Multiple sequence alignment - TraesCS2A01G170800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G170800 chr2A 100.000 2438 0 0 1 2438 126471284 126473721 0.000000e+00 4503
1 TraesCS2A01G170800 chr2A 91.089 303 22 5 209 508 188909276 188909576 2.920000e-109 405
2 TraesCS2A01G170800 chr2B 89.336 1791 102 36 560 2315 175059808 175061544 0.000000e+00 2167
3 TraesCS2A01G170800 chr2B 84.855 482 50 21 1846 2315 676212039 676211569 4.750000e-127 464
4 TraesCS2A01G170800 chr2B 91.118 304 23 3 208 507 389456926 389457229 2.260000e-110 409
5 TraesCS2A01G170800 chr2B 90.820 305 24 3 208 508 798371636 798371940 2.920000e-109 405
6 TraesCS2A01G170800 chr2B 82.822 163 20 3 6 165 175059594 175059751 3.270000e-29 139
7 TraesCS2A01G170800 chr2D 88.629 1539 95 47 506 2017 122032147 122033632 0.000000e+00 1799
8 TraesCS2A01G170800 chr2D 94.608 204 9 2 6 208 122031961 122032163 5.060000e-82 315
9 TraesCS2A01G170800 chr6B 83.702 724 76 24 1720 2438 691467483 691466797 0.000000e+00 645
10 TraesCS2A01G170800 chr5B 85.744 484 45 22 1846 2316 638203170 638202698 7.830000e-135 490
11 TraesCS2A01G170800 chr7B 86.374 455 46 15 1874 2316 615592867 615592417 1.310000e-132 483
12 TraesCS2A01G170800 chr7B 84.816 461 48 17 1874 2316 3655986 3656442 6.190000e-121 444
13 TraesCS2A01G170800 chr7B 90.789 304 23 4 209 507 449544493 449544190 3.780000e-108 401
14 TraesCS2A01G170800 chr6A 85.466 461 45 16 1874 2316 401369790 401370246 6.140000e-126 460
15 TraesCS2A01G170800 chr5A 85.466 461 45 17 1874 2316 133824281 133824737 6.140000e-126 460
16 TraesCS2A01G170800 chr5A 90.820 305 23 4 208 507 600290216 600290520 1.050000e-108 403
17 TraesCS2A01G170800 chr5A 90.228 307 26 4 209 511 689656862 689657168 4.880000e-107 398
18 TraesCS2A01G170800 chr4A 85.033 461 47 17 1874 2316 490346404 490346860 1.330000e-122 449
19 TraesCS2A01G170800 chr4A 91.419 303 22 2 209 507 12206912 12206610 1.740000e-111 412
20 TraesCS2A01G170800 chr1A 85.033 461 47 17 1874 2316 539846267 539845811 1.330000e-122 449
21 TraesCS2A01G170800 chr3A 90.820 305 22 6 209 507 128134677 128134981 1.050000e-108 403
22 TraesCS2A01G170800 chr3B 90.291 309 25 3 204 507 788207169 788206861 1.360000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G170800 chr2A 126471284 126473721 2437 False 4503 4503 100.0000 1 2438 1 chr2A.!!$F1 2437
1 TraesCS2A01G170800 chr2B 175059594 175061544 1950 False 1153 2167 86.0790 6 2315 2 chr2B.!!$F3 2309
2 TraesCS2A01G170800 chr2D 122031961 122033632 1671 False 1057 1799 91.6185 6 2017 2 chr2D.!!$F1 2011
3 TraesCS2A01G170800 chr6B 691466797 691467483 686 True 645 645 83.7020 1720 2438 1 chr6B.!!$R1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 416 0.036875 TGTCGGCTCAGTCTCTCAGA 59.963 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2423 0.108804 GGTAGAACAGCTGCTACGCA 60.109 55.0 15.27 0.0 38.25 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 36 6.718454 AGAAACTGACATGTCATGAGGAAAAT 59.282 34.615 28.00 7.88 39.13 1.82
40 44 4.074259 TGTCATGAGGAAAATGTCACCAG 58.926 43.478 0.00 0.00 0.00 4.00
98 102 8.682936 AAATCATTTGTATATGTCACCCTCTC 57.317 34.615 0.00 0.00 0.00 3.20
120 124 4.277174 TCGCAAACATTCACCAGTTAACAT 59.723 37.500 8.61 0.00 0.00 2.71
193 197 1.077501 CGAGCCCACACCCATCAAT 60.078 57.895 0.00 0.00 0.00 2.57
194 198 0.180171 CGAGCCCACACCCATCAATA 59.820 55.000 0.00 0.00 0.00 1.90
201 205 3.495100 CCCACACCCATCAATAGACTAGC 60.495 52.174 0.00 0.00 0.00 3.42
202 206 3.389329 CCACACCCATCAATAGACTAGCT 59.611 47.826 0.00 0.00 0.00 3.32
203 207 4.375272 CACACCCATCAATAGACTAGCTG 58.625 47.826 0.00 0.00 0.00 4.24
204 208 4.033709 ACACCCATCAATAGACTAGCTGT 58.966 43.478 0.00 0.00 0.00 4.40
205 209 4.471386 ACACCCATCAATAGACTAGCTGTT 59.529 41.667 0.00 0.00 0.00 3.16
206 210 5.053145 CACCCATCAATAGACTAGCTGTTC 58.947 45.833 0.00 0.00 0.00 3.18
207 211 4.965532 ACCCATCAATAGACTAGCTGTTCT 59.034 41.667 0.00 0.00 0.00 3.01
208 212 5.163364 ACCCATCAATAGACTAGCTGTTCTG 60.163 44.000 8.76 0.00 0.00 3.02
209 213 4.749099 CCATCAATAGACTAGCTGTTCTGC 59.251 45.833 8.76 0.00 0.00 4.26
210 214 4.033990 TCAATAGACTAGCTGTTCTGCG 57.966 45.455 8.76 0.00 38.13 5.18
211 215 3.694566 TCAATAGACTAGCTGTTCTGCGA 59.305 43.478 8.76 1.35 38.13 5.10
212 216 4.157840 TCAATAGACTAGCTGTTCTGCGAA 59.842 41.667 8.76 0.00 38.13 4.70
213 217 4.927978 ATAGACTAGCTGTTCTGCGAAT 57.072 40.909 8.76 0.00 38.13 3.34
214 218 3.157932 AGACTAGCTGTTCTGCGAATC 57.842 47.619 0.00 0.00 38.13 2.52
215 219 2.493675 AGACTAGCTGTTCTGCGAATCA 59.506 45.455 0.00 0.00 38.13 2.57
216 220 3.056536 AGACTAGCTGTTCTGCGAATCAA 60.057 43.478 0.00 0.00 38.13 2.57
217 221 2.996621 ACTAGCTGTTCTGCGAATCAAC 59.003 45.455 0.00 0.00 38.13 3.18
218 222 0.792640 AGCTGTTCTGCGAATCAACG 59.207 50.000 0.00 0.00 38.13 4.10
219 223 0.512952 GCTGTTCTGCGAATCAACGT 59.487 50.000 0.00 0.00 35.59 3.99
220 224 1.722751 GCTGTTCTGCGAATCAACGTG 60.723 52.381 0.00 0.00 35.59 4.49
221 225 0.865111 TGTTCTGCGAATCAACGTGG 59.135 50.000 0.00 0.00 35.59 4.94
222 226 0.865769 GTTCTGCGAATCAACGTGGT 59.134 50.000 0.00 0.00 35.59 4.16
223 227 1.263217 GTTCTGCGAATCAACGTGGTT 59.737 47.619 0.00 0.00 35.59 3.67
224 228 0.865111 TCTGCGAATCAACGTGGTTG 59.135 50.000 2.16 2.16 43.99 3.77
231 235 3.865477 TCAACGTGGTTGAGTTGGT 57.135 47.368 7.07 0.00 45.88 3.67
232 236 2.116827 TCAACGTGGTTGAGTTGGTT 57.883 45.000 7.07 0.00 45.88 3.67
233 237 3.263489 TCAACGTGGTTGAGTTGGTTA 57.737 42.857 7.07 0.00 45.88 2.85
234 238 3.199677 TCAACGTGGTTGAGTTGGTTAG 58.800 45.455 7.07 0.00 45.88 2.34
235 239 2.249844 ACGTGGTTGAGTTGGTTAGG 57.750 50.000 0.00 0.00 0.00 2.69
236 240 1.487558 ACGTGGTTGAGTTGGTTAGGT 59.512 47.619 0.00 0.00 0.00 3.08
237 241 1.871039 CGTGGTTGAGTTGGTTAGGTG 59.129 52.381 0.00 0.00 0.00 4.00
238 242 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
239 243 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
240 244 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
241 245 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
242 246 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
243 247 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
244 248 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
245 249 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
