Multiple sequence alignment - TraesCS2A01G164000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G164000 chr2A 100.000 4668 0 0 1 4668 116156202 116160869 0.000000e+00 8621.0
1 TraesCS2A01G164000 chr2A 87.835 411 43 3 3742 4146 116165170 116165579 4.230000e-130 475.0
2 TraesCS2A01G164000 chr2B 90.982 2107 108 27 1406 3468 165273742 165275810 0.000000e+00 2763.0
3 TraesCS2A01G164000 chr2B 93.196 632 37 2 3520 4146 165275827 165276457 0.000000e+00 924.0
4 TraesCS2A01G164000 chr2B 91.993 562 37 3 750 1305 165273044 165273603 0.000000e+00 782.0
5 TraesCS2A01G164000 chr2B 83.333 336 39 9 2852 3172 761245989 761246322 1.270000e-75 294.0
6 TraesCS2A01G164000 chr2D 94.048 1361 59 5 3180 4535 114772443 114773786 0.000000e+00 2045.0
7 TraesCS2A01G164000 chr2D 89.961 1534 107 25 1310 2818 114770939 114772450 0.000000e+00 1936.0
8 TraesCS2A01G164000 chr2D 91.718 809 53 9 503 1305 114770074 114770874 0.000000e+00 1110.0
9 TraesCS2A01G164000 chr2D 93.580 405 25 1 3742 4146 114801146 114801549 1.860000e-168 603.0
10 TraesCS2A01G164000 chr2D 88.158 304 23 6 344 639 114769659 114769957 2.670000e-92 350.0
11 TraesCS2A01G164000 chr2D 83.957 374 36 14 2819 3172 651426300 651425931 2.080000e-88 337.0
12 TraesCS2A01G164000 chr2D 87.215 219 17 5 4274 4488 114801917 114802128 6.040000e-59 239.0
13 TraesCS2A01G164000 chr2D 89.216 102 5 2 639 740 114769998 114770093 6.340000e-24 122.0
14 TraesCS2A01G164000 chr2D 95.833 72 3 0 4532 4603 114773986 114774057 2.950000e-22 117.0
15 TraesCS2A01G164000 chr2D 95.588 68 3 0 4597 4664 114774012 114774079 4.940000e-20 110.0
16 TraesCS2A01G164000 chr7A 84.636 371 37 10 2819 3172 63333605 63333238 7.430000e-93 351.0
17 TraesCS2A01G164000 chr7D 83.602 372 38 12 2817 3172 579144685 579145049 1.250000e-85 327.0
18 TraesCS2A01G164000 chr7D 83.735 332 41 7 2852 3172 29683286 29683615 7.590000e-78 302.0
19 TraesCS2A01G164000 chr6D 83.284 335 39 8 2852 3172 377549340 377549009 4.570000e-75 292.0
20 TraesCS2A01G164000 chr4B 85.866 283 30 8 2895 3172 148129580 148129857 4.570000e-75 292.0
21 TraesCS2A01G164000 chr4B 85.866 283 30 8 2895 3172 148162646 148162923 4.570000e-75 292.0
22 TraesCS2A01G164000 chr6A 85.461 282 33 6 2895 3172 196842115 196841838 2.130000e-73 287.0
23 TraesCS2A01G164000 chr6A 88.889 63 4 3 449 509 91897957 91897896 1.800000e-09 75.0
24 TraesCS2A01G164000 chr4A 91.071 56 3 2 455 509 567686306 567686252 1.800000e-09 75.0
25 TraesCS2A01G164000 chr3A 90.741 54 5 0 455 508 97494541 97494488 6.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G164000 chr2A 116156202 116160869 4667 False 8621.000000 8621 100.000000 1 4668 1 chr2A.!!$F1 4667
1 TraesCS2A01G164000 chr2B 165273044 165276457 3413 False 1489.666667 2763 92.057000 750 4146 3 chr2B.!!$F2 3396
2 TraesCS2A01G164000 chr2D 114769659 114774079 4420 False 827.142857 2045 92.074571 344 4664 7 chr2D.!!$F1 4320
3 TraesCS2A01G164000 chr2D 114801146 114802128 982 False 421.000000 603 90.397500 3742 4488 2 chr2D.!!$F2 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.108774 GCATCTAGGGGCAAGGGTAC 59.891 60.0 2.22 0.00 0.00 3.34 F
1419 1748 0.036022 GGAAGAGAGCAGTGCCTGTT 59.964 55.0 12.58 13.08 33.43 3.16 F
1701 2035 0.111061 TTGGAGGTGCTTGCATCTGT 59.889 50.0 13.53 0.00 0.00 3.41 F
2918 3272 0.166597 ATTCAGTGCGTGCATGTTCG 59.833 50.0 7.93 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2393 0.035725 TCCTCAACATCAGCAGCAGG 60.036 55.0 0.00 0.00 0.00 4.85 R
