Multiple sequence alignment - TraesCS2A01G188500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G188500 | chr2A | 100.000 | 1972 | 0 | 0 | 977 | 2948 | 153452268 | 153454239 | 0.000000e+00 | 3642.0 |
1 | TraesCS2A01G188500 | chr2A | 100.000 | 494 | 0 | 0 | 1 | 494 | 153451292 | 153451785 | 0.000000e+00 | 913.0 |
2 | TraesCS2A01G188500 | chr2B | 93.022 | 1519 | 60 | 18 | 977 | 2480 | 208211871 | 208210384 | 0.000000e+00 | 2176.0 |
3 | TraesCS2A01G188500 | chr2B | 87.568 | 917 | 93 | 11 | 977 | 1887 | 573974789 | 573975690 | 0.000000e+00 | 1042.0 |
4 | TraesCS2A01G188500 | chr2B | 89.655 | 464 | 45 | 2 | 1426 | 1887 | 573985068 | 573985530 | 3.270000e-164 | 588.0 |
5 | TraesCS2A01G188500 | chr2B | 91.636 | 275 | 6 | 5 | 222 | 494 | 208212150 | 208211891 | 6.000000e-97 | 364.0 |
6 | TraesCS2A01G188500 | chr2B | 82.500 | 240 | 23 | 11 | 1934 | 2158 | 573985877 | 573986112 | 3.000000e-45 | 193.0 |
7 | TraesCS2A01G188500 | chr2B | 82.083 | 240 | 23 | 12 | 1934 | 2158 | 573976039 | 573976273 | 1.400000e-43 | 187.0 |
8 | TraesCS2A01G188500 | chr2B | 90.083 | 121 | 8 | 4 | 19 | 138 | 208212631 | 208212514 | 1.410000e-33 | 154.0 |
9 | TraesCS2A01G188500 | chr2B | 79.518 | 249 | 18 | 15 | 249 | 484 | 573938869 | 573939097 | 2.370000e-31 | 147.0 |
10 | TraesCS2A01G188500 | chr2B | 79.518 | 249 | 18 | 15 | 249 | 484 | 573974524 | 573974752 | 2.370000e-31 | 147.0 |
11 | TraesCS2A01G188500 | chr2B | 90.566 | 53 | 3 | 2 | 132 | 184 | 208212195 | 208212145 | 5.270000e-08 | 69.4 |
12 | TraesCS2A01G188500 | chr2D | 95.531 | 1186 | 40 | 6 | 977 | 2153 | 148856437 | 148855256 | 0.000000e+00 | 1884.0 |
13 | TraesCS2A01G188500 | chr2D | 86.551 | 751 | 67 | 18 | 1147 | 1889 | 490117855 | 490118579 | 0.000000e+00 | 797.0 |
14 | TraesCS2A01G188500 | chr2D | 80.902 | 843 | 89 | 39 | 1934 | 2735 | 490118845 | 490119656 | 1.510000e-167 | 599.0 |
15 | TraesCS2A01G188500 | chr2D | 91.273 | 275 | 6 | 6 | 222 | 494 | 148856723 | 148856465 | 2.790000e-95 | 359.0 |
16 | TraesCS2A01G188500 | chr2D | 90.950 | 221 | 16 | 2 | 2260 | 2480 | 148816655 | 148816439 | 7.990000e-76 | 294.0 |
17 | TraesCS2A01G188500 | chr2D | 91.848 | 184 | 6 | 6 | 1 | 184 | 148856892 | 148856718 | 6.310000e-62 | 248.0 |
18 | TraesCS2A01G188500 | chrUn | 85.699 | 916 | 83 | 24 | 977 | 1889 | 13023467 | 13024337 | 0.000000e+00 | 922.0 |
19 | TraesCS2A01G188500 | chrUn | 79.481 | 848 | 96 | 40 | 1934 | 2735 | 13024675 | 13025490 | 5.590000e-147 | 531.0 |
20 | TraesCS2A01G188500 | chr5B | 92.727 | 55 | 2 | 2 | 2755 | 2807 | 466005016 | 466004962 | 8.760000e-11 | 78.7 |
21 | TraesCS2A01G188500 | chr7A | 91.667 | 48 | 2 | 1 | 2762 | 2807 | 736674951 | 736674904 | 6.820000e-07 | 65.8 |
22 | TraesCS2A01G188500 | chr4D | 92.683 | 41 | 1 | 2 | 2764 | 2802 | 335775706 | 335775666 | 1.140000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G188500 | chr2A | 153451292 | 153454239 | 2947 | False | 2277.500000 | 3642 | 100.000000 | 1 | 2948 | 2 | chr2A.!!$F1 | 2947 |
1 | TraesCS2A01G188500 | chr2B | 208210384 | 208212631 | 2247 | True | 690.850000 | 2176 | 91.326750 | 19 | 2480 | 4 | chr2B.!!$R1 | 2461 |
2 | TraesCS2A01G188500 | chr2B | 573974524 | 573976273 | 1749 | False | 458.666667 | 1042 | 83.056333 | 249 | 2158 | 3 | chr2B.!!$F2 | 1909 |
3 | TraesCS2A01G188500 | chr2B | 573985068 | 573986112 | 1044 | False | 390.500000 | 588 | 86.077500 | 1426 | 2158 | 2 | chr2B.!!$F3 | 732 |
4 | TraesCS2A01G188500 | chr2D | 148855256 | 148856892 | 1636 | True | 830.333333 | 1884 | 92.884000 | 1 | 2153 | 3 | chr2D.!!$R2 | 2152 |
5 | TraesCS2A01G188500 | chr2D | 490117855 | 490119656 | 1801 | False | 698.000000 | 797 | 83.726500 | 1147 | 2735 | 2 | chr2D.!!$F1 | 1588 |
6 | TraesCS2A01G188500 | chrUn | 13023467 | 13025490 | 2023 | False | 726.500000 | 922 | 82.590000 | 977 | 2735 | 2 | chrUn.!!$F1 | 1758 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
93 | 98 | 0.669318 | GATCGTCAGCAAACACCCGA | 60.669 | 55.000 | 0.0 | 0.0 | 0.00 | 5.14 | F |
237 | 567 | 1.002087 | AGTGGTAGTACTTGGCTGCAC | 59.998 | 52.381 | 0.0 | 0.0 | 0.00 | 4.57 | F |
1640 | 1998 | 0.234106 | CTTGCACAAGCTGACTGACG | 59.766 | 55.000 | 0.0 | 0.0 | 42.74 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1640 | 1998 | 0.101759 | CAGCAACTGGCCATATGTGC | 59.898 | 55.0 | 5.51 | 13.81 | 46.50 | 4.57 | R |
1654 | 2012 | 0.612229 | CTCTCCTTCAGCCTCAGCAA | 59.388 | 55.0 | 0.00 | 0.00 | 43.56 | 3.91 | R |
2835 | 3597 | 0.250234 | TGCCACATGCCTGAGAGTAC | 59.750 | 55.0 | 0.00 | 0.00 | 40.16 | 2.73 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 7.573843 | CGGAAGAAATGCAGAACTCAGTAAATT | 60.574 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
93 | 98 | 0.669318 | GATCGTCAGCAAACACCCGA | 60.669 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
140 | 470 | 1.663074 | GAGAGCAGATAAGGGCGCG | 60.663 | 63.158 | 0.00 | 0.00 | 34.87 | 6.86 |
174 | 504 | 4.342862 | AGTGAGTGAGTGCAACAGTATT | 57.657 | 40.909 | 0.00 | 0.00 | 41.43 | 1.89 |
175 | 505 | 5.468540 | AGTGAGTGAGTGCAACAGTATTA | 57.531 | 39.130 | 0.00 | 0.00 | 41.43 | 0.98 |
176 | 506 | 5.853936 | AGTGAGTGAGTGCAACAGTATTAA | 58.146 | 37.500 | 0.00 | 0.00 | 41.43 | 1.40 |
177 | 507 | 5.928839 | AGTGAGTGAGTGCAACAGTATTAAG | 59.071 | 40.000 | 0.00 | 0.00 | 41.43 | 1.85 |
178 | 508 | 5.696724 | GTGAGTGAGTGCAACAGTATTAAGT | 59.303 | 40.000 | 0.00 | 0.00 | 41.43 | 2.24 |
179 | 509 | 6.866770 | GTGAGTGAGTGCAACAGTATTAAGTA | 59.133 | 38.462 | 0.00 | 0.00 | 41.43 | 2.24 |
180 | 510 | 6.866770 | TGAGTGAGTGCAACAGTATTAAGTAC | 59.133 | 38.462 | 0.00 | 0.00 | 41.43 | 2.73 |
181 | 511 | 5.862323 | AGTGAGTGCAACAGTATTAAGTACG | 59.138 | 40.000 | 0.00 | 0.00 | 41.43 | 3.67 |
