Multiple sequence alignment - TraesCS2A01G166200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G166200 chr2A 100.000 2261 0 0 1 2261 118490122 118487862 0.000000e+00 4176.0
1 TraesCS2A01G166200 chr2D 90.399 802 33 18 700 1469 117200361 117199572 0.000000e+00 1014.0
2 TraesCS2A01G166200 chr2D 90.747 616 45 2 49 652 556712580 556713195 0.000000e+00 811.0
3 TraesCS2A01G166200 chr2D 86.833 600 73 5 74 668 531873 532471 0.000000e+00 665.0
4 TraesCS2A01G166200 chr2D 76.884 597 101 26 92 670 563148215 563148792 1.010000e-78 303.0
5 TraesCS2A01G166200 chr2D 78.934 394 47 19 1635 2000 117198422 117198037 3.750000e-58 235.0
6 TraesCS2A01G166200 chr2D 76.093 343 60 12 92 420 70019579 70019913 2.320000e-35 159.0
7 TraesCS2A01G166200 chr2D 100.000 36 0 0 668 703 117213087 117213052 1.450000e-07 67.6
8 TraesCS2A01G166200 chr2B 86.086 884 57 30 668 1519 167499921 167499072 0.000000e+00 891.0
9 TraesCS2A01G166200 chr2B 75.448 391 28 31 1635 1999 167498950 167498602 6.550000e-26 128.0
10 TraesCS2A01G166200 chr7B 89.866 671 54 4 11 668 740002086 740002755 0.000000e+00 850.0
11 TraesCS2A01G166200 chr7B 77.104 594 102 19 93 668 721312160 721311583 1.690000e-81 313.0
12 TraesCS2A01G166200 chrUn 87.964 673 62 6 14 671 97121584 97120916 0.000000e+00 776.0
13 TraesCS2A01G166200 chr6A 87.229 462 43 5 221 670 467600652 467601109 1.550000e-141 512.0
14 TraesCS2A01G166200 chr1D 79.125 594 95 17 97 668 398480939 398481525 1.270000e-102 383.0
15 TraesCS2A01G166200 chr7D 77.041 588 111 14 96 668 484347403 484347981 1.300000e-82 316.0
16 TraesCS2A01G166200 chr7D 77.213 531 105 13 153 678 566575098 566574579 1.700000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G166200 chr2A 118487862 118490122 2260 True 4176.0 4176 100.0000 1 2261 1 chr2A.!!$R1 2260
1 TraesCS2A01G166200 chr2D 556712580 556713195 615 False 811.0 811 90.7470 49 652 1 chr2D.!!$F3 603
2 TraesCS2A01G166200 chr2D 531873 532471 598 False 665.0 665 86.8330 74 668 1 chr2D.!!$F1 594
3 TraesCS2A01G166200 chr2D 117198037 117200361 2324 True 624.5 1014 84.6665 700 2000 2 chr2D.!!$R2 1300
4 TraesCS2A01G166200 chr2D 563148215 563148792 577 False 303.0 303 76.8840 92 670 1 chr2D.!!$F4 578
5 TraesCS2A01G166200 chr2B 167498602 167499921 1319 True 509.5 891 80.7670 668 1999 2 chr2B.!!$R1 1331
6 TraesCS2A01G166200 chr7B 740002086 740002755 669 False 850.0 850 89.8660 11 668 1 chr7B.!!$F1 657
7 TraesCS2A01G166200 chr7B 721311583 721312160 577 True 313.0 313 77.1040 93 668 1 chr7B.!!$R1 575
8 TraesCS2A01G166200 chrUn 97120916 97121584 668 True 776.0 776 87.9640 14 671 1 chrUn.!!$R1 657
9 TraesCS2A01G166200 chr1D 398480939 398481525 586 False 383.0 383 79.1250 97 668 1 chr1D.!!$F1 571
10 TraesCS2A01G166200 chr7D 484347403 484347981 578 False 316.0 316 77.0410 96 668 1 chr7D.!!$F1 572
11 TraesCS2A01G166200 chr7D 566574579 566575098 519 True 296.0 296 77.2130 153 678 1 chr7D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 815 0.788995 GATCGATGCGATGCTCAAGG 59.211 55.0 0.54 0.0 47.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 3176 0.036952 CGTGTGCCTTCATCTCAGGT 60.037 55.0 0.0 0.0 33.4 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.423539 AATAGTTGCCTGCTCTTGTCA 57.576 42.857 0.00 0.00 0.00 3.58
63 64 1.956477 GCCAACATGGTCTTCACTTGT 59.044 47.619 0.00 0.00 40.46 3.16
177 183 3.181499 GCTTCTCAAGTACCGATCTCGAA 60.181 47.826 0.22 0.00 43.02 3.71
180 186 4.008330 TCTCAAGTACCGATCTCGAACTT 58.992 43.478 11.86 11.86 42.08 2.66
192 199 2.038033 TCTCGAACTTCGGGGTGAAAAT 59.962 45.455 11.15 0.00 41.53 1.82
384 404 5.470098 GTGTTGCTATTGGAGAACTTCTTCA 59.530 40.000 0.00 0.00 27.95 3.02
472 500 7.826260 TGTTTTGATCACTTTGGAGTTTTTC 57.174 32.000 0.00 0.00 32.54 2.29
473 501 7.610865 TGTTTTGATCACTTTGGAGTTTTTCT 58.389 30.769 0.00 0.00 32.54 2.52
518 552 6.845908 AGGCATAACTTGGATCTTGTATGAT 58.154 36.000 0.00 0.00 0.00 2.45
623 663 4.947388 GCTCATTGTGTTTGTATCCCCTTA 59.053 41.667 0.00 0.00 0.00 2.69
626 666 7.284489 GCTCATTGTGTTTGTATCCCCTTAATA 59.716 37.037 0.00 0.00 0.00 0.98
698 738 6.980051 AAATAGTTAGGGTCAAACGATGTC 57.020 37.500 0.00 0.00 32.00 3.06
770 815 0.788995 GATCGATGCGATGCTCAAGG 59.211 55.000 0.54 0.00 47.00 3.61
788 833 4.588528 TCAAGGCTGAAATTTACCTTTGCT 59.411 37.500 14.07 0.00 40.54 3.91
810 855 2.420058 CCCCCACCAATAACTGAGAC 57.580 55.000 0.00 0.00 0.00 3.36
860 909 2.621338 CAGCCTGCAGATAGAAACGAA 58.379 47.619 17.39 0.00 0.00 3.85
861 910 3.201290 CAGCCTGCAGATAGAAACGAAT 58.799 45.455 17.39 0.00 0.00 3.34
862 911 4.371786 CAGCCTGCAGATAGAAACGAATA 58.628 43.478 17.39 0.00 0.00 1.75
863 912 4.811024 CAGCCTGCAGATAGAAACGAATAA 59.189 41.667 17.39 0.00 0.00 1.40
864 913 5.294306 CAGCCTGCAGATAGAAACGAATAAA 59.706 40.000 17.39 0.00 0.00 1.40
865 914 5.294552 AGCCTGCAGATAGAAACGAATAAAC 59.705 40.000 17.39 0.00 0.00 2.01
866 915 5.294552 GCCTGCAGATAGAAACGAATAAACT 59.705 40.000 17.39 0.00 0.00 2.66
878 927 8.378421 AGAAACGAATAAACTATAAAGTCACGC 58.622 33.333 0.00 0.00 33.75 5.34
929 982 4.421479 AGGCACGACCGCGAGAAG 62.421 66.667 8.23 0.00 46.52 2.85
943 996 1.599606 GAGAAGCTCGGCAGTCTCCA 61.600 60.000 13.70 0.00 36.58 3.86
974 1028 4.038642 GGACTAGATAAGCTGGTTCTGAGG 59.961 50.000 0.00 0.00 38.58 3.86
980 1034 5.721960 AGATAAGCTGGTTCTGAGGTTCTAA 59.278 40.000 0.00 0.00 33.35 2.10
987 1041 4.080243 TGGTTCTGAGGTTCTAAACACCAA 60.080 41.667 0.00 0.00 36.67 3.67
992 1046 7.074653 TCTGAGGTTCTAAACACCAAATAGT 57.925 36.000 0.00 0.00 36.67 2.12
1038 1092 4.293648 TGTGCGTGGACGGTGGAG 62.294 66.667 0.71 0.00 40.23 3.86
1313 1393 0.461870 TGCCCAGTATCGTGTGATGC 60.462 55.000 0.00 0.00 37.47 3.91
1329 1409 2.226200 TGATGCGTTCAACTTGACATGG 59.774 45.455 0.00 0.00 0.00 3.66
1330 1410 1.960417 TGCGTTCAACTTGACATGGA 58.040 45.000 0.00 0.00 0.00 3.41
1332 1412 2.290367 TGCGTTCAACTTGACATGGAAG 59.710 45.455 0.00 1.19 0.00 3.46
1349 1436 6.995091 ACATGGAAGCTTCTCCTGAATAATAC 59.005 38.462 25.05 5.12 36.35 1.89
1350 1437 6.814954 TGGAAGCTTCTCCTGAATAATACT 57.185 37.500 25.05 0.00 36.35 2.12
1351 1438 7.914427 TGGAAGCTTCTCCTGAATAATACTA 57.086 36.000 25.05 0.00 36.35 1.82
1352 1439 8.497910 TGGAAGCTTCTCCTGAATAATACTAT 57.502 34.615 25.05 0.00 36.35 2.12
1353 1440 8.370940 TGGAAGCTTCTCCTGAATAATACTATG 58.629 37.037 25.05 0.00 36.35 2.23
1354 1441 8.371699 GGAAGCTTCTCCTGAATAATACTATGT 58.628 37.037 25.05 0.00 32.21 2.29
1355 1442 9.202273 GAAGCTTCTCCTGAATAATACTATGTG 57.798 37.037 19.44 0.00 0.00 3.21
1356 1443 8.256356 AGCTTCTCCTGAATAATACTATGTGT 57.744 34.615 0.00 0.00 0.00 3.72
1357 1444 9.368416 AGCTTCTCCTGAATAATACTATGTGTA 57.632 33.333 0.00 0.00 35.37 2.90
1358 1445 9.982651 GCTTCTCCTGAATAATACTATGTGTAA 57.017 33.333 0.00 0.00 34.45 2.41
1377 1464 7.657336 TGTGTAAAAATCCAGGAGAATTTGTC 58.343 34.615 0.00 0.00 27.82 3.18
1437 1524 3.976942 GCAGTTGCTTAATTGTGAGTGTG 59.023 43.478 0.00 0.00 38.21 3.82
1448 1535 3.097877 TGTGAGTGTGTCTGCTGTAAG 57.902 47.619 0.00 0.00 0.00 2.34