246 250 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
247 251 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
248 252 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
249 253 3.253220 TGGTTAGGTGGACAGTGGTATT 58.747 45.455 0.00 0.00 0.00 1.89
250 254 3.262405 TGGTTAGGTGGACAGTGGTATTC 59.738 47.826 0.00 0.00 0.00 1.75
251 255 3.370209 GGTTAGGTGGACAGTGGTATTCC 60.370 52.174 0.00 0.00 0.00 3.01
252 256 1.286248 AGGTGGACAGTGGTATTCCC 58.714 55.000 0.00 0.00 0.00 3.97
253 257 0.988832 GGTGGACAGTGGTATTCCCA 59.011 55.000 0.00 0.00 42.51 4.37
263 267 1.568597 TGGTATTCCCAACCCATCAGG 59.431 52.381 0.00 0.00 41.50 3.86
264 268 1.850345 GGTATTCCCAACCCATCAGGA 59.150 52.381 0.00 0.00 39.89 3.86
265 269 2.447047 GGTATTCCCAACCCATCAGGAT 59.553 50.000 0.00 0.00 39.89 3.24
266 270 3.117131 GGTATTCCCAACCCATCAGGATT 60.117 47.826 0.00 0.00 39.89 3.01
267 271 2.826674 TTCCCAACCCATCAGGATTC 57.173 50.000 0.00 0.00 39.89 2.52
268 272 1.679981 TCCCAACCCATCAGGATTCA 58.320 50.000 0.00 0.00 39.89 2.57
269 273 1.999295 TCCCAACCCATCAGGATTCAA 59.001 47.619 0.00 0.00 39.89 2.69
270 274 2.381618 TCCCAACCCATCAGGATTCAAA 59.618 45.455 0.00 0.00 39.89 2.69
271 275 3.012730 TCCCAACCCATCAGGATTCAAAT 59.987 43.478 0.00 0.00 39.89 2.32
272 276 3.385755 CCCAACCCATCAGGATTCAAATC 59.614 47.826 0.00 0.00 39.89 2.17
283 287 3.265070 GATTCAAATCCTGATGCTCGC 57.735 47.619 0.00 0.00 32.78 5.03
284 288 2.112380 TTCAAATCCTGATGCTCGCA 57.888 45.000 0.00 0.00 32.78 5.10
285 289 2.336945 TCAAATCCTGATGCTCGCAT 57.663 45.000 3.70 3.70 39.69 4.73
286 290 2.646930 TCAAATCCTGATGCTCGCATT 58.353 42.857 5.79 0.00 36.70 3.56
287 291 3.807553 TCAAATCCTGATGCTCGCATTA 58.192 40.909 5.79 0.89 36.70 1.90
288 292 4.392047 TCAAATCCTGATGCTCGCATTAT 58.608 39.130 5.79 0.00 36.70 1.28
289 293 4.823442 TCAAATCCTGATGCTCGCATTATT 59.177 37.500 5.79 2.29 36.70 1.40
290 294 5.049198 TCAAATCCTGATGCTCGCATTATTC 60.049 40.000 5.79 0.00 36.70 1.75
291 295 2.771089 TCCTGATGCTCGCATTATTCC 58.229 47.619 5.79 0.00 36.70 3.01
292 296 2.369860 TCCTGATGCTCGCATTATTCCT 59.630 45.455 5.79 0.00 36.70 3.36
293 297 2.483106 CCTGATGCTCGCATTATTCCTG 59.517 50.000 5.79 0.00 36.70 3.86
294 298 2.483106 CTGATGCTCGCATTATTCCTGG 59.517 50.000 5.79 0.00 36.70 4.45
295 299 2.104622 TGATGCTCGCATTATTCCTGGA 59.895 45.455 5.79 0.00 36.70 3.86
296 300 2.936919 TGCTCGCATTATTCCTGGAT 57.063 45.000 0.00 0.00 0.00 3.41
297 301 3.213206 TGCTCGCATTATTCCTGGATT 57.787 42.857 0.00 0.00 0.00 3.01
298 302 3.554934 TGCTCGCATTATTCCTGGATTT 58.445 40.909 0.00 0.00 0.00 2.17
299 303 4.713553 TGCTCGCATTATTCCTGGATTTA 58.286 39.130 0.00 0.00 0.00 1.40
300 304 5.316167 TGCTCGCATTATTCCTGGATTTAT 58.684 37.500 0.00 0.00 0.00 1.40
301 305 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
302 306 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
303 307 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
304 308 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
305 309 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
306 310 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
314 318 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
315 319 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
316 320 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
317 321 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
318 322 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
319 323 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
320 324 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
321 325 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
333 337 2.741930 CGATGCGCTTTCAGTGAGA 58.258 52.632 9.73 0.00 0.00 3.27
334 338 0.644331 CGATGCGCTTTCAGTGAGAG 59.356 55.000 9.73 6.31 0.00 3.20
335 339 1.733718 CGATGCGCTTTCAGTGAGAGA 60.734 52.381 14.62 0.00 0.00 3.10
336 340 2.341257 GATGCGCTTTCAGTGAGAGAA 58.659 47.619 14.62 0.00 0.00 2.87
337 341 1.788258 TGCGCTTTCAGTGAGAGAAG 58.212 50.000 14.62 6.76 0.00 2.85
338 342 1.341209 TGCGCTTTCAGTGAGAGAAGA 59.659 47.619 14.62 0.00 0.00 2.87
339 343 1.724082 GCGCTTTCAGTGAGAGAAGAC 59.276 52.381 14.62 2.15 0.00 3.01
340 344 1.982223 CGCTTTCAGTGAGAGAAGACG 59.018 52.381 14.62 9.36 0.00 4.18
341 345 2.605823 CGCTTTCAGTGAGAGAAGACGT 60.606 50.000 14.62 0.00 0.00 4.34
342 346 3.385577 GCTTTCAGTGAGAGAAGACGTT 58.614 45.455 14.62 0.00 0.00 3.99
343 347 3.427193 GCTTTCAGTGAGAGAAGACGTTC 59.573 47.826 14.62 0.00 0.00 3.95
344 348 3.644884 TTCAGTGAGAGAAGACGTTCC 57.355 47.619 0.00 0.00 32.48 3.62
345 349 1.887198 TCAGTGAGAGAAGACGTTCCC 59.113 52.381 0.00 0.00 32.48 3.97
346 350 0.882474 AGTGAGAGAAGACGTTCCCG 59.118 55.000 0.00 0.00 40.83 5.14
355 359 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
356 360 2.051076 CGTTCCCGTCGACGACAA 60.051 61.111 37.65 25.24 41.53 3.18
357 361 2.078914 CGTTCCCGTCGACGACAAG 61.079 63.158 37.65 20.95 41.53 3.16
358 362 1.731969 GTTCCCGTCGACGACAAGG 60.732 63.158 37.65 28.37 43.02 3.61
359 363 3.562779 TTCCCGTCGACGACAAGGC 62.563 63.158 37.65 0.45 43.02 4.35
366 370 2.879462 GACGACAAGGCGCCTACG 60.879 66.667 32.96 32.96 44.07 3.51
367 371 3.332493 GACGACAAGGCGCCTACGA 62.332 63.158 37.63 0.00 43.93 3.43
368 372 2.104331 CGACAAGGCGCCTACGAT 59.896 61.111 33.07 15.80 43.93 3.73
369 373 2.230940 CGACAAGGCGCCTACGATG 61.231 63.158 33.07 26.40 43.93 3.84
370 374 1.141019 GACAAGGCGCCTACGATGA 59.859 57.895 33.07 0.00 43.93 2.92
371 375 1.146358 GACAAGGCGCCTACGATGAC 61.146 60.000 33.07 20.48 43.93 3.06
372 376 1.141881 CAAGGCGCCTACGATGACT 59.858 57.895 33.07 8.62 43.93 3.41
373 377 0.460284 CAAGGCGCCTACGATGACTT 60.460 55.000 33.07 7.71 43.93 3.01
374 378 0.179108 AAGGCGCCTACGATGACTTC 60.179 55.000 33.07 0.00 43.93 3.01
390 394 8.561932 CGATGACTTCGTAAATCTTAAGATGA 57.438 34.615 18.61 8.72 43.01 2.92
391 395 9.186323 CGATGACTTCGTAAATCTTAAGATGAT 57.814 33.333 18.61 12.88 43.01 2.45
398 402 8.965986 TCGTAAATCTTAAGATGATATGTCGG 57.034 34.615 18.61 2.76 34.49 4.79
399 403 7.541091 TCGTAAATCTTAAGATGATATGTCGGC 59.459 37.037 18.61 2.74 34.49 5.54
400 404 7.542477 CGTAAATCTTAAGATGATATGTCGGCT 59.458 37.037 18.61 0.00 34.49 5.52
401 405 7.897575 AAATCTTAAGATGATATGTCGGCTC 57.102 36.000 18.61 0.00 34.49 4.70