182 | 512 | 5.632347 | GTGAGTGCAACAGTATTAAGTACGT | 59.368 | 40.000 | 0.00 | 0.00 | 41.43 | 3.57 |
183 | 513 | 6.803320 | GTGAGTGCAACAGTATTAAGTACGTA | 59.197 | 38.462 | 0.00 | 0.00 | 41.43 | 3.57 |
184 | 514 | 7.008086 | GTGAGTGCAACAGTATTAAGTACGTAG | 59.992 | 40.741 | 0.00 | 0.00 | 41.43 | 3.51 |
185 | 515 | 6.917533 | AGTGCAACAGTATTAAGTACGTAGT | 58.082 | 36.000 | 0.00 | 0.00 | 43.47 | 2.73 |
186 | 516 | 8.044060 | AGTGCAACAGTATTAAGTACGTAGTA | 57.956 | 34.615 | 2.72 | 0.00 | 41.03 | 1.82 |
187 | 517 | 8.180267 | AGTGCAACAGTATTAAGTACGTAGTAG | 58.820 | 37.037 | 2.72 | 0.00 | 42.39 | 2.57 |
188 | 518 | 7.430502 | GTGCAACAGTATTAAGTACGTAGTAGG | 59.569 | 40.741 | 2.72 | 0.00 | 39.99 | 3.18 |
237 | 567 | 1.002087 | AGTGGTAGTACTTGGCTGCAC | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
257 | 587 | 1.308998 | CATACGTTTGCATCTCCCCC | 58.691 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
359 | 693 | 7.926555 | CCTTTGCCACCTATATATATTACTCCG | 59.073 | 40.741 | 0.00 | 0.00 | 0.00 | 4.63 |
395 | 737 | 1.672356 | CACGCACTCCCCTTCCTTG | 60.672 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
1116 | 1465 | 3.028130 | CATGCGATGATGCGGCTT | 58.972 | 55.556 | 0.00 | 0.00 | 37.81 | 4.35 |
1540 | 1894 | 1.784358 | CCATCCTCCACAAATGCCAT | 58.216 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1573 | 1929 | 1.298157 | TATGCTTGCTCGCACACACC | 61.298 | 55.000 | 2.66 | 0.00 | 43.61 | 4.16 |
1640 | 1998 | 0.234106 | CTTGCACAAGCTGACTGACG | 59.766 | 55.000 | 0.00 | 0.00 | 42.74 | 4.35 |
1654 | 2012 | 0.462581 | CTGACGCACATATGGCCAGT | 60.463 | 55.000 | 13.05 | 0.23 | 0.00 | 4.00 |
1866 | 2233 | 4.227134 | CTGGGGCCGGACGATGAG | 62.227 | 72.222 | 5.05 | 0.00 | 0.00 | 2.90 |
1932 | 2327 | 0.606604 | TGGTCGAGTGGTTTAGCCTC | 59.393 | 55.000 | 0.00 | 0.00 | 38.35 | 4.70 |
1974 | 2674 | 0.537188 | ACGAGCTGGGTATCAACTGG | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2035 | 2744 | 1.799933 | AAGCTGGGGTGATCTCTAGG | 58.200 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2105 | 2820 | 4.461431 | TGCAAGCTAGCAAGTGTAGTACTA | 59.539 | 41.667 | 18.83 | 0.00 | 42.46 | 1.82 |
2106 | 2821 | 4.799428 | GCAAGCTAGCAAGTGTAGTACTAC | 59.201 | 45.833 | 23.58 | 23.58 | 39.18 | 2.73 |
2107 | 2822 | 5.393243 | GCAAGCTAGCAAGTGTAGTACTACT | 60.393 | 44.000 | 28.56 | 12.87 | 39.18 | 2.57 |
2141 | 2860 | 3.999001 | TGAAGTTCAGAGATGATGTGTGC | 59.001 | 43.478 | 0.08 | 0.00 | 0.00 | 4.57 |
2187 | 2906 | 6.256757 | ACTTCAGCAATAAATAGTCTTCTCGC | 59.743 | 38.462 | 0.00 | 0.00 | 0.00 | 5.03 |
2189 | 2908 | 4.051922 | AGCAATAAATAGTCTTCTCGCGG | 58.948 | 43.478 | 6.13 | 0.00 | 0.00 | 6.46 |
2190 | 2909 | 3.184581 | GCAATAAATAGTCTTCTCGCGGG | 59.815 | 47.826 | 6.13 | 1.01 | 0.00 | 6.13 |
2193 | 2912 | 1.033574 | AATAGTCTTCTCGCGGGGAG | 58.966 | 55.000 | 8.41 | 8.41 | 44.58 | 4.30 |
2228 | 2947 | 5.355071 | TGTGCTAGTTGGCAATCATCTTAAG | 59.645 | 40.000 | 1.92 | 0.00 | 44.18 | 1.85 |
2232 | 2951 | 6.203723 | GCTAGTTGGCAATCATCTTAAGTAGG | 59.796 | 42.308 | 1.92 | 0.00 | 0.00 | 3.18 |
2236 | 2955 | 6.313519 | TGGCAATCATCTTAAGTAGGAGTT | 57.686 | 37.500 | 1.63 | 0.00 | 0.00 | 3.01 |
2237 | 2956 | 6.721318 | TGGCAATCATCTTAAGTAGGAGTTT | 58.279 | 36.000 | 1.63 | 0.00 | 0.00 | 2.66 |
2238 | 2957 | 6.599244 | TGGCAATCATCTTAAGTAGGAGTTTG | 59.401 | 38.462 | 1.63 | 3.44 | 0.00 | 2.93 |
2239 | 2958 | 6.458888 | GGCAATCATCTTAAGTAGGAGTTTGC | 60.459 | 42.308 | 15.58 | 15.58 | 35.44 | 3.68 |
2240 | 2959 | 6.317391 | GCAATCATCTTAAGTAGGAGTTTGCT | 59.683 | 38.462 | 16.09 | 0.00 | 34.53 | 3.91 |
2241 | 2960 | 7.678218 | GCAATCATCTTAAGTAGGAGTTTGCTG | 60.678 | 40.741 | 16.09 | 0.00 | 34.53 | 4.41 |
2242 | 2961 | 5.178797 | TCATCTTAAGTAGGAGTTTGCTGC | 58.821 | 41.667 | 1.63 | 0.00 | 0.00 | 5.25 |
2243 | 2962 | 4.891992 | TCTTAAGTAGGAGTTTGCTGCT | 57.108 | 40.909 | 1.63 | 0.00 | 45.56 | 4.24 |
2244 | 2963 | 4.569943 | TCTTAAGTAGGAGTTTGCTGCTG | 58.430 | 43.478 | 1.63 | 0.00 | 43.45 | 4.41 |
2245 | 2964 | 2.938956 | AAGTAGGAGTTTGCTGCTGT | 57.061 | 45.000 | 0.00 | 0.00 | 43.45 | 4.40 |
2246 | 2965 | 2.938956 | AGTAGGAGTTTGCTGCTGTT | 57.061 | 45.000 | 0.00 | 0.00 | 43.45 | 3.16 |
2267 | 3000 | 8.997323 | GCTGTTAGCTCTAAATATTGATGATGT | 58.003 | 33.333 | 0.00 | 0.00 | 38.45 | 3.06 |
2286 | 3019 | 1.001378 | GTTGATGTTGGTGGTGACTGC | 60.001 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2288 | 3021 | 0.877071 | GATGTTGGTGGTGACTGCTG | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2396 | 3129 | 6.633500 | TTTCGAAAGGATGACACTTTTCAT | 57.367 | 33.333 | 6.47 | 0.00 | 38.21 | 2.57 |
2414 | 3160 | 1.903877 | ATGGCCACTGCGCTCTTACT | 61.904 | 55.000 | 8.16 | 0.00 | 38.85 | 2.24 |
2415 | 3161 | 1.254975 | TGGCCACTGCGCTCTTACTA | 61.255 | 55.000 | 9.73 | 0.00 | 38.85 | 1.82 |
2416 | 3162 | 0.806492 | GGCCACTGCGCTCTTACTAC | 60.806 | 60.000 | 9.73 | 0.00 | 38.85 | 2.73 |
2420 | 3166 | 2.412089 | CCACTGCGCTCTTACTACAAAC | 59.588 | 50.000 | 9.73 | 0.00 | 0.00 | 2.93 |
2443 | 3193 | 2.122783 | TGTATGTTAGCCCTTGTGCC | 57.877 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2499 | 3249 | 9.455847 | GTTTATATCAGTTCATTTCTTCATGGC | 57.544 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
2500 | 3250 | 8.985315 | TTATATCAGTTCATTTCTTCATGGCT | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
2502 | 3252 | 6.690194 | ATCAGTTCATTTCTTCATGGCTAC | 57.310 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
2503 | 3253 | 5.559770 | TCAGTTCATTTCTTCATGGCTACA | 58.440 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2504 | 3254 | 6.182627 | TCAGTTCATTTCTTCATGGCTACAT | 58.817 | 36.000 | 0.00 | 0.00 | 37.99 | 2.29 |
2509 | 3263 | 5.474532 | TCATTTCTTCATGGCTACATATGGC | 59.525 | 40.000 | 7.80 | 1.33 | 34.99 | 4.40 |