1513 2158 0.318869 TGGCTTGCGCATTTTGACTG 60.319 50.000 12.75 0.00 38.10 3.51
1519 2572 4.868195 GCATTTTGACTGCGGACC 57.132 55.556 0.00 0.00 0.00 4.46
1520 2573 2.257353 GCATTTTGACTGCGGACCT 58.743 52.632 0.00 0.00 0.00 3.85
1521 2574 0.598065 GCATTTTGACTGCGGACCTT 59.402 50.000 0.00 0.00 0.00 3.50
1522 2575 1.401539 GCATTTTGACTGCGGACCTTC 60.402 52.381 0.00 0.00 0.00 3.46
1523 2576 1.135972 CATTTTGACTGCGGACCTTCG 60.136 52.381 0.00 0.00 0.00 3.79
1531 2584 4.735132 CGGACCTTCGCTGCGGAA 62.735 66.667 23.03 13.57 0.00 4.30
1532 2585 3.119096 GGACCTTCGCTGCGGAAC 61.119 66.667 23.03 7.69 0.00 3.62
1549 2602 4.522722 GGAACGGGATCCTCTAACATAG 57.477 50.000 12.58 0.00 36.50 2.23
1550 2603 4.150359 GGAACGGGATCCTCTAACATAGA 58.850 47.826 12.58 0.00 36.50 1.98
1565 2618 7.033791 TCTAACATAGAGAAGCAAAGTAACCG 58.966 38.462 0.00 0.00 0.00 4.44
1566 2619 5.148651 ACATAGAGAAGCAAAGTAACCGT 57.851 39.130 0.00 0.00 0.00 4.83
1595 2660 3.391665 CTGGGGATGGCCACGTCTC 62.392 68.421 8.16 1.39 42.06 3.36
1607 2672 1.423395 CACGTCTCCTTTGACTGCTC 58.577 55.000 0.00 0.00 35.00 4.26
1615 2680 1.005037 TTTGACTGCTCGATGCCGT 60.005 52.632 4.21 4.21 41.78 5.68
1629 2694 1.003959 GCCGTAACCGTACCCCAAA 60.004 57.895 0.00 0.00 0.00 3.28
1630 2695 0.605050 GCCGTAACCGTACCCCAAAA 60.605 55.000 0.00 0.00 0.00 2.44
1633 2698 2.819019 CCGTAACCGTACCCCAAAATTT 59.181 45.455 0.00 0.00 0.00 1.82
1678 2797 7.613585 TGCATCTTTTTGTTGATGGATTACAT 58.386 30.769 0.00 0.00 44.18 2.29
1696 2820 2.241722 CATTTGTTTTGCCTAGTCGCG 58.758 47.619 0.00 0.00 0.00 5.87
1720 2844 2.941720 CCTCCAGCATTTTAGCTCAGTC 59.058 50.000 0.00 0.00 44.54 3.51
1728 2852 3.299340 TTTTAGCTCAGTCGTCCACTC 57.701 47.619 0.00 0.00 30.26 3.51
1738 2862 2.554893 AGTCGTCCACTCTGAAGTTCTC 59.445 50.000 4.17 0.00 31.71 2.87
1752 2876 2.919228 AGTTCTCACAAGTGTCCCAAC 58.081 47.619 0.00 0.49 0.00 3.77
1758 2882 0.544697 ACAAGTGTCCCAACGGAACT 59.455 50.000 0.00 0.00 40.92 3.01
1760 2884 0.544697 AAGTGTCCCAACGGAACTGT 59.455 50.000 0.00 0.00 40.92 3.55
1761 2885 0.106149 AGTGTCCCAACGGAACTGTC 59.894 55.000 0.00 0.00 40.92 3.51
1762 2886 0.179067 GTGTCCCAACGGAACTGTCA 60.179 55.000 0.00 0.00 40.92 3.58
1763 2887 0.542333 TGTCCCAACGGAACTGTCAA 59.458 50.000 0.00 0.00 40.92 3.18
1764 2888 1.226746 GTCCCAACGGAACTGTCAAG 58.773 55.000 0.00 0.00 40.92 3.02
1765 2889 0.834612 TCCCAACGGAACTGTCAAGT 59.165 50.000 0.00 0.00 38.71 3.16
1766 2890 1.202604 TCCCAACGGAACTGTCAAGTC 60.203 52.381 0.00 0.00 34.77 3.01
1769 2893 3.493699 CCCAACGGAACTGTCAAGTCTTA 60.494 47.826 0.00 0.00 34.77 2.10
1770 2894 3.741344 CCAACGGAACTGTCAAGTCTTAG 59.259 47.826 0.00 0.00 34.77 2.18
1771 2895 3.662247 ACGGAACTGTCAAGTCTTAGG 57.338 47.619 0.00 0.00 34.77 2.69
1778 2903 5.398603 ACTGTCAAGTCTTAGGACATGAG 57.601 43.478 12.55 5.73 46.33 2.90
1788 2913 1.517257 GGACATGAGCCTGACGACG 60.517 63.158 0.00 0.00 0.00 5.12
1793 2918 1.065551 CATGAGCCTGACGACGTATCA 59.934 52.381 0.00 1.18 0.00 2.15
1804 2929 4.926832 TGACGACGTATCATCAACAAATGT 59.073 37.500 0.00 0.00 0.00 2.71
1822 2947 7.464358 ACAAATGTTATTTCACGATGCTACTC 58.536 34.615 0.00 0.00 0.00 2.59
1828 2956 1.177401 TCACGATGCTACTCTGCTGT 58.823 50.000 0.00 0.00 0.00 4.40
1842 2970 4.092771 TCTGCTGTACAACGATACACTC 57.907 45.455 0.00 0.00 31.72 3.51
1843 2971 3.756963 TCTGCTGTACAACGATACACTCT 59.243 43.478 0.00 0.00 31.72 3.24
1845 2973 3.119602 TGCTGTACAACGATACACTCTCC 60.120 47.826 0.00 0.00 31.72 3.71
1854 2982 5.923733 ACGATACACTCTCCTTCAAGAAT 57.076 39.130 0.00 0.00 0.00 2.40
1855 2983 6.287589 ACGATACACTCTCCTTCAAGAATT 57.712 37.500 0.00 0.00 0.00 2.17
1856 2984 7.406031 ACGATACACTCTCCTTCAAGAATTA 57.594 36.000 0.00 0.00 0.00 1.40
1857 2985 8.012957 ACGATACACTCTCCTTCAAGAATTAT 57.987 34.615 0.00 0.00 0.00 1.28
1858 2986 8.478877 ACGATACACTCTCCTTCAAGAATTATT 58.521 33.333 0.00 0.00 0.00 1.40
1859 2987 8.973378 CGATACACTCTCCTTCAAGAATTATTC 58.027 37.037 0.00 0.00 0.00 1.75
1860 2988 8.879342 ATACACTCTCCTTCAAGAATTATTCG 57.121 34.615 0.00 0.00 34.02 3.34
1861 2989 6.702329 ACACTCTCCTTCAAGAATTATTCGT 58.298 36.000 0.00 0.00 34.02 3.85
1862 2990 7.837863 ACACTCTCCTTCAAGAATTATTCGTA 58.162 34.615 0.00 0.00 34.02 3.43
1863 2991 7.760340 ACACTCTCCTTCAAGAATTATTCGTAC 59.240 37.037 0.00 0.00 34.02 3.67
1864 2992 7.222999 CACTCTCCTTCAAGAATTATTCGTACC 59.777 40.741 0.00 0.00 34.02 3.34
1865 2993 7.093465 ACTCTCCTTCAAGAATTATTCGTACCA 60.093 37.037 0.00 0.00 34.02 3.25
1866 2994 7.617225 TCTCCTTCAAGAATTATTCGTACCAA 58.383 34.615 0.00 0.00 34.02 3.67
1867 2995 8.098286 TCTCCTTCAAGAATTATTCGTACCAAA 58.902 33.333 0.00 0.00 34.02 3.28
1868 2996 8.036273 TCCTTCAAGAATTATTCGTACCAAAC 57.964 34.615 0.00 0.00 34.02 2.93
1869 2997 7.662258 TCCTTCAAGAATTATTCGTACCAAACA 59.338 33.333 0.00 0.00 34.02 2.83
1870 2998 8.458843 CCTTCAAGAATTATTCGTACCAAACAT 58.541 33.333 0.00 0.00 34.02 2.71
1876 3012 9.403583 AGAATTATTCGTACCAAACATACCATT 57.596 29.630 0.00 0.00 34.02 3.16
1877 3013 9.445786 GAATTATTCGTACCAAACATACCATTG 57.554 33.333 0.00 0.00 0.00 2.82
1878 3014 7.925043 TTATTCGTACCAAACATACCATTGT 57.075 32.000 0.00 0.00 0.00 2.71
1882 3018 7.925043 TCGTACCAAACATACCATTGTATTT 57.075 32.000 0.00 0.00 35.46 1.40
1899 3035 5.556915 TGTATTTCACAAGAGGTAGGGTTG 58.443 41.667 0.00 0.00 32.95 3.77
1927 3063 7.223387 GCAATTATTTCCTGCATACTGAAAAGG 59.777 37.037 0.00 0.00 36.09 3.11
1934 3070 1.164411 CATACTGAAAAGGCACCGCA 58.836 50.000 0.00 0.00 0.00 5.69
1937 3073 1.034838 ACTGAAAAGGCACCGCACAA 61.035 50.000 0.00 0.00 0.00 3.33
1938 3074 0.314935 CTGAAAAGGCACCGCACAAT 59.685 50.000 0.00 0.00 0.00 2.71
1939 3075 1.539388 CTGAAAAGGCACCGCACAATA 59.461 47.619 0.00 0.00 0.00 1.90
1940 3076 2.164219 CTGAAAAGGCACCGCACAATAT 59.836 45.455 0.00 0.00 0.00 1.28
1941 3077 2.094803 TGAAAAGGCACCGCACAATATG 60.095 45.455 0.00 0.00 0.00 1.78
1942 3078 1.832883 AAAGGCACCGCACAATATGA 58.167 45.000 0.00 0.00 0.00 2.15
1943 3079 1.832883 AAGGCACCGCACAATATGAA 58.167 45.000 0.00 0.00 0.00 2.57
1946 3082 1.094785 GCACCGCACAATATGAAGGT 58.905 50.000 0.00 0.00 40.28 3.50
1983 3144 1.555075 GAGCCCACATCCACAACTCTA 59.445 52.381 0.00 0.00 0.00 2.43
2000 3161 3.118629 ACTCTAATGATCTTCGCCTTGCA 60.119 43.478 0.00 0.00 0.00 4.08
2001 3162 3.198068 TCTAATGATCTTCGCCTTGCAC 58.802 45.455 0.00 0.00 0.00 4.57
2002 3163 1.825090 AATGATCTTCGCCTTGCACA 58.175 45.000 0.00 0.00 0.00 4.57
2003 3164 1.376543 ATGATCTTCGCCTTGCACAG 58.623 50.000 0.00 0.00 0.00 3.66
2004 3165 0.035317 TGATCTTCGCCTTGCACAGT 59.965 50.000 0.00 0.00 0.00 3.55
2005 3166 1.160137 GATCTTCGCCTTGCACAGTT 58.840 50.000 0.00 0.00 0.00 3.16
2006 3167 1.537202 GATCTTCGCCTTGCACAGTTT 59.463 47.619 0.00 0.00 0.00 2.66
2007 3168 1.388547 TCTTCGCCTTGCACAGTTTT 58.611 45.000 0.00 0.00 0.00 2.43
2008 3169 1.065401 TCTTCGCCTTGCACAGTTTTG 59.935 47.619 0.00 0.00 0.00 2.44
2009 3170 0.102120 TTCGCCTTGCACAGTTTTGG 59.898 50.000 0.00 0.00 0.00 3.28
2010 3171 1.300080 CGCCTTGCACAGTTTTGGG 60.300 57.895 0.00 0.00 0.00 4.12
2027 3188 3.165606 GGCACCACCTGAGATGAAG 57.834 57.895 0.00 0.00 34.51 3.02
