATTAGGCTTCA
GTCGAATTCCTGTATGTCTATCATTTATGTTCCCCGCGCACTGCATGTATGTCAATTTCCATCTGATA--TCACACCCGG
GCCTTGTATGCATGTGCGTTGACGGGTTGGCCTTGTAT-----GTACAGTGGAAGTCGCGA-------------------
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---------------------------------------------------AAAAAAGGGGTTCTAGTCTTGAAATGGTT
TCAAAATAGATGCAATACTACCCAACAAAGACAAACCCAAAAGAAAACTGATTCTAAATGGCTTGCAATACAAACAATTG
GAAAAAAACACTATGGTTAACTGATCCATTGAACTTACAGTGTTCACAATTCCACTGTAAATTACAGTGGAAGTACTATG
TAAATTCCACTACTGTTTACAGTGCAACTACTCTGCAAATTACACTCTACTAACACTAGAATTATAGTGGGAGAAAAATT
CCAATCATCTAGCATATACACCAGCAAAAGAATCCTTTCAGGCTAGGGAAATGAACTGAAAATTTACAGTAGATAAAACA
CCAGAAATTACTGTCACATTCTATTGTAATTTCTTGCTAGTCAAACAGTAAAATCAAGTTCACAACAATAACAATCGCCA
ACATGGACAAACAAATATAAATGGTTTCTAAAAATGGATGCAATCCCTTCTAACAAACCCCAACAAATTCAATCCCCAAG
TTCTAACAAAACTGGAGCTTGCAACCAAACAAGAAAAGCAAAACTGCTCCACTGAAATTACAGTGTTCACAATTCATTGC
CATTTACAGTGGAAGTACTTTGTAAATTACACTGTAAATAAAGAAAAAAAAATCACTGTGAATGACACTAGAATTACAGT
GGGAGTTGCACTGTAACATACACTTTGATTCCACTGTAATTTACAAAGTTATTACACTATAATTACAGTAATTTTCTCTG
TAAATTCAATTTACTTAAACTGAAAGTTCGCTGAAATTACGCTTT
>chr2D_1
CTACAGCTATGGCACCTTGCCGGTGGGGCAAATGCATTGAGAGCTGTGAGATTGCGCCAAATGCATTGAGAGCCCCTTTG
GAGATATACTATGAGATTGCCGACTAGTGTTAGGCCTACGGGCCTTTTTCATCTCTTTTCATGTTTTCTTTTTTTTTTTC
CTCTCTTGATCACTTGATCACCCCATGTTTTCATGCTACCCCTGCTAACCAGCAAGATGCTGGATCTCTCTCTCTCTCTC
TCTCTCTCTCACACACACACACACACACACGACTGCTGAGGTGAAAGGCCACGCCGGGCTGTAGGGCAATTTCCTCTGTT
CACTCTGCCGTGGTTGTAACTGCCTCTCACTGAAATGAAAATTCAGGCACCGGTTGGAAGTTTCAGAAGAAAATGGGAGA
GCAATCTGTCCACAGGTAAAGGGGATTGATAAGATGCAGCTTGGACGACTCATCAGCAGTACGCGATGCAGGGAAAAACC
ATCACCAATCTTCTACTACTTCTGATAG------GCGTGGTGCTTTCCAGAAGACAGAGGTTATAATGTGGGTGTCATTC
TAAGTTCATCGCTTCGATTCTCGCATTTACTCAAGTTAGGAATAGAAATCCAATAGTGGCTCATTTCAGATTCGTAATTT
GGTGGCTATATATCTGATAGTTATTTTCCGGTCTCCTGGTGAACAAGCTCGGAATCAGACTGGCATGGACACCGAAGATT
TAGAGCAAGAAAAC-----AAACTCTCAGCTAGATCAAAACAGAACAACACATCCTACATCCATACTGTACCTCGGAAGA
TGCCTCTCAGCCGCAAAATG-ACTCAACAGAACAATGCTTACCTACTCTCAGTAACCTCCAAGGAAATTGTAAAGAACGT
GAGTCGCGCCTACGGTTCAGTCAAACAAAAACAAAGACAAAGATGATGATGAATTGACGCCCGGACGCCGCTACTAAATG
ACGAAGACAGCAAGATGAGCACGCCACACCTGAGTTGATCCAAGTTGAGCACACTTACTCCATACCTGAGTTGATCCAAG
TTGAGCACACTTACTCCATACCTGAGTTGATCCAAGTTGAGCACACTTGCAATGGCGCTAACCAGATCAATGGTTTTGCT
CCTGACGTACGCCGCACTCGCAGCGGCGACGATGCGACGACCGGAAGAGAGGACACAGGCGGTCAAGGCGCCATCAGTGC
CATACCTCGCCGGAGGCCAAGAAGCCGAAGCCGAAGCGGTAGCGGCTACCTCCTCGCCGGCCTCACCAAT------CACC
GACGTCGAGGTCTTCATCCCGGCACCGCCGCCTCTGCCTGGCATGCCCGCGTTACCGCCGTTGCCCGGCTCCCCGGGCAT
GGCAGGCGCGCCATCGCCTTC------------GC------AGCAGCCGGCCAGTTGCTTGGGAGCGCTCGGGCGTGTGA
TAACATGCGCGCCGTACCTCACCGACTCCGTACCCGTGCCGCCGAGTACATGCTGCGACGGCTTCAGGTCGCTCGTCGGC
AGCAGCGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACTTGAGTACATTGGCCGGGGGGGAGATCGACCAGCTTCG
CTTGCTCGTGCTGCCTCTGACGTGTAGCACGTTCGTGCCCCCGGACTTGCTTCTCATGTGCATCCGTGAGTTTGAAACAT
CCTTGTCTGCTTTACTCCTTTATTACTAGTACATCGTAAGAGATTCATTTGTATGTACGTATATCAACTTACGAAATAAA
CTGTCTTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACTACCGCGCCGGTGTCGGAGAAAGGCTCGGTGCTCTCG
GCGGCTAGGCCATTGGCGTGCTCTGGAAAAGGA----GGAGTGTCTATTTAGAAGTCGACTGAAATTGAATTAGGCTTCA
GTCGAATTCCTGTATGTCTATCATCTATGTTCCCCGCGCACTGCATGTATGTCAATTTTCATCTGATATCTCACACCCGG
GCCTTGTATGCATGTGC-TTGACGGGTTGGCCTTGTATTGTATGTACGCTGGACTGGACCCGCTACCAAAACAGCAGAAC
AAAAACTACAGGGGGAAAAGCCTACAGACTCAACAACTGAGTCCTCAGAACACCTTATGCGCAAAAAAAAAAGAGTCCTC
