Multiple sequence alignment - TraesCS2A01G167000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G167000 chr2A 100.000 3725 0 0 1 3725 119306176 119302452 0.000000e+00 6879
1 TraesCS2A01G167000 chr2B 95.484 2436 89 14 501 2918 168829966 168827534 0.000000e+00 3869
2 TraesCS2A01G167000 chr2B 92.244 361 12 3 3366 3725 168778639 168778294 7.180000e-137 497
3 TraesCS2A01G167000 chr2B 93.182 308 13 5 14 315 168830263 168829958 2.640000e-121 446
4 TraesCS2A01G167000 chr2B 91.971 274 18 3 2929 3200 358886323 358886052 7.550000e-102 381
5 TraesCS2A01G167000 chr2B 91.954 174 12 2 3202 3375 168827534 168827363 3.720000e-60 243
6 TraesCS2A01G167000 chr2D 95.203 2439 66 7 501 2928 118049266 118046868 0.000000e+00 3808
7 TraesCS2A01G167000 chr2D 95.048 525 23 3 3202 3725 118046871 118046349 0.000000e+00 822
8 TraesCS2A01G167000 chr2D 94.839 310 10 4 17 321 118049561 118049253 2.600000e-131 479
9 TraesCS2A01G167000 chr2D 91.398 279 19 4 2924 3201 288027621 288027347 9.770000e-101 377
10 TraesCS2A01G167000 chr4D 91.398 279 20 3 2924 3201 219235780 219236055 2.720000e-101 379
11 TraesCS2A01G167000 chr6B 92.636 258 16 2 2925 3181 399449226 399449481 5.880000e-98 368
12 TraesCS2A01G167000 chr5A 91.209 273 21 3 2925 3196 451045708 451045438 5.880000e-98 368
13 TraesCS2A01G167000 chr5A 86.626 329 34 4 1743 2061 308460454 308460126 4.580000e-94 355
14 TraesCS2A01G167000 chr5A 88.514 148 16 1 3569 3715 283308556 283308703 1.060000e-40 178
15 TraesCS2A01G167000 chr3D 91.209 273 21 3 2924 3195 224763189 224763459 5.880000e-98 368
16 TraesCS2A01G167000 chr7D 92.941 255 13 3 2930 3181 297733894 297734146 2.110000e-97 366
17 TraesCS2A01G167000 chr7D 87.755 147 18 0 3572 3718 197927151 197927005 4.950000e-39 172
18 TraesCS2A01G167000 chr5D 88.424 311 27 2 1743 2044 243092075 243092385 2.110000e-97 366
19 TraesCS2A01G167000 chr5B 87.117 326 33 3 1743 2061 255227976 255227653 9.840000e-96 361
20 TraesCS2A01G167000 chr5B 89.964 279 17 6 2924 3201 197466784 197467052 2.130000e-92 350
21 TraesCS2A01G167000 chr5B 99.468 188 0 1 316 503 144591271 144591457 1.280000e-89 340
22 TraesCS2A01G167000 chr5B 99.468 188 0 1 315 502 245829931 245830117 1.280000e-89 340
23 TraesCS2A01G167000 chr5B 99.468 188 0 1 314 501 506953734 506953920 1.280000e-89 340
24 TraesCS2A01G167000 chr5B 98.446 193 1 2 310 501 225521955 225521764 4.610000e-89 339
25 TraesCS2A01G167000 chr3B 90.545 275 22 4 2928 3201 330273550 330273279 9.840000e-96 361
26 TraesCS2A01G167000 chr3A 100.000 186 0 0 316 501 676218674 676218489 9.900000e-91 344
27 TraesCS2A01G167000 chr3A 98.947 190 0 1 316 505 686779175 686779362 4.610000e-89 339
28 TraesCS2A01G167000 chr3A 87.671 146 18 0 3571 3716 466791152 466791007 1.780000e-38 171
29 TraesCS2A01G167000 chr4A 98.947 190 1 1 312 501 514417557 514417745 4.610000e-89 339
30 TraesCS2A01G167000 chr4A 88.435 147 17 0 3569 3715 565304100 565304246 1.060000e-40 178
31 TraesCS2A01G167000 chr1B 99.465 187 0 1 315 501 591230174 591230359 4.610000e-89 339
32 TraesCS2A01G167000 chr1A 97.959 196 2 2 313 507 554528621 554528427 4.610000e-89 339
33 TraesCS2A01G167000 chr1A 86.986 146 19 0 3570 3715 385659142 385659287 8.280000e-37 165
34 TraesCS2A01G167000 chr4B 87.162 148 19 0 3569 3716 438375187 438375334 6.400000e-38 169
35 TraesCS2A01G167000 chr7B 85.806 155 21 1 3569 3722 453623437 453623283 2.980000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G167000 chr2A 119302452 119306176 3724 True 6879.000000 6879 100.00 1 3725 1 chr2A.!!$R1 3724
1 TraesCS2A01G167000 chr2B 168827363 168830263 2900 True 1519.333333 3869 93.54 14 3375 3 chr2B.!!$R3 3361
2 TraesCS2A01G167000 chr2D 118046349 118049561 3212 True 1703.000000 3808 95.03 17 3725 3 chr2D.!!$R2 3708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 435 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.0 3.79 0.00 30.80 3.13 F
491 498 0.174162 GTCGCCTTAGGGACGCTTTA 59.826 55.0 0.00 0.00 44.82 1.85 F
742 750 0.679640 TTAGAAACTGCCGGCCATGG 60.680 55.0 26.77 7.63 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 2403 1.192534 GGAAACAGAGTCTTTGTCGCG 59.807 52.381 0.0 0.0 0.0 5.87 R
2532 2556 5.023452 TCTTGTTCCTGCTTAGGTCTATCA 58.977 41.667 0.0 0.0 0.0 2.15 R
2727 2751 2.425312 ACAACAATTTCTTCACGCCACA 59.575 40.909 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.085091 CACATCAAGTCTGCCTCTGC 58.915 55.000 0.00 0.00 38.26 4.26
144 150 2.165641 ACCTTGCATTGCATCTGTCATG 59.834 45.455 12.95 0.00 38.76 3.07
207 213 1.368579 GCCCACAGCTGCAACAAAT 59.631 52.632 15.27 0.00 38.99 2.32
315 322 3.748083 TCCATCTCCTATGCTCATTTGC 58.252 45.455 0.00 0.00 0.00 3.68
316 323 3.393609 TCCATCTCCTATGCTCATTTGCT 59.606 43.478 0.00 0.00 0.00 3.91
317 324 4.594491 TCCATCTCCTATGCTCATTTGCTA 59.406 41.667 0.00 0.00 0.00 3.49
318 325 5.250082 TCCATCTCCTATGCTCATTTGCTAT 59.750 40.000 0.00 0.00 0.00 2.97
319 326 5.354513 CCATCTCCTATGCTCATTTGCTATG 59.645 44.000 0.00 0.00 0.00 2.23
320 327 5.557576 TCTCCTATGCTCATTTGCTATGT 57.442 39.130 0.00 0.00 0.00 2.29
321 328 5.933617 TCTCCTATGCTCATTTGCTATGTT 58.066 37.500 0.00 0.00 0.00 2.71
322 329 6.359804 TCTCCTATGCTCATTTGCTATGTTT 58.640 36.000 0.00 0.00 0.00 2.83
323 330 6.830324 TCTCCTATGCTCATTTGCTATGTTTT 59.170 34.615 0.00 0.00 0.00 2.43
324 331 7.340232 TCTCCTATGCTCATTTGCTATGTTTTT 59.660 33.333 0.00 0.00 0.00 1.94
325 332 8.518430 TCCTATGCTCATTTGCTATGTTTTTA 57.482 30.769 0.00 0.00 0.00 1.52
326 333 8.965819 TCCTATGCTCATTTGCTATGTTTTTAA 58.034 29.630 0.00 0.00 0.00 1.52
327 334 9.241317 CCTATGCTCATTTGCTATGTTTTTAAG 57.759 33.333 0.00 0.00 0.00 1.85
328 335 9.241317 CTATGCTCATTTGCTATGTTTTTAAGG 57.759 33.333 0.00 0.00 0.00 2.69
329 336 5.868801 TGCTCATTTGCTATGTTTTTAAGGC 59.131 36.000 0.00 0.00 0.00 4.35
330 337 5.004726 GCTCATTTGCTATGTTTTTAAGGCG 59.995 40.000 0.00 0.00 0.00 5.52
331 338 6.260870 TCATTTGCTATGTTTTTAAGGCGA 57.739 33.333 0.00 0.00 0.00 5.54
332 339 6.090129 TCATTTGCTATGTTTTTAAGGCGAC 58.910 36.000 0.00 0.00 0.00 5.19
333 340 3.733024 TGCTATGTTTTTAAGGCGACG 57.267 42.857 0.00 0.00 0.00 5.12
334 341 2.159626 TGCTATGTTTTTAAGGCGACGC 60.160 45.455 12.43 12.43 0.00 5.19
346 353 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
347 354 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
348 355 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
349 356 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
350 357 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
351 358 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
398 405 4.467084 CTAGGCGGGCGCTTTGGA 62.467 66.667 7.64 0.00 41.60 3.53
399 406 4.770874 TAGGCGGGCGCTTTGGAC 62.771 66.667 7.64 0.00 41.60 4.02