2028 3189 0.393537 GGCACCACCTGAGATGAAGG 60.394 60.000 0.00 0.00 40.93 3.46
2029 3190 1.028868 GCACCACCTGAGATGAAGGC 61.029 60.000 0.00 0.00 38.48 4.35
2030 3191 0.325933 CACCACCTGAGATGAAGGCA 59.674 55.000 0.00 0.00 38.48 4.75
2031 3192 0.326264 ACCACCTGAGATGAAGGCAC 59.674 55.000 0.00 0.00 38.48 5.01
2032 3193 0.325933 CCACCTGAGATGAAGGCACA 59.674 55.000 0.00 0.00 38.48 4.57
2033 3194 1.446907 CACCTGAGATGAAGGCACAC 58.553 55.000 0.00 0.00 38.48 3.82
2034 3195 0.036952 ACCTGAGATGAAGGCACACG 60.037 55.000 0.00 0.00 38.48 4.49
2035 3196 0.742281 CCTGAGATGAAGGCACACGG 60.742 60.000 0.00 0.00 0.00 4.94
2036 3197 0.742281 CTGAGATGAAGGCACACGGG 60.742 60.000 0.00 0.00 0.00 5.28
2037 3198 1.191489 TGAGATGAAGGCACACGGGA 61.191 55.000 0.00 0.00 0.00 5.14
2038 3199 0.741221 GAGATGAAGGCACACGGGAC 60.741 60.000 0.00 0.00 0.00 4.46
2064 3225 2.838386 CAGTTATGCGCTGCTTTCAT 57.162 45.000 9.73 1.35 0.00 2.57
2065 3226 3.141002 CAGTTATGCGCTGCTTTCATT 57.859 42.857 9.73 0.00 0.00 2.57
2066 3227 2.850060 CAGTTATGCGCTGCTTTCATTG 59.150 45.455 9.73 0.00 0.00 2.82
2067 3228 1.585214 GTTATGCGCTGCTTTCATTGC 59.415 47.619 9.73 0.00 0.00 3.56
2070 3231 4.539152 CGCTGCTTTCATTGCGTT 57.461 50.000 0.00 0.00 42.93 4.84
2071 3232 3.674225 CGCTGCTTTCATTGCGTTA 57.326 47.368 0.00 0.00 42.93 3.18
2072 3233 1.962412 CGCTGCTTTCATTGCGTTAA 58.038 45.000 0.00 0.00 42.93 2.01
2073 3234 1.906966 CGCTGCTTTCATTGCGTTAAG 59.093 47.619 0.00 0.00 42.93 1.85
2074 3235 2.412716 CGCTGCTTTCATTGCGTTAAGA 60.413 45.455 0.00 0.00 42.93 2.10
2075 3236 3.564511 GCTGCTTTCATTGCGTTAAGAA 58.435 40.909 0.00 0.00 0.00 2.52
2076 3237 3.980775 GCTGCTTTCATTGCGTTAAGAAA 59.019 39.130 0.00 0.00 0.00 2.52
2077 3238 4.089065 GCTGCTTTCATTGCGTTAAGAAAG 59.911 41.667 14.11 14.11 45.92 2.62
2078 3239 4.545610 TGCTTTCATTGCGTTAAGAAAGG 58.454 39.130 17.65 6.33 44.28 3.11
2079 3240 4.277174 TGCTTTCATTGCGTTAAGAAAGGA 59.723 37.500 17.65 14.36 44.28 3.36
2080 3241 5.048083 TGCTTTCATTGCGTTAAGAAAGGAT 60.048 36.000 17.65 0.00 44.28 3.24
2081 3242 6.150307 TGCTTTCATTGCGTTAAGAAAGGATA 59.850 34.615 17.65 0.00 44.28 2.59
2082 3243 6.688813 GCTTTCATTGCGTTAAGAAAGGATAG 59.311 38.462 17.65 4.94 44.28 2.08
2083 3244 7.414098 GCTTTCATTGCGTTAAGAAAGGATAGA 60.414 37.037 17.65 0.00 44.28 1.98
2084 3245 7.915293 TTCATTGCGTTAAGAAAGGATAGAA 57.085 32.000 0.00 0.00 26.84 2.10
2085 3246 7.303634 TCATTGCGTTAAGAAAGGATAGAAC 57.696 36.000 0.00 0.00 0.00 3.01
2086 3247 6.876789 TCATTGCGTTAAGAAAGGATAGAACA 59.123 34.615 0.00 0.00 0.00 3.18
2087 3248 6.721571 TTGCGTTAAGAAAGGATAGAACAG 57.278 37.500 0.00 0.00 0.00 3.16
2088 3249 5.790593 TGCGTTAAGAAAGGATAGAACAGT 58.209 37.500 0.00 0.00 0.00 3.55
2089 3250 6.228258 TGCGTTAAGAAAGGATAGAACAGTT 58.772 36.000 0.00 0.00 0.00 3.16
2090 3251 7.380536 TGCGTTAAGAAAGGATAGAACAGTTA 58.619 34.615 0.00 0.00 0.00 2.24
2091 3252 8.038944 TGCGTTAAGAAAGGATAGAACAGTTAT 58.961 33.333 0.00 0.00 0.00 1.89
2092 3253 9.525409 GCGTTAAGAAAGGATAGAACAGTTATA 57.475 33.333 0.00 0.00 0.00 0.98
2107 3268 8.896744 AGAACAGTTATACAATTGATCACATGG 58.103 33.333 13.59 2.40 29.11 3.66
2108 3269 7.031226 ACAGTTATACAATTGATCACATGGC 57.969 36.000 13.59 0.00 0.00 4.40
2109 3270 6.830324 ACAGTTATACAATTGATCACATGGCT 59.170 34.615 13.59 0.00 0.00 4.75
2110 3271 7.136772 CAGTTATACAATTGATCACATGGCTG 58.863 38.462 13.59 4.90 0.00 4.85
2111 3272 6.263842 AGTTATACAATTGATCACATGGCTGG 59.736 38.462 13.59 0.00 0.00 4.85
2112 3273 3.090210 ACAATTGATCACATGGCTGGA 57.910 42.857 13.59 0.00 0.00 3.86
2113 3274 3.433343 ACAATTGATCACATGGCTGGAA 58.567 40.909 13.59 0.00 0.00 3.53
2114 3275 3.194116 ACAATTGATCACATGGCTGGAAC 59.806 43.478 13.59 0.00 0.00 3.62
2115 3276 2.583024 TTGATCACATGGCTGGAACA 57.417 45.000 0.00 0.00 0.00 3.18
2116 3277 2.583024 TGATCACATGGCTGGAACAA 57.417 45.000 0.00 0.00 38.70 2.83
2117 3278 2.874014 TGATCACATGGCTGGAACAAA 58.126 42.857 0.00 0.00 38.70 2.83
2118 3279 2.557924 TGATCACATGGCTGGAACAAAC 59.442 45.455 0.00 0.00 38.70 2.93
2119 3280 2.363306 TCACATGGCTGGAACAAACT 57.637 45.000 0.00 0.00 38.70 2.66
2120 3281 1.955778 TCACATGGCTGGAACAAACTG 59.044 47.619 0.00 0.00 38.70 3.16
2121 3282 1.955778 CACATGGCTGGAACAAACTGA 59.044 47.619 0.00 0.00 38.70 3.41
2122 3283 2.361757 CACATGGCTGGAACAAACTGAA 59.638 45.455 0.00 0.00 38.70 3.02
2123 3284 2.624838 ACATGGCTGGAACAAACTGAAG 59.375 45.455 0.00 0.00 38.70 3.02
2124 3285 2.727123 TGGCTGGAACAAACTGAAGA 57.273 45.000 0.00 0.00 38.70 2.87
2125 3286 3.011566 TGGCTGGAACAAACTGAAGAA 57.988 42.857 0.00 0.00 38.70 2.52
2126 3287 3.360867 TGGCTGGAACAAACTGAAGAAA 58.639 40.909 0.00 0.00 38.70 2.52
2127 3288 3.766591 TGGCTGGAACAAACTGAAGAAAA 59.233 39.130 0.00 0.00 38.70 2.29
2128 3289 4.405358 TGGCTGGAACAAACTGAAGAAAAT 59.595 37.500 0.00 0.00 38.70 1.82
2129 3290 5.596361 TGGCTGGAACAAACTGAAGAAAATA 59.404 36.000 0.00 0.00 38.70 1.40
2130 3291 6.097554 TGGCTGGAACAAACTGAAGAAAATAA 59.902 34.615 0.00 0.00 38.70 1.40
2131 3292 6.983890 GGCTGGAACAAACTGAAGAAAATAAA 59.016 34.615 0.00 0.00 38.70 1.40
2132 3293 7.494298 GGCTGGAACAAACTGAAGAAAATAAAA 59.506 33.333 0.00 0.00 38.70 1.52
2133 3294 8.878769 GCTGGAACAAACTGAAGAAAATAAAAA 58.121 29.630 0.00 0.00 38.70 1.94
2135 3296 9.712305 TGGAACAAACTGAAGAAAATAAAAACA 57.288 25.926 0.00 0.00 31.92 2.83
2137 3298 9.689075 GAACAAACTGAAGAAAATAAAAACAGC 57.311 29.630 0.00 0.00 0.00 4.40
2138 3299 8.196802 ACAAACTGAAGAAAATAAAAACAGCC 57.803 30.769 0.00 0.00 0.00 4.85
2139 3300 7.821846 ACAAACTGAAGAAAATAAAAACAGCCA 59.178 29.630 0.00 0.00 0.00 4.75
2140 3301 8.663911 CAAACTGAAGAAAATAAAAACAGCCAA 58.336 29.630 0.00 0.00 0.00 4.52
2141 3302 8.424274 AACTGAAGAAAATAAAAACAGCCAAG 57.576 30.769 0.00 0.00 0.00 3.61
2142 3303 6.986231 ACTGAAGAAAATAAAAACAGCCAAGG 59.014 34.615 0.00 0.00 0.00 3.61
2143 3304 7.118496 TGAAGAAAATAAAAACAGCCAAGGA 57.882 32.000 0.00 0.00 0.00 3.36
2144 3305 6.983890 TGAAGAAAATAAAAACAGCCAAGGAC 59.016 34.615 0.00 0.00 0.00 3.85
2145 3306 5.853936 AGAAAATAAAAACAGCCAAGGACC 58.146 37.500 0.00 0.00 0.00 4.46
2146 3307 5.365314 AGAAAATAAAAACAGCCAAGGACCA 59.635 36.000 0.00 0.00 0.00 4.02
2147 3308 5.622346 AAATAAAAACAGCCAAGGACCAA 57.378 34.783 0.00 0.00 0.00 3.67
2148 3309 2.979814 AAAAACAGCCAAGGACCAAC 57.020 45.000 0.00 0.00 0.00 3.77
2149 3310 1.859302 AAAACAGCCAAGGACCAACA 58.141 45.000 0.00 0.00 0.00 3.33
2150 3311 1.402787 AAACAGCCAAGGACCAACAG 58.597 50.000 0.00 0.00 0.00 3.16
2151 3312 1.109323 AACAGCCAAGGACCAACAGC 61.109 55.000 0.00 0.00 0.00 4.40
2152 3313 1.529010 CAGCCAAGGACCAACAGCA 60.529 57.895 0.00 0.00 0.00 4.41
2153 3314 1.228367 AGCCAAGGACCAACAGCAG 60.228 57.895 0.00 0.00 0.00 4.24
2154 3315 2.924105 GCCAAGGACCAACAGCAGC 61.924 63.158 0.00 0.00 0.00 5.25
2155 3316 1.529010 CCAAGGACCAACAGCAGCA 60.529 57.895 0.00 0.00 0.00 4.41
2156 3317 1.108727 CCAAGGACCAACAGCAGCAA 61.109 55.000 0.00 0.00 0.00 3.91
2157 3318 0.746063 CAAGGACCAACAGCAGCAAA 59.254 50.000 0.00 0.00 0.00 3.68