AGAACACCTAAACTAATGGGGCTCAAAAAAAGACTATGGACATGCGCTAGTACCACGCTGAACATTATTGCCAGCAAAAA
GAAGAGGCAAACGGACCAAAAAGACACCCAATCAACTTGCTTCTCTTGCAAAAAATAGAGGCTTCTACAAACTCAAAAAC
ATAAAACCTCTCCTTCTTTGCCTCTGAACACAATACTGTAGTAAGAAGGAACAATAAATAAGTTACAGTGTAATTACATT
AAAGCTACCCCGCAAAAAAATTTACATTAAAGCTGTGATTACACTGAAAATTATCAGTGTAATTACATTAGAAAACACCG
TGATTACACTATAATTCACAAATGTAATTACACTTAAAATACAGTGTAATCACTGTTCAATTTTACTGCATATACCCTAT
GATATAGAATGAAATTATACTTTTTTTTACAAATGTCAAAGAATCCCGCTAATTACACTGTTTAACCCTTACATTGTAAA
ATTAGGCAATTACAATCTTGTTCACAGAGAGTTCCAGCCATAAAACACAGTAAATTGACATTTTCAGATATTACATTTTG
TGGTAAAGGTTGACATTTAGATACAGAGACTTTATTTGCATTCTTGCTATTGACATGTTGCAGATAGTTTAATCTGTTGA
CATGTTCAAAATTTCCATGCACACACAGGAAACTGTGGGCTCATGTTGACAATCAGTCCTTAAACCTGCCACTTACTTCA
GTTCAAACATGCCAATCTTGGTTTGGATGCACCAAACAAAGGCAACTCGCGAAAAAAAAGGTTCTAGTCTTCAAATGGTT
TCAAAATAGATGCAATACTACCCAACAAAGACAAACCCAAAAGAAAACTGATTCTAAAAGGCTTGCAATACAAATAATTG
GAAAAAAACACTATGGTTAACTGATCCATTGAATTTACAGTGTTCACAATTCCACTGTAATTTACAGTGGAAGTACTATG
TAAATTCCACTGCTGTTTACAGTGCAACTACTCTGCAAATTACACTCTACTAACACTAGAATTACAGTGGGAGAAAAATT
CCAATCATCTAGCATATACACCAGCAAAAGAAGCCTTTCAGGCTAGGGAAATGAACTGAAAATTTACAGTAGATAAAACA
CCAGAAATTACTGTCACATCCTATTGTAATTTCTTGCTAGTCAAACAGTAAAATCAAGTTCACAACAATAACAATCACCA
ACATGGACAAACAAATATAAATGGTTTCTAAAAATGGATCCAATCCCTTCTAACAAACCCCAACAAATTCAATCCCCAAG
TTCTAACAAACCCGGAGCTTGCAACCAAACAAGAAAAGCAAAACTGCTCCACTGAAATTACAGTGTTCACAATTCTTTGC
CATTT---GTGGAAGTACTTTGTAAATTACACTGTAAATAAAGAAAAA-AAATCACTGTGAATGACACTAGAATTACAGT
GGGAGTTGCACTGTAACATACACTTTGATTCCACTATAATTTACAAAGTTATTACACTATAATTACAGTAATTTTCTCTG
TAAATTCAATTTAATTA----------------------------
>chr2B_1065
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-----------------------------------------------------CACACCTC-------------------
-----------------------GCCGAAGCCGAACCGGTAGCGGCTACCTCCTCGCCGGCTT------CACCGTACACC
GGCGTCTCGGTCTTCATCCCGGCACCGCCGCCTCTACCTGGCGTGCCCGCGTTACCGCCGTTGCCCGGCTTCCCGGGCAT
GGCAGGCGCGCCTTCGCCTTC------------GCCTTCGCAGCAGCTGGCCAGTTGCTTGGGACCGCTCGGGCGTGTGA
TAACTTGCGCTCCGTACCTCACCGACTCCGTACCCGCGCCGCCGAGTACATGCTGCGACGGCTTCAGGTCGCTCGTCGGC
AGCAGCGCCCGGATCTGCTTGTGCCATGCCATCATCGGCAACCTGAGTACATTGGCCAGGGGGGAGATCGACCAGCTTCG
CTTGCTCGTGCTGCCTCTGACGTGTAGCACGATCGTGCCCCCGGACTTGCTTCTCATGTGCATCCGTGAGTTTGAAACAT
CCTTGTCTGTTTTACTCCTTTCTTAC------ATCGTAAGAGATTCATTTGAACGTACGTATATCAACTTACCAAATGAA
CTGTCTTGCAGTGTCTCCGGTGCCGCCGATTATGCCTCAGCACTACGGCGCCGATGTCAGAGAAAGGCTCGGTGCTCTGG
GCGGCTAGGCCATTGGCGTGCTCAGA------A----GGAGTGTCTATTTAGAAGTCGACTGAAATTGAATTAGGCTTCA
GTCGAGTTCATGTATGTCTATCATCTATGTTCCCCGCGCACTGCATGTATGTCGATTTTCATCTGATA--TCACACCCGG
GCCTTGTATGCATGTGTGTTGACAGGTTGGCCT-GTAT-----GTACGCTGGA---------------------------
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>chr2B_1887
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-------------------------------------------------------TCGCGA-------------------
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---------------------------------------------------AAAAAAAAGGTTCTAGTCTTCAAATGGTT
TCAAAATAGATGCAATACTACCCAACAAAGACAAACCCAAAAGAAAACTGATTCTAAAAGGCTTGCAATACAGACAATTG
AAAAAAAA-ACTATGGTTAACTGAT----TGAATTTACAGTGTTCACAATTCCACTGTGATTTACAGTGGAAGTACTATG
TAAATTCCGCTGCTGTTTACAGTGCAACT----------------------AACACTATAATTGCAGTGGGAGAAAAATT
CCAATCATCTAGCATATACACCAGCAAAAGAATCCTTTCAGGCTAGGGAAATGAACTGAAAATTTACAGTAGATAAAACA
CCA--AATTACTGTCACATTCTATTGTAATTTCTTGCTAGTCAAACAGTAAAATCAAGTTCACAACAATAACAATCGCCA