407 414 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
425 432 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
426 433 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
427 434 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
428 435 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
429 436 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
430 437 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
431 438 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
432 439 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
433 440 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
434 441 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
435 442 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
436 443 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
443 450 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
444 451 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
452 459 4.516195 GAGGGGGAGCGCTTCGAC 62.516 72.222 13.26 5.82 0.00 4.20
489 496 2.577593 GTCGCCTTAGGGACGCTT 59.422 61.111 0.00 0.00 44.82 4.68
490 497 1.079336 GTCGCCTTAGGGACGCTTT 60.079 57.895 0.00 0.00 44.82 3.51
491 498 0.174162 GTCGCCTTAGGGACGCTTTA 59.826 55.000 0.00 0.00 44.82 1.85
492 499 0.896923 TCGCCTTAGGGACGCTTTAA 59.103 50.000 0.00 0.00 34.09 1.52
493 500 1.275856 TCGCCTTAGGGACGCTTTAAA 59.724 47.619 0.00 0.00 34.09 1.52
494 501 2.078392 CGCCTTAGGGACGCTTTAAAA 58.922 47.619 0.00 0.00 33.58 1.52
495 502 2.485038 CGCCTTAGGGACGCTTTAAAAA 59.515 45.455 0.00 0.00 33.58 1.94
496 503 3.668757 CGCCTTAGGGACGCTTTAAAAAC 60.669 47.826 0.00 0.00 33.58 2.43
497 504 3.253921 GCCTTAGGGACGCTTTAAAAACA 59.746 43.478 0.00 0.00 33.58 2.83
498 505 4.082408 GCCTTAGGGACGCTTTAAAAACAT 60.082 41.667 0.00 0.00 33.58 2.71
499 506 5.124297 GCCTTAGGGACGCTTTAAAAACATA 59.876 40.000 0.00 0.00 33.58 2.29
500 507 6.677187 GCCTTAGGGACGCTTTAAAAACATAG 60.677 42.308 0.00 0.00 33.58 2.23
501 508 4.696899 AGGGACGCTTTAAAAACATAGC 57.303 40.909 0.00 0.00 0.00 2.97
502 509 4.332828 AGGGACGCTTTAAAAACATAGCT 58.667 39.130 0.00 0.00 0.00 3.32
503 510 4.395231 AGGGACGCTTTAAAAACATAGCTC 59.605 41.667 0.00 0.00 0.00 4.09
504 511 4.155280 GGGACGCTTTAAAAACATAGCTCA 59.845 41.667 0.00 0.00 0.00 4.26
505 512 5.163652 GGGACGCTTTAAAAACATAGCTCAT 60.164 40.000 0.00 0.00 0.00 2.90
506 513 6.322491 GGACGCTTTAAAAACATAGCTCATT 58.678 36.000 0.00 0.00 0.00 2.57
507 514 6.806739 GGACGCTTTAAAAACATAGCTCATTT 59.193 34.615 0.00 0.00 0.00 2.32
508 515 7.201350 GGACGCTTTAAAAACATAGCTCATTTG 60.201 37.037 0.00 0.00 0.00 2.32
595 602 8.153221 TGGGTCCATCTTAAATAGTTGTTAGA 57.847 34.615 0.00 0.00 0.00 2.10
659 666 4.380841 AGCACATTCAATTGCCATGTAG 57.619 40.909 17.77 14.18 39.75 2.74
712 719 6.823689 AGTACTTTCTGACAACAAAGTCACAT 59.176 34.615 13.13 0.54 43.18 3.21
742 750 0.679640 TTAGAAACTGCCGGCCATGG 60.680 55.000 26.77 7.63 0.00 3.66
782 790 2.427232 TTGGACGGTAGTTTGAGACG 57.573 50.000 0.00 0.00 0.00 4.18
820 828 8.352942 ACTACCAATTCATTTCTTGAGTGAAAC 58.647 33.333 0.00 0.00 38.54 2.78
851 859 3.008049 GGTTGACCCAGTTGAGTCATACT 59.992 47.826 0.00 0.00 42.32 2.12
949 957 4.727235 ACACTTCTCGGTTCGAAAAATC 57.273 40.909 0.00 0.00 34.74 2.17
997 1005 4.828925 GGCCAGCCGAGCTCTCAC 62.829 72.222 12.85 0.49 36.40 3.51
1398 1407 8.376203 CGATTCTCACATTCGAATATTGGATAC 58.624 37.037 10.97 0.06 34.92 2.24
1447 1466 5.440610 AGAGGTCTGTTTGAGTTTTGACAT 58.559 37.500 0.00 0.00 0.00 3.06
1555 1575 7.869429 ACTTTGGATTGTGAGAAATCATTCAAC 59.131 33.333 0.00 0.00 38.14 3.18
1614 1634 8.958060 TTAGGTAGCATACATTATCTCCTCTT 57.042 34.615 0.00 0.00 45.43 2.85
1637 1657 0.814010 AGTGTTGTGTTCGGGACAGC 60.814 55.000 0.00 0.00 39.39 4.40
1716 1736 9.527157 TTGAAAAATTGATCCCATTACTCAGTA 57.473 29.630 0.00 0.00 0.00 2.74
1858 1878 1.048601 TCATGGGCGAGGAGGTATTC 58.951 55.000 0.00 0.00 0.00 1.75
2087 2110 8.153221 TCTCCCACACCTTTTACAAGATAATA 57.847 34.615 0.00 0.00 30.57 0.98
2208 2231 2.238646 CACATGCCTAGGGGTAGTTTCA 59.761 50.000 11.72 0.00 34.45 2.69
2340 2363 3.146726 TATTCCCGCGGCTCTTCGG 62.147 63.158 22.85 3.88 44.89 4.30
2380 2403 3.991367 AGTGATATAAGGTAAGCCGTGC 58.009 45.455 0.00 0.00 40.50 5.34
2532 2556 0.034059 CTCGACAAACAGCAGAGGGT 59.966 55.000 0.00 0.00 0.00 4.34
2563 2587 6.213600 ACCTAAGCAGGAACAAGAAGATTCTA 59.786 38.462 0.00 0.00 45.91 2.10
2582 2606 5.592104 TCTATGAGGAAAATGTCTACGCA 57.408 39.130 0.00 0.00 0.00 5.24
2600 2624 3.569701 ACGCATGAAGGTGAAAATGAACT 59.430 39.130 0.00 0.00 0.00 3.01
2611 2635 4.580580 GTGAAAATGAACTGTCTCAAGGGT 59.419 41.667 0.00 0.00 0.00 4.34
2613 2637 4.713792 AAATGAACTGTCTCAAGGGTCT 57.286 40.909 0.00 0.00 0.00 3.85
2618 2642 2.614259 ACTGTCTCAAGGGTCTGTCAT 58.386 47.619 0.00 0.00 0.00 3.06
2726 2750 3.354467 AGAGTTCGGACGAGGAATAGTT 58.646 45.455 0.00 0.00 0.00 2.24
2727 2751 3.762823 AGAGTTCGGACGAGGAATAGTTT 59.237 43.478 0.00 0.00 0.00 2.66
2736 2760 2.695359 GAGGAATAGTTTGTGGCGTGA 58.305 47.619 0.00 0.00 0.00 4.35
2827 2852 3.003378 GGATAAAGAACTTATGCCGGCAC 59.997 47.826 35.50 18.65 33.39 5.01
2840 2865 0.249120 CCGGCACTGATTAGGTGTCA 59.751 55.000 0.00 0.00 39.00 3.58
2929 2954 9.330063 TGATTGCTAATGCTAATGTATATAGGC 57.670 33.333 0.00 0.00 40.48 3.93
2930 2955 8.682936 ATTGCTAATGCTAATGTATATAGGCC 57.317 34.615 0.00 0.00 40.48 5.19
2931 2956 6.591935 TGCTAATGCTAATGTATATAGGCCC 58.408 40.000 0.00 0.00 40.48 5.80
2932 2957 6.386927 TGCTAATGCTAATGTATATAGGCCCT 59.613 38.462 0.00 0.00 40.48 5.19
2933 2958 6.708054 GCTAATGCTAATGTATATAGGCCCTG 59.292 42.308 0.00 0.00 36.03 4.45
2934 2959 6.642733 AATGCTAATGTATATAGGCCCTGT 57.357 37.500 0.00 0.00 0.00 4.00
2935 2960 6.642733 ATGCTAATGTATATAGGCCCTGTT 57.357 37.500 0.00 0.00 0.00 3.16
2936 2961 6.448369 TGCTAATGTATATAGGCCCTGTTT 57.552 37.500 0.00 0.00 0.00 2.83
2937 2962 6.237901 TGCTAATGTATATAGGCCCTGTTTG 58.762 40.000 0.00 0.00 0.00 2.93
2938 2963 5.648092 GCTAATGTATATAGGCCCTGTTTGG 59.352 44.000 0.00 0.00 0.00 3.28
2939 2964 5.922960 AATGTATATAGGCCCTGTTTGGA 57.077 39.130 0.00 0.00 38.35 3.53
2940 2965 6.468972 AATGTATATAGGCCCTGTTTGGAT 57.531 37.500 0.00 0.00 38.35 3.41
2941 2966 7.582909 AATGTATATAGGCCCTGTTTGGATA 57.417 36.000 0.00 0.00 38.35 2.59
2942 2967 6.368779 TGTATATAGGCCCTGTTTGGATAC 57.631 41.667 0.00 0.00 38.35 2.24
2943 2968 6.088819 TGTATATAGGCCCTGTTTGGATACT 58.911 40.000 0.00 0.00 38.35 2.12
2944 2969 6.561070 TGTATATAGGCCCTGTTTGGATACTT 59.439 38.462 0.00 0.00 38.35 2.24
2945 2970 4.881157 ATAGGCCCTGTTTGGATACTTT 57.119 40.909 0.00 0.00 38.35 2.66
2946 2971 5.987019 ATAGGCCCTGTTTGGATACTTTA 57.013 39.130 0.00 0.00 38.35 1.85
2947 2972 4.668138 AGGCCCTGTTTGGATACTTTAA 57.332 40.909 0.00 0.00 38.35 1.52