2522 | 3276 | 1.538512 | CATATGGCCATTTCGCTCCTG | 59.461 | 52.381 | 26.37 | 5.34 | 0.00 | 3.86 |
2528 | 3282 | 1.676014 | GCCATTTCGCTCCTGTGTACT | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
2531 | 3285 | 4.442706 | CCATTTCGCTCCTGTGTACTTAT | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2532 | 3286 | 5.597806 | CCATTTCGCTCCTGTGTACTTATA | 58.402 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
2562 | 3316 | 4.724399 | TGCTCCAACTTCATCTTTGGTAA | 58.276 | 39.130 | 0.50 | 0.00 | 42.62 | 2.85 |
2568 | 3322 | 8.934023 | TCCAACTTCATCTTTGGTAAAGTTAT | 57.066 | 30.769 | 0.50 | 0.00 | 42.62 | 1.89 |
2570 | 3324 | 8.792633 | CCAACTTCATCTTTGGTAAAGTTATGA | 58.207 | 33.333 | 0.00 | 2.50 | 37.91 | 2.15 |
2575 | 3329 | 8.561738 | TCATCTTTGGTAAAGTTATGAAGTCC | 57.438 | 34.615 | 1.70 | 0.00 | 39.52 | 3.85 |
2576 | 3330 | 7.333423 | TCATCTTTGGTAAAGTTATGAAGTCCG | 59.667 | 37.037 | 1.70 | 0.00 | 39.52 | 4.79 |
2577 | 3331 | 6.761312 | TCTTTGGTAAAGTTATGAAGTCCGA | 58.239 | 36.000 | 1.70 | 0.00 | 39.52 | 4.55 |
2578 | 3332 | 7.218614 | TCTTTGGTAAAGTTATGAAGTCCGAA | 58.781 | 34.615 | 1.70 | 0.00 | 39.52 | 4.30 |
2579 | 3333 | 6.790285 | TTGGTAAAGTTATGAAGTCCGAAC | 57.210 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
2582 | 3336 | 7.092716 | TGGTAAAGTTATGAAGTCCGAACTAC | 58.907 | 38.462 | 0.00 | 0.00 | 33.48 | 2.73 |
2585 | 3339 | 6.585695 | AAGTTATGAAGTCCGAACTACAGA | 57.414 | 37.500 | 0.00 | 0.00 | 33.48 | 3.41 |
2587 | 3341 | 3.512033 | ATGAAGTCCGAACTACAGAGC | 57.488 | 47.619 | 0.00 | 0.00 | 33.48 | 4.09 |
2595 | 3349 | 2.534298 | CGAACTACAGAGCACATGGAG | 58.466 | 52.381 | 0.00 | 0.00 | 34.56 | 3.86 |
2611 | 3365 | 6.701400 | GCACATGGAGTAACTTCAACAAATTT | 59.299 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2638 | 3396 | 6.176975 | TGTAAGAACTGGTCGCAAAATATG | 57.823 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
2684 | 3446 | 9.810870 | ACTTTAGACCTAGACGGAGAATATTAT | 57.189 | 33.333 | 0.00 | 0.00 | 36.31 | 1.28 |
2688 | 3450 | 6.151985 | AGACCTAGACGGAGAATATTATGCAG | 59.848 | 42.308 | 2.45 | 0.00 | 36.31 | 4.41 |
2708 | 3470 | 4.260948 | GCAGCAGCTGTCATAAAATACTCC | 60.261 | 45.833 | 23.60 | 0.00 | 37.91 | 3.85 |
2716 | 3478 | 7.345914 | AGCTGTCATAAAATACTCCTCTAACCT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 3.50 |
2771 | 3533 | 9.608718 | AATAGCTCTCATATATAATACTCCCCC | 57.391 | 37.037 | 0.00 | 0.00 | 0.00 | 5.40 |
2772 | 3534 | 6.998112 | AGCTCTCATATATAATACTCCCCCA | 58.002 | 40.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2773 | 3535 | 7.609375 | AGCTCTCATATATAATACTCCCCCAT | 58.391 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2774 | 3536 | 7.732593 | AGCTCTCATATATAATACTCCCCCATC | 59.267 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
2775 | 3537 | 7.038658 | GCTCTCATATATAATACTCCCCCATCC | 60.039 | 44.444 | 0.00 | 0.00 | 0.00 | 3.51 |
2776 | 3538 | 7.904322 | TCTCATATATAATACTCCCCCATCCA | 58.096 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2777 | 3539 | 8.359118 | TCTCATATATAATACTCCCCCATCCAA | 58.641 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
2778 | 3540 | 8.941639 | TCATATATAATACTCCCCCATCCAAA | 57.058 | 34.615 | 0.00 | 0.00 | 0.00 | 3.28 |
2779 | 3541 | 9.357921 | TCATATATAATACTCCCCCATCCAAAA | 57.642 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2784 | 3546 | 6.355588 | AATACTCCCCCATCCAAAATAAGT | 57.644 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2785 | 3547 | 7.474474 | AATACTCCCCCATCCAAAATAAGTA | 57.526 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2786 | 3548 | 7.663501 | ATACTCCCCCATCCAAAATAAGTAT | 57.336 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2787 | 3549 | 5.953571 | ACTCCCCCATCCAAAATAAGTATC | 58.046 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2788 | 3550 | 5.435041 | ACTCCCCCATCCAAAATAAGTATCA | 59.565 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2789 | 3551 | 6.104691 | ACTCCCCCATCCAAAATAAGTATCAT | 59.895 | 38.462 | 0.00 | 0.00 | 0.00 | 2.45 |
2790 | 3552 | 6.314120 | TCCCCCATCCAAAATAAGTATCATG | 58.686 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2791 | 3553 | 5.481473 | CCCCCATCCAAAATAAGTATCATGG | 59.519 | 44.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2792 | 3554 | 6.077322 | CCCCATCCAAAATAAGTATCATGGT | 58.923 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2793 | 3555 | 6.554605 | CCCCATCCAAAATAAGTATCATGGTT | 59.445 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
2794 | 3556 | 7.071071 | CCCCATCCAAAATAAGTATCATGGTTT | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
2795 | 3557 | 8.485392 | CCCATCCAAAATAAGTATCATGGTTTT | 58.515 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2812 | 3574 | 9.487790 | TCATGGTTTTAGTTCAAATTTTGGATC | 57.512 | 29.630 | 9.18 | 1.28 | 0.00 | 3.36 |
2813 | 3575 | 9.270640 | CATGGTTTTAGTTCAAATTTTGGATCA | 57.729 | 29.630 | 9.18 | 0.00 | 0.00 | 2.92 |
2814 | 3576 | 8.885494 | TGGTTTTAGTTCAAATTTTGGATCAG | 57.115 | 30.769 | 9.18 | 0.00 | 0.00 | 2.90 |
2815 | 3577 | 8.700051 | TGGTTTTAGTTCAAATTTTGGATCAGA | 58.300 | 29.630 | 9.18 | 0.00 | 0.00 | 3.27 |
2816 | 3578 | 9.196552 | GGTTTTAGTTCAAATTTTGGATCAGAG | 57.803 | 33.333 | 9.18 | 0.00 | 0.00 | 3.35 |
2817 | 3579 | 9.196552 | GTTTTAGTTCAAATTTTGGATCAGAGG | 57.803 | 33.333 | 9.18 | 0.00 | 0.00 | 3.69 |
2818 | 3580 | 5.990120 | AGTTCAAATTTTGGATCAGAGGG | 57.010 | 39.130 | 9.18 | 0.00 | 0.00 | 4.30 |
2819 | 3581 | 5.644188 | AGTTCAAATTTTGGATCAGAGGGA | 58.356 | 37.500 | 9.18 | 0.00 | 0.00 | 4.20 |
2820 | 3582 | 5.713861 | AGTTCAAATTTTGGATCAGAGGGAG | 59.286 | 40.000 | 9.18 | 0.00 | 0.00 | 4.30 |
2821 | 3583 | 5.261040 | TCAAATTTTGGATCAGAGGGAGT | 57.739 | 39.130 | 9.18 | 0.00 | 0.00 | 3.85 |