402 406 6.596309 ATCTTAAGATGATATGTCGGCTCA 57.404 37.500 17.26 0.00 32.68 4.26
403 407 6.018589 TCTTAAGATGATATGTCGGCTCAG 57.981 41.667 0.00 0.00 0.00 3.35
404 408 5.536538 TCTTAAGATGATATGTCGGCTCAGT 59.463 40.000 0.00 0.00 0.00 3.41
405 409 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
406 410 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
407 411 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
408 412 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
409 413 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
410 414 2.420058 TATGTCGGCTCAGTCTCTCA 57.580 50.000 0.00 0.00 0.00 3.27
411 415 1.102154 ATGTCGGCTCAGTCTCTCAG 58.898 55.000 0.00 0.00 0.00 3.35
412 416 0.036875 TGTCGGCTCAGTCTCTCAGA 59.963 55.000 0.00 0.00 0.00 3.27
413 417 0.732571 GTCGGCTCAGTCTCTCAGAG 59.267 60.000 0.00 0.00 33.62 3.35
414 418 0.615850 TCGGCTCAGTCTCTCAGAGA 59.384 55.000 0.00 0.00 36.22 3.10
415 419 1.211703 TCGGCTCAGTCTCTCAGAGAT 59.788 52.381 7.89 0.00 40.98 2.75
416 420 1.334556 CGGCTCAGTCTCTCAGAGATG 59.665 57.143 7.89 7.62 40.98 2.90
417 421 1.067516 GGCTCAGTCTCTCAGAGATGC 59.932 57.143 7.89 10.04 40.98 3.91
418 422 2.026641 GCTCAGTCTCTCAGAGATGCT 58.973 52.381 7.89 0.00 40.98 3.79
419 423 2.033801 GCTCAGTCTCTCAGAGATGCTC 59.966 54.545 7.89 0.00 40.98 4.26
420 424 3.281158 CTCAGTCTCTCAGAGATGCTCA 58.719 50.000 7.89 0.00 40.98 4.26
421 425 3.887110 CTCAGTCTCTCAGAGATGCTCAT 59.113 47.826 7.89 0.00 40.98 2.90
422 426 5.046288 TCAGTCTCTCAGAGATGCTCATA 57.954 43.478 7.89 0.00 40.98 2.15
423 427 5.065235 TCAGTCTCTCAGAGATGCTCATAG 58.935 45.833 7.89 0.00 40.98 2.23
424 428 5.065235 CAGTCTCTCAGAGATGCTCATAGA 58.935 45.833 7.89 0.00 40.98 1.98
425 429 5.180680 CAGTCTCTCAGAGATGCTCATAGAG 59.819 48.000 7.89 14.74 40.98 2.43
426 430 4.456911 GTCTCTCAGAGATGCTCATAGAGG 59.543 50.000 7.89 8.54 40.98 3.69
427 431 4.104579 TCTCTCAGAGATGCTCATAGAGGT 59.895 45.833 0.00 0.00 39.70 3.85
428 432 5.309282 TCTCTCAGAGATGCTCATAGAGGTA 59.691 44.000 0.00 5.47 39.70 3.08
429 433 5.559770 TCTCAGAGATGCTCATAGAGGTAG 58.440 45.833 0.00 0.00 31.77 3.18
430 434 5.309282 TCTCAGAGATGCTCATAGAGGTAGA 59.691 44.000 0.00 0.00 31.77 2.59
431 435 5.946486 TCAGAGATGCTCATAGAGGTAGAA 58.054 41.667 0.00 0.00 32.06 2.10
432 436 6.551085 TCAGAGATGCTCATAGAGGTAGAAT 58.449 40.000 0.00 0.00 32.06 2.40
433 437 7.694093 TCAGAGATGCTCATAGAGGTAGAATA 58.306 38.462 0.00 0.00 32.06 1.75
434 438 8.335484 TCAGAGATGCTCATAGAGGTAGAATAT 58.665 37.037 0.00 0.00 32.06 1.28
435 439 8.407832 CAGAGATGCTCATAGAGGTAGAATATG 58.592 40.741 0.00 0.00 32.06 1.78
436 440 8.115384 AGAGATGCTCATAGAGGTAGAATATGT 58.885 37.037 0.00 0.00 32.06 2.29
437 441 8.065473 AGATGCTCATAGAGGTAGAATATGTG 57.935 38.462 0.00 0.00 0.00 3.21
438 442 7.673504 AGATGCTCATAGAGGTAGAATATGTGT 59.326 37.037 0.00 0.00 0.00 3.72
439 443 6.986250 TGCTCATAGAGGTAGAATATGTGTG 58.014 40.000 0.00 0.00 0.00 3.82
440 444 5.866633 GCTCATAGAGGTAGAATATGTGTGC 59.133 44.000 0.00 0.00 0.00 4.57
441 445 6.013842 TCATAGAGGTAGAATATGTGTGCG 57.986 41.667 0.00 0.00 0.00 5.34
442 446 3.099267 AGAGGTAGAATATGTGTGCGC 57.901 47.619 0.00 0.00 0.00 6.09
443 447 1.787155 GAGGTAGAATATGTGTGCGCG 59.213 52.381 0.00 0.00 0.00 6.86
444 448 1.136305 AGGTAGAATATGTGTGCGCGT 59.864 47.619 8.43 0.00 0.00 6.01
445 449 1.931172 GGTAGAATATGTGTGCGCGTT 59.069 47.619 8.43 0.00 0.00 4.84
446 450 2.350498 GGTAGAATATGTGTGCGCGTTT 59.650 45.455 8.43 0.00 0.00 3.60
447 451 3.552699 GGTAGAATATGTGTGCGCGTTTA 59.447 43.478 8.43 0.00 0.00 2.01
448 452 4.210537 GGTAGAATATGTGTGCGCGTTTAT 59.789 41.667 8.43 0.00 0.00 1.40
449 453 5.403166 GGTAGAATATGTGTGCGCGTTTATA 59.597 40.000 8.43 0.00 0.00 0.98
450 454 5.977171 AGAATATGTGTGCGCGTTTATAA 57.023 34.783 8.43 0.00 0.00 0.98
451 455 6.352682 AGAATATGTGTGCGCGTTTATAAA 57.647 33.333 8.43 0.00 0.00 1.40
452 456 6.777101 AGAATATGTGTGCGCGTTTATAAAA 58.223 32.000 8.43 0.00 0.00 1.52
453 457 6.905076 AGAATATGTGTGCGCGTTTATAAAAG 59.095 34.615 8.43 6.76 0.00 2.27
454 458 3.881780 TGTGTGCGCGTTTATAAAAGT 57.118 38.095 8.43 0.00 0.00 2.66
455 459 3.546617 TGTGTGCGCGTTTATAAAAGTG 58.453 40.909 17.12 17.12 0.00 3.16
456 460 3.247886 TGTGTGCGCGTTTATAAAAGTGA 59.752 39.130 23.25 9.64 31.04 3.41
457 461 3.838550 GTGTGCGCGTTTATAAAAGTGAG 59.161 43.478 23.25 11.82 31.04 3.51
458 462 3.495377 TGTGCGCGTTTATAAAAGTGAGT 59.505 39.130 23.25 0.00 31.04 3.41
459 463 3.838550 GTGCGCGTTTATAAAAGTGAGTG 59.161 43.478 23.25 10.40 31.04 3.51
460 464 3.495377 TGCGCGTTTATAAAAGTGAGTGT 59.505 39.130 23.25 0.00 31.04 3.55
461 465 4.685165 TGCGCGTTTATAAAAGTGAGTGTA 59.315 37.500 23.25 7.25 31.04 2.90
462 466 5.349270 TGCGCGTTTATAAAAGTGAGTGTAT 59.651 36.000 23.25 0.00 31.04 2.29
463 467 5.671140 GCGCGTTTATAAAAGTGAGTGTATG 59.329 40.000 23.25 0.00 31.04 2.39
464 468 5.671140 CGCGTTTATAAAAGTGAGTGTATGC 59.329 40.000 16.65 0.77 31.04 3.14
465 469 5.671140 GCGTTTATAAAAGTGAGTGTATGCG 59.329 40.000 11.91 3.14 0.00 4.73
466 470 5.671140 CGTTTATAAAAGTGAGTGTATGCGC 59.329 40.000 0.00 0.00 0.00 6.09
467 471 6.539324 GTTTATAAAAGTGAGTGTATGCGCA 58.461 36.000 14.96 14.96 0.00 6.09
468 472 6.918892 TTATAAAAGTGAGTGTATGCGCAT 57.081 33.333 28.23 28.23 0.00 4.73
469 473 3.476295 AAAAGTGAGTGTATGCGCATG 57.524 42.857 32.48 0.00 0.00 4.06
470 474 2.099141 AAGTGAGTGTATGCGCATGT 57.901 45.000 32.48 11.40 0.00 3.21
471 475 2.959507 AGTGAGTGTATGCGCATGTA 57.040 45.000 32.48 17.97 0.00 2.29
472 476 3.459232 AGTGAGTGTATGCGCATGTAT 57.541 42.857 32.48 15.41 0.00 2.29
473 477 4.584327 AGTGAGTGTATGCGCATGTATA 57.416 40.909 32.48 10.12 0.00 1.47
474 478 5.139435 AGTGAGTGTATGCGCATGTATAT 57.861 39.130 32.48 14.31 0.00 0.86
475 479 4.925646 AGTGAGTGTATGCGCATGTATATG 59.074 41.667 32.48 0.00 37.36 1.78
476 480 4.923281 GTGAGTGTATGCGCATGTATATGA 59.077 41.667 32.48 8.02 36.36 2.15
477 481 5.405269 GTGAGTGTATGCGCATGTATATGAA 59.595 40.000 32.48 7.18 36.36 2.57
478 482 5.405269 TGAGTGTATGCGCATGTATATGAAC 59.595 40.000 32.48 19.53 36.36 3.18
479 483 4.385748 AGTGTATGCGCATGTATATGAACG 59.614 41.667 32.48 0.00 36.36 3.95
480 484 2.880822 ATGCGCATGTATATGAACGC 57.119 45.000 24.69 14.47 42.40 4.84
481 485 1.864565 TGCGCATGTATATGAACGCT 58.135 45.000 19.42 0.00 42.48 5.07
482 486 2.209273 TGCGCATGTATATGAACGCTT 58.791 42.857 19.42 0.00 42.48 4.68
