>input_sequence_80315
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------------------------------------------------------------------ATGACGACCCGCTT
CAAGAAGAACCGGAAGAAGCGCGGCCACGTGTCCGCCGGGCACGGGCGTGTGGGCAAGCACCGCAAGCATCCCGGAGGCC
GCGGTAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGCTACTTCGGCAAGGTCGGTATG
CGCTACTTCCACAAGCTCAGCAACAGGTTCTACACCCCGACGGTCAACGTCGAGAGGCTCTGGTCCATGGTGCCGTCCGA
GAAGGCGGCCGAGGCCGGCGGCGACAAGGCCCCCGTGGTCGACGTCTCGCAGTTCGGCTACTTCAAGGTGCTCGGCAAGG
GGATGCTGCCGGAGAAGCCCATCGTCGTCAAGGCCAAGCTCATCTCCAAGATCGCAGAGAAGAAGATCAAGGCCGCCGGC
GGCGCTGTCGTGCTCGTTGCCTAG--------------------------------------------------------
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>chr2A_1_TraesCS2A01G170800
AAAAAAAAGAAACTGACATGTCAT---GAGGAAAATGTCACCAGCCAACCACTTTCTCACAACTAAAACTGCCACAAAAT
CATTTGTATATGTCACCCTCTCGCAAACATTCACCAGTTAACATGGTCAATTTTTTTCTATTTCCTGTTCTATGCGATCA
CAATATGCCATCACATCGCGAGCCCACACCCATCAATAGACTAGCTGTTCTGCGAATCAACGTGGTTGAGTTGGTTAGGT
GGACAGTGGTATTCCCAACCCATCAGGATTCAAATCCTGATGCTCGCATTATTCCTGGATTTATTTCAGGATTTCCGGCG
ATGCGCTTTCAGTGAGAGAAGACGTTCCCGTCGACGACAAGGCGCCTACGATGACTTCGTAAATCTTAAGATGATATGTC
GGCTCAGTCTCTCAGAGATGCTCATAGAGGTAGAATATGTGTGCGCGTTTATAAAAGTGAGTGTATGCGCATGTATATGA
ACGCTTGTGTCTGTAGTGATGCTAAAAAAATGGACTAGCTGTTCTTCCGTCGTGACAGCTGACTAGTGTCCCACTGCTAG
GACTCAAACGCAAGAAAACTTTCGCAACGAGACACTGT------CTTT-TTAAGGCGAGCAACGAGGCAATGTTTTTTTT
A-GGGAGCAACGAGACAATGCCAAACACGTCTCGCTATAAATTGGGCCAAAAGCCCA-----------GAGACCCAGGGG
ACGGGCCATCAGTCCAGCCTATCACACAAAGTGGAAAGATGAAGCCTCAACCGAAGCCAGGCCCAGCCCATAGATAGCCC
GCCTCCTCTCGGCCGCACCAAAGCAAAACCCTAGGAACCTACATCCAACGTCCCAAACCACCCAATCCCCCATCCGACGG
TCGACGCCCCACGCGCCAGCCTTATAAGTCCTTCCATTCCCTCCCGCAAGGGTTCCCTCCCACACACCTCCGCCTCCACC
CCACCCGCCCCGACCCCTCTCCTCCAAGGTAAGCCCGCGGCGGCGGCG----AGCGAGCGGCGGCGATGACGACCCGCTT
CAAGAAGAACCGGAAGAAGCGCGGCCACGTGTCCGCCGGGCACGGGCGTGTGGGCAAGCACCGCAAGCATCCCGGAGGCC
GCGGTAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGCTACTTCGGCAAGGTCGGTATG
CGCTACTTCCACAAGCTCAGCAACAGGTTCTACACCCCGACGGTCAACGTCGAGAGGCTCTGGTCCATGGTGCCGTCCGA
GAAGGCGGCCGAGGCCGGCGGCGACAAGGCCCCCGTGGTCGACGTCTCGCAGTTCGGCTACTTCAAGGTGCTCGGCAAGG
GGATGCTGCCGGAGAAGCCCATCGTCGTCAAGGCCAAGCTCATCTCCAAGATCGCAGAGAAGAAGATCAAGGCCGCCGGC
GGCGCTGTCGTGCTCGTTGCCTAGGGTTCTGTTCGCGACCGTGCCTTGAGATCTATTATATCTGAACTATTAGTTGTTTC
CCGTACCAGCAATTTGTGTTGAACAAGACATCGTTAGTTTGTTATCCTGGTTCCTGTGTGGTAAACCAACATCTTATGAG
AATTTTGCGCTATGTTATGCCAGTTTATATCAGACGAGTTATCCATATCTGTGCTCCTATTTATGTTTCGTTTGATCTGT
GTTAATCCCTAATGTTATCAATCCCTAATGCATATACTGTTATTTGCTATGGTGCATCACCATAAGATTCTATGCCTGCT
AGTCATCTTAACTTCATGATTCTA--------------------------------TGCCTGCTAGTCATGTGAACTGTA
TGATTCTATGCCTGCTTGTGCTTGTCATGTGACATGTGAACTGTATGATTTTGATTTGCACTATGTTATGCTTTGTTTTC
TCTTTGTTAAT----------------------------------CTTGTCATAGTGTATTACTTCAGGATTC----TAT