2948 2973 4.341487 AGGCCCTGTTTGGATACTTTAAC 58.659 43.478 0.00 0.00 38.35 2.01
2949 2974 4.044191 AGGCCCTGTTTGGATACTTTAACT 59.956 41.667 0.00 0.00 38.35 2.24
2950 2975 4.770531 GGCCCTGTTTGGATACTTTAACTT 59.229 41.667 0.00 0.00 38.35 2.66
2951 2976 5.947566 GGCCCTGTTTGGATACTTTAACTTA 59.052 40.000 0.00 0.00 38.35 2.24
2952 2977 6.095021 GGCCCTGTTTGGATACTTTAACTTAG 59.905 42.308 0.00 0.00 38.35 2.18
2953 2978 6.404403 GCCCTGTTTGGATACTTTAACTTAGC 60.404 42.308 0.00 0.00 38.35 3.09
2954 2979 6.884836 CCCTGTTTGGATACTTTAACTTAGCT 59.115 38.462 0.00 0.00 38.35 3.32
2955 2980 8.044908 CCCTGTTTGGATACTTTAACTTAGCTA 58.955 37.037 0.00 0.00 38.35 3.32
2956 2981 9.099454 CCTGTTTGGATACTTTAACTTAGCTAG 57.901 37.037 0.00 0.00 38.35 3.42
2957 2982 9.871238 CTGTTTGGATACTTTAACTTAGCTAGA 57.129 33.333 0.00 0.00 37.61 2.43
2958 2983 9.871238 TGTTTGGATACTTTAACTTAGCTAGAG 57.129 33.333 0.00 0.00 37.61 2.43
2959 2984 9.315525 GTTTGGATACTTTAACTTAGCTAGAGG 57.684 37.037 0.00 0.00 37.61 3.69
2960 2985 8.605325 TTGGATACTTTAACTTAGCTAGAGGT 57.395 34.615 0.00 0.00 37.61 3.85
2961 2986 8.605325 TGGATACTTTAACTTAGCTAGAGGTT 57.395 34.615 0.00 11.56 37.61 3.50
2962 2987 9.705103 TGGATACTTTAACTTAGCTAGAGGTTA 57.295 33.333 0.00 10.11 37.61 2.85
2966 2991 8.882557 ACTTTAACTTAGCTAGAGGTTAGAGT 57.117 34.615 20.55 20.55 35.92 3.24
2967 2992 9.311676 ACTTTAACTTAGCTAGAGGTTAGAGTT 57.688 33.333 20.55 15.43 36.73 3.01
2969 2994 9.924650 TTTAACTTAGCTAGAGGTTAGAGTTTG 57.075 33.333 8.13 0.00 0.00 2.93
2970 2995 7.541916 AACTTAGCTAGAGGTTAGAGTTTGT 57.458 36.000 0.00 0.00 0.00 2.83
2971 2996 7.541916 ACTTAGCTAGAGGTTAGAGTTTGTT 57.458 36.000 0.00 0.00 0.00 2.83
2972 2997 7.964624 ACTTAGCTAGAGGTTAGAGTTTGTTT 58.035 34.615 0.00 0.00 0.00 2.83
2973 2998 8.089597 ACTTAGCTAGAGGTTAGAGTTTGTTTC 58.910 37.037 0.00 0.00 0.00 2.78
2974 2999 6.673839 AGCTAGAGGTTAGAGTTTGTTTCT 57.326 37.500 0.00 0.00 0.00 2.52
2975 3000 7.778185 AGCTAGAGGTTAGAGTTTGTTTCTA 57.222 36.000 0.00 0.00 0.00 2.10
2976 3001 7.832769 AGCTAGAGGTTAGAGTTTGTTTCTAG 58.167 38.462 0.00 0.00 37.19 2.43
2977 3002 6.532302 GCTAGAGGTTAGAGTTTGTTTCTAGC 59.468 42.308 12.62 12.62 46.38 3.42
2978 3003 6.673839 AGAGGTTAGAGTTTGTTTCTAGCT 57.326 37.500 0.00 0.00 31.45 3.32
2979 3004 6.693466 AGAGGTTAGAGTTTGTTTCTAGCTC 58.307 40.000 0.00 0.00 31.45 4.09
2980 3005 6.267928 AGAGGTTAGAGTTTGTTTCTAGCTCA 59.732 38.462 0.00 0.00 32.06 4.26
2981 3006 7.010339 AGGTTAGAGTTTGTTTCTAGCTCAT 57.990 36.000 0.00 0.00 31.45 2.90
2982 3007 6.876257 AGGTTAGAGTTTGTTTCTAGCTCATG 59.124 38.462 0.00 0.00 31.45 3.07
2983 3008 6.874134 GGTTAGAGTTTGTTTCTAGCTCATGA 59.126 38.462 0.00 0.00 31.45 3.07
2984 3009 7.148557 GGTTAGAGTTTGTTTCTAGCTCATGAC 60.149 40.741 0.00 0.00 31.45 3.06
2985 3010 6.107901 AGAGTTTGTTTCTAGCTCATGACT 57.892 37.500 0.00 0.00 0.00 3.41
2986 3011 7.233389 AGAGTTTGTTTCTAGCTCATGACTA 57.767 36.000 0.00 0.00 0.00 2.59
2987 3012 7.671302 AGAGTTTGTTTCTAGCTCATGACTAA 58.329 34.615 0.00 0.00 0.00 2.24
2988 3013 7.600752 AGAGTTTGTTTCTAGCTCATGACTAAC 59.399 37.037 0.00 0.00 0.00 2.34
2989 3014 6.651225 AGTTTGTTTCTAGCTCATGACTAACC 59.349 38.462 0.00 0.00 0.00 2.85
2990 3015 5.086104 TGTTTCTAGCTCATGACTAACCC 57.914 43.478 0.00 0.00 0.00 4.11
2991 3016 4.777896 TGTTTCTAGCTCATGACTAACCCT 59.222 41.667 0.00 0.00 0.00 4.34
2992 3017 5.112686 GTTTCTAGCTCATGACTAACCCTG 58.887 45.833 0.00 0.00 0.00 4.45
2993 3018 4.251103 TCTAGCTCATGACTAACCCTGA 57.749 45.455 0.00 0.00 0.00 3.86
2994 3019 4.610333 TCTAGCTCATGACTAACCCTGAA 58.390 43.478 0.00 0.00 0.00 3.02
2995 3020 3.618690 AGCTCATGACTAACCCTGAAC 57.381 47.619 0.00 0.00 0.00 3.18
2996 3021 3.177228 AGCTCATGACTAACCCTGAACT 58.823 45.455 0.00 0.00 0.00 3.01
2997 3022 4.353777 AGCTCATGACTAACCCTGAACTA 58.646 43.478 0.00 0.00 0.00 2.24
2998 3023 4.777896 AGCTCATGACTAACCCTGAACTAA 59.222 41.667 0.00 0.00 0.00 2.24
2999 3024 5.426833 AGCTCATGACTAACCCTGAACTAAT 59.573 40.000 0.00 0.00 0.00 1.73
3000 3025 6.069963 AGCTCATGACTAACCCTGAACTAATT 60.070 38.462 0.00 0.00 0.00 1.40
3001 3026 6.258947 GCTCATGACTAACCCTGAACTAATTC 59.741 42.308 0.00 0.00 35.18 2.17
3002 3027 7.496346 TCATGACTAACCCTGAACTAATTCT 57.504 36.000 0.00 0.00 35.69 2.40
3003 3028 8.603898 TCATGACTAACCCTGAACTAATTCTA 57.396 34.615 0.00 0.00 35.69 2.10
3004 3029 8.696374 TCATGACTAACCCTGAACTAATTCTAG 58.304 37.037 0.00 0.00 35.69 2.43
3005 3030 6.875076 TGACTAACCCTGAACTAATTCTAGC 58.125 40.000 0.00 0.00 35.69 3.42
3006 3031 6.127140 TGACTAACCCTGAACTAATTCTAGCC 60.127 42.308 0.00 0.00 35.69 3.93
3007 3032 5.724854 ACTAACCCTGAACTAATTCTAGCCA 59.275 40.000 0.00 0.00 35.69 4.75
3008 3033 5.514500 AACCCTGAACTAATTCTAGCCAA 57.486 39.130 0.00 0.00 35.69 4.52
3009 3034 5.514500 ACCCTGAACTAATTCTAGCCAAA 57.486 39.130 0.00 0.00 35.69 3.28
3010 3035 5.501156 ACCCTGAACTAATTCTAGCCAAAG 58.499 41.667 0.00 0.00 35.69 2.77
3011 3036 5.250774 ACCCTGAACTAATTCTAGCCAAAGA 59.749 40.000 0.00 0.00 35.69 2.52
3012 3037 5.819901 CCCTGAACTAATTCTAGCCAAAGAG 59.180 44.000 0.00 0.00 35.69 2.85
3013 3038 5.819901 CCTGAACTAATTCTAGCCAAAGAGG 59.180 44.000 0.00 0.00 36.69 3.69
3014 3039 6.374417 TGAACTAATTCTAGCCAAAGAGGT 57.626 37.500 0.00 0.00 36.27 3.85
3015 3040 6.173339 TGAACTAATTCTAGCCAAAGAGGTG 58.827 40.000 0.00 0.00 36.27 4.00
3016 3041 5.763876 ACTAATTCTAGCCAAAGAGGTGT 57.236 39.130 0.00 0.00 40.61 4.16
3017 3042 6.128138 ACTAATTCTAGCCAAAGAGGTGTT 57.872 37.500 0.00 0.00 40.61 3.32
3018 3043 6.543735 ACTAATTCTAGCCAAAGAGGTGTTT 58.456 36.000 0.00 0.00 40.61 2.83
3019 3044 5.712152 AATTCTAGCCAAAGAGGTGTTTG 57.288 39.130 0.00 0.00 40.61 2.93
3027 3052 4.928661 CAAAGAGGTGTTTGGACGATAG 57.071 45.455 0.00 0.00 36.55 2.08
3028 3053 3.611766 AAGAGGTGTTTGGACGATAGG 57.388 47.619 0.00 0.00 43.77 2.57
3029 3054 1.831736 AGAGGTGTTTGGACGATAGGG 59.168 52.381 0.00 0.00 43.77 3.53
3030 3055 1.553704 GAGGTGTTTGGACGATAGGGT 59.446 52.381 0.00 0.00 43.77 4.34
3031 3056 1.982958 AGGTGTTTGGACGATAGGGTT 59.017 47.619 0.00 0.00 43.77 4.11
3032 3057 3.175594 AGGTGTTTGGACGATAGGGTTA 58.824 45.455 0.00 0.00 43.77 2.85
3033 3058 3.197116 AGGTGTTTGGACGATAGGGTTAG 59.803 47.826 0.00 0.00 43.77 2.34
3034 3059 3.196254 GGTGTTTGGACGATAGGGTTAGA 59.804 47.826 0.00 0.00 43.77 2.10
3035 3060 4.141779 GGTGTTTGGACGATAGGGTTAGAT 60.142 45.833 0.00 0.00 43.77 1.98
3036 3061 5.425630 GTGTTTGGACGATAGGGTTAGATT 58.574 41.667 0.00 0.00 43.77 2.40
3037 3062 5.293569 GTGTTTGGACGATAGGGTTAGATTG 59.706 44.000 0.00 0.00 43.77 2.67
3038 3063 5.188163 TGTTTGGACGATAGGGTTAGATTGA 59.812 40.000 0.00 0.00 43.77 2.57
3039 3064 4.931661 TGGACGATAGGGTTAGATTGAC 57.068 45.455 0.00 0.00 43.77 3.18
3040 3065 4.283337 TGGACGATAGGGTTAGATTGACA 58.717 43.478 0.00 0.00 43.77 3.58