2807 3161 0.038892 TGCGGACTCGGTAAAGACAC 60.039 55.0 0.00 0.00 36.79 3.67 R
3102 3459 0.039256 TCTGGAAAAAGTGCATGCGC 60.039 50.0 23.64 23.64 39.24 6.09 R
3917 4296 0.249238 TGTGCAACCAAAATGACCGC 60.249 50.0 0.00 0.00 34.36 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.330944 AAATACGAGTCAGTGAACCACA 57.669 40.909 0.00 0.00 36.74 4.17
22 23 4.330944 AATACGAGTCAGTGAACCACAA 57.669 40.909 0.00 0.00 36.74 3.33
23 24 2.684001 ACGAGTCAGTGAACCACAAA 57.316 45.000 0.00 0.00 36.74 2.83
24 25 2.980568 ACGAGTCAGTGAACCACAAAA 58.019 42.857 0.00 0.00 36.74 2.44
25 26 3.340034 ACGAGTCAGTGAACCACAAAAA 58.660 40.909 0.00 0.00 36.74 1.94
26 27 3.126343 ACGAGTCAGTGAACCACAAAAAC 59.874 43.478 0.00 0.00 36.74 2.43
27 28 3.374058 CGAGTCAGTGAACCACAAAAACT 59.626 43.478 0.00 0.00 36.74 2.66
28 29 4.142687 CGAGTCAGTGAACCACAAAAACTT 60.143 41.667 0.00 0.00 36.74 2.66
29 30 5.310720 AGTCAGTGAACCACAAAAACTTC 57.689 39.130 0.00 0.00 36.74 3.01
30 31 4.764823 AGTCAGTGAACCACAAAAACTTCA 59.235 37.500 0.00 0.00 36.74 3.02
31 32 5.418840 AGTCAGTGAACCACAAAAACTTCAT 59.581 36.000 0.00 0.00 36.74 2.57
32 33 5.743872 GTCAGTGAACCACAAAAACTTCATC 59.256 40.000 0.00 0.00 36.74 2.92
33 34 5.417266 TCAGTGAACCACAAAAACTTCATCA 59.583 36.000 0.00 0.00 36.74 3.07
34 35 6.096705 TCAGTGAACCACAAAAACTTCATCAT 59.903 34.615 0.00 0.00 36.74 2.45
35 36 7.284261 TCAGTGAACCACAAAAACTTCATCATA 59.716 33.333 0.00 0.00 36.74 2.15
36 37 7.592533 CAGTGAACCACAAAAACTTCATCATAG 59.407 37.037 0.00 0.00 36.74 2.23
37 38 7.285401 AGTGAACCACAAAAACTTCATCATAGT 59.715 33.333 0.00 0.00 36.74 2.12
38 39 7.379529 GTGAACCACAAAAACTTCATCATAGTG 59.620 37.037 0.00 0.00 34.08 2.74
39 40 6.959639 ACCACAAAAACTTCATCATAGTGT 57.040 33.333 0.00 0.00 0.00 3.55
40 41 6.970484 ACCACAAAAACTTCATCATAGTGTC 58.030 36.000 0.00 0.00 0.00 3.67
41 42 6.772716 ACCACAAAAACTTCATCATAGTGTCT 59.227 34.615 0.00 0.00 0.00 3.41
42 43 7.285401 ACCACAAAAACTTCATCATAGTGTCTT 59.715 33.333 0.00 0.00 0.00 3.01
43 44 7.592533 CCACAAAAACTTCATCATAGTGTCTTG 59.407 37.037 0.00 0.00 0.00 3.02
44 45 8.344831 CACAAAAACTTCATCATAGTGTCTTGA 58.655 33.333 0.00 0.00 0.00 3.02
45 46 8.902806 ACAAAAACTTCATCATAGTGTCTTGAA 58.097 29.630 0.00 0.00 0.00 2.69
46 47 9.734620 CAAAAACTTCATCATAGTGTCTTGAAA 57.265 29.630 0.00 0.00 0.00 2.69
86 87 7.609760 AAAAACCCAAGAAAAGAAACATGAC 57.390 32.000 0.00 0.00 0.00 3.06
87 88 5.930837 AACCCAAGAAAAGAAACATGACA 57.069 34.783 0.00 0.00 0.00 3.58
88 89 5.262588 ACCCAAGAAAAGAAACATGACAC 57.737 39.130 0.00 0.00 0.00 3.67
89 90 4.202010 ACCCAAGAAAAGAAACATGACACG 60.202 41.667 0.00 0.00 0.00 4.49
90 91 4.036262 CCCAAGAAAAGAAACATGACACGA 59.964 41.667 0.00 0.00 0.00 4.35
91 92 5.278463 CCCAAGAAAAGAAACATGACACGAT 60.278 40.000 0.00 0.00 0.00 3.73
92 93 6.072728 CCCAAGAAAAGAAACATGACACGATA 60.073 38.462 0.00 0.00 0.00 2.92
93 94 7.359595 CCAAGAAAAGAAACATGACACGATAA 58.640 34.615 0.00 0.00 0.00 1.75
94 95 7.323656 CCAAGAAAAGAAACATGACACGATAAC 59.676 37.037 0.00 0.00 0.00 1.89
95 96 7.490962 AGAAAAGAAACATGACACGATAACA 57.509 32.000 0.00 0.00 0.00 2.41
96 97 8.099364 AGAAAAGAAACATGACACGATAACAT 57.901 30.769 0.00 0.00 0.00 2.71
97 98 9.214957 AGAAAAGAAACATGACACGATAACATA 57.785 29.630 0.00 0.00 0.00 2.29
98 99 9.820229 GAAAAGAAACATGACACGATAACATAA 57.180 29.630 0.00 0.00 0.00 1.90
99 100 9.825972 AAAAGAAACATGACACGATAACATAAG 57.174 29.630 0.00 0.00 0.00 1.73
100 101 7.005062 AGAAACATGACACGATAACATAAGC 57.995 36.000 0.00 0.00 0.00 3.09
101 102 6.818644 AGAAACATGACACGATAACATAAGCT 59.181 34.615 0.00 0.00 0.00 3.74