2158 3319 1.136695 CAAGGACCAACAGCAGCAAAA 59.863 47.619 0.00 0.00 0.00 2.44
2159 3320 1.035139 AGGACCAACAGCAGCAAAAG 58.965 50.000 0.00 0.00 0.00 2.27
2160 3321 0.746659 GGACCAACAGCAGCAAAAGT 59.253 50.000 0.00 0.00 0.00 2.66
2161 3322 1.136891 GGACCAACAGCAGCAAAAGTT 59.863 47.619 0.00 0.00 0.00 2.66
2162 3323 2.195922 GACCAACAGCAGCAAAAGTTG 58.804 47.619 11.08 11.08 40.63 3.16
2163 3324 1.824230 ACCAACAGCAGCAAAAGTTGA 59.176 42.857 16.77 0.00 42.87 3.18
2164 3325 2.195922 CCAACAGCAGCAAAAGTTGAC 58.804 47.619 16.77 0.00 42.87 3.18
2165 3326 1.847999 CAACAGCAGCAAAAGTTGACG 59.152 47.619 12.15 0.00 42.87 4.35
2166 3327 0.248621 ACAGCAGCAAAAGTTGACGC 60.249 50.000 0.00 0.00 0.00 5.19
2167 3328 0.248580 CAGCAGCAAAAGTTGACGCA 60.249 50.000 0.00 0.00 0.00 5.24
2168 3329 0.670162 AGCAGCAAAAGTTGACGCAT 59.330 45.000 0.00 0.00 0.00 4.73
2169 3330 1.067516 AGCAGCAAAAGTTGACGCATT 59.932 42.857 0.00 0.00 0.00 3.56
2170 3331 2.293122 AGCAGCAAAAGTTGACGCATTA 59.707 40.909 0.00 0.00 0.00 1.90
2171 3332 2.405025 GCAGCAAAAGTTGACGCATTAC 59.595 45.455 0.00 0.00 0.00 1.89
2172 3333 3.626977 CAGCAAAAGTTGACGCATTACA 58.373 40.909 0.00 0.00 0.00 2.41
2173 3334 3.665409 CAGCAAAAGTTGACGCATTACAG 59.335 43.478 0.00 0.00 0.00 2.74
2174 3335 2.405025 GCAAAAGTTGACGCATTACAGC 59.595 45.455 0.00 0.00 0.00 4.40
2175 3336 3.626977 CAAAAGTTGACGCATTACAGCA 58.373 40.909 0.00 0.00 0.00 4.41
2176 3337 3.980646 AAAGTTGACGCATTACAGCAA 57.019 38.095 0.00 0.00 0.00 3.91
2177 3338 3.980646 AAGTTGACGCATTACAGCAAA 57.019 38.095 0.00 0.00 0.00 3.68
2178 3339 4.503741 AAGTTGACGCATTACAGCAAAT 57.496 36.364 0.00 0.00 0.00 2.32
2179 3340 4.503741 AGTTGACGCATTACAGCAAATT 57.496 36.364 0.00 0.00 0.00 1.82
2180 3341 5.621197 AGTTGACGCATTACAGCAAATTA 57.379 34.783 0.00 0.00 0.00 1.40
2181 3342 5.631026 AGTTGACGCATTACAGCAAATTAG 58.369 37.500 0.00 0.00 0.00 1.73
2182 3343 5.181245 AGTTGACGCATTACAGCAAATTAGT 59.819 36.000 0.00 0.00 0.00 2.24
2183 3344 5.216566 TGACGCATTACAGCAAATTAGTC 57.783 39.130 0.00 0.00 0.00 2.59
2184 3345 4.693095 TGACGCATTACAGCAAATTAGTCA 59.307 37.500 0.00 0.00 33.71 3.41
2185 3346 5.163864 TGACGCATTACAGCAAATTAGTCAG 60.164 40.000 0.00 0.00 32.38 3.51
2186 3347 4.094887 ACGCATTACAGCAAATTAGTCAGG 59.905 41.667 0.00 0.00 0.00 3.86
2187 3348 4.496341 CGCATTACAGCAAATTAGTCAGGG 60.496 45.833 0.00 0.00 0.00 4.45
2188 3349 4.734695 GCATTACAGCAAATTAGTCAGGGC 60.735 45.833 0.00 0.00 0.00 5.19
2189 3350 1.453155 ACAGCAAATTAGTCAGGGCG 58.547 50.000 0.00 0.00 0.00 6.13
2190 3351 1.271379 ACAGCAAATTAGTCAGGGCGT 60.271 47.619 0.00 0.00 0.00 5.68
2191 3352 1.131126 CAGCAAATTAGTCAGGGCGTG 59.869 52.381 0.00 0.00 0.00 5.34
2192 3353 1.165270 GCAAATTAGTCAGGGCGTGT 58.835 50.000 7.12 0.00 0.00 4.49
2193 3354 1.135689 GCAAATTAGTCAGGGCGTGTG 60.136 52.381 7.12 0.00 0.00 3.82
2194 3355 2.422597 CAAATTAGTCAGGGCGTGTGA 58.577 47.619 7.12 0.00 0.00 3.58
2195 3356 3.009723 CAAATTAGTCAGGGCGTGTGAT 58.990 45.455 7.12 0.00 0.00 3.06
2196 3357 2.604046 ATTAGTCAGGGCGTGTGATC 57.396 50.000 7.12 0.00 0.00 2.92
2197 3358 1.557099 TTAGTCAGGGCGTGTGATCT 58.443 50.000 7.12 5.00 0.00 2.75
2198 3359 0.817654 TAGTCAGGGCGTGTGATCTG 59.182 55.000 7.12 0.00 0.00 2.90
2199 3360 1.188219 AGTCAGGGCGTGTGATCTGT 61.188 55.000 7.12 0.00 0.00 3.41
2200 3361 0.737715 GTCAGGGCGTGTGATCTGTC 60.738 60.000 7.12 0.00 0.00 3.51
2201 3362 1.184970 TCAGGGCGTGTGATCTGTCA 61.185 55.000 7.12 0.00 0.00 3.58
2202 3363 0.738762 CAGGGCGTGTGATCTGTCAG 60.739 60.000 0.00 0.00 34.36 3.51
2203 3364 2.103042 GGGCGTGTGATCTGTCAGC 61.103 63.158 0.00 0.00 34.36 4.26
2204 3365 1.374631 GGCGTGTGATCTGTCAGCA 60.375 57.895 0.00 0.00 34.36 4.41
2205 3366 0.950555 GGCGTGTGATCTGTCAGCAA 60.951 55.000 0.00 0.00 34.36 3.91
2206 3367 0.441533 GCGTGTGATCTGTCAGCAAG 59.558 55.000 0.00 0.00 34.36 4.01
2207 3368 1.788258 CGTGTGATCTGTCAGCAAGT 58.212 50.000 0.00 0.00 34.36 3.16
2208 3369 1.458445 CGTGTGATCTGTCAGCAAGTG 59.542 52.381 0.00 0.00 34.36 3.16
2209 3370 2.759191 GTGTGATCTGTCAGCAAGTGA 58.241 47.619 0.00 0.00 34.36 3.41
2218 3379 1.709578 TCAGCAAGTGACTGGACTCT 58.290 50.000 0.00 0.00 35.78 3.24
2219 3380 2.042464 TCAGCAAGTGACTGGACTCTT 58.958 47.619 0.00 0.00 35.78 2.85
2220 3381 2.435805 TCAGCAAGTGACTGGACTCTTT 59.564 45.455 0.00 0.00 35.78 2.52
2221 3382 3.118261 TCAGCAAGTGACTGGACTCTTTT 60.118 43.478 0.00 0.00 35.78 2.27
2222 3383 3.249559 CAGCAAGTGACTGGACTCTTTTC 59.750 47.826 0.00 0.00 0.00 2.29
2223 3384 2.550180 GCAAGTGACTGGACTCTTTTCC 59.450 50.000 0.00 0.00 36.03 3.13
2224 3385 3.745797 GCAAGTGACTGGACTCTTTTCCT 60.746 47.826 0.00 0.00 36.51 3.36
2225 3386 4.455606 CAAGTGACTGGACTCTTTTCCTT 58.544 43.478 0.00 0.00 36.51 3.36
2226 3387 4.344359 AGTGACTGGACTCTTTTCCTTC 57.656 45.455 0.00 0.00 36.51 3.46
2227 3388 3.071747 AGTGACTGGACTCTTTTCCTTCC 59.928 47.826 0.00 0.00 36.51 3.46
2228 3389 3.045634 TGACTGGACTCTTTTCCTTCCA 58.954 45.455 0.00 0.00 36.51 3.53
2230 3391 3.778954 CTGGACTCTTTTCCTTCCAGT 57.221 47.619 8.12 0.00 46.94 4.00
2231 3392 3.406764 CTGGACTCTTTTCCTTCCAGTG 58.593 50.000 8.12 0.00 46.94 3.66
2232 3393 2.777692 TGGACTCTTTTCCTTCCAGTGT 59.222 45.455 0.00 0.00 36.51 3.55
2233 3394 3.181454 TGGACTCTTTTCCTTCCAGTGTC 60.181 47.826 0.00 0.00 36.51 3.67
2234 3395 3.403968 GACTCTTTTCCTTCCAGTGTCC 58.596 50.000 0.00 0.00 0.00 4.02
2235 3396 2.224305 ACTCTTTTCCTTCCAGTGTCCG 60.224 50.000 0.00 0.00 0.00 4.79
2236 3397 2.037251 CTCTTTTCCTTCCAGTGTCCGA 59.963 50.000 0.00 0.00 0.00 4.55
2237 3398 2.143925 CTTTTCCTTCCAGTGTCCGAC 58.856 52.381 0.00 0.00 0.00 4.79
2238 3399 0.395312 TTTCCTTCCAGTGTCCGACC 59.605 55.000 0.00 0.00 0.00 4.79
2239 3400 0.761323 TTCCTTCCAGTGTCCGACCA 60.761 55.000 0.00 0.00 0.00 4.02
2240 3401 0.761323 TCCTTCCAGTGTCCGACCAA 60.761 55.000 0.00 0.00 0.00 3.67
2241 3402 0.107831 CCTTCCAGTGTCCGACCAAA 59.892 55.000 0.00 0.00 0.00 3.28
2242 3403 1.512926 CTTCCAGTGTCCGACCAAAG 58.487 55.000 0.00 0.00 0.00 2.77
2243 3404 0.834612 TTCCAGTGTCCGACCAAAGT 59.165 50.000 0.00 0.00 0.00 2.66
2244 3405 0.105964 TCCAGTGTCCGACCAAAGTG 59.894 55.000 0.00 0.00 0.00 3.16
2245 3406 1.507141 CCAGTGTCCGACCAAAGTGC 61.507 60.000 0.00 0.00 0.00 4.40
2246 3407 0.813610 CAGTGTCCGACCAAAGTGCA 60.814 55.000 0.00 0.00 0.00 4.57
2247 3408 0.532862 AGTGTCCGACCAAAGTGCAG 60.533 55.000 0.00 0.00 0.00 4.41
2248 3409 1.891919 TGTCCGACCAAAGTGCAGC 60.892 57.895 0.00 0.00 0.00 5.25
2249 3410 1.598130 GTCCGACCAAAGTGCAGCT 60.598 57.895 0.00 0.00 0.00 4.24
2250 3411 1.148273 TCCGACCAAAGTGCAGCTT 59.852 52.632 0.00 0.00 39.52 3.74
2251 3412 0.884704 TCCGACCAAAGTGCAGCTTC 60.885 55.000 0.00 0.00 36.17 3.86
2252 3413 1.165907 CCGACCAAAGTGCAGCTTCA 61.166 55.000 0.00 0.00 36.17 3.02
2253 3414 0.662619 CGACCAAAGTGCAGCTTCAA 59.337 50.000 0.00 0.00 36.17 2.69
2254 3415 1.267806 CGACCAAAGTGCAGCTTCAAT 59.732 47.619 0.00 0.00 36.17 2.57
2255 3416 2.666619 CGACCAAAGTGCAGCTTCAATC 60.667 50.000 0.00 0.00 36.17 2.67
2256 3417 2.555757 GACCAAAGTGCAGCTTCAATCT 59.444 45.455 0.00 0.00 36.17 2.40