ACATGGACAAACAAATATAAATGGTTTCTAAAAATGGATGCAATCCCTTCTAACAAACCACAACAAATTCAATCCCCAAG
TTCTAACAAACCTGGAGCTTGCAACCAAACAAGAAAAGCAAAACTGCTCCACTGAAATTACAGTGTTCACAATTCCTTGC
CATTTACAGTGGAAGTACTTTGTGAATTACACTGTAA-------------------------------------------
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>SNPs
---S----------------S----------------S----------------------------------------S-
-----S-------------------------------------S----S-S--------------------S-S----SS
----------------------------------------S---------------------------------------
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-----------------------------S------------S-------------------------------------
---------S---S-----S------------------------------------------------S--------S--
----------------S-----------SSSSSS------------S---------S-------------S---------
----------------------------------S----S----------------------------S-----------
----S------------S----------S-----------S--------------------------------------S
-------------SSSSSS-------------------------------------S-----------------------
------------SSS---SSS-----------------------------------------------------------
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------------S--------------------------------S----------------------------------
-----------------S----S-----------------------------S---------------S-----------
---------------------------------------S------------S---------------------------
---------------------------------------S---------------------SS-SS-SS-----------
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---------------------SSSSSSSSSSSS-----------------------------------------------
-S--S--S-----------------------S-----------------S-------------------S----------
--------------------------------------------------------S-----------------------
------------------------------------S---------S-S----------------------------S--
-------------------------S-S---------------------------------------------S------
-------------------------------------------S------------------------------------
------------------------S------S-SSSS-------------------------------------------
------------------------S---------------------------------S---------------------
-----------------------------------------------SS----SS-------------------------
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---------------------------------------------------------SS------------S--------
----------------------------------------------------------S---------------------
---------------------------------S--------------------------S-------------------
-----------S----------------------------------------------------S---------------
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----------S----------------------------------------------------------------S----
------------------------------------------------S-------------------------------
-----------------------------------S--------------------------------------------
-------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_21
-TAGAGCTATGGCACCTTGCG-----------------------------------------------------------
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>reverse_1979
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----------------------------------------------------------CCATCTGATATCACACCCGGG-
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