102 103 6.589830 AACATGACACGATAACATAAGCTC 57.410 37.500 0.00 0.00 0.00 4.09
103 104 5.660460 ACATGACACGATAACATAAGCTCA 58.340 37.500 0.00 0.00 0.00 4.26
104 105 6.283694 ACATGACACGATAACATAAGCTCAT 58.716 36.000 0.00 0.00 0.00 2.90
105 106 6.763135 ACATGACACGATAACATAAGCTCATT 59.237 34.615 0.00 0.00 0.00 2.57
106 107 7.926018 ACATGACACGATAACATAAGCTCATTA 59.074 33.333 0.00 0.00 0.00 1.90
107 108 7.930513 TGACACGATAACATAAGCTCATTAG 57.069 36.000 0.00 0.00 0.00 1.73
108 109 7.712797 TGACACGATAACATAAGCTCATTAGA 58.287 34.615 0.00 0.00 0.00 2.10
109 110 8.360390 TGACACGATAACATAAGCTCATTAGAT 58.640 33.333 0.00 0.00 0.00 1.98
110 111 8.749841 ACACGATAACATAAGCTCATTAGATC 57.250 34.615 0.00 0.00 0.00 2.75
111 112 7.815068 ACACGATAACATAAGCTCATTAGATCC 59.185 37.037 0.00 0.00 0.00 3.36
112 113 7.814587 CACGATAACATAAGCTCATTAGATCCA 59.185 37.037 0.00 0.00 0.00 3.41
113 114 8.367911 ACGATAACATAAGCTCATTAGATCCAA 58.632 33.333 0.00 0.00 0.00 3.53
114 115 9.208022 CGATAACATAAGCTCATTAGATCCAAA 57.792 33.333 0.00 0.00 0.00 3.28
121 122 7.678947 AAGCTCATTAGATCCAAATAATCGG 57.321 36.000 0.00 0.00 0.00 4.18
122 123 5.645497 AGCTCATTAGATCCAAATAATCGGC 59.355 40.000 0.00 0.00 0.00 5.54
123 124 5.645497 GCTCATTAGATCCAAATAATCGGCT 59.355 40.000 0.00 0.00 0.00 5.52
124 125 6.183360 GCTCATTAGATCCAAATAATCGGCTC 60.183 42.308 0.00 0.00 0.00 4.70
125 126 7.009179 TCATTAGATCCAAATAATCGGCTCT 57.991 36.000 0.00 0.00 32.65 4.09
126 127 6.875726 TCATTAGATCCAAATAATCGGCTCTG 59.124 38.462 0.00 0.00 30.60 3.35
127 128 4.696479 AGATCCAAATAATCGGCTCTGT 57.304 40.909 0.00 0.00 0.00 3.41
128 129 4.384056 AGATCCAAATAATCGGCTCTGTG 58.616 43.478 0.00 0.00 0.00 3.66
129 130 2.288666 TCCAAATAATCGGCTCTGTGC 58.711 47.619 0.00 0.00 41.94 4.57
130 131 2.016318 CCAAATAATCGGCTCTGTGCA 58.984 47.619 3.96 0.00 45.15 4.57
131 132 2.620115 CCAAATAATCGGCTCTGTGCAT 59.380 45.455 3.96 0.00 45.15 3.96
132 133 3.814842 CCAAATAATCGGCTCTGTGCATA 59.185 43.478 3.96 0.00 45.15 3.14
133 134 4.275689 CCAAATAATCGGCTCTGTGCATAA 59.724 41.667 3.96 0.00 45.15 1.90
134 135 5.207768 CAAATAATCGGCTCTGTGCATAAC 58.792 41.667 3.96 0.00 45.15 1.89
135 136 2.698855 AATCGGCTCTGTGCATAACT 57.301 45.000 3.96 0.00 45.15 2.24
136 137 2.231215 ATCGGCTCTGTGCATAACTC 57.769 50.000 3.96 0.00 45.15 3.01
137 138 1.186200 TCGGCTCTGTGCATAACTCT 58.814 50.000 3.96 0.00 45.15 3.24
138 139 1.550524 TCGGCTCTGTGCATAACTCTT 59.449 47.619 3.96 0.00 45.15 2.85
139 140 2.028112 TCGGCTCTGTGCATAACTCTTT 60.028 45.455 3.96 0.00 45.15 2.52
140 141 2.094894 CGGCTCTGTGCATAACTCTTTG 59.905 50.000 3.96 0.00 45.15 2.77
141 142 3.077359 GGCTCTGTGCATAACTCTTTGT 58.923 45.455 3.96 0.00 45.15 2.83
142 143 3.503748 GGCTCTGTGCATAACTCTTTGTT 59.496 43.478 3.96 0.00 45.15 2.83
143 144 4.022849 GGCTCTGTGCATAACTCTTTGTTT 60.023 41.667 3.96 0.00 45.15 2.83
144 145 5.149977 GCTCTGTGCATAACTCTTTGTTTC 58.850 41.667 0.00 0.00 42.31 2.78
145 146 5.689383 TCTGTGCATAACTCTTTGTTTCC 57.311 39.130 0.00 0.00 39.89 3.13
146 147 5.129634 TCTGTGCATAACTCTTTGTTTCCA 58.870 37.500 0.00 0.00 39.89 3.53
147 148 5.769662 TCTGTGCATAACTCTTTGTTTCCAT 59.230 36.000 0.00 0.00 39.89 3.41
148 149 6.265196 TCTGTGCATAACTCTTTGTTTCCATT 59.735 34.615 0.00 0.00 39.89 3.16
149 150 6.215121 TGTGCATAACTCTTTGTTTCCATTG 58.785 36.000 0.00 0.00 39.89 2.82
150 151 5.119125 GTGCATAACTCTTTGTTTCCATTGC 59.881 40.000 0.00 0.00 39.89 3.56
151 152 5.221402 TGCATAACTCTTTGTTTCCATTGCA 60.221 36.000 0.00 0.00 39.89 4.08