TTCTTGTAGTCATAGTGAACTTTGAATTGTATGCCAATGATTTGCTTGCTT-------GATGACATTGAACTTGATGTCT
GTAGGAGGTTGTTTGTAGACATACTCATAGTTAACATGATGCAGTAGTTTG-TCTTTGGAATTCCTAGCAGGTACTTTAG
TTTTGGATTGCATCTTCCTTCTAAATTTACTTGACTAGTTTAGTGCCACCTCATGAGTTAAATAAACACCTGGAGTAAGC
TATTGTGCTGTAATTGTTGTGCCATTGTGTGAAGTATTGATATCCATTTGCATCTAAGCTGAAGTGAATACATGTTCTTT
GAGAAATCTTCCTTTGATGCCATCTGTCTACTTCGTATTTGCTAGAATGAGGTTTGTTTTCTTTATGGGTGTTTGA-TTT
TTTTGCTTGCTGTGGCACCTGATGCGTAGCAGCTGTTCTACCTGTCGAGC--TTTGTATGATCTAGCATTTGTTACTGTA
TTTCCCAGAGTGCATTAGCACAAGATTATGTTTCTGCTAGTTTCAGAAAGATGTTTATAGACTAC
>chr2B_6
-----AAAGAAACTAACATATCTTCTCGAGGAAAACGTCACCACTCAACCACTTTCTCATAACTAAAACTGCCACAAAAT
CATTTGTATATGTCACCCTCTAGCAAATGTTCTCCGGTTAACAGGGTAAAAAAAA-----GTTCCTGTTCTATACGATCA
CAATATGC-----------GAGCCTACACCCACCAACGGACTA-------------------------------------
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---------------------------------------TGTTCTTCCGTCATGACAGCTGACTATT----------TAG
T-CTCAAACGCAAGAAAACTTTCGCAACGCGACCATGT------TTTTCTTAAGCCGAGCAAGGAGACAATATTTTTT--
AGGGGAGCAACGAGACAATG---AACACGTCTCGCTATAAATTGGGCCAAAAGCCCAATATACCACCCG-----------
---------------AGCCTATCACACAAAGTAGAAAGATGAAGCCTCAACCGAAGCCAGGCCCAGCCCATAG----CCC
GCCCCCTCTCGGCCGCACCAAAGCAAAACCCTAGAAGCCTACATCCAACGGCCCGAACCACCCAATCCCCCATCCGACGG
TCGACGCCCCACGCGCCAGCCTTATAAGTCCTTCCATTCCCCCCCGCAAGGGTTCCCTCCCACACACCTCCGCCTCCACC
CCATCCTCCCCGACCCCTCTCCCCCCAGGTAAGCCCGCGGCGGCGGCG----AGCGAGCGGCGGCTATGACGACCCGCCT
CAAGAAGAACCGCAAGAAGCGCGGCCACGTGTCCGCCGGGCACGGGCGTGTGGGCAAGCACCGCAAGCATCCTGGAGGCC
GCGGTAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGCTACTTCGGCAAGGTCGGTATG
CGCTACTTCCACAAGCTCAGCAACAGGTTCTACACTCCGACGATCAACGTCGAGAGGCTCTGGTCCATGGTACCGGCCGA
GAAGGCGGCAGAGGCCGGCGGTGACAAGGCCCCCGTGGTCGACGTCTCGCAGTTCGGCTACTTCAAGGTGCTCGGCAAGG
GGATGCTGCCGGAGAAGCCCATCGTCGTCAAGGCCAAGCTCATCTCCAAGATCGCCGAGAAGAAGATCAAGGCCGCCGGC
GGCGCTGTCGTGCTCGTTGCCTAGGGTTCTGTTCGCGACTGTGCCTTGAGATCTATTATATCTTTACTATTAGTTGTTTC
CCGTACCAGCAATTTGTGTTGAACAAGACATCGTTAGTTTGTTATCCTTGTTCCTGTGTGGTAAACCAACATCTTATGAG
AATTTTGCGATATGTTATGCCAGTTTATATCAGACGAGTTATCCATATCTGTGCTCCTATTTATGCTTCGTTTGATCTGT
GTTAAT------TGTTATCGATCCCTAATGCATGTACTTTTATTTGCCATGGTA----ACTATATGATTCTATGCCTGCT
AGTCATGGTAACTATATGATTCTATGCCTGGTAGTCATGGTAACTGTATGTGTCTATGCCTGCTAATCATGATAACTGTA
TGATTCTATGCCTGCTA------ATTATGTGACATGTGAACTGTATGATTTTTGTTTGCACTCTGGTATGCTTTGTTTTC
TTTGTTAATCT-------------------------------TTACTTGTCATAGTGTATTGCTTCAGGATTC----TAT
TTCTTGTAGTCATAGT----------------------GATTTGCTTGCTTAATGCTCGATGACATTGAAGTTGATGTCT
GGAAGAGGTT---TGTAGCCATACTAATGGTTAACATGAGGTAGTAGTTTTATCTTTGGAATCCCTAGCAGGTACTAAAG
TTTTGGATTGCATCTTCCTTCTAAATTTACTTGACTAGTTTAGTGTCACCTCTTGAGTTAAATAAGAACCTGGAGTAAGC
TATTGTGCTGTTATTGTTGTGCCATTGTGTGAAGTATTGGTATCCATTTGCATCTTCGCAGAAATGGCGACATGTTCTTT
GAGAAATCTTCCTCTGAAGCATTCTGTCTGTTTTGTATTTGCTAGAACAAGGATGTTATTCTTTTTGGGTGTTCGATTTG