2822 | 3584 | 6.387192 | TCAAATTTTGGATCAGAGGGAGTA | 57.613 | 37.500 | 9.18 | 0.00 | 0.00 | 2.59 |
2823 | 3585 | 6.180472 | TCAAATTTTGGATCAGAGGGAGTAC | 58.820 | 40.000 | 9.18 | 0.00 | 0.00 | 2.73 |
2824 | 3586 | 5.779241 | AATTTTGGATCAGAGGGAGTACA | 57.221 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
2825 | 3587 | 5.779241 | ATTTTGGATCAGAGGGAGTACAA | 57.221 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
2826 | 3588 | 4.826274 | TTTGGATCAGAGGGAGTACAAG | 57.174 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2827 | 3589 | 3.757947 | TGGATCAGAGGGAGTACAAGA | 57.242 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
2828 | 3590 | 4.061131 | TGGATCAGAGGGAGTACAAGAA | 57.939 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2829 | 3591 | 4.624913 | TGGATCAGAGGGAGTACAAGAAT | 58.375 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2830 | 3592 | 5.777449 | TGGATCAGAGGGAGTACAAGAATA | 58.223 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
2831 | 3593 | 5.835819 | TGGATCAGAGGGAGTACAAGAATAG | 59.164 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2832 | 3594 | 6.071984 | GGATCAGAGGGAGTACAAGAATAGA | 58.928 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2833 | 3595 | 6.551601 | GGATCAGAGGGAGTACAAGAATAGAA | 59.448 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
2834 | 3596 | 6.777213 | TCAGAGGGAGTACAAGAATAGAAC | 57.223 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2835 | 3597 | 5.357314 | TCAGAGGGAGTACAAGAATAGAACG | 59.643 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2836 | 3598 | 5.125739 | CAGAGGGAGTACAAGAATAGAACGT | 59.874 | 44.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2837 | 3599 | 6.318144 | CAGAGGGAGTACAAGAATAGAACGTA | 59.682 | 42.308 | 0.00 | 0.00 | 0.00 | 3.57 |
2838 | 3600 | 6.318396 | AGAGGGAGTACAAGAATAGAACGTAC | 59.682 | 42.308 | 0.00 | 0.00 | 34.09 | 3.67 |
2839 | 3601 | 6.186234 | AGGGAGTACAAGAATAGAACGTACT | 58.814 | 40.000 | 0.00 | 0.00 | 44.03 | 2.73 |
2843 | 3605 | 7.918536 | AGTACAAGAATAGAACGTACTCTCA | 57.081 | 36.000 | 0.00 | 0.00 | 38.67 | 3.27 |
2844 | 3606 | 7.976826 | AGTACAAGAATAGAACGTACTCTCAG | 58.023 | 38.462 | 0.00 | 0.00 | 38.67 | 3.35 |
2845 | 3607 | 6.197364 | ACAAGAATAGAACGTACTCTCAGG | 57.803 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2846 | 3608 | 4.904253 | AGAATAGAACGTACTCTCAGGC | 57.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2847 | 3609 | 4.270834 | AGAATAGAACGTACTCTCAGGCA | 58.729 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
2848 | 3610 | 4.890581 | AGAATAGAACGTACTCTCAGGCAT | 59.109 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2849 | 3611 | 2.949451 | AGAACGTACTCTCAGGCATG | 57.051 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2850 | 3612 | 2.171840 | AGAACGTACTCTCAGGCATGT | 58.828 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
2851 | 3613 | 2.094494 | AGAACGTACTCTCAGGCATGTG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2852 | 3614 | 0.532573 | ACGTACTCTCAGGCATGTGG | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2853 | 3615 | 0.807667 | CGTACTCTCAGGCATGTGGC | 60.808 | 60.000 | 0.00 | 0.00 | 43.74 | 5.01 |
2865 | 3627 | 3.591196 | GCATGTGGCACCAAAATAGAA | 57.409 | 42.857 | 16.26 | 0.00 | 43.97 | 2.10 |
2866 | 3628 | 4.127566 | GCATGTGGCACCAAAATAGAAT | 57.872 | 40.909 | 16.26 | 0.00 | 43.97 | 2.40 |
2867 | 3629 | 3.866910 | GCATGTGGCACCAAAATAGAATG | 59.133 | 43.478 | 16.26 | 9.58 | 43.97 | 2.67 |
2868 | 3630 | 4.621274 | GCATGTGGCACCAAAATAGAATGT | 60.621 | 41.667 | 16.26 | 0.00 | 43.97 | 2.71 |
2869 | 3631 | 5.394005 | GCATGTGGCACCAAAATAGAATGTA | 60.394 | 40.000 | 16.26 | 0.00 | 43.97 | 2.29 |
2870 | 3632 | 6.629128 | CATGTGGCACCAAAATAGAATGTAA | 58.371 | 36.000 | 16.26 | 0.00 | 0.00 | 2.41 |
2871 | 3633 | 6.849085 | TGTGGCACCAAAATAGAATGTAAT | 57.151 | 33.333 | 16.26 | 0.00 | 0.00 | 1.89 |
2872 | 3634 | 7.238486 | TGTGGCACCAAAATAGAATGTAATT | 57.762 | 32.000 | 16.26 | 0.00 | 40.93 | 1.40 |
2873 | 3635 | 8.354711 | TGTGGCACCAAAATAGAATGTAATTA | 57.645 | 30.769 | 16.26 | 0.00 | 36.07 | 1.40 |
2874 | 3636 | 8.807118 | TGTGGCACCAAAATAGAATGTAATTAA | 58.193 | 29.630 | 16.26 | 0.00 | 36.07 | 1.40 |
2875 | 3637 | 9.301153 | GTGGCACCAAAATAGAATGTAATTAAG | 57.699 | 33.333 | 6.29 | 0.00 | 36.07 | 1.85 |
2876 | 3638 | 9.030452 | TGGCACCAAAATAGAATGTAATTAAGT | 57.970 | 29.630 | 0.00 | 0.00 | 36.07 | 2.24 |
2877 | 3639 | 9.869757 | GGCACCAAAATAGAATGTAATTAAGTT | 57.130 | 29.630 | 0.00 | 0.00 | 36.07 | 2.66 |
2886 | 3648 | 9.956720 | ATAGAATGTAATTAAGTTGCATCTTGC | 57.043 | 29.630 | 18.31 | 5.86 | 41.50 | 4.01 |
2887 | 3649 | 8.059798 | AGAATGTAATTAAGTTGCATCTTGCT | 57.940 | 30.769 | 18.31 | 6.66 | 41.50 | 3.91 |
2888 | 3650 | 7.972277 | AGAATGTAATTAAGTTGCATCTTGCTG | 59.028 | 33.333 | 18.31 | 0.00 | 41.50 | 4.41 |
2889 | 3651 | 6.816134 | TGTAATTAAGTTGCATCTTGCTGA | 57.184 | 33.333 | 18.31 | 4.32 | 45.31 | 4.26 |
2890 | 3652 | 7.213216 | TGTAATTAAGTTGCATCTTGCTGAA | 57.787 | 32.000 | 18.31 | 6.60 | 45.31 | 3.02 |
2891 | 3653 | 7.829725 | TGTAATTAAGTTGCATCTTGCTGAAT | 58.170 | 30.769 | 18.31 | 8.42 | 45.31 | 2.57 |
2892 | 3654 | 8.306038 | TGTAATTAAGTTGCATCTTGCTGAATT | 58.694 | 29.630 | 18.31 | 16.54 | 45.31 | 2.17 |
2893 | 3655 | 9.143631 | GTAATTAAGTTGCATCTTGCTGAATTT | 57.856 | 29.630 | 18.31 | 5.36 | 45.31 | 1.82 |
2894 | 3656 | 7.591006 | ATTAAGTTGCATCTTGCTGAATTTG | 57.409 | 32.000 | 18.31 | 0.00 | 45.31 | 2.32 |
2895 | 3657 | 4.859304 | AGTTGCATCTTGCTGAATTTGA | 57.141 | 36.364 | 0.75 | 0.00 | 45.31 | 2.69 |
2896 | 3658 | 5.204409 | AGTTGCATCTTGCTGAATTTGAA | 57.796 | 34.783 | 0.75 | 0.00 | 45.31 | 2.69 |
2897 | 3659 | 5.603596 | AGTTGCATCTTGCTGAATTTGAAA | 58.396 | 33.333 | 0.75 | 0.00 | 45.31 | 2.69 |