152 153 5.119125 GCATAACTCTTTGTTTCCATTGCAC 59.881 40.000 0.00 0.00 39.89 4.57
153 154 3.733443 ACTCTTTGTTTCCATTGCACC 57.267 42.857 0.00 0.00 0.00 5.01
154 155 2.034558 ACTCTTTGTTTCCATTGCACCG 59.965 45.455 0.00 0.00 0.00 4.94
155 156 1.139163 CTTTGTTTCCATTGCACCGC 58.861 50.000 0.00 0.00 0.00 5.68
156 157 0.249657 TTTGTTTCCATTGCACCGCC 60.250 50.000 0.00 0.00 0.00 6.13
157 158 1.395045 TTGTTTCCATTGCACCGCCA 61.395 50.000 0.00 0.00 0.00 5.69
158 159 1.372872 GTTTCCATTGCACCGCCAC 60.373 57.895 0.00 0.00 0.00 5.01
159 160 1.829970 TTTCCATTGCACCGCCACA 60.830 52.632 0.00 0.00 0.00 4.17
160 161 1.395045 TTTCCATTGCACCGCCACAA 61.395 50.000 0.00 0.00 0.00 3.33
161 162 2.049248 CCATTGCACCGCCACAAC 60.049 61.111 0.00 0.00 0.00 3.32
162 163 2.428902 CATTGCACCGCCACAACG 60.429 61.111 0.00 0.00 0.00 4.10
163 164 2.593148 ATTGCACCGCCACAACGA 60.593 55.556 0.00 0.00 34.06 3.85
164 165 2.190170 ATTGCACCGCCACAACGAA 61.190 52.632 0.00 0.00 34.06 3.85
165 166 2.400896 ATTGCACCGCCACAACGAAC 62.401 55.000 0.00 0.00 34.06 3.95
166 167 4.322385 GCACCGCCACAACGAACC 62.322 66.667 0.00 0.00 34.06 3.62
167 168 4.007940 CACCGCCACAACGAACCG 62.008 66.667 0.00 0.00 34.06 4.44
169 170 4.973055 CCGCCACAACGAACCGGA 62.973 66.667 9.46 0.00 41.34 5.14
170 171 3.411351 CGCCACAACGAACCGGAG 61.411 66.667 9.46 0.76 34.06 4.63
171 172 2.280592 GCCACAACGAACCGGAGT 60.281 61.111 9.46 1.54 0.00 3.85
172 173 1.005867 GCCACAACGAACCGGAGTA 60.006 57.895 9.46 0.00 0.00 2.59
173 174 0.600782 GCCACAACGAACCGGAGTAA 60.601 55.000 9.46 0.00 0.00 2.24
174 175 1.942586 GCCACAACGAACCGGAGTAAT 60.943 52.381 9.46 0.00 0.00 1.89
175 176 2.419667 CCACAACGAACCGGAGTAATT 58.580 47.619 9.46 0.00 0.00 1.40
176 177 2.809696 CCACAACGAACCGGAGTAATTT 59.190 45.455 9.46 0.00 0.00 1.82
177 178 3.995705 CCACAACGAACCGGAGTAATTTA 59.004 43.478 9.46 0.00 0.00 1.40
178 179 4.632688 CCACAACGAACCGGAGTAATTTAT 59.367 41.667 9.46 0.00 0.00 1.40
179 180 5.122711 CCACAACGAACCGGAGTAATTTATT 59.877 40.000 9.46 0.00 0.00 1.40
180 181 6.245724 CACAACGAACCGGAGTAATTTATTC 58.754 40.000 9.46 0.00 0.00 1.75
181 182 5.062558 ACAACGAACCGGAGTAATTTATTCG 59.937 40.000 9.46 12.65 42.26 3.34
182 183 3.553105 ACGAACCGGAGTAATTTATTCGC 59.447 43.478 9.46 0.00 40.72 4.70
183 184 3.552699 CGAACCGGAGTAATTTATTCGCA 59.447 43.478 9.46 0.00 32.18 5.10
184 185 4.033129 CGAACCGGAGTAATTTATTCGCAA 59.967 41.667 9.46 0.00 32.18 4.85
185 186 5.446206 CGAACCGGAGTAATTTATTCGCAAA 60.446 40.000 9.46 0.00 32.18 3.68
186 187 5.883503 ACCGGAGTAATTTATTCGCAAAA 57.116 34.783 9.46 0.00 0.00 2.44
187 188 6.256912 ACCGGAGTAATTTATTCGCAAAAA 57.743 33.333 9.46 0.00 0.00 1.94
188 189 6.859017 ACCGGAGTAATTTATTCGCAAAAAT 58.141 32.000 9.46 0.00 0.00 1.82
189 190 7.987649 ACCGGAGTAATTTATTCGCAAAAATA 58.012 30.769 9.46 0.00 0.00 1.40
190 191 7.911727 ACCGGAGTAATTTATTCGCAAAAATAC 59.088 33.333 9.46 0.00 0.00 1.89
191 192 7.377662 CCGGAGTAATTTATTCGCAAAAATACC 59.622 37.037 0.00 0.00 0.00 2.73
192 193 7.911205 CGGAGTAATTTATTCGCAAAAATACCA 59.089 33.333 0.00 0.00 0.00 3.25
193 194 9.744468 GGAGTAATTTATTCGCAAAAATACCAT 57.256 29.630 0.00 0.00 0.00 3.55
202 203 7.462109 TTCGCAAAAATACCATGATTATTGC 57.538 32.000 0.00 2.77 38.73 3.56
203 204 6.804677 TCGCAAAAATACCATGATTATTGCT 58.195 32.000 14.39 0.70 39.65 3.91
204 205 7.935520 TCGCAAAAATACCATGATTATTGCTA 58.064 30.769 14.39 5.67 39.65 3.49
205 206 8.075574 TCGCAAAAATACCATGATTATTGCTAG 58.924 33.333 14.39 0.00 39.65 3.42
206 207 8.075574 CGCAAAAATACCATGATTATTGCTAGA 58.924 33.333 14.39 0.00 39.65 2.43