2257 3418 2.295349 ACCAAAGTGCAGCTTCAATCTG 59.705 45.455 0.00 0.00 36.17 2.90
2258 3419 2.352421 CCAAAGTGCAGCTTCAATCTGG 60.352 50.000 0.00 0.00 36.17 3.86
2259 3420 2.555325 CAAAGTGCAGCTTCAATCTGGA 59.445 45.455 0.00 0.00 36.17 3.86
2260 3421 2.110901 AGTGCAGCTTCAATCTGGAG 57.889 50.000 0.00 0.00 32.58 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.571460 CGTGACAAGAGCAGGCAAC 59.429 57.895 0.00 0.00 0.00 4.17
8 9 2.031012 CCGTGACAAGAGCAGGCA 59.969 61.111 0.00 0.00 0.00 4.75
9 10 3.426568 GCCGTGACAAGAGCAGGC 61.427 66.667 0.00 0.00 37.61 4.85
12 13 1.005748 CTGAGCCGTGACAAGAGCA 60.006 57.895 5.10 0.00 0.00 4.26
70 71 1.234821 TTTCATGGCCTTGACGTGAC 58.765 50.000 20.33 0.00 36.19 3.67
81 82 2.733227 GCGGCTATATGCATTTCATGGC 60.733 50.000 3.54 6.10 45.15 4.40
177 183 3.329814 ACCTTAGATTTTCACCCCGAAGT 59.670 43.478 0.00 0.00 34.32 3.01
180 186 2.907696 TGACCTTAGATTTTCACCCCGA 59.092 45.455 0.00 0.00 0.00 5.14
325 343 3.672293 CACTCAAGTGCCGCCATT 58.328 55.556 0.00 0.00 39.39 3.16
384 404 8.635765 ACCATTCTTAACATCACAAGTACAAT 57.364 30.769 0.00 0.00 0.00 2.71
501 535 8.757982 ATAGCAAAATCATACAAGATCCAAGT 57.242 30.769 0.00 0.00 0.00 3.16
507 541 8.567948 CCGGTAAATAGCAAAATCATACAAGAT 58.432 33.333 0.00 0.00 0.00 2.40
518 552 5.968528 AATCACACCGGTAAATAGCAAAA 57.031 34.783 6.87 0.00 0.00 2.44
547 583 2.618241 CACAGCCAACACTAACACACAT 59.382 45.455 0.00 0.00 0.00 3.21
672 712 6.150474 ACATCGTTTGACCCTAACTATTTTGG 59.850 38.462 0.00 0.00 0.00 3.28
698 738 5.467735 TGCTAGTAATGAGCAAGTGCATATG 59.532 40.000 6.00 0.00 46.71 1.78
741 781 5.347093 AGCATCGCATCGATCATTAGTTTAG 59.653 40.000 0.00 0.00 45.19 1.85
742 782 5.230182 AGCATCGCATCGATCATTAGTTTA 58.770 37.500 0.00 0.00 45.19 2.01
743 783 4.060900 AGCATCGCATCGATCATTAGTTT 58.939 39.130 0.00 0.00 45.19 2.66
744 784 3.657634 AGCATCGCATCGATCATTAGTT 58.342 40.909 0.00 0.00 45.19 2.24
745 785 3.249091 GAGCATCGCATCGATCATTAGT 58.751 45.455 0.00 0.00 45.19 2.24
770 815 2.995939 GGCAGCAAAGGTAAATTTCAGC 59.004 45.455 0.00 0.00 0.00 4.26
810 855 4.208047 GTGTTGATCAGAATCCGAATCTCG 59.792 45.833 0.00 0.00 40.07 4.04
860 909 5.983720 AGCATCGCGTGACTTTATAGTTTAT 59.016 36.000 5.77 0.00 33.84 1.40
861 910 5.345702 AGCATCGCGTGACTTTATAGTTTA 58.654 37.500 5.77 0.00 33.84 2.01
862 911 4.181578 AGCATCGCGTGACTTTATAGTTT 58.818 39.130 5.77 0.00 33.84 2.66
863 912 3.782046 AGCATCGCGTGACTTTATAGTT 58.218 40.909 5.77 0.00 33.84 2.24
864 913 3.438297 AGCATCGCGTGACTTTATAGT 57.562 42.857 5.77 0.00 37.31 2.12
865 914 3.182572 GGAAGCATCGCGTGACTTTATAG 59.817 47.826 5.77 0.00 0.00 1.31
866 915 3.120792 GGAAGCATCGCGTGACTTTATA 58.879 45.455 5.77 0.00 0.00 0.98
878 927 2.032860 ATCCGGTCCTGGAAGCATCG 62.033 60.000 0.00 0.00 42.46 3.84
943 996 3.037549 AGCTTATCTAGTCCTTGCAGCT 58.962 45.455 0.00 0.00 0.00 4.24
974 1028 7.771826 TGGCCTATACTATTTGGTGTTTAGAAC 59.228 37.037 3.32 0.00 0.00 3.01
980 1034 4.827284 GCATGGCCTATACTATTTGGTGTT 59.173 41.667 3.32 0.00 0.00 3.32
1038 1092 2.742589 GTCGACCCACTTCTTGAATTCC 59.257 50.000 3.51 0.00 0.00 3.01
1313 1393 2.549754 AGCTTCCATGTCAAGTTGAACG 59.450 45.455 7.25 0.00 0.00 3.95
1329 1409 9.202273 CACATAGTATTATTCAGGAGAAGCTTC 57.798 37.037 19.11 19.11 37.14 3.86
1330 1410 8.709308 ACACATAGTATTATTCAGGAGAAGCTT 58.291 33.333 0.00 0.00 37.14 3.74
1332 1412 9.982651 TTACACATAGTATTATTCAGGAGAAGC 57.017 33.333 0.00 0.00 32.82 3.86
1349 1436 9.793252 CAAATTCTCCTGGATTTTTACACATAG 57.207 33.333 0.00 0.00 0.00 2.23
1350 1437 9.308000 ACAAATTCTCCTGGATTTTTACACATA 57.692 29.630 0.00 0.00 0.00 2.29
1351 1438 8.193953 ACAAATTCTCCTGGATTTTTACACAT 57.806 30.769 0.00 0.00 0.00 3.21
1352 1439 7.286546 TGACAAATTCTCCTGGATTTTTACACA 59.713 33.333 0.00 0.00 0.00 3.72
1353 1440 7.657336 TGACAAATTCTCCTGGATTTTTACAC 58.343 34.615 0.00 0.00 0.00 2.90
1354 1441 7.831691 TGACAAATTCTCCTGGATTTTTACA 57.168 32.000 0.00 0.40 0.00 2.41
1355 1442 7.814587 CCTTGACAAATTCTCCTGGATTTTTAC 59.185 37.037 0.00 0.00 0.00 2.01
1356 1443 7.508977 ACCTTGACAAATTCTCCTGGATTTTTA 59.491 33.333 0.00 0.00 0.00 1.52
1357 1444 6.327365 ACCTTGACAAATTCTCCTGGATTTTT 59.673 34.615 0.00 0.00 0.00 1.94
1358 1445 5.840693 ACCTTGACAAATTCTCCTGGATTTT 59.159 36.000 0.00 0.00 0.00 1.82
1377 1464 2.097733 GTCGTCGTCGTAACAAACCTTG 60.098 50.000 1.33 0.00 38.33 3.61
1437 1524 5.626955 GCAACTTTCAAATCTTACAGCAGAC 59.373 40.000 0.00 0.00 0.00 3.51
1483 2128 0.944311 CGCAAGCCACGAGTACAACT 60.944 55.000 0.00 0.00 0.00 3.16
1484 2129 1.491563 CGCAAGCCACGAGTACAAC 59.508 57.895 0.00 0.00 0.00 3.32
1519 2572 4.735132 TCCCGTTCCGCAGCGAAG 62.735 66.667 18.75 0.00 0.00 3.79
1520 2573 4.077184 ATCCCGTTCCGCAGCGAA 62.077 61.111 18.75 5.95 0.00 4.70
1521 2574 4.508128 GATCCCGTTCCGCAGCGA 62.508 66.667 18.75 0.00 0.00 4.93
1523 2576 4.162690 AGGATCCCGTTCCGCAGC 62.163 66.667 8.55 0.00 40.94 5.25
1524 2577 1.107538 TAGAGGATCCCGTTCCGCAG 61.108 60.000 8.55 0.00 40.94 5.18
1525 2578 0.685131 TTAGAGGATCCCGTTCCGCA 60.685 55.000 8.55 0.00 40.94 5.69
1526 2579 0.249363 GTTAGAGGATCCCGTTCCGC 60.249 60.000 8.55 0.00 40.94 5.54
1527 2580 1.108776 TGTTAGAGGATCCCGTTCCG 58.891 55.000 8.55 0.00 40.94 4.30
1528 2581 4.150359 TCTATGTTAGAGGATCCCGTTCC 58.850 47.826 8.55 0.00 33.66 3.62
1529 2582 5.379732 CTCTATGTTAGAGGATCCCGTTC 57.620 47.826 8.55 0.00 46.70 3.95
1540 2593 7.033791 CGGTTACTTTGCTTCTCTATGTTAGA 58.966 38.462 0.00 0.00 0.00 2.10
1541 2594 6.812160 ACGGTTACTTTGCTTCTCTATGTTAG 59.188 38.462 0.00 0.00 0.00 2.34
1542 2595 6.588756 CACGGTTACTTTGCTTCTCTATGTTA 59.411 38.462 0.00 0.00 0.00 2.41
1543 2596 5.408604 CACGGTTACTTTGCTTCTCTATGTT 59.591 40.000 0.00 0.00 0.00 2.71
1544 2597 4.929808 CACGGTTACTTTGCTTCTCTATGT 59.070 41.667 0.00 0.00 0.00 2.29
1545 2598 4.929808 ACACGGTTACTTTGCTTCTCTATG 59.070 41.667 0.00 0.00 0.00 2.23
1546 2599 5.047235 AGACACGGTTACTTTGCTTCTCTAT 60.047 40.000 0.00 0.00 0.00 1.98
1547 2600 4.280174 AGACACGGTTACTTTGCTTCTCTA 59.720 41.667 0.00 0.00 0.00 2.43
1548 2601 3.069729 AGACACGGTTACTTTGCTTCTCT 59.930 43.478 0.00 0.00 0.00 3.10
1549 2602 3.391049 AGACACGGTTACTTTGCTTCTC 58.609 45.455 0.00 0.00 0.00 2.87
1550 2603 3.470645 AGACACGGTTACTTTGCTTCT 57.529 42.857 0.00 0.00 0.00 2.85
1551 2604 3.303791 CCAAGACACGGTTACTTTGCTTC 60.304 47.826 0.00 0.00 0.00 3.86
1552 2605 2.616842 CCAAGACACGGTTACTTTGCTT 59.383 45.455 0.00 0.00 0.00 3.91
1553 2606 2.218603 CCAAGACACGGTTACTTTGCT 58.781 47.619 0.00 0.00 0.00 3.91
1554 2607 1.334689 GCCAAGACACGGTTACTTTGC 60.335 52.381 0.00 0.00 0.00 3.68
1555 2608 2.032030 CAGCCAAGACACGGTTACTTTG 60.032 50.000 0.00 0.00 0.00 2.77
1556 2609 2.218603 CAGCCAAGACACGGTTACTTT 58.781 47.619 0.00 0.00 0.00 2.66
1557 2610 1.878953 CAGCCAAGACACGGTTACTT 58.121 50.000 0.00 0.00 0.00 2.24
1558 2611 0.602905 GCAGCCAAGACACGGTTACT 60.603 55.000 0.00 0.00 0.00 2.24
1559 2612 0.602905 AGCAGCCAAGACACGGTTAC 60.603 55.000 0.00 0.00 0.00 2.50
1560 2613 0.602638 CAGCAGCCAAGACACGGTTA 60.603 55.000 0.00 0.00 0.00 2.85
1561 2614 1.893808 CAGCAGCCAAGACACGGTT 60.894 57.895 0.00 0.00 0.00 4.44