3041 3066 4.712829 TGGACGATAGGGTTAGATTGACAA 59.287 41.667 0.00 0.00 43.77 3.18
3042 3067 5.365605 TGGACGATAGGGTTAGATTGACAAT 59.634 40.000 0.00 0.00 43.77 2.71
3043 3068 6.551975 TGGACGATAGGGTTAGATTGACAATA 59.448 38.462 0.00 0.00 43.77 1.90
3044 3069 7.070198 TGGACGATAGGGTTAGATTGACAATAA 59.930 37.037 0.00 0.00 43.77 1.40
3045 3070 7.929785 GGACGATAGGGTTAGATTGACAATAAA 59.070 37.037 0.00 0.00 43.77 1.40
3046 3071 9.490379 GACGATAGGGTTAGATTGACAATAAAT 57.510 33.333 0.00 0.00 43.77 1.40
3047 3072 9.273016 ACGATAGGGTTAGATTGACAATAAATG 57.727 33.333 0.00 0.00 43.77 2.32
3048 3073 8.230486 CGATAGGGTTAGATTGACAATAAATGC 58.770 37.037 0.00 0.00 0.00 3.56
3049 3074 8.995027 ATAGGGTTAGATTGACAATAAATGCA 57.005 30.769 0.00 0.00 0.00 3.96
3050 3075 7.100458 AGGGTTAGATTGACAATAAATGCAC 57.900 36.000 0.00 0.00 0.00 4.57
3051 3076 6.663093 AGGGTTAGATTGACAATAAATGCACA 59.337 34.615 0.00 0.00 0.00 4.57
3052 3077 6.974622 GGGTTAGATTGACAATAAATGCACAG 59.025 38.462 0.00 0.00 0.00 3.66
3053 3078 6.974622 GGTTAGATTGACAATAAATGCACAGG 59.025 38.462 0.00 0.00 0.00 4.00
3054 3079 7.148086 GGTTAGATTGACAATAAATGCACAGGA 60.148 37.037 0.00 0.00 0.00 3.86
3055 3080 6.446781 AGATTGACAATAAATGCACAGGAG 57.553 37.500 0.00 0.00 0.00 3.69
3056 3081 6.182627 AGATTGACAATAAATGCACAGGAGA 58.817 36.000 0.00 0.00 0.00 3.71
3057 3082 6.660521 AGATTGACAATAAATGCACAGGAGAA 59.339 34.615 0.00 0.00 0.00 2.87
3058 3083 5.627499 TGACAATAAATGCACAGGAGAAC 57.373 39.130 0.00 0.00 0.00 3.01
3059 3084 5.069318 TGACAATAAATGCACAGGAGAACA 58.931 37.500 0.00 0.00 0.00 3.18
3060 3085 5.534278 TGACAATAAATGCACAGGAGAACAA 59.466 36.000 0.00 0.00 0.00 2.83
3061 3086 6.017400 ACAATAAATGCACAGGAGAACAAG 57.983 37.500 0.00 0.00 0.00 3.16
3062 3087 4.708726 ATAAATGCACAGGAGAACAAGC 57.291 40.909 0.00 0.00 0.00 4.01
3063 3088 2.283145 AATGCACAGGAGAACAAGCT 57.717 45.000 0.00 0.00 0.00 3.74
3064 3089 1.818642 ATGCACAGGAGAACAAGCTC 58.181 50.000 0.00 0.00 0.00 4.09
3075 3100 4.123506 GAGAACAAGCTCCTATTAGCACC 58.876 47.826 0.00 0.00 45.30 5.01
3076 3101 3.777522 AGAACAAGCTCCTATTAGCACCT 59.222 43.478 0.00 0.00 45.30 4.00
3077 3102 3.828875 ACAAGCTCCTATTAGCACCTC 57.171 47.619 0.00 0.00 45.30 3.85
3078 3103 3.379452 ACAAGCTCCTATTAGCACCTCT 58.621 45.455 0.00 0.00 45.30 3.69
3079 3104 3.777522 ACAAGCTCCTATTAGCACCTCTT 59.222 43.478 0.00 0.00 45.30 2.85
3080 3105 4.125703 CAAGCTCCTATTAGCACCTCTTG 58.874 47.826 0.00 0.00 45.30 3.02
3081 3106 2.703007 AGCTCCTATTAGCACCTCTTGG 59.297 50.000 0.00 0.00 45.30 3.61
3082 3107 2.224402 GCTCCTATTAGCACCTCTTGGG 60.224 54.545 0.00 0.00 42.30 4.12
3094 3119 3.739401 CCTCTTGGGTGGGATAGTTTT 57.261 47.619 0.00 0.00 0.00 2.43
3095 3120 4.047627 CCTCTTGGGTGGGATAGTTTTT 57.952 45.455 0.00 0.00 0.00 1.94
3117 3142 4.799564 TTTTGGATGGGTTAGATGCAAC 57.200 40.909 0.00 0.00 31.67 4.17
3118 3143 3.737559 TTGGATGGGTTAGATGCAACT 57.262 42.857 0.86 0.86 0.00 3.16
3119 3144 4.853468 TTGGATGGGTTAGATGCAACTA 57.147 40.909 0.00 0.00 0.00 2.24
3120 3145 4.422073 TGGATGGGTTAGATGCAACTAG 57.578 45.455 3.75 0.00 0.00 2.57
3121 3146 3.142174 GGATGGGTTAGATGCAACTAGC 58.858 50.000 9.01 9.01 45.96 3.42
3122 3147 3.181450 GGATGGGTTAGATGCAACTAGCT 60.181 47.826 15.59 0.00 45.94 3.32
3123 3148 3.543680 TGGGTTAGATGCAACTAGCTC 57.456 47.619 15.59 13.07 45.94 4.09
3124 3149 2.837591 TGGGTTAGATGCAACTAGCTCA 59.162 45.455 15.04 15.04 45.94 4.26
3125 3150 3.263170 TGGGTTAGATGCAACTAGCTCAA 59.737 43.478 16.37 2.69 45.94 3.02
3126 3151 4.261801 GGGTTAGATGCAACTAGCTCAAA 58.738 43.478 15.59 0.00 45.94 2.69
3127 3152 4.095036 GGGTTAGATGCAACTAGCTCAAAC 59.905 45.833 15.59 7.06 45.94 2.93
3128 3153 4.938226 GGTTAGATGCAACTAGCTCAAACT 59.062 41.667 15.59 0.00 45.94 2.66
3129 3154 6.106673 GGTTAGATGCAACTAGCTCAAACTA 58.893 40.000 15.59 0.00 45.94 2.24
3130 3155 6.763610 GGTTAGATGCAACTAGCTCAAACTAT 59.236 38.462 15.59 0.00 45.94 2.12
3131 3156 7.042389 GGTTAGATGCAACTAGCTCAAACTATC 60.042 40.741 15.59 0.00 45.94 2.08
3132 3157 5.363939 AGATGCAACTAGCTCAAACTATCC 58.636 41.667 0.00 0.00 45.94 2.59
3133 3158 3.873910 TGCAACTAGCTCAAACTATCCC 58.126 45.455 0.00 0.00 45.94 3.85
3134 3159 3.519510 TGCAACTAGCTCAAACTATCCCT 59.480 43.478 0.00 0.00 45.94 4.20
3135 3160 4.123506 GCAACTAGCTCAAACTATCCCTC 58.876 47.826 0.00 0.00 41.15 4.30
3136 3161 4.383118 GCAACTAGCTCAAACTATCCCTCA 60.383 45.833 0.00 0.00 41.15 3.86
3137 3162 5.686124 GCAACTAGCTCAAACTATCCCTCAT 60.686 44.000 0.00 0.00 41.15 2.90
3138 3163 5.543507 ACTAGCTCAAACTATCCCTCATG 57.456 43.478 0.00 0.00 0.00 3.07
3139 3164 4.965532 ACTAGCTCAAACTATCCCTCATGT 59.034 41.667 0.00 0.00 0.00 3.21
3140 3165 4.851639 AGCTCAAACTATCCCTCATGTT 57.148 40.909 0.00 0.00 0.00 2.71
3141 3166 5.184892 AGCTCAAACTATCCCTCATGTTT 57.815 39.130 0.00 0.00 33.56 2.83
3142 3167 4.946157 AGCTCAAACTATCCCTCATGTTTG 59.054 41.667 10.13 10.13 45.95 2.93
3143 3168 4.096984 GCTCAAACTATCCCTCATGTTTGG 59.903 45.833 14.62 8.61 45.18 3.28
3144 3169 5.500234 CTCAAACTATCCCTCATGTTTGGA 58.500 41.667 14.62 0.00 45.18 3.53
3145 3170 6.078456 TCAAACTATCCCTCATGTTTGGAT 57.922 37.500 14.62 14.67 45.18 3.41
3146 3171 7.206789 TCAAACTATCCCTCATGTTTGGATA 57.793 36.000 14.62 15.16 45.18 2.59
3147 3172 7.054124 TCAAACTATCCCTCATGTTTGGATAC 58.946 38.462 14.62 0.00 45.18 2.24
3148 3173 6.831664 AACTATCCCTCATGTTTGGATACT 57.168 37.500 13.18 5.82 39.55 2.12
3149 3174 6.831664 ACTATCCCTCATGTTTGGATACTT 57.168 37.500 13.18 4.95 39.55 2.24
3150 3175 7.213178 ACTATCCCTCATGTTTGGATACTTT 57.787 36.000 13.18 3.26 39.55 2.66
3151 3176 8.331931 ACTATCCCTCATGTTTGGATACTTTA 57.668 34.615 13.18 0.95 39.55 1.85
3152 3177 8.432805 ACTATCCCTCATGTTTGGATACTTTAG 58.567 37.037 13.18 9.55 39.55 1.85
3153 3178 6.001449 TCCCTCATGTTTGGATACTTTAGG 57.999 41.667 0.00 0.00 37.61 2.69
3154 3179 5.104109 TCCCTCATGTTTGGATACTTTAGGG 60.104 44.000 0.00 0.00 41.13 3.53
3155 3180 4.580580 CCTCATGTTTGGATACTTTAGGGC 59.419 45.833 0.00 0.00 37.61 5.19
3156 3181 5.440610 CTCATGTTTGGATACTTTAGGGCT 58.559 41.667 0.00 0.00 37.61 5.19
3157 3182 6.409234 CCTCATGTTTGGATACTTTAGGGCTA 60.409 42.308 0.00 0.00 37.61 3.93
3158 3183 6.591935 TCATGTTTGGATACTTTAGGGCTAG 58.408 40.000 0.00 0.00 37.61 3.42
3159 3184 6.157994 TCATGTTTGGATACTTTAGGGCTAGT 59.842 38.462 0.00 0.00 37.61 2.57
3160 3185 6.382919 TGTTTGGATACTTTAGGGCTAGTT 57.617 37.500 0.00 0.00 37.61 2.24
3161 3186 6.177610 TGTTTGGATACTTTAGGGCTAGTTG 58.822 40.000 0.00 0.00 37.61 3.16
3162 3187 6.013206 TGTTTGGATACTTTAGGGCTAGTTGA 60.013 38.462 0.00 0.00 37.61 3.18
3163 3188 5.871396 TGGATACTTTAGGGCTAGTTGAG 57.129 43.478 0.00 0.00 37.61 3.02
3164 3189 4.101119 TGGATACTTTAGGGCTAGTTGAGC 59.899 45.833 0.00 0.00 44.93 4.26