2898 | 3660 | 6.050432 | AGTTGCATCTTGCTGAATTTGAAAA | 58.950 | 32.000 | 0.75 | 0.00 | 45.31 | 2.29 |
2899 | 3661 | 6.708949 | AGTTGCATCTTGCTGAATTTGAAAAT | 59.291 | 30.769 | 0.75 | 0.00 | 45.31 | 1.82 |
2900 | 3662 | 7.227910 | AGTTGCATCTTGCTGAATTTGAAAATT | 59.772 | 29.630 | 0.68 | 0.68 | 45.31 | 1.82 |
2901 | 3663 | 7.499321 | TGCATCTTGCTGAATTTGAAAATTT | 57.501 | 28.000 | 2.71 | 0.00 | 45.31 | 1.82 |
2902 | 3664 | 7.932335 | TGCATCTTGCTGAATTTGAAAATTTT | 58.068 | 26.923 | 2.28 | 2.28 | 45.31 | 1.82 |
2903 | 3665 | 7.858382 | TGCATCTTGCTGAATTTGAAAATTTTG | 59.142 | 29.630 | 8.47 | 0.00 | 45.31 | 2.44 |
2904 | 3666 | 7.858879 | GCATCTTGCTGAATTTGAAAATTTTGT | 59.141 | 29.630 | 8.47 | 0.00 | 40.96 | 2.83 |
2905 | 3667 | 9.165014 | CATCTTGCTGAATTTGAAAATTTTGTG | 57.835 | 29.630 | 8.47 | 0.00 | 38.64 | 3.33 |
2906 | 3668 | 7.188157 | TCTTGCTGAATTTGAAAATTTTGTGC | 58.812 | 30.769 | 8.47 | 0.00 | 38.64 | 4.57 |
2907 | 3669 | 6.432607 | TGCTGAATTTGAAAATTTTGTGCA | 57.567 | 29.167 | 8.47 | 0.00 | 38.64 | 4.57 |
2908 | 3670 | 7.028926 | TGCTGAATTTGAAAATTTTGTGCAT | 57.971 | 28.000 | 8.47 | 0.00 | 38.64 | 3.96 |
2909 | 3671 | 7.133513 | TGCTGAATTTGAAAATTTTGTGCATC | 58.866 | 30.769 | 8.47 | 2.38 | 38.64 | 3.91 |
2910 | 3672 | 7.133513 | GCTGAATTTGAAAATTTTGTGCATCA | 58.866 | 30.769 | 8.47 | 6.64 | 38.64 | 3.07 |
2911 | 3673 | 7.644551 | GCTGAATTTGAAAATTTTGTGCATCAA | 59.355 | 29.630 | 8.47 | 2.39 | 38.64 | 2.57 |
2912 | 3674 | 9.504710 | CTGAATTTGAAAATTTTGTGCATCAAA | 57.495 | 25.926 | 8.47 | 11.42 | 43.24 | 2.69 |
2938 | 3700 | 9.639601 | ATTCTTAGTAATAAATGATGCGATCGA | 57.360 | 29.630 | 21.57 | 4.34 | 0.00 | 3.59 |
2939 | 3701 | 9.471084 | TTCTTAGTAATAAATGATGCGATCGAA | 57.529 | 29.630 | 21.57 | 9.49 | 0.00 | 3.71 |
2940 | 3702 | 9.639601 | TCTTAGTAATAAATGATGCGATCGAAT | 57.360 | 29.630 | 21.57 | 15.43 | 0.00 | 3.34 |
2944 | 3706 | 8.773645 | AGTAATAAATGATGCGATCGAATTTCA | 58.226 | 29.630 | 21.57 | 10.87 | 0.00 | 2.69 |
2945 | 3707 | 9.381027 | GTAATAAATGATGCGATCGAATTTCAA | 57.619 | 29.630 | 21.57 | 1.61 | 0.00 | 2.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
75 | 80 | 0.250124 | TTCGGGTGTTTGCTGACGAT | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
101 | 106 | 1.789464 | GTTGCTGACGAACTCTCTGTG | 59.211 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
102 | 107 | 2.141535 | GTTGCTGACGAACTCTCTGT | 57.858 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
140 | 470 | 3.708220 | CTCACTTCCTCGCTCGCCC | 62.708 | 68.421 | 0.00 | 0.00 | 0.00 | 6.13 |
206 | 536 | 7.147976 | CCAAGTACTACCACTACGTACTTTTT | 58.852 | 38.462 | 10.36 | 0.00 | 46.54 | 1.94 |
207 | 537 | 6.681777 | CCAAGTACTACCACTACGTACTTTT | 58.318 | 40.000 | 10.36 | 0.00 | 46.54 | 2.27 |
208 | 538 | 5.335976 | GCCAAGTACTACCACTACGTACTTT | 60.336 | 44.000 | 10.36 | 0.00 | 46.54 | 2.66 |
210 | 540 | 3.691609 | GCCAAGTACTACCACTACGTACT | 59.308 | 47.826 | 0.00 | 0.00 | 44.00 | 2.73 |
211 | 541 | 3.691609 | AGCCAAGTACTACCACTACGTAC | 59.308 | 47.826 | 0.00 | 0.00 | 35.05 | 3.67 |
212 | 542 | 3.691118 | CAGCCAAGTACTACCACTACGTA | 59.309 | 47.826 | 0.00 | 0.00 | 0.00 | 3.57 |
213 | 543 | 2.490903 | CAGCCAAGTACTACCACTACGT | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 3.57 |
214 | 544 | 2.734492 | GCAGCCAAGTACTACCACTACG | 60.734 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
215 | 545 | 2.232941 | TGCAGCCAAGTACTACCACTAC | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
216 | 546 | 2.232941 | GTGCAGCCAAGTACTACCACTA | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
217 | 547 | 1.002087 | GTGCAGCCAAGTACTACCACT | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
218 | 548 | 1.439679 | GTGCAGCCAAGTACTACCAC | 58.560 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
219 | 549 | 0.323629 | GGTGCAGCCAAGTACTACCA | 59.676 | 55.000 | 4.03 | 0.00 | 37.17 | 3.25 |
220 | 550 | 0.323629 | TGGTGCAGCCAAGTACTACC | 59.676 | 55.000 | 14.36 | 0.00 | 45.94 | 3.18 |
237 | 567 | 1.308998 | GGGGAGATGCAAACGTATGG | 58.691 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
395 | 737 | 4.800471 | GCAAGGCACTATTTGATGTTAAGC | 59.200 | 41.667 | 0.00 | 0.00 | 38.49 | 3.09 |
1086 | 1435 | 0.385849 | TCGCATGCGCAAAGAAACAG | 60.386 | 50.000 | 34.45 | 4.77 | 38.40 | 3.16 |
1176 | 1528 | 0.531090 | TGCACCTACACACACGGAAC | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1285 | 1639 | 1.460305 | ATCCCCTCCTCCGTCCATG | 60.460 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
1387 | 1741 | 1.021390 | CGGCAGCGAGATGAACCTTT | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1573 | 1929 | 1.881973 | GCCATATGTATGCCAGTGTGG | 59.118 | 52.381 | 1.24 | 0.00 | 41.55 | 4.17 |
1640 | 1998 | 0.101759 | CAGCAACTGGCCATATGTGC | 59.898 | 55.000 | 5.51 | 13.81 | 46.50 | 4.57 |
1654 | 2012 | 0.612229 | CTCTCCTTCAGCCTCAGCAA | 59.388 | 55.000 | 0.00 | 0.00 | 43.56 | 3.91 |
1866 | 2233 | 2.182842 | GGGGACGCACATCATCAGC | 61.183 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
1932 | 2327 | 7.012327 | TCGTCTCAATTTCAAATTAGCCCATAG | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
2035 | 2744 | 3.775661 | ACATAATTAAACAGGCACGCC | 57.224 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 |
2105 | 2820 | 3.898123 | TGAACTTCAAGAGAGCTACCAGT | 59.102 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2106 | 2821 | 4.219507 | TCTGAACTTCAAGAGAGCTACCAG | 59.780 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
2107 | 2822 | 4.152647 | TCTGAACTTCAAGAGAGCTACCA | 58.847 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
2171 | 2890 | 3.228453 | TCCCCGCGAGAAGACTATTTAT | 58.772 | 45.455 | 8.23 | 0.00 | 0.00 | 1.40 |
2187 | 2906 | 1.153369 | CATACACAGTGCCTCCCCG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