1562 2615 2.281070 CAGCAGCCAAGACACGGT 60.281 61.111 0.00 0.00 0.00 4.83
1563 2616 3.052082 CCAGCAGCCAAGACACGG 61.052 66.667 0.00 0.00 0.00 4.94
1564 2617 3.052082 CCCAGCAGCCAAGACACG 61.052 66.667 0.00 0.00 0.00 4.49
1565 2618 2.490270 ATCCCCAGCAGCCAAGACAC 62.490 60.000 0.00 0.00 0.00 3.67
1566 2619 2.233566 ATCCCCAGCAGCCAAGACA 61.234 57.895 0.00 0.00 0.00 3.41
1589 2642 0.039074 CGAGCAGTCAAAGGAGACGT 60.039 55.000 0.00 0.00 43.24 4.34
1607 2672 1.589727 GGGTACGGTTACGGCATCG 60.590 63.158 0.00 0.00 46.48 3.84
1629 2694 2.818751 TCATACGCCCCTTCCAAATT 57.181 45.000 0.00 0.00 0.00 1.82
1630 2695 2.818751 TTCATACGCCCCTTCCAAAT 57.181 45.000 0.00 0.00 0.00 2.32
1633 2698 2.104111 CAGTATTCATACGCCCCTTCCA 59.896 50.000 0.00 0.00 38.28 3.53
1641 2760 6.258160 ACAAAAAGATGCAGTATTCATACGC 58.742 36.000 0.00 6.76 38.28 4.42
1643 2762 9.793252 ATCAACAAAAAGATGCAGTATTCATAC 57.207 29.630 0.00 0.00 0.00 2.39
1678 2797 0.040781 GCGCGACTAGGCAAAACAAA 60.041 50.000 12.10 0.00 0.00 2.83
1720 2844 2.034685 TGTGAGAACTTCAGAGTGGACG 59.965 50.000 0.00 0.00 36.21 4.79
1728 2852 3.134458 GGGACACTTGTGAGAACTTCAG 58.866 50.000 7.83 0.00 36.21 3.02
1738 2862 0.661020 GTTCCGTTGGGACACTTGTG 59.339 55.000 0.00 0.00 43.74 3.33
1752 2876 3.005472 TGTCCTAAGACTTGACAGTTCCG 59.995 47.826 4.65 0.00 43.91 4.30
1758 2882 3.055819 GGCTCATGTCCTAAGACTTGACA 60.056 47.826 9.96 9.96 46.55 3.58
1761 2885 3.196469 TCAGGCTCATGTCCTAAGACTTG 59.804 47.826 8.55 1.76 45.20 3.16
1762 2886 3.196685 GTCAGGCTCATGTCCTAAGACTT 59.803 47.826 8.55 0.00 43.91 3.01
1763 2887 2.763448 GTCAGGCTCATGTCCTAAGACT 59.237 50.000 8.55 0.00 43.91 3.24
1764 2888 2.480416 CGTCAGGCTCATGTCCTAAGAC 60.480 54.545 8.55 11.00 43.83 3.01
1765 2889 1.751351 CGTCAGGCTCATGTCCTAAGA 59.249 52.381 8.55 2.15 31.52 2.10
1766 2890 1.751351 TCGTCAGGCTCATGTCCTAAG 59.249 52.381 8.55 4.74 31.52 2.18
1769 2893 1.893786 GTCGTCAGGCTCATGTCCT 59.106 57.895 3.89 3.89 0.00 3.85
1770 2894 1.517257 CGTCGTCAGGCTCATGTCC 60.517 63.158 0.00 0.00 0.00 4.02
1771 2895 0.450583 TACGTCGTCAGGCTCATGTC 59.549 55.000 0.00 0.00 0.00 3.06
1778 2903 3.938653 TGATGATACGTCGTCAGGC 57.061 52.632 0.00 5.16 43.63 4.85
1788 2913 9.767684 TCGTGAAATAACATTTGTTGATGATAC 57.232 29.630 6.21 0.00 38.90 2.24
1793 2918 7.315142 AGCATCGTGAAATAACATTTGTTGAT 58.685 30.769 6.21 0.00 38.90 2.57
1804 2929 4.805719 CAGCAGAGTAGCATCGTGAAATAA 59.194 41.667 0.00 0.00 36.85 1.40
1822 2947 4.098055 AGAGTGTATCGTTGTACAGCAG 57.902 45.455 10.49 3.23 35.40 4.24
1828 2956 5.708697 TCTTGAAGGAGAGTGTATCGTTGTA 59.291 40.000 0.00 0.00 0.00 2.41
1842 2970 7.843490 TTGGTACGAATAATTCTTGAAGGAG 57.157 36.000 0.00 0.00 0.00 3.69
1843 2971 7.662258 TGTTTGGTACGAATAATTCTTGAAGGA 59.338 33.333 0.00 0.00 0.00 3.36
1854 2982 7.925043 ACAATGGTATGTTTGGTACGAATAA 57.075 32.000 0.00 0.00 0.00 1.40
1855 2983 9.616156 AATACAATGGTATGTTTGGTACGAATA 57.384 29.630 0.00 0.00 40.09 1.75
1856 2984 8.514330 AATACAATGGTATGTTTGGTACGAAT 57.486 30.769 0.00 0.00 40.09 3.34
1857 2985 7.925043 AATACAATGGTATGTTTGGTACGAA 57.075 32.000 0.00 0.00 40.09 3.85
1858 2986 7.606839 TGAAATACAATGGTATGTTTGGTACGA 59.393 33.333 0.00 0.00 40.09 3.43
1859 2987 7.694784 GTGAAATACAATGGTATGTTTGGTACG 59.305 37.037 0.00 0.00 40.09 3.67
1860 2988 8.516234 TGTGAAATACAATGGTATGTTTGGTAC 58.484 33.333 0.00 0.00 40.09 3.34
1861 2989 8.637196 TGTGAAATACAATGGTATGTTTGGTA 57.363 30.769 0.00 0.00 40.09 3.25
1862 2990 7.531857 TGTGAAATACAATGGTATGTTTGGT 57.468 32.000 0.00 0.00 40.09 3.67
1876 3012 5.308497 TCAACCCTACCTCTTGTGAAATACA 59.692 40.000 0.00 0.00 37.56 2.29
1877 3013 5.801380 TCAACCCTACCTCTTGTGAAATAC 58.199 41.667 0.00 0.00 0.00 1.89
1878 3014 5.570844 GCTCAACCCTACCTCTTGTGAAATA 60.571 44.000 0.00 0.00 0.00 1.40
1882 3018 1.623811 GCTCAACCCTACCTCTTGTGA 59.376 52.381 0.00 0.00 0.00 3.58
1892 3028 4.644685 GCAGGAAATAATTGCTCAACCCTA 59.355 41.667 0.00 0.00 34.65 3.53
1896 3032 6.694411 CAGTATGCAGGAAATAATTGCTCAAC 59.306 38.462 0.00 0.00 34.65 3.18
1899 3035 6.624352 TCAGTATGCAGGAAATAATTGCTC 57.376 37.500 0.00 0.00 38.60 4.26
1927 3063 1.094785 ACCTTCATATTGTGCGGTGC 58.905 50.000 0.00 0.00 32.41 5.01
1934 3070 7.348815 TCTGATGGATTTCACCTTCATATTGT 58.651 34.615 0.00 0.00 41.16 2.71
1937 3073 8.857098 CATTTCTGATGGATTTCACCTTCATAT 58.143 33.333 0.00 0.00 41.16 1.78
1938 3074 8.054572 TCATTTCTGATGGATTTCACCTTCATA 58.945 33.333 0.00 0.00 41.16 2.15
1939 3075 6.893554 TCATTTCTGATGGATTTCACCTTCAT 59.106 34.615 0.00 0.00 41.16 2.57
1940 3076 6.247676 TCATTTCTGATGGATTTCACCTTCA 58.752 36.000 0.00 0.00 40.26 3.02
1941 3077 6.679884 GCTCATTTCTGATGGATTTCACCTTC 60.680 42.308 0.00 0.00 35.52 3.46
1942 3078 5.126707 GCTCATTTCTGATGGATTTCACCTT 59.873 40.000 0.00 0.00 0.00 3.50
1943 3079 4.643784 GCTCATTTCTGATGGATTTCACCT 59.356 41.667 0.00 0.00 0.00 4.00
1946 3082 3.956199 GGGCTCATTTCTGATGGATTTCA 59.044 43.478 0.00 0.00 0.00 2.69
1983 3144 1.741706 CTGTGCAAGGCGAAGATCATT 59.258 47.619 0.00 0.00 0.00 2.57
2000 3161 1.042559 CAGGTGGTGCCCAAAACTGT 61.043 55.000 10.79 0.00 38.26 3.55
2001 3162 0.754957 TCAGGTGGTGCCCAAAACTG 60.755 55.000 11.94 11.94 38.26 3.16
2002 3163 0.468029 CTCAGGTGGTGCCCAAAACT 60.468 55.000 0.00 0.00 38.26 2.66
2003 3164 0.467290 TCTCAGGTGGTGCCCAAAAC 60.467 55.000 0.00 0.00 38.26 2.43
2004 3165 0.482446 ATCTCAGGTGGTGCCCAAAA 59.518 50.000 0.00 0.00 38.26 2.44
2005 3166 0.251297 CATCTCAGGTGGTGCCCAAA 60.251 55.000 0.00 0.00 38.26 3.28
2006 3167 1.133181 TCATCTCAGGTGGTGCCCAA 61.133 55.000 0.00 0.00 38.26 4.12
2007 3168 1.133181 TTCATCTCAGGTGGTGCCCA 61.133 55.000 0.00 0.00 38.26 5.36
2008 3169 0.393537 CTTCATCTCAGGTGGTGCCC 60.394 60.000 0.00 0.00 38.26 5.36
2009 3170 0.393537 CCTTCATCTCAGGTGGTGCC 60.394 60.000 0.00 0.00 37.58 5.01
2010 3171 1.028868 GCCTTCATCTCAGGTGGTGC 61.029 60.000 0.00 0.00 33.40 5.01
2011 3172 0.325933 TGCCTTCATCTCAGGTGGTG 59.674 55.000 0.00 0.00 33.40 4.17
2012 3173 0.326264 GTGCCTTCATCTCAGGTGGT 59.674 55.000 0.00 0.00 33.40 4.16
2013 3174 0.325933 TGTGCCTTCATCTCAGGTGG 59.674 55.000 0.00 0.00 33.40 4.61
2014 3175 1.446907 GTGTGCCTTCATCTCAGGTG 58.553 55.000 0.00 0.00 33.40 4.00
2015 3176 0.036952 CGTGTGCCTTCATCTCAGGT 60.037 55.000 0.00 0.00 33.40 4.00
2016 3177 0.742281 CCGTGTGCCTTCATCTCAGG 60.742 60.000 0.00 0.00 34.08 3.86
2017 3178 0.742281 CCCGTGTGCCTTCATCTCAG 60.742 60.000 0.00 0.00 0.00 3.35
2018 3179 1.191489 TCCCGTGTGCCTTCATCTCA 61.191 55.000 0.00 0.00 0.00 3.27
2019 3180 0.741221 GTCCCGTGTGCCTTCATCTC 60.741 60.000 0.00 0.00 0.00 2.75
2020 3181 1.296715 GTCCCGTGTGCCTTCATCT 59.703 57.895 0.00 0.00 0.00 2.90
2021 3182 2.100631 CGTCCCGTGTGCCTTCATC 61.101 63.158 0.00 0.00 0.00 2.92
2022 3183 2.047274 CGTCCCGTGTGCCTTCAT 60.047 61.111 0.00 0.00 0.00 2.57
2023 3184 2.313051 TTTCGTCCCGTGTGCCTTCA 62.313 55.000 0.00 0.00 0.00 3.02
2024 3185 0.953960 ATTTCGTCCCGTGTGCCTTC 60.954 55.000 0.00 0.00 0.00 3.46
2025 3186 1.072505 ATTTCGTCCCGTGTGCCTT 59.927 52.632 0.00 0.00 0.00 4.35