207 208 9.918630 GCAAAAATACCATGATTATTGCTAGAT 57.081 29.630 0.00 0.00 38.96 1.98
212 213 9.797642 AATACCATGATTATTGCTAGATGTTGA 57.202 29.630 0.00 0.00 0.00 3.18
213 214 7.502120 ACCATGATTATTGCTAGATGTTGAC 57.498 36.000 0.00 0.00 0.00 3.18
214 215 6.203530 ACCATGATTATTGCTAGATGTTGACG 59.796 38.462 0.00 0.00 0.00 4.35
215 216 6.424812 CCATGATTATTGCTAGATGTTGACGA 59.575 38.462 0.00 0.00 0.00 4.20
216 217 7.041848 CCATGATTATTGCTAGATGTTGACGAA 60.042 37.037 0.00 0.00 0.00 3.85
217 218 7.468922 TGATTATTGCTAGATGTTGACGAAG 57.531 36.000 0.00 0.00 0.00 3.79
218 219 7.264947 TGATTATTGCTAGATGTTGACGAAGA 58.735 34.615 0.00 0.00 0.00 2.87
219 220 6.887376 TTATTGCTAGATGTTGACGAAGAC 57.113 37.500 0.00 0.00 0.00 3.01
220 221 4.521130 TTGCTAGATGTTGACGAAGACT 57.479 40.909 0.00 0.00 0.00 3.24
221 222 4.098055 TGCTAGATGTTGACGAAGACTC 57.902 45.455 0.00 0.00 0.00 3.36
222 223 3.759086 TGCTAGATGTTGACGAAGACTCT 59.241 43.478 0.00 0.00 0.00 3.24
223 224 4.941873 TGCTAGATGTTGACGAAGACTCTA 59.058 41.667 0.00 0.00 0.00 2.43
224 225 5.414765 TGCTAGATGTTGACGAAGACTCTAA 59.585 40.000 0.00 0.00 0.00 2.10
225 226 6.072119 TGCTAGATGTTGACGAAGACTCTAAA 60.072 38.462 0.00 0.00 0.00 1.85
226 227 6.807230 GCTAGATGTTGACGAAGACTCTAAAA 59.193 38.462 0.00 0.00 0.00 1.52
227 228 7.489757 GCTAGATGTTGACGAAGACTCTAAAAT 59.510 37.037 0.00 0.00 0.00 1.82
228 229 9.360093 CTAGATGTTGACGAAGACTCTAAAATT 57.640 33.333 0.00 0.00 0.00 1.82
229 230 8.245701 AGATGTTGACGAAGACTCTAAAATTC 57.754 34.615 0.00 0.00 0.00 2.17
230 231 8.091449 AGATGTTGACGAAGACTCTAAAATTCT 58.909 33.333 0.00 0.00 0.00 2.40
231 232 8.608844 ATGTTGACGAAGACTCTAAAATTCTT 57.391 30.769 0.00 0.00 32.14 2.52
232 233 7.851508 TGTTGACGAAGACTCTAAAATTCTTG 58.148 34.615 0.00 0.00 29.54 3.02
233 234 7.709182 TGTTGACGAAGACTCTAAAATTCTTGA 59.291 33.333 0.00 0.00 29.54 3.02
234 235 8.548721 GTTGACGAAGACTCTAAAATTCTTGAA 58.451 33.333 0.00 0.00 29.54 2.69
235 236 8.657074 TGACGAAGACTCTAAAATTCTTGAAA 57.343 30.769 0.00 0.00 29.54 2.69
236 237 9.104965 TGACGAAGACTCTAAAATTCTTGAAAA 57.895 29.630 0.00 0.00 29.54 2.29
245 246 9.794685 CTCTAAAATTCTTGAAAATTCTAGGGC 57.205 33.333 5.08 0.00 32.15 5.19
246 247 8.749354 TCTAAAATTCTTGAAAATTCTAGGGCC 58.251 33.333 0.00 0.00 32.15 5.80
247 248 5.939764 AATTCTTGAAAATTCTAGGGCCC 57.060 39.130 16.46 16.46 32.15 5.80
248 249 3.382083 TCTTGAAAATTCTAGGGCCCC 57.618 47.619 21.43 0.00 32.15 5.80
249 250 2.024369 TCTTGAAAATTCTAGGGCCCCC 60.024 50.000 21.43 0.00 32.15 5.40
250 251 1.388174 TGAAAATTCTAGGGCCCCCA 58.612 50.000 21.43 5.68 38.92 4.96
251 252 1.006639 TGAAAATTCTAGGGCCCCCAC 59.993 52.381 21.43 0.00 38.92 4.61
252 253 0.338467 AAAATTCTAGGGCCCCCACC 59.662 55.000 21.43 0.00 38.92 4.61
253 254 0.555117 AAATTCTAGGGCCCCCACCT 60.555 55.000 21.43 0.62 42.15 4.00
254 255 0.555117 AATTCTAGGGCCCCCACCTT 60.555 55.000 21.43 4.17 39.54 3.50
255 256 0.555117 ATTCTAGGGCCCCCACCTTT 60.555 55.000 21.43 0.00 39.54 3.11
256 257 0.778479 TTCTAGGGCCCCCACCTTTT 60.778 55.000 21.43 0.00 39.54 2.27
257 258 0.121608 TCTAGGGCCCCCACCTTTTA 59.878 55.000 21.43 0.00 39.54 1.52
258 259 1.004436 CTAGGGCCCCCACCTTTTAA 58.996 55.000 21.43 0.00 39.54 1.52
259 260 0.705842 TAGGGCCCCCACCTTTTAAC 59.294 55.000 21.43 0.00 39.54 2.01
260 261 1.156566 GGGCCCCCACCTTTTAACA 59.843 57.895 12.23 0.00 35.81 2.41
261 262 1.189524 GGGCCCCCACCTTTTAACAC 61.190 60.000 12.23 0.00 35.81 3.32
262 263 0.470268 GGCCCCCACCTTTTAACACA 60.470 55.000 0.00 0.00 0.00 3.72