TTTTGCTTGCTGTGGCACCT------------------------------------------------------------
-----------------------------------------------------------------
>chr2D_6
-----AAAGAAACTGACATGTCAT---GAAGAAAACGTCACCACCCAACCACTTTCTCACAACTAAAACTGCCACAAAAT
CATTTGTATATGTCACCCTCTGGCAAACATTCACCAGTTAACAGGGTCAATTTTTTTTATGTTCCTGTTCTATACGATCA
CAATATGCCATCACATCGCGAGCCCACACCCACCAACGGACTAG------------------------------------
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--------------------------------------CTGTTCTTCCGTCGTGACAGCTGACTAGTGTCCCACTGCTAG
T-CTCAAACGCAAGAAAACTTTCGCAACGAGACCATGTTCCTCTTTTTTTTAAGGCGAGCGACGAGACAATGTTTTTTTC
AGGGGAGCAGCGAGAAATGGT--AACACGTCTCGCTATAGATTAGGCCGAAAGCCCAATATAGCACCCGAGACCCAGGGC
ACGGGCCATCGGTCCAGCCTATC--------------------------ACCGAAGCCAGGCCCAGCCCATAG----CCC
TCCCCCTCTCGGCCGCACCAAAGCAAAACCCTAGGAACCTACATCCAACGGCCTGAACCACCCAATCCCCCATCCGACGG
TCGACGCCCCACGCACCAGCCTTATAAGTCCTTCCATTCCCACCCGCAAGGGTTCCCTCCCACACACCTCCGCCTCCACC
CCACCCGTCCCGACCCCTCTCCTCCAAGGTAAGCCCGCGGCGGCGGCGAGCGAGCGAGCGGCGGCGATGACGACCCGCTT
CAAGAAGAACCGGAAGAAGCGCGGCCACGTGTCCGCCGGGCACGGGCGTGTGGGCAAGCACCGCAAGCATCCCGGAGGCC
GCGGTAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGCTACTTCGGCAAGGTCGGTATG
CGCTACTTCCACAAGCTCAGCAACAGGTTCTACACACCGACGGTCAACGTCGAGAGGCTCTGGTCCATGGTTCCGTCCGA
CAAGGCGGCGGAGGCCGGCGGCGACAAGGCCCCCGTGGTCGACGTCTCGCAGTTCGGCTACTTCAAGGTGCTCGGCAAGG
GGATGCTGCCGGAGAAGCCCATCGTCGTCAAGGCCAAGCTCATCTCCAAGATCGCCGAAAAGAAGATCAAGGCCGCCGGC
GGCGCAGTCGTGCTCGTTGCCTAGGGTTCTGTTCCCGACCGTGCCCCGAGATC---TATATCTGAACTATTAGTTGTTTC
CCGTACCAGCAATTTGTGTTGAAGAAGACATCGTTAGTTTGTTATCCTGGTTCCTGTGTGGTAAACCAACATCTTATGAG
AATTTTGCGCTATGTTATGCCAGTTTATATCAGACGAGTTATCCATATCTGTGCTCCTATTTATGCTTCGTTTGATCTGT
GTTAATC------GTTATCGACCCCTAATGCATATACTGTTATTTTGCATGGTGCATCACTATAAGATTCTATGCCTGCT
AGTCATGTTAACTG------------------------------------------------------------------
TGATTCTGTGCCTGCTA------GTCATGTGAGATTTGCACTGCCAGTTTATATCAACTATTGT-TTATGCTTTGTTTGA
TCTTTGTCTTTACTGATTTACTGATACCTTATGCCTATTCTGTTACTTGTCATAGTGCATTACTACAGGATTTGTAGTAT
TTCTTGCAGTCATAGTTAACTATGAATTGTATGATAGTGATTTGCTTG-TT-------GATTACATTGAAGTTTATGTCT
GTAAGAGGTTGTTTGTAGCCATAC---TAGTTAACATGAT----------------------------------------
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>chr6B_1720
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-----------------------------------------------------------------GATTCTATGCCTGCT
AGTGATGGTAACTATATGATTCTAT--------------------------------GCCTGCTAATCACAATAAATGTA
TGA-TCTATGCCTGCTA------ATTATGTGACATGTGAACTGTATGATTTTTGTTTGCACTCTGTTATGCTTTGTT---
------AATCT-------------------------------TTACTTGTCATAGTGTATTACTTCAGGATTC----TAT
TTA-TGTAGTCATAGC----------------------GATTTGCTTGCTT-------GATGACATTGAAGTTGATGTCT
GTAAGAGGTTGTTTGTAGCCATACTAATAGTTAACATGATGTAGTAGTTTTATCTTTGGAATCCCTAGCAGGTACTAAAG
TTTTGGATTGCATATTCCTTTTAAATTTACTTTGCTAGTTTAGTGCCACCTCTTGAGTTAAATAAGAACCTGGAGTAAGC