483 487 2.032979 TGCGCATGTATATGAACGCTTG 60.033 45.455 19.42 0.00 42.48 4.01
484 488 2.032894 GCGCATGTATATGAACGCTTGT 60.033 45.455 14.20 0.00 40.39 3.16
485 489 3.534889 CGCATGTATATGAACGCTTGTG 58.465 45.455 3.28 0.00 36.36 3.33
486 490 3.001228 CGCATGTATATGAACGCTTGTGT 59.999 43.478 3.28 0.00 36.36 3.72
487 491 4.518217 GCATGTATATGAACGCTTGTGTC 58.482 43.478 3.28 0.00 36.36 3.67
488 492 4.271049 GCATGTATATGAACGCTTGTGTCT 59.729 41.667 3.28 0.00 36.36 3.41
489 493 5.731278 CATGTATATGAACGCTTGTGTCTG 58.269 41.667 0.00 0.00 36.36 3.51
490 494 4.816392 TGTATATGAACGCTTGTGTCTGT 58.184 39.130 0.00 0.00 0.00 3.41
491 495 5.956642 TGTATATGAACGCTTGTGTCTGTA 58.043 37.500 0.00 0.00 0.00 2.74
492 496 6.033966 TGTATATGAACGCTTGTGTCTGTAG 58.966 40.000 0.00 0.00 0.00 2.74
493 497 2.882927 TGAACGCTTGTGTCTGTAGT 57.117 45.000 0.00 0.00 0.00 2.73
494 498 2.469826 TGAACGCTTGTGTCTGTAGTG 58.530 47.619 0.00 0.00 0.00 2.74
495 499 2.100087 TGAACGCTTGTGTCTGTAGTGA 59.900 45.455 0.00 0.00 0.00 3.41
496 500 3.243737 TGAACGCTTGTGTCTGTAGTGAT 60.244 43.478 0.00 0.00 0.00 3.06
497 501 2.677199 ACGCTTGTGTCTGTAGTGATG 58.323 47.619 0.00 0.00 0.00 3.07
498 502 1.391485 CGCTTGTGTCTGTAGTGATGC 59.609 52.381 0.00 0.00 0.00 3.91
499 503 2.693069 GCTTGTGTCTGTAGTGATGCT 58.307 47.619 0.00 0.00 0.00 3.79
500 504 3.673323 CGCTTGTGTCTGTAGTGATGCTA 60.673 47.826 0.00 0.00 0.00 3.49
501 505 4.245660 GCTTGTGTCTGTAGTGATGCTAA 58.754 43.478 0.00 0.00 0.00 3.09
502 506 4.690748 GCTTGTGTCTGTAGTGATGCTAAA 59.309 41.667 0.00 0.00 0.00 1.85
503 507 5.179368 GCTTGTGTCTGTAGTGATGCTAAAA 59.821 40.000 0.00 0.00 0.00 1.52
504 508 6.293407 GCTTGTGTCTGTAGTGATGCTAAAAA 60.293 38.462 0.00 0.00 0.00 1.94
557 561 1.751924 GACTAGTGTCCCACTGCTAGG 59.248 57.143 0.00 0.00 45.01 3.02
558 562 1.358103 ACTAGTGTCCCACTGCTAGGA 59.642 52.381 7.13 0.00 45.01 2.94
590 594 2.933906 AGAAAACTTTCGCAACGAGACA 59.066 40.909 0.00 0.00 41.92 3.41
591 595 2.732001 AAACTTTCGCAACGAGACAC 57.268 45.000 0.00 0.00 37.14 3.67
595 605 1.190323 CTTTCGCAACGAGACACTGTC 59.810 52.381 0.38 0.38 37.14 3.51
616 627 1.153353 TTTTAAGGCGAGCAACGAGG 58.847 50.000 7.46 0.00 45.77 4.63
649 661 0.674895 AGGGAGCAACGAGACAATGC 60.675 55.000 0.00 0.00 40.34 3.56
650 662 1.648467 GGGAGCAACGAGACAATGCC 61.648 60.000 0.00 0.00 40.93 4.40
651 663 0.955428 GGAGCAACGAGACAATGCCA 60.955 55.000 0.00 0.00 40.93 4.92
697 720 4.748798 AGCCCAGAGACCCAGGGG 62.749 72.222 11.37 6.87 43.04 4.79
781 804 2.294078 GCCCATAGATAGCCCGCCT 61.294 63.158 0.00 0.00 0.00 5.52
828 851 2.764572 CCTAGGAACCTACATCCAACGT 59.235 50.000 1.05 0.00 39.55 3.99
832 855 1.276989 GAACCTACATCCAACGTCCCA 59.723 52.381 0.00 0.00 0.00 4.37
899 922 4.104897 GCCTTATAAGTCCTTCCATTCCCT 59.895 45.833 11.50 0.00 0.00 4.20
1245 1272 1.222936 GAGGCTCTGGTCCATGGTG 59.777 63.158 12.58 1.15 0.00 4.17
1389 1416 1.117994 AGCTCATCTCCAAGATCGCA 58.882 50.000 9.23 0.00 31.32 5.10
1639 1666 7.559335 TCCATATCTGTGCTCCTATTTATGT 57.441 36.000 0.00 0.00 0.00 2.29
1661 1688 6.664515 TGTTTCGTTTGATCTGTGTTAATCC 58.335 36.000 0.00 0.00 0.00 3.01
1662 1689 5.873179 TTCGTTTGATCTGTGTTAATCCC 57.127 39.130 0.00 0.00 0.00 3.85
1663 1690 5.160607 TCGTTTGATCTGTGTTAATCCCT 57.839 39.130 0.00 0.00 0.00 4.20
1664 1691 6.288941 TCGTTTGATCTGTGTTAATCCCTA 57.711 37.500 0.00 0.00 0.00 3.53
1665 1692 6.703319 TCGTTTGATCTGTGTTAATCCCTAA 58.297 36.000 0.00 0.00 0.00 2.69
1673 1700 9.778741 GATCTGTGTTAATCCCTAATGTTATCA 57.221 33.333 0.00 0.00 0.00 2.15
1701 1728 8.163408 TCCCTAATGCATATACTGTTATTTGCT 58.837 33.333 0.00 0.00 41.05 3.91
1740 1767 5.404466 AGATTCTATGCCTGCTAGTCATC 57.596 43.478 0.00 0.00 0.00 2.92
1747 1774 4.826274 TGCCTGCTAGTCATCTTAACTT 57.174 40.909 0.00 0.00 0.00 2.66
1748 1775 4.759782 TGCCTGCTAGTCATCTTAACTTC 58.240 43.478 0.00 0.00 0.00 3.01
1767 1826 5.549347 ACTTCATGATTCTATGCCTGCTAG 58.451 41.667 0.00 0.00 0.00 3.42
1773 1832 4.346127 TGATTCTATGCCTGCTAGTCATGT 59.654 41.667 0.00 0.00 0.00 3.21
1774 1833 3.740631 TCTATGCCTGCTAGTCATGTG 57.259 47.619 0.00 0.00 0.00 3.21
1798 1857 5.301835 ACTGTATGATTCTATGCCTGCTT 57.698 39.130 0.00 0.00 0.00 3.91
1799 1858 5.061853 ACTGTATGATTCTATGCCTGCTTG 58.938 41.667 0.00 0.00 0.00 4.01
1800 1859 5.039920 TGTATGATTCTATGCCTGCTTGT 57.960 39.130 0.00 0.00 0.00 3.16
1801 1860 4.818005 TGTATGATTCTATGCCTGCTTGTG 59.182 41.667 0.00 0.00 0.00 3.33
1802 1861 2.019249 TGATTCTATGCCTGCTTGTGC 58.981 47.619 0.00 0.00 40.20 4.57
1803 1862 2.295885 GATTCTATGCCTGCTTGTGCT 58.704 47.619 0.00 0.00 40.48 4.40
1804 1863 2.205022 TTCTATGCCTGCTTGTGCTT 57.795 45.000 0.00 0.00 40.48 3.91
1834 1893 7.361894 TGTGACATGTGAACTGTATGATTTTG 58.638 34.615 1.15 0.00 0.00 2.44
1835 1894 7.228308 TGTGACATGTGAACTGTATGATTTTGA 59.772 33.333 1.15 0.00 0.00 2.69
1844 1903 8.791675 TGAACTGTATGATTTTGATTTGCACTA 58.208 29.630 0.00 0.00 0.00 2.74
1869 1928 8.947055 ATGTTATGCTTTGTTTTCTCTTTGTT 57.053 26.923 0.00 0.00 0.00 2.83
1871 1930 9.862371 TGTTATGCTTTGTTTTCTCTTTGTTAA 57.138 25.926 0.00 0.00 0.00 2.01
1937 2034 8.454106 AGTCATAGTGAACTTTGAATTGTATGC 58.546 33.333 5.35 0.00 36.09 3.14
1938 2035 7.698130 GTCATAGTGAACTTTGAATTGTATGCC 59.302 37.037 5.35 0.00 36.09 4.40
1940 2037 6.403866 AGTGAACTTTGAATTGTATGCCAA 57.596 33.333 0.00 0.00 37.49 4.52
1967 2071 3.904571 TGCTTGCTTGATGACATTGAAC 58.095 40.909 0.00 0.00 0.00 3.18
1995 2099 4.897076 TGTCTGTAGGAGGTTGTTTGTAGA 59.103 41.667 0.00 0.00 0.00 2.59
2002 2106 6.038997 AGGAGGTTGTTTGTAGACATACTC 57.961 41.667 5.12 0.00 34.54 2.59
2018 2122 8.824159 AGACATACTCATAGTTAACATGATGC 57.176 34.615 16.12 10.56 32.18 3.91
2027 2131 8.882736 TCATAGTTAACATGATGCAGTAGTTTG 58.117 33.333 8.61 0.00 0.00 2.93
2038 2143 6.265196 TGATGCAGTAGTTTGTCTTTGGAATT 59.735 34.615 0.00 0.00 0.00 2.17
2052 2157 5.250774 TCTTTGGAATTCCTAGCAGGTACTT 59.749 40.000 24.73 0.00 36.53 2.24
2053 2158 5.514500 TTGGAATTCCTAGCAGGTACTTT 57.486 39.130 24.73 0.00 36.53 2.66
2108 2213 3.236047 TGACTAGTTTAGTGCCACCTCA 58.764 45.455 0.00 0.00 39.59 3.86
2121 2226 6.245408 AGTGCCACCTCATGAGTTAAATAAA 58.755 36.000 21.11 0.00 0.00 1.40
2122 2227 6.151144 AGTGCCACCTCATGAGTTAAATAAAC 59.849 38.462 21.11 8.89 38.46 2.01
2195 2300 8.954350 GTATTGATATCCATTTGCATCTAAGCT 58.046 33.333 0.00 0.00 34.99 3.74