3174 3199 2.010497 GCTAGTTGAGCCCAAACTAGC 58.990 52.381 26.73 26.73 46.41 3.42
3175 3200 2.355209 GCTAGTTGAGCCCAAACTAGCT 60.355 50.000 30.05 9.80 46.41 3.32
3182 3207 1.560146 AGCCCAAACTAGCTCTAACCC 59.440 52.381 0.00 0.00 32.71 4.11
3183 3208 1.280998 GCCCAAACTAGCTCTAACCCA 59.719 52.381 0.00 0.00 0.00 4.51
3184 3209 2.092375 GCCCAAACTAGCTCTAACCCAT 60.092 50.000 0.00 0.00 0.00 4.00
3185 3210 3.624959 GCCCAAACTAGCTCTAACCCATT 60.625 47.826 0.00 0.00 0.00 3.16
3186 3211 3.947834 CCCAAACTAGCTCTAACCCATTG 59.052 47.826 0.00 0.00 0.00 2.82
3187 3212 4.324254 CCCAAACTAGCTCTAACCCATTGA 60.324 45.833 0.00 0.00 0.00 2.57
3188 3213 5.440610 CCAAACTAGCTCTAACCCATTGAT 58.559 41.667 0.00 0.00 0.00 2.57
3189 3214 5.529060 CCAAACTAGCTCTAACCCATTGATC 59.471 44.000 0.00 0.00 0.00 2.92
3190 3215 4.965200 ACTAGCTCTAACCCATTGATCC 57.035 45.455 0.00 0.00 0.00 3.36
3191 3216 4.298626 ACTAGCTCTAACCCATTGATCCA 58.701 43.478 0.00 0.00 0.00 3.41
3192 3217 4.721776 ACTAGCTCTAACCCATTGATCCAA 59.278 41.667 0.00 0.00 0.00 3.53
3193 3218 4.591321 AGCTCTAACCCATTGATCCAAA 57.409 40.909 0.00 0.00 0.00 3.28
3194 3219 4.273318 AGCTCTAACCCATTGATCCAAAC 58.727 43.478 0.00 0.00 0.00 2.93
3195 3220 4.016444 GCTCTAACCCATTGATCCAAACA 58.984 43.478 0.00 0.00 0.00 2.83
3196 3221 4.646492 GCTCTAACCCATTGATCCAAACAT 59.354 41.667 0.00 0.00 0.00 2.71
3197 3222 5.450965 GCTCTAACCCATTGATCCAAACATG 60.451 44.000 0.00 0.00 0.00 3.21
3198 3223 4.955450 TCTAACCCATTGATCCAAACATGG 59.045 41.667 0.00 0.00 0.00 3.66
3199 3224 1.832998 ACCCATTGATCCAAACATGGC 59.167 47.619 0.00 0.00 0.00 4.40
3200 3225 1.139455 CCCATTGATCCAAACATGGCC 59.861 52.381 0.00 0.00 0.00 5.36
3201 3226 1.832366 CCATTGATCCAAACATGGCCA 59.168 47.619 8.56 8.56 0.00 5.36
3204 3229 4.101274 CCATTGATCCAAACATGGCCATAA 59.899 41.667 20.30 6.04 0.00 1.90
3211 3236 6.279513 TCCAAACATGGCCATAAAAGTAAG 57.720 37.500 20.30 5.85 0.00 2.34
3294 3319 4.209307 TCACCGTAGCAAATGGTATCAA 57.791 40.909 2.90 0.00 46.40 2.57
3361 3386 5.432885 AACATTTGGGTTCACTAAACTCG 57.567 39.130 0.00 0.00 41.66 4.18
3636 3662 7.750458 GGATGTATGTAGACATGTTTTTGTGTG 59.250 37.037 0.00 0.00 40.18 3.82
3640 3666 7.754069 ATGTAGACATGTTTTTGTGTGTTTG 57.246 32.000 0.00 0.00 34.83 2.93
3643 3669 7.653713 TGTAGACATGTTTTTGTGTGTTTGTTT 59.346 29.630 0.00 0.00 0.00 2.83
3647 3673 8.371770 ACATGTTTTTGTGTGTTTGTTTACTT 57.628 26.923 0.00 0.00 0.00 2.24
3656 3682 9.915629 TTGTGTGTTTGTTTACTTATTTCACTT 57.084 25.926 0.00 0.00 0.00 3.16
3675 3701 7.239763 TCACTTTGTGTCTAGTCCATATTGA 57.760 36.000 0.00 0.00 34.79 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.437013 TTGGGGTTTGGGGAGGGTAC 61.437 60.000 0.00 0.00 0.00 3.34
7 8 1.072063 TTGGGGTTTGGGGAGGGTA 60.072 57.895 0.00 0.00 0.00 3.69
8 9 2.371811 TTGGGGTTTGGGGAGGGT 60.372 61.111 0.00 0.00 0.00 4.34
9 10 2.445155 CTTGGGGTTTGGGGAGGG 59.555 66.667 0.00 0.00 0.00 4.30
10 11 2.283894 GCTTGGGGTTTGGGGAGG 60.284 66.667 0.00 0.00 0.00 4.30
11 12 2.283894 GGCTTGGGGTTTGGGGAG 60.284 66.667 0.00 0.00 0.00 4.30
12 13 2.785389 AGGCTTGGGGTTTGGGGA 60.785 61.111 0.00 0.00 0.00 4.81
49 50 2.827322 TCCCCAAATTGAAGCAGTCATG 59.173 45.455 0.00 0.00 35.70 3.07
144 150 0.947244 CAGTTTCAGGTGTGGCTGAC 59.053 55.000 0.00 0.00 0.00 3.51
207 213 9.851686 AGATAATATATGCAAGTGTTTGAGGAA 57.148 29.630 0.00 0.00 36.36 3.36
315 322 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
334 341 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
335 342 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
336 343 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
337 344 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
338 345 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
381 388 4.467084 TCCAAAGCGCCCGCCTAG 62.467 66.667 2.29 0.00 43.17 3.02
382 389 4.770874 GTCCAAAGCGCCCGCCTA 62.771 66.667 2.29 0.00 43.17 3.93
390 397 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
408 415 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
409 416 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
410 417 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
411 418 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
412 419 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
413 420 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
414 421 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
415 422 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
416 423 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
417 424 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
427 434 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
435 442 4.516195 GTCGAAGCGCTCCCCCTC 62.516 72.222 12.06 2.47 0.00 4.30
472 479 0.174162 TAAAGCGTCCCTAAGGCGAC 59.826 55.000 0.00 0.00 43.57 5.19
473 480 0.896923 TTAAAGCGTCCCTAAGGCGA 59.103 50.000 0.00 0.00 43.57 5.54
474 481 1.729284 TTTAAAGCGTCCCTAAGGCG 58.271 50.000 0.00 0.00 43.57 5.52
475 482 3.253921 TGTTTTTAAAGCGTCCCTAAGGC 59.746 43.478 0.00 0.00 39.09 4.35
476 483 5.638596 ATGTTTTTAAAGCGTCCCTAAGG 57.361 39.130 0.00 0.00 0.00 2.69
477 484 6.093633 AGCTATGTTTTTAAAGCGTCCCTAAG 59.906 38.462 0.00 0.00 39.94 2.18
478 485 5.941647 AGCTATGTTTTTAAAGCGTCCCTAA 59.058 36.000 0.00 0.00 39.94 2.69
479 486 5.493809 AGCTATGTTTTTAAAGCGTCCCTA 58.506 37.500 0.00 0.00 39.94 3.53
480 487 4.332828 AGCTATGTTTTTAAAGCGTCCCT 58.667 39.130 0.00 0.00 39.94 4.20
481 488 4.155280 TGAGCTATGTTTTTAAAGCGTCCC 59.845 41.667 0.00 0.00 39.94 4.46
482 489 5.291293 TGAGCTATGTTTTTAAAGCGTCC 57.709 39.130 0.00 0.00 39.94 4.79
483 490 7.537306 TCAAATGAGCTATGTTTTTAAAGCGTC 59.463 33.333 0.00 0.00 39.94 5.19
484 491 7.367285 TCAAATGAGCTATGTTTTTAAAGCGT 58.633 30.769 0.00 0.00 39.94 5.07
485 492 7.795431 TCAAATGAGCTATGTTTTTAAAGCG 57.205 32.000 0.00 0.00 39.94 4.68
486 493 9.962759 CATTCAAATGAGCTATGTTTTTAAAGC 57.037 29.630 0.00 0.00 38.70 3.51
489 496 8.924691 GCACATTCAAATGAGCTATGTTTTTAA 58.075 29.630 15.14 0.00 45.55 1.52
490 497 8.464770 GCACATTCAAATGAGCTATGTTTTTA 57.535 30.769 15.14 0.00 45.55 1.52
491 498 7.355332 GCACATTCAAATGAGCTATGTTTTT 57.645 32.000 15.14 0.00 45.55 1.94
492 499 6.956299 GCACATTCAAATGAGCTATGTTTT 57.044 33.333 15.14 0.00 45.55 2.43
501 508 8.506437 TCTTACAGTAAAGCACATTCAAATGAG 58.494 33.333 9.62 3.01 39.67 2.90
502 509 8.389779 TCTTACAGTAAAGCACATTCAAATGA 57.610 30.769 9.62 0.00 39.67 2.57
503 510 7.272084 GCTCTTACAGTAAAGCACATTCAAATG 59.728 37.037 16.43 1.20 42.10 2.32
504 511 7.175641 AGCTCTTACAGTAAAGCACATTCAAAT 59.824 33.333 20.40 3.90 37.22 2.32
505 512 6.486657 AGCTCTTACAGTAAAGCACATTCAAA 59.513 34.615 20.40 0.00 37.22 2.69
506 513 5.997746 AGCTCTTACAGTAAAGCACATTCAA 59.002 36.000 20.40 0.00 37.22 2.69