263 264 1.415200 GCCCCCACCTTTTAACACAA 58.585 50.000 0.00 0.00 0.00 3.33
264 265 1.763545 GCCCCCACCTTTTAACACAAA 59.236 47.619 0.00 0.00 0.00 2.83
265 266 2.224185 GCCCCCACCTTTTAACACAAAG 60.224 50.000 0.00 0.00 34.06 2.77
266 267 3.301274 CCCCCACCTTTTAACACAAAGA 58.699 45.455 0.00 0.00 36.03 2.52
267 268 3.901222 CCCCCACCTTTTAACACAAAGAT 59.099 43.478 0.00 0.00 36.03 2.40
268 269 4.262420 CCCCCACCTTTTAACACAAAGATG 60.262 45.833 0.00 0.00 36.03 2.90
269 270 4.262420 CCCCACCTTTTAACACAAAGATGG 60.262 45.833 0.07 0.07 44.56 3.51
270 271 4.306600 CCACCTTTTAACACAAAGATGGC 58.693 43.478 0.00 0.00 40.04 4.40
271 272 4.202202 CCACCTTTTAACACAAAGATGGCA 60.202 41.667 0.00 0.00 40.04 4.92
272 273 5.511202 CCACCTTTTAACACAAAGATGGCAT 60.511 40.000 0.00 0.00 40.04 4.40
273 274 5.634859 CACCTTTTAACACAAAGATGGCATC 59.365 40.000 19.78 19.78 36.03 3.91
274 275 5.539955 ACCTTTTAACACAAAGATGGCATCT 59.460 36.000 24.01 24.01 42.61 2.90
275 276 6.719370 ACCTTTTAACACAAAGATGGCATCTA 59.281 34.615 29.02 9.99 39.08 1.98
276 277 7.094205 ACCTTTTAACACAAAGATGGCATCTAG 60.094 37.037 29.02 24.67 39.08 2.43
277 278 6.757897 TTTAACACAAAGATGGCATCTAGG 57.242 37.500 29.02 24.10 39.08 3.02
278 279 3.287867 ACACAAAGATGGCATCTAGGG 57.712 47.619 29.02 25.58 39.08 3.53
279 280 2.092212 ACACAAAGATGGCATCTAGGGG 60.092 50.000 29.02 25.01 39.08 4.79
280 281 1.133668 ACAAAGATGGCATCTAGGGGC 60.134 52.381 29.02 0.88 39.08 5.80
281 282 1.133699 CAAAGATGGCATCTAGGGGCA 60.134 52.381 29.02 12.56 45.36 5.36
282 283 1.225373 AAGATGGCATCTAGGGGCAA 58.775 50.000 29.02 1.43 44.40 4.52
283 284 0.769873 AGATGGCATCTAGGGGCAAG 59.230 55.000 27.87 0.00 44.40 4.01
284 285 0.251077 GATGGCATCTAGGGGCAAGG 60.251 60.000 20.08 0.00 44.40 3.61
285 286 1.723128 ATGGCATCTAGGGGCAAGGG 61.723 60.000 13.81 0.00 44.40 3.95
286 287 2.386935 GGCATCTAGGGGCAAGGGT 61.387 63.158 8.47 0.00 0.00 4.34
287 288 1.060163 GGCATCTAGGGGCAAGGGTA 61.060 60.000 8.47 0.00 0.00 3.69
288 289 0.108774 GCATCTAGGGGCAAGGGTAC 59.891 60.000 2.22 0.00 0.00 3.34
303 304 2.699251 GGTACCAAAACTTCCTTGCG 57.301 50.000 7.15 0.00 0.00 4.85
304 305 1.268625 GGTACCAAAACTTCCTTGCGG 59.731 52.381 7.15 0.00 0.00 5.69
305 306 0.955905 TACCAAAACTTCCTTGCGGC 59.044 50.000 0.00 0.00 0.00 6.53
306 307 1.371635 CCAAAACTTCCTTGCGGCG 60.372 57.895 0.51 0.51 0.00 6.46
307 308 1.371635 CAAAACTTCCTTGCGGCGG 60.372 57.895 9.78 0.00 0.00 6.13
308 309 3.207547 AAAACTTCCTTGCGGCGGC 62.208 57.895 9.78 9.68 40.52 6.53
317 318 2.425592 TGCGGCGGCAGCTATTAT 59.574 55.556 24.58 0.00 46.21 1.28
318 319 1.227823 TGCGGCGGCAGCTATTATT 60.228 52.632 24.58 0.00 46.21 1.40
319 320 1.207593 GCGGCGGCAGCTATTATTG 59.792 57.895 17.87 0.00 44.37 1.90
320 321 1.868997 CGGCGGCAGCTATTATTGG 59.131 57.895 10.53 0.00 44.37 3.16
321 322 1.577328 CGGCGGCAGCTATTATTGGG 61.577 60.000 10.53 0.00 44.37 4.12
322 323 0.250727 GGCGGCAGCTATTATTGGGA 60.251 55.000 9.17 0.00 44.37 4.37
323 324 1.160137 GCGGCAGCTATTATTGGGAG 58.840 55.000 0.00 0.00 41.01 4.30
324 325 1.543429 GCGGCAGCTATTATTGGGAGT 60.543 52.381 0.00 0.00 41.01 3.85
325 326 2.289444 GCGGCAGCTATTATTGGGAGTA 60.289 50.000 0.00 0.00 41.01 2.59
326 327 3.805807 GCGGCAGCTATTATTGGGAGTAA 60.806 47.826 0.00 0.00 41.01 2.24
327 328 3.746492 CGGCAGCTATTATTGGGAGTAAC 59.254 47.826 0.00 0.00 0.00 2.50
328 329 4.503296 CGGCAGCTATTATTGGGAGTAACT 60.503 45.833 0.00 0.00 0.00 2.24
329 330 4.757149 GGCAGCTATTATTGGGAGTAACTG 59.243 45.833 0.00 0.00 0.00 3.16
330 331 5.454755 GGCAGCTATTATTGGGAGTAACTGA 60.455 44.000 0.00 0.00 0.00 3.41