2189 | 2908 | 3.159298 | CACATACACAGTGCCTCCC | 57.841 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
2228 | 2947 | 2.416893 | GCTAACAGCAGCAAACTCCTAC | 59.583 | 50.000 | 0.00 | 0.00 | 41.89 | 3.18 |
2232 | 2951 | 2.421619 | AGAGCTAACAGCAGCAAACTC | 58.578 | 47.619 | 0.00 | 0.00 | 45.56 | 3.01 |
2236 | 2955 | 6.823182 | TCAATATTTAGAGCTAACAGCAGCAA | 59.177 | 34.615 | 0.00 | 0.00 | 45.56 | 3.91 |
2237 | 2956 | 6.348498 | TCAATATTTAGAGCTAACAGCAGCA | 58.652 | 36.000 | 0.00 | 0.00 | 45.56 | 4.41 |
2238 | 2957 | 6.851222 | TCAATATTTAGAGCTAACAGCAGC | 57.149 | 37.500 | 0.38 | 0.00 | 45.56 | 5.25 |
2239 | 2958 | 8.599055 | TCATCAATATTTAGAGCTAACAGCAG | 57.401 | 34.615 | 0.38 | 0.00 | 45.56 | 4.24 |
2240 | 2959 | 8.996271 | CATCATCAATATTTAGAGCTAACAGCA | 58.004 | 33.333 | 0.38 | 0.00 | 45.56 | 4.41 |
2241 | 2960 | 8.997323 | ACATCATCAATATTTAGAGCTAACAGC | 58.003 | 33.333 | 0.00 | 0.00 | 42.84 | 4.40 |
2267 | 3000 | 1.133823 | AGCAGTCACCACCAACATCAA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2270 | 3003 | 0.473755 | TCAGCAGTCACCACCAACAT | 59.526 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2286 | 3019 | 9.175060 | CAGATCGAAATTGTATACTGTACTCAG | 57.825 | 37.037 | 4.17 | 0.00 | 46.18 | 3.35 |
2288 | 3021 | 9.171701 | GACAGATCGAAATTGTATACTGTACTC | 57.828 | 37.037 | 4.17 | 0.00 | 37.45 | 2.59 |
2373 | 3106 | 6.437928 | CATGAAAAGTGTCATCCTTTCGAAA | 58.562 | 36.000 | 10.71 | 10.71 | 36.04 | 3.46 |
2377 | 3110 | 4.488879 | GCCATGAAAAGTGTCATCCTTTC | 58.511 | 43.478 | 0.00 | 0.00 | 36.04 | 2.62 |
2396 | 3129 | 1.254975 | TAGTAAGAGCGCAGTGGCCA | 61.255 | 55.000 | 11.47 | 0.00 | 36.38 | 5.36 |
2416 | 3162 | 6.420604 | CACAAGGGCTAACATACAAAAGTTTG | 59.579 | 38.462 | 2.22 | 2.22 | 43.62 | 2.93 |
2420 | 3166 | 4.485163 | GCACAAGGGCTAACATACAAAAG | 58.515 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
2498 | 3248 | 2.154462 | AGCGAAATGGCCATATGTAGC | 58.846 | 47.619 | 21.15 | 19.19 | 0.00 | 3.58 |
2499 | 3249 | 2.744202 | GGAGCGAAATGGCCATATGTAG | 59.256 | 50.000 | 21.15 | 10.23 | 0.00 | 2.74 |
2500 | 3250 | 2.371841 | AGGAGCGAAATGGCCATATGTA | 59.628 | 45.455 | 21.15 | 0.00 | 0.00 | 2.29 |
2501 | 3251 | 1.143684 | AGGAGCGAAATGGCCATATGT | 59.856 | 47.619 | 21.15 | 7.51 | 0.00 | 2.29 |
2502 | 3252 | 1.538512 | CAGGAGCGAAATGGCCATATG | 59.461 | 52.381 | 21.15 | 12.93 | 0.00 | 1.78 |
2503 | 3253 | 1.143684 | ACAGGAGCGAAATGGCCATAT | 59.856 | 47.619 | 21.15 | 6.63 | 0.00 | 1.78 |
2504 | 3254 | 0.546122 | ACAGGAGCGAAATGGCCATA | 59.454 | 50.000 | 21.15 | 0.00 | 0.00 | 2.74 |
2509 | 3263 | 2.386661 | AGTACACAGGAGCGAAATGG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2510 | 3264 | 8.988064 | ATATATAAGTACACAGGAGCGAAATG | 57.012 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2532 | 3286 | 9.499479 | CAAAGATGAAGTTGGAGCAGTATATAT | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2550 | 3304 | 7.333423 | CGGACTTCATAACTTTACCAAAGATGA | 59.667 | 37.037 | 5.69 | 3.07 | 41.02 | 2.92 |
2551 | 3305 | 7.333423 | TCGGACTTCATAACTTTACCAAAGATG | 59.667 | 37.037 | 5.69 | 0.94 | 41.02 | 2.90 |
2552 | 3306 | 7.391620 | TCGGACTTCATAACTTTACCAAAGAT | 58.608 | 34.615 | 5.69 | 0.00 | 41.02 | 2.40 |
2553 | 3307 | 6.761312 | TCGGACTTCATAACTTTACCAAAGA | 58.239 | 36.000 | 5.69 | 0.00 | 41.02 | 2.52 |
2562 | 3316 | 6.585695 | TCTGTAGTTCGGACTTCATAACTT | 57.414 | 37.500 | 0.00 | 0.00 | 37.33 | 2.66 |
2568 | 3322 | 2.030185 | GTGCTCTGTAGTTCGGACTTCA | 60.030 | 50.000 | 0.00 | 1.39 | 37.33 | 3.02 |
2570 | 3324 | 1.961394 | TGTGCTCTGTAGTTCGGACTT | 59.039 | 47.619 | 0.00 | 0.00 | 37.33 | 3.01 |
2571 | 3325 | 1.617322 | TGTGCTCTGTAGTTCGGACT | 58.383 | 50.000 | 0.00 | 0.00 | 39.97 | 3.85 |
2572 | 3326 | 2.263077 | CATGTGCTCTGTAGTTCGGAC | 58.737 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
2573 | 3327 | 1.204704 | CCATGTGCTCTGTAGTTCGGA | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
2575 | 3329 | 2.094494 | ACTCCATGTGCTCTGTAGTTCG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2576 | 3330 | 3.601443 | ACTCCATGTGCTCTGTAGTTC | 57.399 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
2577 | 3331 | 4.528596 | AGTTACTCCATGTGCTCTGTAGTT | 59.471 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2578 | 3332 | 4.090090 | AGTTACTCCATGTGCTCTGTAGT | 58.910 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2579 | 3333 | 4.727507 | AGTTACTCCATGTGCTCTGTAG | 57.272 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2582 | 3336 | 3.930336 | TGAAGTTACTCCATGTGCTCTG | 58.070 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
2585 | 3339 | 4.085357 | TGTTGAAGTTACTCCATGTGCT | 57.915 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2587 | 3341 | 9.743057 | TTAAATTTGTTGAAGTTACTCCATGTG | 57.257 | 29.630 | 0.00 | 0.00 | 28.43 | 3.21 |
2611 | 3365 | 6.621316 | TTTTGCGACCAGTTCTTACAATTA | 57.379 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2614 | 3368 | 6.205853 | ACATATTTTGCGACCAGTTCTTACAA | 59.794 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
2638 | 3396 | 6.619801 | AAGTCCTAACAATGTGACTTTCAC | 57.380 | 37.500 | 10.58 | 0.00 | 43.54 | 3.18 |
2644 | 3402 | 6.465084 | AGGTCTAAAGTCCTAACAATGTGAC | 58.535 | 40.000 | 0.00 | 0.00 | 31.87 | 3.67 |
2648 | 3406 | 6.973474 | CGTCTAGGTCTAAAGTCCTAACAATG | 59.027 | 42.308 | 4.84 | 0.00 | 35.87 | 2.82 |
2656 | 3414 | 3.883669 | TCTCCGTCTAGGTCTAAAGTCC | 58.116 | 50.000 | 0.00 | 0.00 | 41.99 | 3.85 |
2664 | 3422 | 6.268825 | TGCATAATATTCTCCGTCTAGGTC | 57.731 | 41.667 | 0.00 | 0.00 | 41.99 | 3.85 |
2665 | 3423 | 5.336849 | GCTGCATAATATTCTCCGTCTAGGT | 60.337 | 44.000 | 0.00 | 0.00 | 41.99 | 3.08 |
2684 | 3446 | 4.264253 | AGTATTTTATGACAGCTGCTGCA | 58.736 | 39.130 | 28.39 | 24.93 | 42.74 | 4.41 |