507 514 5.551233 AGCTCTTACAGTAAAGCACATTCA 58.449 37.500 20.40 0.00 37.22 2.57
508 515 5.639506 TGAGCTCTTACAGTAAAGCACATTC 59.360 40.000 16.19 13.53 37.22 2.67
595 602 5.147330 TCTGGACACGTGACAGATAATTT 57.853 39.130 29.82 5.78 36.41 1.82
712 719 5.163663 CCGGCAGTTTCTAAATTAGCAATCA 60.164 40.000 0.00 0.00 0.00 2.57
782 790 5.488341 TGAATTGGTAGTTGAGCTCTTACC 58.512 41.667 24.02 24.02 0.00 2.85
930 938 3.387397 ACGATTTTTCGAACCGAGAAGT 58.613 40.909 0.00 0.00 37.14 3.01
949 957 9.923143 TTATATTCAGATCCAACATTAGGTACG 57.077 33.333 0.00 0.00 0.00 3.67
997 1005 0.318441 ACCTCACGTCCAGACATGTG 59.682 55.000 1.15 0.00 0.00 3.21
1398 1407 5.477984 TCTTTCCATGACCCTCATTTCAAAG 59.522 40.000 0.00 0.00 34.28 2.77
1447 1466 8.245195 TCTATATCTGTACAAGCACAATACCA 57.755 34.615 0.00 0.00 0.00 3.25
1555 1575 4.437930 GCCTTGATCTTTTTCCTGATCACG 60.438 45.833 5.32 4.33 45.72 4.35
1609 1629 3.679980 CCGAACACAACACTGATAAGAGG 59.320 47.826 0.00 0.00 0.00 3.69
1614 1634 2.365941 TGTCCCGAACACAACACTGATA 59.634 45.455 0.00 0.00 31.20 2.15
1637 1657 3.737266 CACAACTGCCAGCAAGTTAAATG 59.263 43.478 0.00 0.00 0.00 2.32
2087 2110 7.316544 CAAGAACGCTTGGGTTATACTAAAT 57.683 36.000 3.09 0.00 46.13 1.40
2380 2403 1.192534 GGAAACAGAGTCTTTGTCGCG 59.807 52.381 0.00 0.00 0.00 5.87
2532 2556 5.023452 TCTTGTTCCTGCTTAGGTCTATCA 58.977 41.667 0.00 0.00 0.00 2.15
2563 2587 4.769688 TCATGCGTAGACATTTTCCTCAT 58.230 39.130 0.00 0.00 0.00 2.90
2582 2606 6.064060 TGAGACAGTTCATTTTCACCTTCAT 58.936 36.000 0.00 0.00 0.00 2.57
2600 2624 2.894731 AGATGACAGACCCTTGAGACA 58.105 47.619 0.00 0.00 0.00 3.41
2611 2635 3.141398 GAGGTTGCACAAAGATGACAGA 58.859 45.455 0.00 0.00 0.00 3.41
2613 2637 2.880268 CAGAGGTTGCACAAAGATGACA 59.120 45.455 0.00 0.00 0.00 3.58
2618 2642 2.708216 TGACAGAGGTTGCACAAAGA 57.292 45.000 0.00 0.00 0.00 2.52
2726 2750 3.119316 ACAACAATTTCTTCACGCCACAA 60.119 39.130 0.00 0.00 0.00 3.33
2727 2751 2.425312 ACAACAATTTCTTCACGCCACA 59.575 40.909 0.00 0.00 0.00 4.17
2736 2760 5.365619 ACACGGAGTCTACAACAATTTCTT 58.634 37.500 0.00 0.00 41.61 2.52
2827 2852 2.234661 TCCAGCAGTGACACCTAATCAG 59.765 50.000 0.84 0.00 0.00 2.90
2840 2865 1.074405 TCAGGCTTGATTTCCAGCAGT 59.926 47.619 0.00 0.00 0.00 4.40
2928 2953 5.977489 AAGTTAAAGTATCCAAACAGGGC 57.023 39.130 0.00 0.00 38.24 5.19
2929 2954 6.884836 AGCTAAGTTAAAGTATCCAAACAGGG 59.115 38.462 0.00 0.00 38.24 4.45
2930 2955 7.923414 AGCTAAGTTAAAGTATCCAAACAGG 57.077 36.000 0.00 0.00 39.47 4.00
2931 2956 9.871238 TCTAGCTAAGTTAAAGTATCCAAACAG 57.129 33.333 0.00 0.00 0.00 3.16
2932 2957 9.871238 CTCTAGCTAAGTTAAAGTATCCAAACA 57.129 33.333 0.00 0.00 0.00 2.83
2933 2958 9.315525 CCTCTAGCTAAGTTAAAGTATCCAAAC 57.684 37.037 0.00 0.00 0.00 2.93
2934 2959 9.043548 ACCTCTAGCTAAGTTAAAGTATCCAAA 57.956 33.333 0.00 0.00 0.00 3.28
2935 2960 8.605325 ACCTCTAGCTAAGTTAAAGTATCCAA 57.395 34.615 0.00 0.00 0.00 3.53
2936 2961 8.605325 AACCTCTAGCTAAGTTAAAGTATCCA 57.395 34.615 0.00 0.00 0.00 3.41
2940 2965 9.972106 ACTCTAACCTCTAGCTAAGTTAAAGTA 57.028 33.333 12.11 1.65 27.17 2.24
2941 2966 8.882557 ACTCTAACCTCTAGCTAAGTTAAAGT 57.117 34.615 9.53 9.53 0.00 2.66
2943 2968 9.924650 CAAACTCTAACCTCTAGCTAAGTTAAA 57.075 33.333 10.31 0.40 0.00 1.52
2944 2969 9.086758 ACAAACTCTAACCTCTAGCTAAGTTAA 57.913 33.333 10.31 4.05 0.00 2.01
2945 2970 8.647256 ACAAACTCTAACCTCTAGCTAAGTTA 57.353 34.615 4.15 6.95 0.00 2.24
2946 2971 7.541916 ACAAACTCTAACCTCTAGCTAAGTT 57.458 36.000 0.00 1.97 0.00 2.66
2947 2972 7.541916 AACAAACTCTAACCTCTAGCTAAGT 57.458 36.000 0.00 0.00 0.00 2.24
2948 2973 8.308207 AGAAACAAACTCTAACCTCTAGCTAAG 58.692 37.037 0.00 0.00 0.00 2.18
2949 2974 8.191534 AGAAACAAACTCTAACCTCTAGCTAA 57.808 34.615 0.00 0.00 0.00 3.09
2950 2975 7.778185 AGAAACAAACTCTAACCTCTAGCTA 57.222 36.000 0.00 0.00 0.00 3.32
2951 2976 6.673839 AGAAACAAACTCTAACCTCTAGCT 57.326 37.500 0.00 0.00 0.00 3.32
2952 2977 6.532302 GCTAGAAACAAACTCTAACCTCTAGC 59.468 42.308 10.89 10.89 45.64 3.42
2953 2978 7.832769 AGCTAGAAACAAACTCTAACCTCTAG 58.167 38.462 0.00 0.00 36.03 2.43
2954 2979 7.450634 TGAGCTAGAAACAAACTCTAACCTCTA 59.549 37.037 0.00 0.00 31.48 2.43
2955 2980 6.267928 TGAGCTAGAAACAAACTCTAACCTCT 59.732 38.462 0.00 0.00 31.48 3.69
2956 2981 6.456501 TGAGCTAGAAACAAACTCTAACCTC 58.543 40.000 0.00 0.00 31.17 3.85
2957 2982 6.420913 TGAGCTAGAAACAAACTCTAACCT 57.579 37.500 0.00 0.00 0.00 3.50
2958 2983 6.874134 TCATGAGCTAGAAACAAACTCTAACC 59.126 38.462 0.00 0.00 0.00 2.85
2959 2984 7.600752 AGTCATGAGCTAGAAACAAACTCTAAC 59.399 37.037 0.00 0.00 0.00 2.34
2960 2985 7.671302 AGTCATGAGCTAGAAACAAACTCTAA 58.329 34.615 0.00 0.00 0.00 2.10
2961 2986 7.233389 AGTCATGAGCTAGAAACAAACTCTA 57.767 36.000 0.00 0.00 0.00 2.43
2962 2987 6.107901 AGTCATGAGCTAGAAACAAACTCT 57.892 37.500 0.00 0.00 0.00 3.24
2963 2988 7.148557 GGTTAGTCATGAGCTAGAAACAAACTC 60.149 40.741 0.00 0.00 0.00 3.01
2964 2989 6.651225 GGTTAGTCATGAGCTAGAAACAAACT 59.349 38.462 0.00 1.82 0.00 2.66
2965 2990 6.128254 GGGTTAGTCATGAGCTAGAAACAAAC 60.128 42.308 0.00 0.00 0.00 2.93
2966 2991 5.938125 GGGTTAGTCATGAGCTAGAAACAAA 59.062 40.000 0.00 0.00 0.00 2.83
2967 2992 5.248477 AGGGTTAGTCATGAGCTAGAAACAA 59.752 40.000 0.00 0.00 0.00 2.83
2968 2993 4.777896 AGGGTTAGTCATGAGCTAGAAACA 59.222 41.667 0.00 0.00 0.00 2.83
2969 2994 5.105310 TCAGGGTTAGTCATGAGCTAGAAAC 60.105 44.000 0.00 0.00 0.00 2.78
2970 2995 5.023452 TCAGGGTTAGTCATGAGCTAGAAA 58.977 41.667 0.00 0.00 0.00 2.52
2971 2996 4.610333 TCAGGGTTAGTCATGAGCTAGAA 58.390 43.478 0.00 0.00 0.00 2.10
2972 2997 4.251103 TCAGGGTTAGTCATGAGCTAGA 57.749 45.455 0.00 0.00 0.00 2.43
2973 2998 4.404073 AGTTCAGGGTTAGTCATGAGCTAG 59.596 45.833 0.00 0.00 32.37 3.42
2974 2999 4.353777 AGTTCAGGGTTAGTCATGAGCTA 58.646 43.478 0.00 0.00 32.37 3.32
2975 3000 3.177228 AGTTCAGGGTTAGTCATGAGCT 58.823 45.455 0.00 0.00 0.00 4.09
2976 3001 3.618690 AGTTCAGGGTTAGTCATGAGC 57.381 47.619 0.00 0.00 0.00 4.26
2977 3002 7.560368 AGAATTAGTTCAGGGTTAGTCATGAG 58.440 38.462 0.00 0.00 36.79 2.90
2978 3003 7.496346 AGAATTAGTTCAGGGTTAGTCATGA 57.504 36.000 0.44 0.00 36.79 3.07
2979 3004 7.439655 GCTAGAATTAGTTCAGGGTTAGTCATG 59.560 40.741 0.00 0.00 36.79 3.07
2980 3005 7.419172 GGCTAGAATTAGTTCAGGGTTAGTCAT 60.419 40.741 0.00 0.00 36.79 3.06
2981 3006 6.127140 GGCTAGAATTAGTTCAGGGTTAGTCA 60.127 42.308 0.00 0.00 36.79 3.41
2982 3007 6.127140 TGGCTAGAATTAGTTCAGGGTTAGTC 60.127 42.308 0.00 0.00 36.79 2.59
2983 3008 5.724854 TGGCTAGAATTAGTTCAGGGTTAGT 59.275 40.000 0.00 0.00 36.79 2.24
2984 3009 6.235231 TGGCTAGAATTAGTTCAGGGTTAG 57.765 41.667 0.00 0.00 36.79 2.34
2985 3010 6.630203 TTGGCTAGAATTAGTTCAGGGTTA 57.370 37.500 0.00 0.00 36.79 2.85