2026 3187 1.671054 CATTTCGTCCCGTGTGCCT 60.671 57.895 0.00 0.00 0.00 4.75
2027 3188 2.867472 CATTTCGTCCCGTGTGCC 59.133 61.111 0.00 0.00 0.00 5.01
2028 3189 2.175811 GCATTTCGTCCCGTGTGC 59.824 61.111 0.00 0.00 0.00 4.57
2029 3190 1.227999 ACTGCATTTCGTCCCGTGTG 61.228 55.000 0.00 0.00 0.00 3.82
2030 3191 0.534203 AACTGCATTTCGTCCCGTGT 60.534 50.000 0.00 0.00 0.00 4.49
2031 3192 1.434555 TAACTGCATTTCGTCCCGTG 58.565 50.000 0.00 0.00 0.00 4.94
2032 3193 2.006888 CATAACTGCATTTCGTCCCGT 58.993 47.619 0.00 0.00 0.00 5.28
2033 3194 2.737467 CATAACTGCATTTCGTCCCG 57.263 50.000 0.00 0.00 0.00 5.14
2045 3206 2.838386 ATGAAAGCAGCGCATAACTG 57.162 45.000 11.47 0.00 38.22 3.16
2046 3207 2.733227 GCAATGAAAGCAGCGCATAACT 60.733 45.455 11.47 0.00 0.00 2.24
2047 3208 1.585214 GCAATGAAAGCAGCGCATAAC 59.415 47.619 11.47 0.00 0.00 1.89
2048 3209 1.794800 CGCAATGAAAGCAGCGCATAA 60.795 47.619 11.47 0.00 43.80 1.90
2049 3210 0.248175 CGCAATGAAAGCAGCGCATA 60.248 50.000 11.47 0.00 43.80 3.14
2050 3211 1.515519 CGCAATGAAAGCAGCGCAT 60.516 52.632 11.47 0.00 43.80 4.73
2051 3212 2.126773 CGCAATGAAAGCAGCGCA 60.127 55.556 11.47 0.00 43.80 6.09
2054 3215 3.201726 TCTTAACGCAATGAAAGCAGC 57.798 42.857 0.00 0.00 0.00 5.25
2055 3216 4.618489 CCTTTCTTAACGCAATGAAAGCAG 59.382 41.667 15.17 5.07 42.10 4.24
2056 3217 4.277174 TCCTTTCTTAACGCAATGAAAGCA 59.723 37.500 15.17 4.07 42.10 3.91
2057 3218 4.794169 TCCTTTCTTAACGCAATGAAAGC 58.206 39.130 15.17 0.00 42.10 3.51
2058 3219 7.974675 TCTATCCTTTCTTAACGCAATGAAAG 58.025 34.615 14.28 14.28 42.69 2.62
2059 3220 7.915293 TCTATCCTTTCTTAACGCAATGAAA 57.085 32.000 0.00 0.00 0.00 2.69
2060 3221 7.389330 TGTTCTATCCTTTCTTAACGCAATGAA 59.611 33.333 0.00 0.00 0.00 2.57
2061 3222 6.876789 TGTTCTATCCTTTCTTAACGCAATGA 59.123 34.615 0.00 0.00 0.00 2.57
2062 3223 7.072177 TGTTCTATCCTTTCTTAACGCAATG 57.928 36.000 0.00 0.00 0.00 2.82
2063 3224 6.879458 ACTGTTCTATCCTTTCTTAACGCAAT 59.121 34.615 0.00 0.00 0.00 3.56
2064 3225 6.228258 ACTGTTCTATCCTTTCTTAACGCAA 58.772 36.000 0.00 0.00 0.00 4.85
2065 3226 5.790593 ACTGTTCTATCCTTTCTTAACGCA 58.209 37.500 0.00 0.00 0.00 5.24
2066 3227 6.723131 AACTGTTCTATCCTTTCTTAACGC 57.277 37.500 0.00 0.00 0.00 4.84
2081 3242 8.896744 CCATGTGATCAATTGTATAACTGTTCT 58.103 33.333 5.13 0.00 0.00 3.01
2082 3243 7.645340 GCCATGTGATCAATTGTATAACTGTTC 59.355 37.037 5.13 0.00 0.00 3.18
2083 3244 7.340232 AGCCATGTGATCAATTGTATAACTGTT 59.660 33.333 5.13 0.00 0.00 3.16
2084 3245 6.830324 AGCCATGTGATCAATTGTATAACTGT 59.170 34.615 5.13 0.00 0.00 3.55
2085 3246 7.136772 CAGCCATGTGATCAATTGTATAACTG 58.863 38.462 5.13 0.27 0.00 3.16
2086 3247 6.263842 CCAGCCATGTGATCAATTGTATAACT 59.736 38.462 5.13 0.00 0.00 2.24
2087 3248 6.262944 TCCAGCCATGTGATCAATTGTATAAC 59.737 38.462 5.13 2.41 0.00 1.89
2088 3249 6.363882 TCCAGCCATGTGATCAATTGTATAA 58.636 36.000 5.13 0.00 0.00 0.98
2089 3250 5.939447 TCCAGCCATGTGATCAATTGTATA 58.061 37.500 5.13 0.00 0.00 1.47
2090 3251 4.795469 TCCAGCCATGTGATCAATTGTAT 58.205 39.130 5.13 0.00 0.00 2.29
2091 3252 4.233632 TCCAGCCATGTGATCAATTGTA 57.766 40.909 5.13 0.00 0.00 2.41
2092 3253 3.090210 TCCAGCCATGTGATCAATTGT 57.910 42.857 5.13 0.00 0.00 2.71
2093 3254 3.193903 TGTTCCAGCCATGTGATCAATTG 59.806 43.478 0.00 0.00 0.00 2.32
2094 3255 3.433343 TGTTCCAGCCATGTGATCAATT 58.567 40.909 0.00 0.00 0.00 2.32
2095 3256 3.090210 TGTTCCAGCCATGTGATCAAT 57.910 42.857 0.00 0.00 0.00 2.57
2096 3257 2.583024 TGTTCCAGCCATGTGATCAA 57.417 45.000 0.00 0.00 0.00 2.57
2097 3258 2.557924 GTTTGTTCCAGCCATGTGATCA 59.442 45.455 0.00 0.00 0.00 2.92
2098 3259 2.821969 AGTTTGTTCCAGCCATGTGATC 59.178 45.455 0.00 0.00 0.00 2.92
2099 3260 2.559668 CAGTTTGTTCCAGCCATGTGAT 59.440 45.455 0.00 0.00 0.00 3.06
2100 3261 1.955778 CAGTTTGTTCCAGCCATGTGA 59.044 47.619 0.00 0.00 0.00 3.58
2101 3262 1.955778 TCAGTTTGTTCCAGCCATGTG 59.044 47.619 0.00 0.00 0.00 3.21
2102 3263 2.363306 TCAGTTTGTTCCAGCCATGT 57.637 45.000 0.00 0.00 0.00 3.21
2103 3264 2.886523 TCTTCAGTTTGTTCCAGCCATG 59.113 45.455 0.00 0.00 0.00 3.66
2104 3265 3.228188 TCTTCAGTTTGTTCCAGCCAT 57.772 42.857 0.00 0.00 0.00 4.40
2105 3266 2.727123 TCTTCAGTTTGTTCCAGCCA 57.273 45.000 0.00 0.00 0.00 4.75
2106 3267 4.385358 TTTTCTTCAGTTTGTTCCAGCC 57.615 40.909 0.00 0.00 0.00 4.85
2107 3268 8.419076 TTTTATTTTCTTCAGTTTGTTCCAGC 57.581 30.769 0.00 0.00 0.00 4.85
2109 3270 9.712305 TGTTTTTATTTTCTTCAGTTTGTTCCA 57.288 25.926 0.00 0.00 0.00 3.53
2111 3272 9.689075 GCTGTTTTTATTTTCTTCAGTTTGTTC 57.311 29.630 0.00 0.00 0.00 3.18
2112 3273 8.664798 GGCTGTTTTTATTTTCTTCAGTTTGTT 58.335 29.630 0.00 0.00 0.00 2.83
2113 3274 7.821846 TGGCTGTTTTTATTTTCTTCAGTTTGT 59.178 29.630 0.00 0.00 0.00 2.83
2114 3275 8.195617 TGGCTGTTTTTATTTTCTTCAGTTTG 57.804 30.769 0.00 0.00 0.00 2.93
2115 3276 8.785329 TTGGCTGTTTTTATTTTCTTCAGTTT 57.215 26.923 0.00 0.00 0.00 2.66
2116 3277 7.495606 CCTTGGCTGTTTTTATTTTCTTCAGTT 59.504 33.333 0.00 0.00 0.00 3.16
2117 3278 6.986231 CCTTGGCTGTTTTTATTTTCTTCAGT 59.014 34.615 0.00 0.00 0.00 3.41
2118 3279 7.169813 GTCCTTGGCTGTTTTTATTTTCTTCAG 59.830 37.037 0.00 0.00 0.00 3.02
2119 3280 6.983890 GTCCTTGGCTGTTTTTATTTTCTTCA 59.016 34.615 0.00 0.00 0.00 3.02
2120 3281 6.423905 GGTCCTTGGCTGTTTTTATTTTCTTC 59.576 38.462 0.00 0.00 0.00 2.87
2121 3282 6.126911 TGGTCCTTGGCTGTTTTTATTTTCTT 60.127 34.615 0.00 0.00 0.00 2.52
2122 3283 5.365314 TGGTCCTTGGCTGTTTTTATTTTCT 59.635 36.000 0.00 0.00 0.00 2.52
2123 3284 5.606505 TGGTCCTTGGCTGTTTTTATTTTC 58.393 37.500 0.00 0.00 0.00 2.29
2124 3285 5.622346 TGGTCCTTGGCTGTTTTTATTTT 57.378 34.783 0.00 0.00 0.00 1.82
2125 3286 5.104735 TGTTGGTCCTTGGCTGTTTTTATTT 60.105 36.000 0.00 0.00 0.00 1.40
2126 3287 4.407296 TGTTGGTCCTTGGCTGTTTTTATT 59.593 37.500 0.00 0.00 0.00 1.40
2127 3288 3.964031 TGTTGGTCCTTGGCTGTTTTTAT 59.036 39.130 0.00 0.00 0.00 1.40
2128 3289 3.366396 TGTTGGTCCTTGGCTGTTTTTA 58.634 40.909 0.00 0.00 0.00 1.52
2129 3290 2.168313 CTGTTGGTCCTTGGCTGTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
2130 3291 1.756538 CTGTTGGTCCTTGGCTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
2131 3292 1.402787 CTGTTGGTCCTTGGCTGTTT 58.597 50.000 0.00 0.00 0.00 2.83
2132 3293 1.109323 GCTGTTGGTCCTTGGCTGTT 61.109 55.000 0.00 0.00 0.00 3.16
2133 3294 1.529244 GCTGTTGGTCCTTGGCTGT 60.529 57.895 0.00 0.00 0.00 4.40
2134 3295 1.521450 CTGCTGTTGGTCCTTGGCTG 61.521 60.000 0.00 0.00 0.00 4.85
2135 3296 1.228367 CTGCTGTTGGTCCTTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
2136 3297 2.924105 GCTGCTGTTGGTCCTTGGC 61.924 63.158 0.00 0.00 0.00 4.52
2137 3298 1.108727 TTGCTGCTGTTGGTCCTTGG 61.109 55.000 0.00 0.00 0.00 3.61
2138 3299 0.746063 TTTGCTGCTGTTGGTCCTTG 59.254 50.000 0.00 0.00 0.00 3.61
2139 3300 1.410153 CTTTTGCTGCTGTTGGTCCTT 59.590 47.619 0.00 0.00 0.00 3.36
2140 3301 1.035139 CTTTTGCTGCTGTTGGTCCT 58.965 50.000 0.00 0.00 0.00 3.85
2141 3302 0.746659 ACTTTTGCTGCTGTTGGTCC 59.253 50.000 0.00 0.00 0.00 4.46