2685 | 3447 | 4.260948 | GGAGTATTTTATGACAGCTGCTGC | 60.261 | 45.833 | 28.39 | 20.56 | 34.37 | 5.25 |
2688 | 3450 | 5.363939 | AGAGGAGTATTTTATGACAGCTGC | 58.636 | 41.667 | 15.27 | 7.45 | 0.00 | 5.25 |
2745 | 3507 | 9.608718 | GGGGGAGTATTATATATGAGAGCTATT | 57.391 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2746 | 3508 | 8.747264 | TGGGGGAGTATTATATATGAGAGCTAT | 58.253 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
2747 | 3509 | 8.126241 | TGGGGGAGTATTATATATGAGAGCTA | 57.874 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
2748 | 3510 | 6.998112 | TGGGGGAGTATTATATATGAGAGCT | 58.002 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2749 | 3511 | 7.038658 | GGATGGGGGAGTATTATATATGAGAGC | 60.039 | 44.444 | 0.00 | 0.00 | 0.00 | 4.09 |
2750 | 3512 | 8.013072 | TGGATGGGGGAGTATTATATATGAGAG | 58.987 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
2751 | 3513 | 7.904322 | TGGATGGGGGAGTATTATATATGAGA | 58.096 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
2752 | 3514 | 8.567198 | TTGGATGGGGGAGTATTATATATGAG | 57.433 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2753 | 3515 | 8.941639 | TTTGGATGGGGGAGTATTATATATGA | 57.058 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
2758 | 3520 | 9.189750 | ACTTATTTTGGATGGGGGAGTATTATA | 57.810 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
2759 | 3521 | 8.068891 | ACTTATTTTGGATGGGGGAGTATTAT | 57.931 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
2760 | 3522 | 7.474474 | ACTTATTTTGGATGGGGGAGTATTA | 57.526 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2761 | 3523 | 6.355588 | ACTTATTTTGGATGGGGGAGTATT | 57.644 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2762 | 3524 | 7.297108 | TGATACTTATTTTGGATGGGGGAGTAT | 59.703 | 37.037 | 0.00 | 0.00 | 32.29 | 2.12 |
2763 | 3525 | 6.621931 | TGATACTTATTTTGGATGGGGGAGTA | 59.378 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2764 | 3526 | 5.435041 | TGATACTTATTTTGGATGGGGGAGT | 59.565 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2765 | 3527 | 5.952387 | TGATACTTATTTTGGATGGGGGAG | 58.048 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2766 | 3528 | 6.314120 | CATGATACTTATTTTGGATGGGGGA | 58.686 | 40.000 | 0.00 | 0.00 | 0.00 | 4.81 |
2767 | 3529 | 5.481473 | CCATGATACTTATTTTGGATGGGGG | 59.519 | 44.000 | 0.00 | 0.00 | 0.00 | 5.40 |
2768 | 3530 | 6.077322 | ACCATGATACTTATTTTGGATGGGG | 58.923 | 40.000 | 0.00 | 0.00 | 34.58 | 4.96 |
2769 | 3531 | 7.601705 | AACCATGATACTTATTTTGGATGGG | 57.398 | 36.000 | 0.00 | 0.00 | 34.58 | 4.00 |
2786 | 3548 | 9.487790 | GATCCAAAATTTGAACTAAAACCATGA | 57.512 | 29.630 | 7.37 | 0.00 | 0.00 | 3.07 |
2787 | 3549 | 9.270640 | TGATCCAAAATTTGAACTAAAACCATG | 57.729 | 29.630 | 7.37 | 0.00 | 0.00 | 3.66 |
2788 | 3550 | 9.492973 | CTGATCCAAAATTTGAACTAAAACCAT | 57.507 | 29.630 | 7.37 | 0.00 | 0.00 | 3.55 |
2789 | 3551 | 8.700051 | TCTGATCCAAAATTTGAACTAAAACCA | 58.300 | 29.630 | 7.37 | 0.00 | 0.00 | 3.67 |
2790 | 3552 | 9.196552 | CTCTGATCCAAAATTTGAACTAAAACC | 57.803 | 33.333 | 7.37 | 0.00 | 0.00 | 3.27 |
2791 | 3553 | 9.196552 | CCTCTGATCCAAAATTTGAACTAAAAC | 57.803 | 33.333 | 7.37 | 0.00 | 0.00 | 2.43 |
2792 | 3554 | 8.367156 | CCCTCTGATCCAAAATTTGAACTAAAA | 58.633 | 33.333 | 7.37 | 0.00 | 0.00 | 1.52 |
2793 | 3555 | 7.728083 | TCCCTCTGATCCAAAATTTGAACTAAA | 59.272 | 33.333 | 7.37 | 0.00 | 0.00 | 1.85 |
2794 | 3556 | 7.237982 | TCCCTCTGATCCAAAATTTGAACTAA | 58.762 | 34.615 | 7.37 | 0.00 | 0.00 | 2.24 |
2795 | 3557 | 6.789268 | TCCCTCTGATCCAAAATTTGAACTA | 58.211 | 36.000 | 7.37 | 0.00 | 0.00 | 2.24 |
2796 | 3558 | 5.644188 | TCCCTCTGATCCAAAATTTGAACT | 58.356 | 37.500 | 7.37 | 0.00 | 0.00 | 3.01 |
2797 | 3559 | 5.478332 | ACTCCCTCTGATCCAAAATTTGAAC | 59.522 | 40.000 | 7.37 | 0.00 | 0.00 | 3.18 |
2798 | 3560 | 5.644188 | ACTCCCTCTGATCCAAAATTTGAA | 58.356 | 37.500 | 7.37 | 0.00 | 0.00 | 2.69 |
2799 | 3561 | 5.261040 | ACTCCCTCTGATCCAAAATTTGA | 57.739 | 39.130 | 7.37 | 0.00 | 0.00 | 2.69 |
2800 | 3562 | 5.945784 | TGTACTCCCTCTGATCCAAAATTTG | 59.054 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2801 | 3563 | 6.139679 | TGTACTCCCTCTGATCCAAAATTT | 57.860 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2802 | 3564 | 5.779241 | TGTACTCCCTCTGATCCAAAATT | 57.221 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
2803 | 3565 | 5.488919 | TCTTGTACTCCCTCTGATCCAAAAT | 59.511 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2804 | 3566 | 4.844085 | TCTTGTACTCCCTCTGATCCAAAA | 59.156 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
2805 | 3567 | 4.425772 | TCTTGTACTCCCTCTGATCCAAA | 58.574 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
2806 | 3568 | 4.061131 | TCTTGTACTCCCTCTGATCCAA | 57.939 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2807 | 3569 | 3.757947 | TCTTGTACTCCCTCTGATCCA | 57.242 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2808 | 3570 | 6.071984 | TCTATTCTTGTACTCCCTCTGATCC | 58.928 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2809 | 3571 | 7.430441 | GTTCTATTCTTGTACTCCCTCTGATC | 58.570 | 42.308 | 0.00 | 0.00 | 0.00 | 2.92 |
2810 | 3572 | 6.039941 | CGTTCTATTCTTGTACTCCCTCTGAT | 59.960 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
2811 | 3573 | 5.357314 | CGTTCTATTCTTGTACTCCCTCTGA | 59.643 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2812 | 3574 | 5.125739 | ACGTTCTATTCTTGTACTCCCTCTG | 59.874 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2813 | 3575 | 5.262804 | ACGTTCTATTCTTGTACTCCCTCT | 58.737 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2814 | 3576 | 5.579564 | ACGTTCTATTCTTGTACTCCCTC | 57.420 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2815 | 3577 | 6.186234 | AGTACGTTCTATTCTTGTACTCCCT | 58.814 | 40.000 | 0.00 | 0.00 | 41.20 | 4.20 |