2986 3011 5.514500 TTGGCTAGAATTAGTTCAGGGTT 57.486 39.130 0.00 0.00 36.79 4.11
2987 3012 5.250774 TCTTTGGCTAGAATTAGTTCAGGGT 59.749 40.000 0.00 0.00 36.79 4.34
2988 3013 5.745227 TCTTTGGCTAGAATTAGTTCAGGG 58.255 41.667 0.00 0.00 36.79 4.45
2989 3014 5.819901 CCTCTTTGGCTAGAATTAGTTCAGG 59.180 44.000 0.00 0.00 36.79 3.86
2990 3015 6.314896 CACCTCTTTGGCTAGAATTAGTTCAG 59.685 42.308 0.00 0.00 40.22 3.02
2991 3016 6.173339 CACCTCTTTGGCTAGAATTAGTTCA 58.827 40.000 0.00 0.00 40.22 3.18
2992 3017 6.174049 ACACCTCTTTGGCTAGAATTAGTTC 58.826 40.000 0.00 0.00 40.22 3.01
2993 3018 6.128138 ACACCTCTTTGGCTAGAATTAGTT 57.872 37.500 0.00 0.00 40.22 2.24
2994 3019 5.763876 ACACCTCTTTGGCTAGAATTAGT 57.236 39.130 0.00 0.00 40.22 2.24
2995 3020 6.127897 CCAAACACCTCTTTGGCTAGAATTAG 60.128 42.308 0.00 0.00 42.89 1.73
2996 3021 5.710099 CCAAACACCTCTTTGGCTAGAATTA 59.290 40.000 0.00 0.00 42.89 1.40
2997 3022 4.524328 CCAAACACCTCTTTGGCTAGAATT 59.476 41.667 0.00 0.00 42.89 2.17
2998 3023 4.082125 CCAAACACCTCTTTGGCTAGAAT 58.918 43.478 0.00 0.00 42.89 2.40
2999 3024 3.137544 TCCAAACACCTCTTTGGCTAGAA 59.862 43.478 5.91 0.00 46.88 2.10
3000 3025 2.708861 TCCAAACACCTCTTTGGCTAGA 59.291 45.455 5.91 0.00 46.88 2.43
3001 3026 2.814336 GTCCAAACACCTCTTTGGCTAG 59.186 50.000 5.91 0.00 46.88 3.42
3002 3027 2.808933 CGTCCAAACACCTCTTTGGCTA 60.809 50.000 5.91 0.00 46.88 3.93
3003 3028 1.692411 GTCCAAACACCTCTTTGGCT 58.308 50.000 5.91 0.00 46.88 4.75
3004 3029 0.310854 CGTCCAAACACCTCTTTGGC 59.689 55.000 5.91 1.80 46.88 4.52
3006 3031 3.684788 CCTATCGTCCAAACACCTCTTTG 59.315 47.826 0.00 0.00 0.00 2.77
3007 3032 3.307480 CCCTATCGTCCAAACACCTCTTT 60.307 47.826 0.00 0.00 0.00 2.52
3008 3033 2.236395 CCCTATCGTCCAAACACCTCTT 59.764 50.000 0.00 0.00 0.00 2.85
3009 3034 1.831736 CCCTATCGTCCAAACACCTCT 59.168 52.381 0.00 0.00 0.00 3.69
3010 3035 1.553704 ACCCTATCGTCCAAACACCTC 59.446 52.381 0.00 0.00 0.00 3.85
3011 3036 1.652947 ACCCTATCGTCCAAACACCT 58.347 50.000 0.00 0.00 0.00 4.00
3012 3037 2.484742 AACCCTATCGTCCAAACACC 57.515 50.000 0.00 0.00 0.00 4.16
3013 3038 4.460948 TCTAACCCTATCGTCCAAACAC 57.539 45.455 0.00 0.00 0.00 3.32
3014 3039 5.188163 TCAATCTAACCCTATCGTCCAAACA 59.812 40.000 0.00 0.00 0.00 2.83
3015 3040 5.522824 GTCAATCTAACCCTATCGTCCAAAC 59.477 44.000 0.00 0.00 0.00 2.93
3016 3041 5.188163 TGTCAATCTAACCCTATCGTCCAAA 59.812 40.000 0.00 0.00 0.00 3.28
3017 3042 4.712829 TGTCAATCTAACCCTATCGTCCAA 59.287 41.667 0.00 0.00 0.00 3.53
3018 3043 4.283337 TGTCAATCTAACCCTATCGTCCA 58.717 43.478 0.00 0.00 0.00 4.02
3019 3044 4.931661 TGTCAATCTAACCCTATCGTCC 57.068 45.455 0.00 0.00 0.00 4.79
3020 3045 8.882415 TTTATTGTCAATCTAACCCTATCGTC 57.118 34.615 0.07 0.00 0.00 4.20
3021 3046 9.273016 CATTTATTGTCAATCTAACCCTATCGT 57.727 33.333 0.07 0.00 0.00 3.73
3022 3047 8.230486 GCATTTATTGTCAATCTAACCCTATCG 58.770 37.037 0.07 0.00 0.00 2.92
3023 3048 9.066892 TGCATTTATTGTCAATCTAACCCTATC 57.933 33.333 0.07 0.00 0.00 2.08
3024 3049 8.850156 GTGCATTTATTGTCAATCTAACCCTAT 58.150 33.333 0.07 0.00 0.00 2.57
3025 3050 7.831690 TGTGCATTTATTGTCAATCTAACCCTA 59.168 33.333 0.07 0.00 0.00 3.53
3026 3051 6.663093 TGTGCATTTATTGTCAATCTAACCCT 59.337 34.615 0.07 0.00 0.00 4.34
3027 3052 6.862209 TGTGCATTTATTGTCAATCTAACCC 58.138 36.000 0.07 0.00 0.00 4.11
3028 3053 6.974622 CCTGTGCATTTATTGTCAATCTAACC 59.025 38.462 0.07 0.00 0.00 2.85
3029 3054 7.761409 TCCTGTGCATTTATTGTCAATCTAAC 58.239 34.615 0.07 0.00 0.00 2.34
3030 3055 7.828717 TCTCCTGTGCATTTATTGTCAATCTAA 59.171 33.333 0.07 0.00 0.00 2.10
3031 3056 7.337938 TCTCCTGTGCATTTATTGTCAATCTA 58.662 34.615 0.07 0.00 0.00 1.98
3032 3057 6.182627 TCTCCTGTGCATTTATTGTCAATCT 58.817 36.000 0.07 0.00 0.00 2.40
3033 3058 6.441093 TCTCCTGTGCATTTATTGTCAATC 57.559 37.500 0.07 0.00 0.00 2.67
3034 3059 6.209192 TGTTCTCCTGTGCATTTATTGTCAAT 59.791 34.615 3.06 3.06 0.00 2.57
3035 3060 5.534278 TGTTCTCCTGTGCATTTATTGTCAA 59.466 36.000 0.00 0.00 0.00 3.18
3036 3061 5.069318 TGTTCTCCTGTGCATTTATTGTCA 58.931 37.500 0.00 0.00 0.00 3.58
3037 3062 5.627499 TGTTCTCCTGTGCATTTATTGTC 57.373 39.130 0.00 0.00 0.00 3.18
3038 3063 5.565439 GCTTGTTCTCCTGTGCATTTATTGT 60.565 40.000 0.00 0.00 0.00 2.71
3039 3064 4.860907 GCTTGTTCTCCTGTGCATTTATTG 59.139 41.667 0.00 0.00 0.00 1.90
3040 3065 4.768968 AGCTTGTTCTCCTGTGCATTTATT 59.231 37.500 0.00 0.00 0.00 1.40
3041 3066 4.338879 AGCTTGTTCTCCTGTGCATTTAT 58.661 39.130 0.00 0.00 0.00 1.40
3042 3067 3.753272 GAGCTTGTTCTCCTGTGCATTTA 59.247 43.478 0.00 0.00 0.00 1.40
3043 3068 2.555757 GAGCTTGTTCTCCTGTGCATTT 59.444 45.455 0.00 0.00 0.00 2.32
3044 3069 2.157738 GAGCTTGTTCTCCTGTGCATT 58.842 47.619 0.00 0.00 0.00 3.56
3045 3070 1.818642 GAGCTTGTTCTCCTGTGCAT 58.181 50.000 0.00 0.00 0.00 3.96
3046 3071 3.312404 GAGCTTGTTCTCCTGTGCA 57.688 52.632 0.00 0.00 0.00 4.57
3052 3077 8.843377 GAGGTGCTAATAGGAGCTTGTTCTCC 62.843 50.000 14.39 1.71 44.42 3.71
3053 3078 4.123506 GGTGCTAATAGGAGCTTGTTCTC 58.876 47.826 3.71 0.00 43.27 2.87
3054 3079 3.777522 AGGTGCTAATAGGAGCTTGTTCT 59.222 43.478 7.69 0.00 41.68 3.01
3055 3080 4.123506 GAGGTGCTAATAGGAGCTTGTTC 58.876 47.826 14.39 0.00 44.42 3.18
3056 3081 3.777522 AGAGGTGCTAATAGGAGCTTGTT 59.222 43.478 14.39 2.13 44.42 2.83
3057 3082 3.379452 AGAGGTGCTAATAGGAGCTTGT 58.621 45.455 14.39 3.39 44.42 3.16
3058 3083 4.125703 CAAGAGGTGCTAATAGGAGCTTG 58.874 47.826 14.39 6.62 44.42 4.01
3059 3084 3.135530 CCAAGAGGTGCTAATAGGAGCTT 59.864 47.826 14.39 3.06 44.42 3.74
3061 3086 2.224402 CCCAAGAGGTGCTAATAGGAGC 60.224 54.545 2.68 2.68 43.16 4.70
3062 3087 3.760580 CCCAAGAGGTGCTAATAGGAG 57.239 52.381 0.00 0.00 0.00 3.69
3074 3099 3.739401 AAAACTATCCCACCCAAGAGG 57.261 47.619 0.00 0.00 43.78 3.69
3095 3120 4.837860 AGTTGCATCTAACCCATCCAAAAA 59.162 37.500 0.00 0.00 0.00 1.94
3096 3121 4.415596 AGTTGCATCTAACCCATCCAAAA 58.584 39.130 0.00 0.00 0.00 2.44
3097 3122 4.046286 AGTTGCATCTAACCCATCCAAA 57.954 40.909 0.00 0.00 0.00 3.28
3098 3123 3.737559 AGTTGCATCTAACCCATCCAA 57.262 42.857 0.00 0.00 0.00 3.53
3099 3124 3.433598 GCTAGTTGCATCTAACCCATCCA 60.434 47.826 6.01 0.00 42.31 3.41
3100 3125 3.142174 GCTAGTTGCATCTAACCCATCC 58.858 50.000 6.01 0.00 42.31 3.51
3101 3126 4.061596 GAGCTAGTTGCATCTAACCCATC 58.938 47.826 6.01 0.00 45.94 3.51
3102 3127 3.455910 TGAGCTAGTTGCATCTAACCCAT 59.544 43.478 6.01 0.00 45.94 4.00
3103 3128 2.837591 TGAGCTAGTTGCATCTAACCCA 59.162 45.455 6.01 0.00 45.94 4.51
3104 3129 3.543680 TGAGCTAGTTGCATCTAACCC 57.456 47.619 6.01 0.00 45.94 4.11
3105 3130 4.938226 AGTTTGAGCTAGTTGCATCTAACC 59.062 41.667 6.01 1.12 45.94 2.85
3106 3131 7.042389 GGATAGTTTGAGCTAGTTGCATCTAAC 60.042 40.741 6.01 4.36 45.94 2.34
3107 3132 6.986817 GGATAGTTTGAGCTAGTTGCATCTAA 59.013 38.462 6.01 0.00 45.94 2.10