2199 2304 5.769484 ATCCATTTGCATCTAAGCTGAAG 57.231 39.130 0.00 0.00 34.99 3.02
2202 2307 4.397103 CCATTTGCATCTAAGCTGAAGTGA 59.603 41.667 0.00 0.00 34.99 3.41
2203 2308 5.106038 CCATTTGCATCTAAGCTGAAGTGAA 60.106 40.000 0.00 0.00 34.99 3.18
2233 2338 8.469309 TGTTCTTTGAGAAATCTTCCTTTGAT 57.531 30.769 0.00 0.00 35.75 2.57
2237 2342 4.665451 TGAGAAATCTTCCTTTGATGCCA 58.335 39.130 0.00 0.00 0.00 4.92
2245 2350 4.471025 TCTTCCTTTGATGCCATCTGTCTA 59.529 41.667 6.21 0.00 0.00 2.59
2246 2351 4.142609 TCCTTTGATGCCATCTGTCTAC 57.857 45.455 6.21 0.00 0.00 2.59
2249 2354 4.574013 CCTTTGATGCCATCTGTCTACTTC 59.426 45.833 6.21 0.00 0.00 3.01
2263 2368 7.997482 TCTGTCTACTTCGTATTTGCTAGAAT 58.003 34.615 0.00 0.00 0.00 2.40
2264 2369 7.915923 TCTGTCTACTTCGTATTTGCTAGAATG 59.084 37.037 0.00 0.00 0.00 2.67
2268 2373 5.978814 ACTTCGTATTTGCTAGAATGAGGT 58.021 37.500 0.00 0.00 0.00 3.85
2270 2375 6.879458 ACTTCGTATTTGCTAGAATGAGGTTT 59.121 34.615 0.00 0.00 0.00 3.27
2271 2376 6.662414 TCGTATTTGCTAGAATGAGGTTTG 57.338 37.500 0.00 0.00 0.00 2.93
2273 2378 6.653320 TCGTATTTGCTAGAATGAGGTTTGTT 59.347 34.615 0.00 0.00 0.00 2.83
2280 2385 8.458573 TGCTAGAATGAGGTTTGTTTTCTTTA 57.541 30.769 0.00 0.00 0.00 1.85
2289 2394 6.953101 AGGTTTGTTTTCTTTATGGGTGTTT 58.047 32.000 0.00 0.00 0.00 2.83
2294 2400 9.454859 TTTGTTTTCTTTATGGGTGTTTGATTT 57.545 25.926 0.00 0.00 0.00 2.17
2348 2456 2.989840 CTGTTCTACCTGTCGAGCTTTG 59.010 50.000 0.00 0.00 0.00 2.77
2352 2460 4.371855 TCTACCTGTCGAGCTTTGTATG 57.628 45.455 0.00 0.00 0.00 2.39
2356 2464 3.449018 ACCTGTCGAGCTTTGTATGATCT 59.551 43.478 0.00 0.00 0.00 2.75
2357 2465 4.645136 ACCTGTCGAGCTTTGTATGATCTA 59.355 41.667 0.00 0.00 0.00 1.98
2368 2476 8.616076 AGCTTTGTATGATCTAGCATTTGTTAC 58.384 33.333 0.00 0.00 34.37 2.50
2384 2492 7.530010 CATTTGTTACTGTATTTCCCAGAGTG 58.470 38.462 0.00 0.00 34.04 3.51
2391 2499 4.199310 TGTATTTCCCAGAGTGCATTAGC 58.801 43.478 0.00 0.00 42.57 3.09
2418 2526 8.725148 ACAAGATTATGTTTCTGCTAGTTTCAG 58.275 33.333 0.00 0.00 0.00 3.02
2419 2527 8.939929 CAAGATTATGTTTCTGCTAGTTTCAGA 58.060 33.333 0.00 0.00 38.67 3.27
2420 2528 9.507329 AAGATTATGTTTCTGCTAGTTTCAGAA 57.493 29.630 7.07 7.07 45.62 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.547141 TCCTCATGACATGTCAGTTTCTTTTT 59.453 34.615 30.63 10.52 43.61 1.94
4 5 6.064060 TCCTCATGACATGTCAGTTTCTTTT 58.936 36.000 30.63 11.23 43.61 2.27
32 36 0.033601 AAAGTGGTTGGCTGGTGACA 60.034 50.000 0.00 0.00 39.59 3.58
40 44 2.024414 AGTTGTGAGAAAGTGGTTGGC 58.976 47.619 0.00 0.00 0.00 4.52
98 102 3.958704 TGTTAACTGGTGAATGTTTGCG 58.041 40.909 7.22 0.00 0.00 4.85
134 138 5.985530 TGTGATCGCATAGAACAGGAAATAG 59.014 40.000 4.45 0.00 32.08 1.73
135 139 5.912892 TGTGATCGCATAGAACAGGAAATA 58.087 37.500 4.45 0.00 32.08 1.40
136 140 4.769688 TGTGATCGCATAGAACAGGAAAT 58.230 39.130 4.45 0.00 32.08 2.17
137 141 4.200838 TGTGATCGCATAGAACAGGAAA 57.799 40.909 4.45 0.00 32.08 3.13
150 154 2.549329 TGTGATGGCATATTGTGATCGC 59.451 45.455 0.00 0.00 0.00 4.58
189 193 3.694566 TCGCAGAACAGCTAGTCTATTGA 59.305 43.478 0.00 0.00 0.00 2.57
193 197 3.694566 TGATTCGCAGAACAGCTAGTCTA 59.305 43.478 0.00 0.00 45.90 2.59
194 198 2.493675 TGATTCGCAGAACAGCTAGTCT 59.506 45.455 0.00 0.00 45.90 3.24
201 205 1.136252 CCACGTTGATTCGCAGAACAG 60.136 52.381 0.00 0.00 45.90 3.16
202 206 0.865111 CCACGTTGATTCGCAGAACA 59.135 50.000 0.00 0.00 45.90 3.18
203 207 0.865769 ACCACGTTGATTCGCAGAAC 59.134 50.000 0.00 0.00 45.90 3.01
204 208 1.262950 CAACCACGTTGATTCGCAGAA 59.737 47.619 0.00 0.00 45.28 3.02
205 209 0.865111 CAACCACGTTGATTCGCAGA 59.135 50.000 0.00 0.00 45.28 4.26
206 210 0.865111 TCAACCACGTTGATTCGCAG 59.135 50.000 3.14 0.00 45.88 5.18
207 211 2.993539 TCAACCACGTTGATTCGCA 58.006 47.368 3.14 0.00 45.88 5.10
214 218 2.289547 CCTAACCAACTCAACCACGTTG 59.710 50.000 0.00 0.00 43.99 4.10
215 219 2.092807 ACCTAACCAACTCAACCACGTT 60.093 45.455 0.00 0.00 0.00 3.99
216 220 1.487558 ACCTAACCAACTCAACCACGT 59.512 47.619 0.00 0.00 0.00 4.49
217 221 1.871039 CACCTAACCAACTCAACCACG 59.129 52.381 0.00 0.00 0.00 4.94
218 222 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
219 223 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
220 224 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
221 225 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
222 226 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
223 227 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
224 228 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
225 229 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
226 230 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
227 231 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
228 232 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
229 233 3.370209 GGAATACCACTGTCCACCTAACC 60.370 52.174 0.00 0.00 35.97 2.85
230 234 3.370209 GGGAATACCACTGTCCACCTAAC 60.370 52.174 0.00 0.00 39.85 2.34
231 235 2.841881 GGGAATACCACTGTCCACCTAA 59.158 50.000 0.00 0.00 39.85 2.69
232 236 2.225675 TGGGAATACCACTGTCCACCTA 60.226 50.000 0.00 0.00 46.80 3.08
233 237 1.286248 GGGAATACCACTGTCCACCT 58.714 55.000 0.00 0.00 39.85 4.00
234 238 0.988832 TGGGAATACCACTGTCCACC 59.011 55.000 0.00 0.00 46.80 4.61
244 248 1.850345 TCCTGATGGGTTGGGAATACC 59.150 52.381 0.00 0.00 36.63 2.73
245 249 3.884037 ATCCTGATGGGTTGGGAATAC 57.116 47.619 0.00 0.00 36.25 1.89
246 250 3.790976 TGAATCCTGATGGGTTGGGAATA 59.209 43.478 0.00 0.00 36.67 1.75
247 251 2.586838 TGAATCCTGATGGGTTGGGAAT 59.413 45.455 0.00 0.00 36.67 3.01
248 252 1.999295 TGAATCCTGATGGGTTGGGAA 59.001 47.619 0.00 0.00 36.67 3.97
249 253 1.679981 TGAATCCTGATGGGTTGGGA 58.320 50.000 0.00 0.00 36.67 4.37
250 254 2.530460 TTGAATCCTGATGGGTTGGG 57.470 50.000 0.00 0.00 36.67 4.12
251 255 4.660789 GATTTGAATCCTGATGGGTTGG 57.339 45.455 0.00 0.00 36.67 3.77
262 266 5.815064 ATGCGAGCATCAGGATTTGAATCC 61.815 45.833 13.68 13.68 42.94 3.01
263 267 2.615447 TGCGAGCATCAGGATTTGAATC 59.385 45.455 0.00 0.00 39.77 2.52
264 268 2.646930 TGCGAGCATCAGGATTTGAAT 58.353 42.857 0.00 0.00 39.77 2.57
265 269 2.112380 TGCGAGCATCAGGATTTGAA 57.888 45.000 0.00 0.00 39.77 2.69
266 270 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
267 271 4.761235 ATAATGCGAGCATCAGGATTTG 57.239 40.909 11.26 0.00 35.31 2.32