2142 3303 2.159254 TCAACTTTTGCTGCTGTTGGTC 60.159 45.455 19.32 0.00 39.87 4.02
2143 3304 1.824230 TCAACTTTTGCTGCTGTTGGT 59.176 42.857 19.32 4.97 39.87 3.67
2144 3305 2.195922 GTCAACTTTTGCTGCTGTTGG 58.804 47.619 19.32 4.50 39.87 3.77
2145 3306 1.847999 CGTCAACTTTTGCTGCTGTTG 59.152 47.619 16.07 16.07 40.53 3.33
2146 3307 1.798813 GCGTCAACTTTTGCTGCTGTT 60.799 47.619 0.00 0.00 0.00 3.16
2147 3308 0.248621 GCGTCAACTTTTGCTGCTGT 60.249 50.000 0.00 0.00 0.00 4.40
2148 3309 0.248580 TGCGTCAACTTTTGCTGCTG 60.249 50.000 0.00 0.00 33.52 4.41
2149 3310 0.670162 ATGCGTCAACTTTTGCTGCT 59.330 45.000 0.00 0.00 33.52 4.24
2150 3311 1.490621 AATGCGTCAACTTTTGCTGC 58.509 45.000 0.00 0.00 0.00 5.25
2151 3312 3.626977 TGTAATGCGTCAACTTTTGCTG 58.373 40.909 0.00 0.00 0.00 4.41
2152 3313 3.853307 GCTGTAATGCGTCAACTTTTGCT 60.853 43.478 0.00 0.00 0.00 3.91
2153 3314 2.405025 GCTGTAATGCGTCAACTTTTGC 59.595 45.455 0.00 0.00 0.00 3.68
2154 3315 3.626977 TGCTGTAATGCGTCAACTTTTG 58.373 40.909 0.00 0.00 35.36 2.44
2155 3316 3.980646 TGCTGTAATGCGTCAACTTTT 57.019 38.095 0.00 0.00 35.36 2.27
2156 3317 3.980646 TTGCTGTAATGCGTCAACTTT 57.019 38.095 0.00 0.00 35.36 2.66
2157 3318 3.980646 TTTGCTGTAATGCGTCAACTT 57.019 38.095 0.00 0.00 35.36 2.66
2158 3319 4.503741 AATTTGCTGTAATGCGTCAACT 57.496 36.364 0.00 0.00 35.36 3.16
2159 3320 5.390613 ACTAATTTGCTGTAATGCGTCAAC 58.609 37.500 0.00 0.00 35.36 3.18
2160 3321 5.180304 TGACTAATTTGCTGTAATGCGTCAA 59.820 36.000 0.00 0.00 30.87 3.18
2161 3322 4.693095 TGACTAATTTGCTGTAATGCGTCA 59.307 37.500 0.00 0.00 35.36 4.35
2162 3323 5.216566 TGACTAATTTGCTGTAATGCGTC 57.783 39.130 0.00 0.00 35.36 5.19
2163 3324 4.094887 CCTGACTAATTTGCTGTAATGCGT 59.905 41.667 0.00 0.00 35.36 5.24
2164 3325 4.496341 CCCTGACTAATTTGCTGTAATGCG 60.496 45.833 0.00 0.00 35.36 4.73
2165 3326 4.734695 GCCCTGACTAATTTGCTGTAATGC 60.735 45.833 0.00 0.00 0.00 3.56
2166 3327 4.496341 CGCCCTGACTAATTTGCTGTAATG 60.496 45.833 0.00 0.00 0.00 1.90
2167 3328 3.627577 CGCCCTGACTAATTTGCTGTAAT 59.372 43.478 0.00 0.00 0.00 1.89
2168 3329 3.006940 CGCCCTGACTAATTTGCTGTAA 58.993 45.455 0.00 0.00 0.00 2.41
2169 3330 2.027561 ACGCCCTGACTAATTTGCTGTA 60.028 45.455 0.00 0.00 0.00 2.74
2170 3331 1.271379 ACGCCCTGACTAATTTGCTGT 60.271 47.619 0.00 0.00 0.00 4.40
2171 3332 1.131126 CACGCCCTGACTAATTTGCTG 59.869 52.381 0.00 0.00 0.00 4.41
2172 3333 1.271379 ACACGCCCTGACTAATTTGCT 60.271 47.619 0.00 0.00 0.00 3.91
2173 3334 1.135689 CACACGCCCTGACTAATTTGC 60.136 52.381 0.00 0.00 0.00 3.68
2174 3335 2.422597 TCACACGCCCTGACTAATTTG 58.577 47.619 0.00 0.00 0.00 2.32
2175 3336 2.851263 TCACACGCCCTGACTAATTT 57.149 45.000 0.00 0.00 0.00 1.82
2176 3337 2.501723 AGATCACACGCCCTGACTAATT 59.498 45.455 0.00 0.00 0.00 1.40
2177 3338 2.111384 AGATCACACGCCCTGACTAAT 58.889 47.619 0.00 0.00 0.00 1.73
2178 3339 1.204704 CAGATCACACGCCCTGACTAA 59.795 52.381 0.00 0.00 0.00 2.24
2179 3340 0.817654 CAGATCACACGCCCTGACTA 59.182 55.000 0.00 0.00 0.00 2.59
2180 3341 1.188219 ACAGATCACACGCCCTGACT 61.188 55.000 0.00 0.00 0.00 3.41
2181 3342 0.737715 GACAGATCACACGCCCTGAC 60.738 60.000 0.00 0.00 0.00 3.51
2182 3343 1.184970 TGACAGATCACACGCCCTGA 61.185 55.000 0.00 0.00 0.00 3.86
2183 3344 0.738762 CTGACAGATCACACGCCCTG 60.739 60.000 0.00 0.00 0.00 4.45
2184 3345 1.593787 CTGACAGATCACACGCCCT 59.406 57.895 0.00 0.00 0.00 5.19
2185 3346 2.103042 GCTGACAGATCACACGCCC 61.103 63.158 6.65 0.00 0.00 6.13
2186 3347 0.950555 TTGCTGACAGATCACACGCC 60.951 55.000 6.65 0.00 0.00 5.68
2187 3348 0.441533 CTTGCTGACAGATCACACGC 59.558 55.000 6.65 0.00 0.00 5.34
2188 3349 1.458445 CACTTGCTGACAGATCACACG 59.542 52.381 6.65 0.00 0.00 4.49
2189 3350 2.759191 TCACTTGCTGACAGATCACAC 58.241 47.619 6.65 0.00 0.00 3.82
2199 3360 1.709578 AGAGTCCAGTCACTTGCTGA 58.290 50.000 0.00 0.00 36.12 4.26
2200 3361 2.540265 AAGAGTCCAGTCACTTGCTG 57.460 50.000 0.00 0.00 0.00 4.41
2201 3362 3.471680 GAAAAGAGTCCAGTCACTTGCT 58.528 45.455 0.00 0.00 0.00 3.91
2202 3363 2.550180 GGAAAAGAGTCCAGTCACTTGC 59.450 50.000 0.00 0.00 37.65 4.01
2203 3364 4.078639 AGGAAAAGAGTCCAGTCACTTG 57.921 45.455 0.00 0.00 40.48 3.16
2204 3365 4.445019 GGAAGGAAAAGAGTCCAGTCACTT 60.445 45.833 0.00 0.00 40.48 3.16
2205 3366 3.071747 GGAAGGAAAAGAGTCCAGTCACT 59.928 47.826 0.00 0.00 40.48 3.41
2206 3367 3.181454 TGGAAGGAAAAGAGTCCAGTCAC 60.181 47.826 0.00 0.00 40.48 3.67
2207 3368 3.045634 TGGAAGGAAAAGAGTCCAGTCA 58.954 45.455 0.00 0.00 40.48 3.41
2208 3369 3.771577 TGGAAGGAAAAGAGTCCAGTC 57.228 47.619 0.00 0.00 40.48 3.51
2211 3372 2.777692 ACACTGGAAGGAAAAGAGTCCA 59.222 45.455 0.00 0.00 40.48 4.02
2212 3373 3.403968 GACACTGGAAGGAAAAGAGTCC 58.596 50.000 0.00 0.00 39.30 3.85
2213 3374 3.403968 GGACACTGGAAGGAAAAGAGTC 58.596 50.000 0.00 0.00 39.30 3.36
2214 3375 2.224305 CGGACACTGGAAGGAAAAGAGT 60.224 50.000 0.00 0.00 39.30 3.24
2215 3376 2.037251 TCGGACACTGGAAGGAAAAGAG 59.963 50.000 0.00 0.00 39.30 2.85
2216 3377 2.043992 TCGGACACTGGAAGGAAAAGA 58.956 47.619 0.00 0.00 39.30 2.52
2217 3378 2.143925 GTCGGACACTGGAAGGAAAAG 58.856 52.381 2.62 0.00 39.30 2.27
2218 3379 1.202722 GGTCGGACACTGGAAGGAAAA 60.203 52.381 10.76 0.00 39.30 2.29
2219 3380 0.395312 GGTCGGACACTGGAAGGAAA 59.605 55.000 10.76 0.00 39.30 3.13
2220 3381 0.761323 TGGTCGGACACTGGAAGGAA 60.761 55.000 10.76 0.00 39.30 3.36
2221 3382 0.761323 TTGGTCGGACACTGGAAGGA 60.761 55.000 10.76 0.00 39.30 3.36
2222 3383 0.107831 TTTGGTCGGACACTGGAAGG 59.892 55.000 10.76 0.00 39.30 3.46
2223 3384 1.202651 ACTTTGGTCGGACACTGGAAG 60.203 52.381 10.76 8.19 42.29 3.46
2224 3385 0.834612 ACTTTGGTCGGACACTGGAA 59.165 50.000 10.76 0.00 0.00 3.53
2225 3386 0.105964 CACTTTGGTCGGACACTGGA 59.894 55.000 10.76 0.00 0.00 3.86
2226 3387 1.507141 GCACTTTGGTCGGACACTGG 61.507 60.000 10.76 0.16 0.00 4.00
2227 3388 0.813610 TGCACTTTGGTCGGACACTG 60.814 55.000 10.76 0.00 0.00 3.66
2228 3389 0.532862 CTGCACTTTGGTCGGACACT 60.533 55.000 10.76 0.00 0.00 3.55
2229 3390 1.941812 CTGCACTTTGGTCGGACAC 59.058 57.895 10.76 0.17 0.00 3.67
2230 3391 1.891919 GCTGCACTTTGGTCGGACA 60.892 57.895 10.76 0.00 0.00 4.02
2231 3392 1.166531 AAGCTGCACTTTGGTCGGAC 61.167 55.000 1.02 0.00 33.71 4.79
2232 3393 0.884704 GAAGCTGCACTTTGGTCGGA 60.885 55.000 1.02 0.00 39.29 4.55
2233 3394 1.165907 TGAAGCTGCACTTTGGTCGG 61.166 55.000 1.02 0.00 39.29 4.79
2234 3395 0.662619 TTGAAGCTGCACTTTGGTCG 59.337 50.000 0.00 0.00 39.29 4.79
2235 3396 2.555757 AGATTGAAGCTGCACTTTGGTC 59.444 45.455 0.00 0.00 39.29 4.02
2236 3397 2.295349 CAGATTGAAGCTGCACTTTGGT 59.705 45.455 0.00 0.00 39.29 3.67
2237 3398 2.352421 CCAGATTGAAGCTGCACTTTGG 60.352 50.000 7.17 7.17 39.29 3.28
2238 3399 2.555325 TCCAGATTGAAGCTGCACTTTG 59.445 45.455 4.66 0.00 39.29 2.77
2239 3400 2.818432 CTCCAGATTGAAGCTGCACTTT 59.182 45.455 4.66 0.00 39.29 2.66
2240 3401 2.434428 CTCCAGATTGAAGCTGCACTT 58.566 47.619 4.66 1.82 42.98 3.16
2241 3402 2.110901 CTCCAGATTGAAGCTGCACT 57.889 50.000 4.66 0.00 32.06 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.