331 332 5.698545 GCAGCTATTATTGGGAGTAACTGAG 59.301 44.000 0.00 0.00 0.00 3.35
332 333 5.698545 CAGCTATTATTGGGAGTAACTGAGC 59.301 44.000 0.00 0.00 0.00 4.26
333 334 5.604650 AGCTATTATTGGGAGTAACTGAGCT 59.395 40.000 0.00 0.00 0.00 4.09
334 335 5.698545 GCTATTATTGGGAGTAACTGAGCTG 59.301 44.000 0.00 0.00 0.00 4.24
335 336 4.487714 TTATTGGGAGTAACTGAGCTGG 57.512 45.455 0.00 0.00 0.00 4.85
336 337 0.984230 TTGGGAGTAACTGAGCTGGG 59.016 55.000 0.00 0.00 0.00 4.45
337 338 1.222113 GGGAGTAACTGAGCTGGGC 59.778 63.158 0.00 0.00 0.00 5.36
338 339 1.268283 GGGAGTAACTGAGCTGGGCT 61.268 60.000 0.00 0.00 43.88 5.19
347 348 2.996395 AGCTGGGCTCATCTGTGG 59.004 61.111 0.00 0.00 30.62 4.17
348 349 2.124403 GCTGGGCTCATCTGTGGG 60.124 66.667 0.00 0.00 0.00 4.61
372 373 6.483640 GGATTACCGATAGCTCTTGATGTTTT 59.516 38.462 0.00 0.00 0.00 2.43
422 424 8.421249 TTTGTCCTCCTTTGATTTACATGAAT 57.579 30.769 0.00 0.00 0.00 2.57
562 820 6.127619 GGGGAAACATTATCCTTGACTCAAAG 60.128 42.308 0.00 0.00 37.14 2.77
610 868 1.912862 ATACTCCCTCCAGCCCAAAT 58.087 50.000 0.00 0.00 0.00 2.32
619 877 3.768757 CCTCCAGCCCAAATTAATTGACA 59.231 43.478 0.39 0.00 41.85 3.58
622 880 4.220382 TCCAGCCCAAATTAATTGACACAG 59.780 41.667 0.39 0.00 41.85 3.66
710 969 7.878477 TGTCTTTCGTACGAGATACATTTTT 57.122 32.000 18.91 0.00 32.79 1.94
790 1053 7.032377 ACTTTTTGAGTCAGATGAAAAGACC 57.968 36.000 24.53 0.00 38.79 3.85
804 1072 2.511600 GACCGGACCATCAAGCCG 60.512 66.667 9.46 0.00 44.42 5.52
847 1115 4.308458 GCCCGGCCCAAAACAACC 62.308 66.667 0.00 0.00 0.00 3.77
849 1117 1.228613 CCCGGCCCAAAACAACCTA 60.229 57.895 0.00 0.00 0.00 3.08
856 1124 2.036733 GCCCAAAACAACCTACCTTTCC 59.963 50.000 0.00 0.00 0.00 3.13
875 1143 1.900486 CCTGTTCTTCCGAGGGTACTT 59.100 52.381 0.00 0.00 0.00 2.24
876 1144 2.353803 CCTGTTCTTCCGAGGGTACTTG 60.354 54.545 0.00 0.00 0.00 3.16
896 1164 2.962882 GGGGGCCAGTCTCTTTTTC 58.037 57.895 4.39 0.00 0.00 2.29
899 1167 1.614583 GGGGCCAGTCTCTTTTTCCTC 60.615 57.143 4.39 0.00 0.00 3.71
900 1168 1.443802 GGCCAGTCTCTTTTTCCTCG 58.556 55.000 0.00 0.00 0.00 4.63
910 1178 6.319405 AGTCTCTTTTTCCTCGTAGATAGACC 59.681 42.308 0.00 0.00 33.89 3.85
942 1210 1.138247 CTACCCTCCGGTCGTTTCG 59.862 63.158 0.00 0.00 43.29 3.46
947 1215 1.514443 CTCCGGTCGTTTCGCTCTC 60.514 63.158 0.00 0.00 0.00 3.20
1062 1331 1.135068 AAACCACACCCCCATCCGTA 61.135 55.000 0.00 0.00 0.00 4.02
1161 1430 1.880027 GCCAGATCCGGCGATTTTTAT 59.120 47.619 9.30 0.00 43.52 1.40
1196 1465 0.253044 TTTGGGCCGAGAGATGGAAG 59.747 55.000 0.00 0.00 0.00 3.46
1209 1478 4.047822 GAGATGGAAGTAGAATCGCACTG 58.952 47.826 0.00 0.00 0.00 3.66
1228 1497 2.910977 CTGGTAGGTTTAGGGGTCAAGT 59.089 50.000 0.00 0.00 0.00 3.16
1247 1516 2.419057 GCCAGTGGCTTCTGTGTTT 58.581 52.632 27.48 0.00 46.69 2.83
1283 1552 6.734137 TGATTGGGTTATAATTGATGTTCGC 58.266 36.000 0.00 0.00 0.00 4.70
1300 1569 1.067142 TCGCTGCTGTCGAAATAACCT 60.067 47.619 0.00 0.00 32.53 3.50
1305 1574 3.531538 TGCTGTCGAAATAACCTCATCC 58.468 45.455 0.00 0.00 0.00 3.51
1306 1575 3.055458 TGCTGTCGAAATAACCTCATCCA 60.055 43.478 0.00 0.00 0.00 3.41
1307 1576 3.557595 GCTGTCGAAATAACCTCATCCAG 59.442 47.826 0.00 0.00 0.00 3.86
1318 1647 0.742281 CTCATCCAGGTTCTGTGCCG 60.742 60.000 0.00 0.00 0.00 5.69
1334 1663 3.628032 TGTGCCGTCAGATTTTGTTGTTA 59.372 39.130 0.00 0.00 0.00 2.41
1335 1664 4.277174 TGTGCCGTCAGATTTTGTTGTTAT 59.723 37.500 0.00 0.00 0.00 1.89
1337 1666 5.342259 GTGCCGTCAGATTTTGTTGTTATTC 59.658 40.000 0.00 0.00 0.00 1.75