268 272 4.217118 GGAATAATGCGAGCATCAGGATTT 59.783 41.667 11.26 0.00 35.31 2.17
269 273 3.755378 GGAATAATGCGAGCATCAGGATT 59.245 43.478 11.26 8.63 35.31 3.01
270 274 3.008813 AGGAATAATGCGAGCATCAGGAT 59.991 43.478 11.26 0.00 35.31 3.24
271 275 2.369860 AGGAATAATGCGAGCATCAGGA 59.630 45.455 11.26 0.00 35.31 3.86
272 276 2.483106 CAGGAATAATGCGAGCATCAGG 59.517 50.000 11.26 0.00 35.31 3.86
273 277 2.483106 CCAGGAATAATGCGAGCATCAG 59.517 50.000 11.26 0.00 35.31 2.90
274 278 2.104622 TCCAGGAATAATGCGAGCATCA 59.895 45.455 11.26 0.00 35.31 3.07
275 279 2.771089 TCCAGGAATAATGCGAGCATC 58.229 47.619 11.26 0.00 35.31 3.91
276 280 2.936919 TCCAGGAATAATGCGAGCAT 57.063 45.000 4.52 4.52 38.46 3.79
277 281 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
278 282 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
279 283 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
280 284 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
290 294 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
291 295 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
292 296 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
293 297 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
294 298 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
295 299 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
296 300 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
297 301 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
298 302 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
299 303 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
300 304 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
301 305 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
302 306 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
303 307 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
304 308 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
315 319 0.644331 CTCTCACTGAAAGCGCATCG 59.356 55.000 11.47 6.82 37.60 3.84
316 320 2.001812 TCTCTCACTGAAAGCGCATC 57.998 50.000 11.47 8.39 37.60 3.91
317 321 2.028658 TCTTCTCTCACTGAAAGCGCAT 60.029 45.455 11.47 0.00 37.60 4.73
318 322 1.341209 TCTTCTCTCACTGAAAGCGCA 59.659 47.619 11.47 0.00 37.60 6.09
319 323 1.724082 GTCTTCTCTCACTGAAAGCGC 59.276 52.381 0.00 0.00 37.60 5.92
320 324 1.982223 CGTCTTCTCTCACTGAAAGCG 59.018 52.381 0.00 0.00 37.60 4.68
321 325 3.019933 ACGTCTTCTCTCACTGAAAGC 57.980 47.619 0.00 0.00 37.60 3.51
322 326 3.984633 GGAACGTCTTCTCTCACTGAAAG 59.015 47.826 0.00 0.00 42.29 2.62
323 327 3.243771 GGGAACGTCTTCTCTCACTGAAA 60.244 47.826 0.00 0.00 0.00 2.69
324 328 2.296471 GGGAACGTCTTCTCTCACTGAA 59.704 50.000 0.00 0.00 0.00 3.02
325 329 1.887198 GGGAACGTCTTCTCTCACTGA 59.113 52.381 0.00 0.00 0.00 3.41
326 330 2.355717 GGGAACGTCTTCTCTCACTG 57.644 55.000 0.00 0.00 0.00 3.66
340 344 1.731969 CCTTGTCGTCGACGGGAAC 60.732 63.158 35.05 26.09 40.29 3.62
341 345 2.646719 CCTTGTCGTCGACGGGAA 59.353 61.111 35.05 25.26 40.29 3.97
342 346 4.047059 GCCTTGTCGTCGACGGGA 62.047 66.667 35.05 20.33 40.29 5.14
346 350 3.332493 TAGGCGCCTTGTCGTCGAC 62.332 63.158 37.74 18.51 39.34 4.20
347 351 3.057548 TAGGCGCCTTGTCGTCGA 61.058 61.111 37.74 11.48 39.34 4.20
348 352 2.879462 GTAGGCGCCTTGTCGTCG 60.879 66.667 37.74 0.00 39.34 5.12
349 353 2.609183 ATCGTAGGCGCCTTGTCGTC 62.609 60.000 37.74 16.43 38.14 4.20
350 354 2.707849 ATCGTAGGCGCCTTGTCGT 61.708 57.895 37.74 21.42 38.14 4.34
351 355 2.104331 ATCGTAGGCGCCTTGTCG 59.896 61.111 37.74 32.27 38.14 4.35
352 356 1.141019 TCATCGTAGGCGCCTTGTC 59.859 57.895 37.74 23.18 38.14 3.18
353 357 1.153628 GTCATCGTAGGCGCCTTGT 60.154 57.895 37.74 14.17 38.14 3.16
354 358 0.460284 AAGTCATCGTAGGCGCCTTG 60.460 55.000 37.74 26.69 38.14 3.61
355 359 0.179108 GAAGTCATCGTAGGCGCCTT 60.179 55.000 37.74 19.11 38.14 4.35
356 360 1.437986 GAAGTCATCGTAGGCGCCT 59.562 57.895 34.85 34.85 38.14 5.52
357 361 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
358 362 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
365 369 8.561932 TCATCTTAAGATTTACGAAGTCATCG 57.438 34.615 15.49 0.00 44.39 3.84
372 376 9.406828 CCGACATATCATCTTAAGATTTACGAA 57.593 33.333 15.49 0.00 31.21 3.85
373 377 7.541091 GCCGACATATCATCTTAAGATTTACGA 59.459 37.037 15.49 10.07 31.21 3.43
374 378 7.542477 AGCCGACATATCATCTTAAGATTTACG 59.458 37.037 15.49 12.88 31.21 3.18
375 379 8.764524 AGCCGACATATCATCTTAAGATTTAC 57.235 34.615 15.49 3.16 31.21 2.01
376 380 8.585018 TGAGCCGACATATCATCTTAAGATTTA 58.415 33.333 15.49 10.60 31.21 1.40
377 381 7.445121 TGAGCCGACATATCATCTTAAGATTT 58.555 34.615 15.49 8.78 31.21 2.17
378 382 6.997655 TGAGCCGACATATCATCTTAAGATT 58.002 36.000 15.49 5.12 31.21 2.40
379 383 6.210385 ACTGAGCCGACATATCATCTTAAGAT 59.790 38.462 12.37 12.37 34.56 2.40
380 384 5.536538 ACTGAGCCGACATATCATCTTAAGA 59.463 40.000 7.82 7.82 0.00 2.10
381 385 5.777802 ACTGAGCCGACATATCATCTTAAG 58.222 41.667 0.00 0.00 0.00 1.85
382 386 5.536538 AGACTGAGCCGACATATCATCTTAA 59.463 40.000 0.00 0.00 0.00 1.85
383 387 5.073428 AGACTGAGCCGACATATCATCTTA 58.927 41.667 0.00 0.00 0.00 2.10
384 388 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
385 389 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
386 390 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
387 391 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
388 392 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
389 393 2.881513 TGAGAGACTGAGCCGACATATC 59.118 50.000 0.00 0.00 0.00 1.63
390 394 2.884012 CTGAGAGACTGAGCCGACATAT 59.116 50.000 0.00 0.00 0.00 1.78
391 395 2.092914 TCTGAGAGACTGAGCCGACATA 60.093 50.000 0.00 0.00 0.00 2.29
392 396 1.102154 CTGAGAGACTGAGCCGACAT 58.898 55.000 0.00 0.00 0.00 3.06
393 397 0.036875 TCTGAGAGACTGAGCCGACA 59.963 55.000 0.00 0.00 0.00 4.35
394 398 0.732571 CTCTGAGAGACTGAGCCGAC 59.267 60.000 2.60 0.00 37.65 4.79
395 399 0.615850 TCTCTGAGAGACTGAGCCGA 59.384 55.000 8.34 0.00 41.99 5.54
396 400 1.334556 CATCTCTGAGAGACTGAGCCG 59.665 57.143 15.39 0.00 41.76 5.52
397 401 1.067516 GCATCTCTGAGAGACTGAGCC 59.932 57.143 15.39 0.00 41.76 4.70
398 402 2.026641 AGCATCTCTGAGAGACTGAGC 58.973 52.381 15.39 15.59 41.76 4.26
399 403 3.281158 TGAGCATCTCTGAGAGACTGAG 58.719 50.000 15.39 6.51 41.76 3.35