3108 3133 6.463049 GGGATAGTTTGAGCTAGTTGCATCTA 60.463 42.308 4.48 4.48 45.94 1.98
3109 3134 5.363939 GGATAGTTTGAGCTAGTTGCATCT 58.636 41.667 2.28 2.28 45.94 2.90
3110 3135 4.513318 GGGATAGTTTGAGCTAGTTGCATC 59.487 45.833 0.00 0.00 45.94 3.91
3111 3136 4.164988 AGGGATAGTTTGAGCTAGTTGCAT 59.835 41.667 0.00 0.00 45.94 3.96
3112 3137 3.519510 AGGGATAGTTTGAGCTAGTTGCA 59.480 43.478 0.00 0.00 45.94 4.08
3113 3138 4.123506 GAGGGATAGTTTGAGCTAGTTGC 58.876 47.826 0.00 0.00 43.29 4.17
3114 3139 5.344743 TGAGGGATAGTTTGAGCTAGTTG 57.655 43.478 0.00 0.00 0.00 3.16
3115 3140 5.426833 ACATGAGGGATAGTTTGAGCTAGTT 59.573 40.000 0.00 0.00 0.00 2.24
3116 3141 4.965532 ACATGAGGGATAGTTTGAGCTAGT 59.034 41.667 0.00 0.00 0.00 2.57
3117 3142 5.543507 ACATGAGGGATAGTTTGAGCTAG 57.456 43.478 0.00 0.00 0.00 3.42
3118 3143 5.957771 AACATGAGGGATAGTTTGAGCTA 57.042 39.130 0.00 0.00 0.00 3.32
3119 3144 4.851639 AACATGAGGGATAGTTTGAGCT 57.148 40.909 0.00 0.00 0.00 4.09
3123 3148 7.056635 AGTATCCAAACATGAGGGATAGTTTG 58.943 38.462 18.47 9.27 42.09 2.93
3124 3149 7.213178 AGTATCCAAACATGAGGGATAGTTT 57.787 36.000 18.47 9.53 42.09 2.66
3125 3150 6.831664 AGTATCCAAACATGAGGGATAGTT 57.168 37.500 18.47 11.18 42.09 2.24
3126 3151 6.831664 AAGTATCCAAACATGAGGGATAGT 57.168 37.500 18.47 18.41 45.06 2.12
3127 3152 7.880195 CCTAAAGTATCCAAACATGAGGGATAG 59.120 40.741 18.47 11.75 42.65 2.08
3128 3153 7.202186 CCCTAAAGTATCCAAACATGAGGGATA 60.202 40.741 15.78 15.78 42.19 2.59
3129 3154 6.410853 CCCTAAAGTATCCAAACATGAGGGAT 60.411 42.308 17.27 17.27 42.19 3.85
3130 3155 5.104109 CCCTAAAGTATCCAAACATGAGGGA 60.104 44.000 0.00 3.26 42.19 4.20
3131 3156 5.133221 CCCTAAAGTATCCAAACATGAGGG 58.867 45.833 0.00 0.00 34.32 4.30
3132 3157 4.580580 GCCCTAAAGTATCCAAACATGAGG 59.419 45.833 0.00 0.00 0.00 3.86
3133 3158 5.440610 AGCCCTAAAGTATCCAAACATGAG 58.559 41.667 0.00 0.00 0.00 2.90
3134 3159 5.450818 AGCCCTAAAGTATCCAAACATGA 57.549 39.130 0.00 0.00 0.00 3.07
3135 3160 6.357367 ACTAGCCCTAAAGTATCCAAACATG 58.643 40.000 0.00 0.00 0.00 3.21
3136 3161 6.576778 ACTAGCCCTAAAGTATCCAAACAT 57.423 37.500 0.00 0.00 0.00 2.71
3137 3162 6.013206 TCAACTAGCCCTAAAGTATCCAAACA 60.013 38.462 0.00 0.00 0.00 2.83
3138 3163 6.412214 TCAACTAGCCCTAAAGTATCCAAAC 58.588 40.000 0.00 0.00 0.00 2.93
3139 3164 6.630203 TCAACTAGCCCTAAAGTATCCAAA 57.370 37.500 0.00 0.00 0.00 3.28
3140 3165 5.396436 GCTCAACTAGCCCTAAAGTATCCAA 60.396 44.000 0.00 0.00 46.25 3.53
3141 3166 4.101119 GCTCAACTAGCCCTAAAGTATCCA 59.899 45.833 0.00 0.00 46.25 3.41
3142 3167 4.633175 GCTCAACTAGCCCTAAAGTATCC 58.367 47.826 0.00 0.00 46.25 2.59
3155 3180 3.618690 AGCTAGTTTGGGCTCAACTAG 57.381 47.619 21.86 21.86 37.49 2.57
3162 3187 1.560146 GGGTTAGAGCTAGTTTGGGCT 59.440 52.381 0.00 0.00 41.88 5.19
3163 3188 1.280998 TGGGTTAGAGCTAGTTTGGGC 59.719 52.381 0.00 0.00 0.00 5.36
3164 3189 3.933861 ATGGGTTAGAGCTAGTTTGGG 57.066 47.619 0.00 0.00 0.00 4.12
3165 3190 4.843728 TCAATGGGTTAGAGCTAGTTTGG 58.156 43.478 0.00 0.00 0.00 3.28
3166 3191 5.529060 GGATCAATGGGTTAGAGCTAGTTTG 59.471 44.000 0.00 0.00 0.00 2.93
3167 3192 5.191722 TGGATCAATGGGTTAGAGCTAGTTT 59.808 40.000 0.00 0.00 0.00 2.66
3168 3193 4.721776 TGGATCAATGGGTTAGAGCTAGTT 59.278 41.667 0.00 0.00 0.00 2.24
3169 3194 4.298626 TGGATCAATGGGTTAGAGCTAGT 58.701 43.478 0.00 0.00 0.00 2.57
3170 3195 4.963318 TGGATCAATGGGTTAGAGCTAG 57.037 45.455 0.00 0.00 0.00 3.42
3171 3196 5.045213 TGTTTGGATCAATGGGTTAGAGCTA 60.045 40.000 0.00 0.00 0.00 3.32
3172 3197 4.263905 TGTTTGGATCAATGGGTTAGAGCT 60.264 41.667 0.00 0.00 0.00 4.09
3173 3198 4.016444 TGTTTGGATCAATGGGTTAGAGC 58.984 43.478 0.00 0.00 0.00 4.09
3174 3199 5.068198 CCATGTTTGGATCAATGGGTTAGAG 59.932 44.000 0.00 0.00 46.92 2.43
3175 3200 4.955450 CCATGTTTGGATCAATGGGTTAGA 59.045 41.667 0.00 0.00 46.92 2.10
3176 3201 4.441913 GCCATGTTTGGATCAATGGGTTAG 60.442 45.833 0.00 0.00 46.92 2.34
3177 3202 3.450457 GCCATGTTTGGATCAATGGGTTA 59.550 43.478 0.00 0.00 46.92 2.85
3178 3203 2.236893 GCCATGTTTGGATCAATGGGTT 59.763 45.455 0.00 0.00 46.92 4.11
3179 3204 1.832998 GCCATGTTTGGATCAATGGGT 59.167 47.619 0.00 0.00 46.92 4.51
3180 3205 1.139455 GGCCATGTTTGGATCAATGGG 59.861 52.381 0.00 0.00 46.92 4.00
3181 3206 1.832366 TGGCCATGTTTGGATCAATGG 59.168 47.619 0.00 0.96 46.92 3.16
3182 3207 3.830744 ATGGCCATGTTTGGATCAATG 57.169 42.857 20.04 0.00 46.92 2.82
3183 3208 5.954153 TTTATGGCCATGTTTGGATCAAT 57.046 34.783 29.04 0.00 46.92 2.57
3184 3209 5.248020 ACTTTTATGGCCATGTTTGGATCAA 59.752 36.000 29.04 8.13 46.92 2.57
3185 3210 4.776837 ACTTTTATGGCCATGTTTGGATCA 59.223 37.500 29.04 1.03 46.92 2.92
3186 3211 5.343307 ACTTTTATGGCCATGTTTGGATC 57.657 39.130 29.04 0.00 46.92 3.36
3187 3212 6.440328 ACTTACTTTTATGGCCATGTTTGGAT 59.560 34.615 29.04 9.90 46.92 3.41
3188 3213 5.777732 ACTTACTTTTATGGCCATGTTTGGA 59.222 36.000 29.04 9.82 46.92 3.53
3189 3214 5.868801 CACTTACTTTTATGGCCATGTTTGG 59.131 40.000 29.04 15.66 46.66 3.28
3190 3215 6.686630 TCACTTACTTTTATGGCCATGTTTG 58.313 36.000 29.04 17.09 0.00 2.93
3191 3216 6.909550 TCACTTACTTTTATGGCCATGTTT 57.090 33.333 29.04 4.91 0.00 2.83
3192 3217 6.909550 TTCACTTACTTTTATGGCCATGTT 57.090 33.333 29.04 5.35 0.00 2.71
3193 3218 6.909550 TTTCACTTACTTTTATGGCCATGT 57.090 33.333 29.04 19.13 0.00 3.21
3194 3219 7.775120 AGATTTCACTTACTTTTATGGCCATG 58.225 34.615 29.04 13.91 0.00 3.66
3195 3220 7.615365 TGAGATTTCACTTACTTTTATGGCCAT 59.385 33.333 24.45 24.45 0.00 4.40
3196 3221 6.945435 TGAGATTTCACTTACTTTTATGGCCA 59.055 34.615 8.56 8.56 0.00 5.36
3197 3222 7.391148 TGAGATTTCACTTACTTTTATGGCC 57.609 36.000 0.00 0.00 0.00 5.36
3198 3223 9.860898 ATTTGAGATTTCACTTACTTTTATGGC 57.139 29.630 0.00 0.00 31.71 4.40
3268 3293 7.672240 TGATACCATTTGCTACGGTGAATATA 58.328 34.615 0.00 0.00 34.12 0.86
3278 3303 7.377766 TCTTCAACTTGATACCATTTGCTAC 57.622 36.000 0.00 0.00 0.00 3.58
3294 3319 6.465084 ACGAGTTTATAAAGCCTCTTCAACT 58.535 36.000 11.81 0.00 0.00 3.16
3348 3373 4.547406 AAAAGCACCGAGTTTAGTGAAC 57.453 40.909 0.00 0.00 36.01 3.18
3361 3386 7.048512 AGTACAGTAATGGAGATAAAAGCACC 58.951 38.462 0.00 0.00 0.00 5.01
3393 3418 9.509956 GGGCATGTGGTATAAACTGTATATTAA 57.490 33.333 0.00 0.00 0.00 1.40
3442 3467 7.678947 AGTTTGATTAGTTTCAGGACTCATG 57.321 36.000 0.00 0.00 0.00 3.07
3546 3571 9.582431 CGGAGTACAAGATAAATTCTGAAACTA 57.418 33.333 0.00 0.00 33.93 2.24
3553 3578 7.612677 AGTGAACGGAGTACAAGATAAATTCT 58.387 34.615 0.00 0.00 45.00 2.40
3643 3669 8.644216 TGGACTAGACACAAAGTGAAATAAGTA 58.356 33.333 3.88 0.00 36.96 2.24
3656 3682 9.778741 GGATATTTCAATATGGACTAGACACAA 57.221 33.333 0.00 0.00 31.96 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.