TATTGTGCTGTAATTGTTGTGCCATTGTGTGAAGTATTGATATCCATTTGCATCTTAGCAGAAATGGCTACTTGTTTTTT
GAGAAATCTTCCTTTGCAGCCTTCTCTCTGTTTTGTATTTGCTAGAACAAGGATGTTATTCTTTTTGGGTGTTCAATTTC
TTTTGCTTGTTGTGGCACCTGACGCATAGCAGTTGTTTTATTAGTCGAGCTTTTTTTATAATCATGCATTTGTTATTGTA
TTTCCCAGAGTACATTAGTACAAGATTACGTTCCTGCTAGTTTCAATCGGATGTTTATAGACTAC
>SNPs
SSSSS------------------------------S-------S------------------------------------
---------------------S---------------------S-------------SSSS------------S------
--------------------------------S---SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
SS-------------------------------SS---------S---------------------S------------S
--------------------SSS--------------------------------------------------------S
----------S---------------------S----------------------------------------SSSS---
---S----------------------------------------------S---S-------------------------
-----------------------------------------S--------------------------------------
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-----------------------------------S-----------------------------------S--------
---------S----------------------------------------------------------------------
-------------------------------------------------------S------------------------
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-----------------------------------------------------------------S--------------
-------SSSSS-------S---------------------------S------------S-------------------
------S------SS--------------------------------------------------S-----SS-------
----------------SSSSSSS-----------------------------SS--------S-----------------
-------SSS----------------------------------------------------------------------
----------------S----S-----------SS-S---------------------------------S---------
---S--------------S------S---------------S--------S-----------S-------------SS--
----------------------------------------------------S------------SS-------------
-------------------------------------------------------S---S---S--SS------------
-----------------S---S-------SS--S-------------SS---S-SS-S------S--------S-----S
----------------------S--S------S----S--SSS------------S---S---SS----------S----
-----------S------S---------S---S------------SSSS----------------
>forward_416
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----------------------------------------------------------------------------TGTC
GGCTCAGTCTCTCAGA----------------------------------------------------------------
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>reverse_2423
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----------------------TGCGTAGCAGCTGTTCTACC--------------------------------------
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