400 404 3.362870 TGAGCATCTCTGAGAGACTGA 57.637 47.619 15.39 0.00 41.76 3.41
401 405 5.065235 TCTATGAGCATCTCTGAGAGACTG 58.935 45.833 15.39 14.42 41.76 3.51
402 406 5.308976 TCTATGAGCATCTCTGAGAGACT 57.691 43.478 15.39 8.36 41.76 3.24
403 407 4.456911 CCTCTATGAGCATCTCTGAGAGAC 59.543 50.000 15.39 2.95 41.76 3.36
404 408 4.104579 ACCTCTATGAGCATCTCTGAGAGA 59.895 45.833 15.42 15.42 43.20 3.10
405 409 4.401022 ACCTCTATGAGCATCTCTGAGAG 58.599 47.826 13.50 2.28 38.52 3.20
406 410 4.451891 ACCTCTATGAGCATCTCTGAGA 57.548 45.455 10.23 10.23 34.92 3.27
407 411 5.559770 TCTACCTCTATGAGCATCTCTGAG 58.440 45.833 0.00 0.00 34.92 3.35
408 412 5.574970 TCTACCTCTATGAGCATCTCTGA 57.425 43.478 0.00 0.00 34.92 3.27
409 413 6.839124 ATTCTACCTCTATGAGCATCTCTG 57.161 41.667 0.00 0.00 34.92 3.35
410 414 8.115384 ACATATTCTACCTCTATGAGCATCTCT 58.885 37.037 0.00 0.00 34.92 3.10
411 415 8.190122 CACATATTCTACCTCTATGAGCATCTC 58.810 40.741 0.00 0.00 34.92 2.75
412 416 7.673504 ACACATATTCTACCTCTATGAGCATCT 59.326 37.037 0.00 0.00 34.92 2.90
413 417 7.758980 CACACATATTCTACCTCTATGAGCATC 59.241 40.741 0.00 0.00 0.00 3.91
414 418 7.609960 CACACATATTCTACCTCTATGAGCAT 58.390 38.462 0.00 0.00 0.00 3.79
415 419 6.517362 GCACACATATTCTACCTCTATGAGCA 60.517 42.308 0.00 0.00 0.00 4.26
416 420 5.866633 GCACACATATTCTACCTCTATGAGC 59.133 44.000 0.00 0.00 0.00 4.26
417 421 6.089476 CGCACACATATTCTACCTCTATGAG 58.911 44.000 0.00 0.00 0.00 2.90
418 422 5.564848 GCGCACACATATTCTACCTCTATGA 60.565 44.000 0.30 0.00 0.00 2.15
419 423 4.623167 GCGCACACATATTCTACCTCTATG 59.377 45.833 0.30 0.00 0.00 2.23
420 424 4.616143 CGCGCACACATATTCTACCTCTAT 60.616 45.833 8.75 0.00 0.00 1.98
421 425 3.304458 CGCGCACACATATTCTACCTCTA 60.304 47.826 8.75 0.00 0.00 2.43
422 426 2.543861 CGCGCACACATATTCTACCTCT 60.544 50.000 8.75 0.00 0.00 3.69
423 427 1.787155 CGCGCACACATATTCTACCTC 59.213 52.381 8.75 0.00 0.00 3.85
424 428 1.136305 ACGCGCACACATATTCTACCT 59.864 47.619 5.73 0.00 0.00 3.08
425 429 1.567504 ACGCGCACACATATTCTACC 58.432 50.000 5.73 0.00 0.00 3.18
426 430 3.651562 AAACGCGCACACATATTCTAC 57.348 42.857 5.73 0.00 0.00 2.59
427 431 7.466193 TTTATAAACGCGCACACATATTCTA 57.534 32.000 5.73 0.00 0.00 2.10
428 432 5.977171 TTATAAACGCGCACACATATTCT 57.023 34.783 5.73 0.00 0.00 2.40
429 433 6.685403 ACTTTTATAAACGCGCACACATATTC 59.315 34.615 5.73 0.00 0.00 1.75
430 434 6.467682 CACTTTTATAAACGCGCACACATATT 59.532 34.615 5.73 0.00 0.00 1.28
431 435 5.963004 CACTTTTATAAACGCGCACACATAT 59.037 36.000 5.73 0.82 0.00 1.78
432 436 5.120363 TCACTTTTATAAACGCGCACACATA 59.880 36.000 5.73 0.00 0.00 2.29
433 437 4.083749 TCACTTTTATAAACGCGCACACAT 60.084 37.500 5.73 0.00 0.00 3.21
434 438 3.247886 TCACTTTTATAAACGCGCACACA 59.752 39.130 5.73 0.00 0.00 3.72
435 439 3.801293 TCACTTTTATAAACGCGCACAC 58.199 40.909 5.73 0.00 0.00 3.82
436 440 3.495377 ACTCACTTTTATAAACGCGCACA 59.505 39.130 5.73 0.00 0.00 4.57
437 441 3.838550 CACTCACTTTTATAAACGCGCAC 59.161 43.478 5.73 0.00 0.00 5.34
438 442 3.495377 ACACTCACTTTTATAAACGCGCA 59.505 39.130 5.73 0.00 0.00 6.09
439 443 4.061570 ACACTCACTTTTATAAACGCGC 57.938 40.909 5.73 0.00 0.00 6.86
440 444 5.671140 GCATACACTCACTTTTATAAACGCG 59.329 40.000 3.53 3.53 0.00 6.01
441 445 5.671140 CGCATACACTCACTTTTATAAACGC 59.329 40.000 0.00 0.00 0.00 4.84
442 446 5.671140 GCGCATACACTCACTTTTATAAACG 59.329 40.000 0.30 0.00 0.00 3.60
443 447 6.539324 TGCGCATACACTCACTTTTATAAAC 58.461 36.000 5.66 0.00 0.00 2.01
444 448 6.729391 TGCGCATACACTCACTTTTATAAA 57.271 33.333 5.66 0.00 0.00 1.40
445 449 6.315144 ACATGCGCATACACTCACTTTTATAA 59.685 34.615 24.84 0.00 0.00 0.98
446 450 5.815222 ACATGCGCATACACTCACTTTTATA 59.185 36.000 24.84 0.00 0.00 0.98
447 451 4.635765 ACATGCGCATACACTCACTTTTAT 59.364 37.500 24.84 0.00 0.00 1.40
448 452 4.000325 ACATGCGCATACACTCACTTTTA 59.000 39.130 24.84 0.00 0.00 1.52
449 453 2.813754 ACATGCGCATACACTCACTTTT 59.186 40.909 24.84 0.00 0.00 2.27
450 454 2.426522 ACATGCGCATACACTCACTTT 58.573 42.857 24.84 0.00 0.00 2.66
451 455 2.099141 ACATGCGCATACACTCACTT 57.901 45.000 24.84 0.00 0.00 3.16
452 456 2.959507 TACATGCGCATACACTCACT 57.040 45.000 24.84 0.00 0.00 3.41
453 457 4.923281 TCATATACATGCGCATACACTCAC 59.077 41.667 24.84 0.00 31.73 3.51
454 458 5.132897 TCATATACATGCGCATACACTCA 57.867 39.130 24.84 6.80 31.73 3.41
455 459 5.443301 CGTTCATATACATGCGCATACACTC 60.443 44.000 24.84 6.75 31.73 3.51
456 460 4.385748 CGTTCATATACATGCGCATACACT 59.614 41.667 24.84 10.63 31.73 3.55
457 461 4.628081 CGTTCATATACATGCGCATACAC 58.372 43.478 24.84 9.52 31.73 2.90
458 462 3.122780 GCGTTCATATACATGCGCATACA 59.877 43.478 24.84 14.18 40.90 2.29
459 463 3.367932 AGCGTTCATATACATGCGCATAC 59.632 43.478 24.84 13.89 42.54 2.39
460 464 3.584834 AGCGTTCATATACATGCGCATA 58.415 40.909 24.84 9.30 42.54 3.14
461 465 2.416747 AGCGTTCATATACATGCGCAT 58.583 42.857 19.28 19.28 42.54 4.73
462 466 1.864565 AGCGTTCATATACATGCGCA 58.135 45.000 14.96 14.96 42.54 6.09
463 467 2.032894 ACAAGCGTTCATATACATGCGC 60.033 45.455 0.00 0.00 41.28 6.09
464 468 3.001228 ACACAAGCGTTCATATACATGCG 59.999 43.478 0.00 0.00 31.73 4.73
465 469 4.271049 AGACACAAGCGTTCATATACATGC 59.729 41.667 0.00 0.00 31.73 4.06
466 470 5.291858 ACAGACACAAGCGTTCATATACATG 59.708 40.000 0.00 0.00 0.00 3.21
467 471 5.419542 ACAGACACAAGCGTTCATATACAT 58.580 37.500 0.00 0.00 0.00 2.29
468 472 4.816392 ACAGACACAAGCGTTCATATACA 58.184 39.130 0.00 0.00 0.00 2.29
469 473 6.020599 CACTACAGACACAAGCGTTCATATAC 60.021 42.308 0.00 0.00 0.00 1.47
470 474 6.033966 CACTACAGACACAAGCGTTCATATA 58.966 40.000 0.00 0.00 0.00 0.86
471 475 4.864806 CACTACAGACACAAGCGTTCATAT 59.135 41.667 0.00 0.00 0.00 1.78
472 476 4.022676 TCACTACAGACACAAGCGTTCATA 60.023 41.667 0.00 0.00 0.00 2.15
473 477 3.059884 CACTACAGACACAAGCGTTCAT 58.940 45.455 0.00 0.00 0.00 2.57
474 478 2.100087 TCACTACAGACACAAGCGTTCA 59.900 45.455 0.00 0.00 0.00 3.18
475 479 2.739292 TCACTACAGACACAAGCGTTC 58.261 47.619 0.00 0.00 0.00 3.95
476 480 2.882927 TCACTACAGACACAAGCGTT 57.117 45.000 0.00 0.00 0.00 4.84
477 481 2.677199 CATCACTACAGACACAAGCGT 58.323 47.619 0.00 0.00 0.00 5.07
478 482 1.391485 GCATCACTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
479 483 2.693069 AGCATCACTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