2816 | 3578 | 6.448207 | AGTACGTTCTATTCTTGTACTCCC | 57.552 | 41.667 | 0.00 | 0.00 | 41.20 | 4.30 |
2819 | 3581 | 7.066043 | CCTGAGAGTACGTTCTATTCTTGTACT | 59.934 | 40.741 | 0.00 | 3.23 | 46.04 | 2.73 |
2820 | 3582 | 7.188157 | CCTGAGAGTACGTTCTATTCTTGTAC | 58.812 | 42.308 | 0.00 | 0.00 | 36.52 | 2.90 |
2821 | 3583 | 6.183360 | GCCTGAGAGTACGTTCTATTCTTGTA | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.41 |
2822 | 3584 | 5.393243 | GCCTGAGAGTACGTTCTATTCTTGT | 60.393 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2823 | 3585 | 5.038033 | GCCTGAGAGTACGTTCTATTCTTG | 58.962 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
2824 | 3586 | 4.705507 | TGCCTGAGAGTACGTTCTATTCTT | 59.294 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2825 | 3587 | 4.270834 | TGCCTGAGAGTACGTTCTATTCT | 58.729 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2826 | 3588 | 4.634184 | TGCCTGAGAGTACGTTCTATTC | 57.366 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
2827 | 3589 | 4.402793 | ACATGCCTGAGAGTACGTTCTATT | 59.597 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
2828 | 3590 | 3.954904 | ACATGCCTGAGAGTACGTTCTAT | 59.045 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2829 | 3591 | 3.128764 | CACATGCCTGAGAGTACGTTCTA | 59.871 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
2830 | 3592 | 2.094494 | CACATGCCTGAGAGTACGTTCT | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2831 | 3593 | 2.263077 | CACATGCCTGAGAGTACGTTC | 58.737 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
2832 | 3594 | 1.066858 | CCACATGCCTGAGAGTACGTT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.99 |
2833 | 3595 | 0.532573 | CCACATGCCTGAGAGTACGT | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.57 |
2834 | 3596 | 0.807667 | GCCACATGCCTGAGAGTACG | 60.808 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2835 | 3597 | 0.250234 | TGCCACATGCCTGAGAGTAC | 59.750 | 55.000 | 0.00 | 0.00 | 40.16 | 2.73 |
2836 | 3598 | 0.250234 | GTGCCACATGCCTGAGAGTA | 59.750 | 55.000 | 0.00 | 0.00 | 40.16 | 2.59 |
2837 | 3599 | 1.002868 | GTGCCACATGCCTGAGAGT | 60.003 | 57.895 | 0.00 | 0.00 | 40.16 | 3.24 |
2838 | 3600 | 1.748122 | GGTGCCACATGCCTGAGAG | 60.748 | 63.158 | 0.00 | 0.00 | 40.16 | 3.20 |
2839 | 3601 | 2.066700 | TTGGTGCCACATGCCTGAGA | 62.067 | 55.000 | 0.00 | 0.00 | 40.16 | 3.27 |
2840 | 3602 | 1.180456 | TTTGGTGCCACATGCCTGAG | 61.180 | 55.000 | 0.00 | 0.00 | 40.16 | 3.35 |
2841 | 3603 | 0.758310 | TTTTGGTGCCACATGCCTGA | 60.758 | 50.000 | 0.00 | 0.00 | 40.16 | 3.86 |
2842 | 3604 | 0.322322 | ATTTTGGTGCCACATGCCTG | 59.678 | 50.000 | 0.00 | 0.00 | 40.16 | 4.85 |
2843 | 3605 | 1.826720 | CTATTTTGGTGCCACATGCCT | 59.173 | 47.619 | 0.00 | 0.00 | 40.16 | 4.75 |
2844 | 3606 | 1.824230 | TCTATTTTGGTGCCACATGCC | 59.176 | 47.619 | 0.00 | 0.00 | 40.16 | 4.40 |
2845 | 3607 | 3.591196 | TTCTATTTTGGTGCCACATGC | 57.409 | 42.857 | 0.00 | 0.00 | 41.77 | 4.06 |
2846 | 3608 | 5.075858 | ACATTCTATTTTGGTGCCACATG | 57.924 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
2847 | 3609 | 6.849085 | TTACATTCTATTTTGGTGCCACAT | 57.151 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
2848 | 3610 | 6.849085 | ATTACATTCTATTTTGGTGCCACA | 57.151 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
2849 | 3611 | 9.301153 | CTTAATTACATTCTATTTTGGTGCCAC | 57.699 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
2850 | 3612 | 9.030452 | ACTTAATTACATTCTATTTTGGTGCCA | 57.970 | 29.630 | 0.00 | 0.00 | 0.00 | 4.92 |
2851 | 3613 | 9.869757 | AACTTAATTACATTCTATTTTGGTGCC | 57.130 | 29.630 | 0.00 | 0.00 | 0.00 | 5.01 |
2860 | 3622 | 9.956720 | GCAAGATGCAACTTAATTACATTCTAT | 57.043 | 29.630 | 9.09 | 0.00 | 44.26 | 1.98 |
2874 | 3636 | 7.227910 | AATTTTCAAATTCAGCAAGATGCAACT | 59.772 | 29.630 | 5.01 | 0.00 | 38.90 | 3.16 |
2875 | 3637 | 7.357303 | AATTTTCAAATTCAGCAAGATGCAAC | 58.643 | 30.769 | 5.01 | 0.00 | 38.90 | 4.17 |
2876 | 3638 | 7.499321 | AATTTTCAAATTCAGCAAGATGCAA | 57.501 | 28.000 | 5.01 | 0.00 | 38.90 | 4.08 |
2877 | 3639 | 7.499321 | AAATTTTCAAATTCAGCAAGATGCA | 57.501 | 28.000 | 5.01 | 0.00 | 40.73 | 3.96 |
2878 | 3640 | 7.858879 | ACAAAATTTTCAAATTCAGCAAGATGC | 59.141 | 29.630 | 0.00 | 0.00 | 39.55 | 3.91 |
2879 | 3641 | 9.165014 | CACAAAATTTTCAAATTCAGCAAGATG | 57.835 | 29.630 | 0.00 | 0.00 | 37.62 | 2.90 |
2880 | 3642 | 7.858879 | GCACAAAATTTTCAAATTCAGCAAGAT | 59.141 | 29.630 | 0.00 | 0.00 | 37.62 | 2.40 |
2881 | 3643 | 7.148289 | TGCACAAAATTTTCAAATTCAGCAAGA | 60.148 | 29.630 | 0.00 | 0.00 | 37.62 | 3.02 |
2882 | 3644 | 6.967767 | TGCACAAAATTTTCAAATTCAGCAAG | 59.032 | 30.769 | 0.00 | 0.00 | 37.62 | 4.01 |
2883 | 3645 | 6.849502 | TGCACAAAATTTTCAAATTCAGCAA | 58.150 | 28.000 | 0.00 | 0.00 | 37.62 | 3.91 |
2884 | 3646 | 6.432607 | TGCACAAAATTTTCAAATTCAGCA | 57.567 | 29.167 | 0.00 | 4.45 | 37.62 | 4.41 |
2885 | 3647 | 7.133513 | TGATGCACAAAATTTTCAAATTCAGC | 58.866 | 30.769 | 0.00 | 0.00 | 37.62 | 4.26 |
2886 | 3648 | 9.504710 | TTTGATGCACAAAATTTTCAAATTCAG | 57.495 | 25.926 | 0.00 | 0.00 | 44.16 | 3.02 |
2912 | 3674 | 9.639601 | TCGATCGCATCATTTATTACTAAGAAT | 57.360 | 29.630 | 11.09 | 0.00 | 0.00 | 2.40 |
2913 | 3675 | 9.471084 | TTCGATCGCATCATTTATTACTAAGAA | 57.529 | 29.630 | 11.09 | 0.00 | 0.00 | 2.52 |
2914 | 3676 | 9.639601 | ATTCGATCGCATCATTTATTACTAAGA | 57.360 | 29.630 | 11.09 | 0.00 | 0.00 | 2.10 |
2918 | 3680 | 8.773645 | TGAAATTCGATCGCATCATTTATTACT | 58.226 | 29.630 | 11.09 | 0.00 | 0.00 | 2.24 |
2919 | 3681 | 8.933438 | TGAAATTCGATCGCATCATTTATTAC | 57.067 | 30.769 | 11.09 | 1.94 | 0.00 | 1.89 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.