480 484 6.785488 TTTTAGCATCACTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
502 506 4.455877 CGGAAGAACAGCTAGTCCATTTTT 59.544 41.667 0.00 0.00 0.00 1.94
503 507 4.003648 CGGAAGAACAGCTAGTCCATTTT 58.996 43.478 0.00 0.00 0.00 1.82
504 508 3.008049 ACGGAAGAACAGCTAGTCCATTT 59.992 43.478 0.00 0.00 0.00 2.32
505 509 2.567615 ACGGAAGAACAGCTAGTCCATT 59.432 45.455 0.00 0.00 0.00 3.16
506 510 2.166664 GACGGAAGAACAGCTAGTCCAT 59.833 50.000 0.00 0.00 0.00 3.41
507 511 1.544691 GACGGAAGAACAGCTAGTCCA 59.455 52.381 0.00 0.00 0.00 4.02
508 512 1.467713 CGACGGAAGAACAGCTAGTCC 60.468 57.143 0.00 0.00 0.00 3.85
509 513 1.199558 ACGACGGAAGAACAGCTAGTC 59.800 52.381 0.00 0.00 0.00 2.59
510 514 1.068472 CACGACGGAAGAACAGCTAGT 60.068 52.381 0.00 0.00 0.00 2.57
511 515 1.199327 TCACGACGGAAGAACAGCTAG 59.801 52.381 0.00 0.00 0.00 3.42
512 516 1.068748 GTCACGACGGAAGAACAGCTA 60.069 52.381 0.00 0.00 0.00 3.32
513 517 0.318784 GTCACGACGGAAGAACAGCT 60.319 55.000 0.00 0.00 0.00 4.24
514 518 0.596600 TGTCACGACGGAAGAACAGC 60.597 55.000 0.00 0.00 0.00 4.40
557 561 5.606335 GAAAGTTTTCTTGCGTTTGAGTC 57.394 39.130 0.00 0.00 40.37 3.36
590 594 2.846193 TGCTCGCCTTAAAAAGACAGT 58.154 42.857 0.00 0.00 0.00 3.55
591 595 3.555518 GTTGCTCGCCTTAAAAAGACAG 58.444 45.455 0.00 0.00 0.00 3.51
595 605 2.412847 CCTCGTTGCTCGCCTTAAAAAG 60.413 50.000 0.00 0.00 39.67 2.27
629 640 1.405526 GCATTGTCTCGTTGCTCCCTA 60.406 52.381 0.00 0.00 33.61 3.53
649 661 5.255596 CAATTTATAGCGAGACGTGTTTGG 58.744 41.667 0.00 0.00 0.00 3.28
650 662 5.255596 CCAATTTATAGCGAGACGTGTTTG 58.744 41.667 0.00 0.00 0.00 2.93
651 663 4.331717 CCCAATTTATAGCGAGACGTGTTT 59.668 41.667 0.00 0.00 0.00 2.83
697 720 2.187946 CTGGACTGATGGCCCGTC 59.812 66.667 0.00 0.00 0.00 4.79
708 731 2.639839 ACTTTGTGTGATAGGCTGGACT 59.360 45.455 0.00 0.00 0.00 3.85
730 753 1.740025 CGGTTGAGGCTTCATCTTTCC 59.260 52.381 0.00 0.00 32.27 3.13
771 794 2.598985 CGAGAGGAGGCGGGCTAT 60.599 66.667 3.20 0.00 0.00 2.97
828 851 1.467432 GGGATTGGGTGGTTTGGGA 59.533 57.895 0.00 0.00 0.00 4.37
832 855 0.042581 GATGGGGGATTGGGTGGTTT 59.957 55.000 0.00 0.00 0.00 3.27
1389 1416 1.134551 GCGGCCTTGATCTTCTTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
1639 1666 6.001460 AGGGATTAACACAGATCAAACGAAA 58.999 36.000 0.00 0.00 0.00 3.46
1661 1688 8.585471 ATGCATTAGGGATTGATAACATTAGG 57.415 34.615 0.00 0.00 0.00 2.69
1714 1741 6.695429 TGACTAGCAGGCATAGAATCTTATG 58.305 40.000 0.00 0.00 34.78 1.90
1740 1767 6.485984 AGCAGGCATAGAATCATGAAGTTAAG 59.514 38.462 0.00 0.00 0.00 1.85
1747 1774 4.590222 TGACTAGCAGGCATAGAATCATGA 59.410 41.667 0.00 0.00 0.00 3.07
1748 1775 4.891260 TGACTAGCAGGCATAGAATCATG 58.109 43.478 0.00 0.00 0.00 3.07
1767 1826 7.307632 GGCATAGAATCATACAGTTCACATGAC 60.308 40.741 0.00 0.00 31.83 3.06
1773 1832 5.059161 GCAGGCATAGAATCATACAGTTCA 58.941 41.667 0.00 0.00 0.00 3.18
1774 1833 5.303971 AGCAGGCATAGAATCATACAGTTC 58.696 41.667 0.00 0.00 0.00 3.01
1834 1893 7.816945 AACAAAGCATAACATAGTGCAAATC 57.183 32.000 0.00 0.00 43.63 2.17
1835 1894 8.606040 AAAACAAAGCATAACATAGTGCAAAT 57.394 26.923 0.00 0.00 43.63 2.32
1844 1903 8.947055 AACAAAGAGAAAACAAAGCATAACAT 57.053 26.923 0.00 0.00 0.00 2.71
1870 1929 9.823647 CCTGAAGTAATACACTATGACAAGATT 57.176 33.333 0.00 0.00 36.04 2.40
1871 1930 9.201989 TCCTGAAGTAATACACTATGACAAGAT 57.798 33.333 0.00 0.00 36.04 2.40
1937 2034 4.328983 GTCATCAAGCAAGCAAATCATTGG 59.671 41.667 0.00 0.00 37.02 3.16
1938 2035 4.926832 TGTCATCAAGCAAGCAAATCATTG 59.073 37.500 0.00 0.00 39.65 2.82
1940 2037 4.794278 TGTCATCAAGCAAGCAAATCAT 57.206 36.364 0.00 0.00 0.00 2.45
1967 2071 4.543590 ACAACCTCCTACAGACATCAAG 57.456 45.455 0.00 0.00 0.00 3.02
1980 2084 5.790593 TGAGTATGTCTACAAACAACCTCC 58.209 41.667 0.00 0.00 32.88 4.30
1995 2099 8.206867 ACTGCATCATGTTAACTATGAGTATGT 58.793 33.333 18.86 14.09 37.91 2.29
2002 2106 8.668353 ACAAACTACTGCATCATGTTAACTATG 58.332 33.333 7.22 9.02 0.00 2.23
2018 2122 6.884280 AGGAATTCCAAAGACAAACTACTG 57.116 37.500 26.22 0.00 38.89 2.74
2027 2131 3.956744 ACCTGCTAGGAATTCCAAAGAC 58.043 45.455 26.22 16.94 37.67 3.01
2038 2143 5.544948 TCCAAAACTAAAGTACCTGCTAGGA 59.455 40.000 8.91 0.00 37.67 2.94
2108 2213 9.449719 CTTACTCCAGGTGTTTATTTAACTCAT 57.550 33.333 0.00 0.00 37.64 2.90
2121 2226 3.619979 GCACAATAGCTTACTCCAGGTGT 60.620 47.826 0.00 0.00 0.00 4.16
2122 2227 2.939103 GCACAATAGCTTACTCCAGGTG 59.061 50.000 0.00 0.00 0.00 4.00
2191 2296 7.229306 TCAAAGAACATGTATTCACTTCAGCTT 59.771 33.333 0.00 0.00 0.00 3.74
2195 2300 8.675705 TTCTCAAAGAACATGTATTCACTTCA 57.324 30.769 0.00 0.00 0.00 3.02
2202 2307 9.525826 AGGAAGATTTCTCAAAGAACATGTATT 57.474 29.630 0.00 0.00 33.26 1.89
2203 2308 9.525826 AAGGAAGATTTCTCAAAGAACATGTAT 57.474 29.630 0.00 0.00 33.26 2.29
2246 2351 6.910536 AACCTCATTCTAGCAAATACGAAG 57.089 37.500 0.00 0.00 0.00 3.79
2249 2354 6.422776 ACAAACCTCATTCTAGCAAATACG 57.577 37.500 0.00 0.00 0.00 3.06
2263 2368 5.659079 ACACCCATAAAGAAAACAAACCTCA 59.341 36.000 0.00 0.00 0.00 3.86
2264 2369 6.156748 ACACCCATAAAGAAAACAAACCTC 57.843 37.500 0.00 0.00 0.00 3.85
2268 2373 9.454859 AAATCAAACACCCATAAAGAAAACAAA 57.545 25.926 0.00 0.00 0.00 2.83
2270 2375 9.454859 AAAAATCAAACACCCATAAAGAAAACA 57.545 25.926 0.00 0.00 0.00 2.83
2317 2423 0.108804 GGTAGAACAGCTGCTACGCA 60.109 55.000 15.27 0.00 38.25 5.24
2327 2433 2.989840 CAAAGCTCGACAGGTAGAACAG 59.010 50.000 0.00 0.00 0.00 3.16
2332 2438 4.371855 TCATACAAAGCTCGACAGGTAG 57.628 45.455 0.00 0.00 0.00 3.18
2335 2441 4.052159 AGATCATACAAAGCTCGACAGG 57.948 45.455 0.00 0.00 0.00 4.00
2336 2442 4.679197 GCTAGATCATACAAAGCTCGACAG 59.321 45.833 0.00 0.00 0.00 3.51
2337 2443 4.097892 TGCTAGATCATACAAAGCTCGACA 59.902 41.667 0.00 0.00 34.28 4.35
2352 2460 8.560374 GGGAAATACAGTAACAAATGCTAGATC 58.440 37.037 0.00 0.00 0.00 2.75
2356 2464 7.398829 TCTGGGAAATACAGTAACAAATGCTA 58.601 34.615 0.00 0.00 37.25 3.49
2357 2465 6.245408 TCTGGGAAATACAGTAACAAATGCT 58.755 36.000 0.00 0.00 37.25 3.79
2368 2476 4.274459 GCTAATGCACTCTGGGAAATACAG 59.726 45.833 0.00 0.00 39.41 2.74
2384 2492 6.197842 GCAGAAACATAATCTTGTGCTAATGC 59.802 38.462 0.00 0.00 38.44 3.56
2391 2499 8.506437 TGAAACTAGCAGAAACATAATCTTGTG 58.494 33.333 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.