1343 1672 5.048782 TCAGATTTTGTTGTTATTCTGCGCT 60.049 36.000 9.73 0.00 32.57 5.92
1344 1673 6.148645 TCAGATTTTGTTGTTATTCTGCGCTA 59.851 34.615 9.73 0.00 32.57 4.26
1346 1675 5.682943 TTTTGTTGTTATTCTGCGCTACT 57.317 34.783 9.73 0.00 0.00 2.57
1362 1691 0.249531 TACTTTGGTGCGCACGAAGA 60.250 50.000 38.96 27.69 32.79 2.87
1366 1695 3.712881 GGTGCGCACGAAGACACC 61.713 66.667 32.35 14.00 45.22 4.16
1404 1733 4.035675 GGCAGATTTTCATAGGTTCGGAAG 59.964 45.833 0.00 0.00 0.00 3.46
1418 1747 1.676384 GGAAGAGAGCAGTGCCTGT 59.324 57.895 12.58 4.41 33.43 4.00
1419 1748 0.036022 GGAAGAGAGCAGTGCCTGTT 59.964 55.000 12.58 13.08 33.43 3.16
1445 1774 7.240414 TGGCTTTACAACAATTTTTAGTTGC 57.760 32.000 6.35 0.00 46.79 4.17
1463 1792 2.325484 TGCCTGAGTTGTAGAGTTGGA 58.675 47.619 0.00 0.00 0.00 3.53
1470 1799 6.114187 TGAGTTGTAGAGTTGGATTGATGT 57.886 37.500 0.00 0.00 0.00 3.06
1530 1859 7.770801 TGTATATGATTTGCTAGTGTGACAC 57.229 36.000 7.83 7.83 34.10 3.67
1540 1869 6.584185 TGCTAGTGTGACACTATTTCTGTA 57.416 37.500 24.10 10.20 44.49 2.74
1572 1903 6.876257 AGTAAAAGTGACTGTGATCTTCATCC 59.124 38.462 0.00 0.00 0.00 3.51
1574 1905 5.495926 AAGTGACTGTGATCTTCATCCTT 57.504 39.130 0.00 0.00 0.00 3.36
1578 1909 2.507471 ACTGTGATCTTCATCCTTCCCC 59.493 50.000 0.00 0.00 0.00 4.81
1579 1910 1.846439 TGTGATCTTCATCCTTCCCCC 59.154 52.381 0.00 0.00 0.00 5.40
1640 1974 9.606631 TTTTCCATGCATAAAAATGTATAACCC 57.393 29.630 12.68 0.00 0.00 4.11
1646 1980 7.251994 TGCATAAAAATGTATAACCCGTGAAC 58.748 34.615 0.00 0.00 0.00 3.18
1672 2006 3.244181 TGCAACTGAGAACATGAGCTGTA 60.244 43.478 0.00 0.00 36.98 2.74
1680 2014 6.159293 TGAGAACATGAGCTGTACTTGTAAG 58.841 40.000 0.00 0.00 36.98 2.34
1682 2016 4.891992 ACATGAGCTGTACTTGTAAGGT 57.108 40.909 0.00 0.00 35.91 3.50
1691 2025 2.271944 ACTTGTAAGGTTGGAGGTGC 57.728 50.000 0.00 0.00 0.00 5.01
1701 2035 0.111061 TTGGAGGTGCTTGCATCTGT 59.889 50.000 13.53 0.00 0.00 3.41
1712 2046 0.694771 TGCATCTGTTCCTTGCTCCT 59.305 50.000 0.00 0.00 37.28 3.69
1728 2062 3.199727 TGCTCCTGCACCAGTTAATATGA 59.800 43.478 0.00 0.00 45.31 2.15
1730 2064 4.214971 GCTCCTGCACCAGTTAATATGATG 59.785 45.833 0.00 0.00 39.41 3.07
1744 2078 9.224267 AGTTAATATGATGTATGAACTCATGCC 57.776 33.333 2.36 0.00 38.04 4.40
1746 2080 3.817709 TGATGTATGAACTCATGCCGA 57.182 42.857 2.36 0.00 38.04 5.54
1769 2103 4.847198 TCATCTGCTTGCTTAGATTTGGA 58.153 39.130 0.00 0.00 31.53 3.53
1776 2110 3.838244 TGCTTAGATTTGGAGCCGTAT 57.162 42.857 0.00 0.00 35.59 3.06
1779 2113 4.100344 TGCTTAGATTTGGAGCCGTATACA 59.900 41.667 3.32 0.00 35.59 2.29
1783 2117 4.950050 AGATTTGGAGCCGTATACAAGAG 58.050 43.478 3.32 0.00 0.00 2.85
1804 2139 2.192664 TTTGTTAGCCTGCGATTGGA 57.807 45.000 0.00 0.00 0.00 3.53
1813 2148 0.394192 CTGCGATTGGATCCCTAGCA 59.606 55.000 9.90 14.25 0.00 3.49
1863 2200 5.288712 GTGCTCATTTCATGAATCAAAGCTG 59.711 40.000 22.40 9.58 39.11 4.24
1880 2217 1.470890 GCTGACTTCTCTGTCGCTAGT 59.529 52.381 0.00 0.00 39.64 2.57
1887 2224 4.021894 ACTTCTCTGTCGCTAGTTGTTCAT 60.022 41.667 0.00 0.00 0.00 2.57
1917 2254 5.378230 TTGATATTTCATGCTCCAGACCT 57.622 39.130 0.00 0.00 0.00 3.85
1978 2315 2.204090 TCCCACCCAAGGAGGTCC 60.204 66.667 0.00 0.00 38.39 4.46
1990 2327 1.145119 AGGAGGTCCCTGTGGAAAAAC 59.855 52.381 0.00 0.00 45.61 2.43
1992 2329 0.930726 AGGTCCCTGTGGAAAAACCA 59.069 50.000 0.00 0.00 44.07 3.67
2001 2338 2.276732 TGGAAAAACCAGCTGAGGAG 57.723 50.000 17.39 0.00 44.64 3.69
2003 2340 2.174639 TGGAAAAACCAGCTGAGGAGAA 59.825 45.455 17.39 0.00 44.64 2.87
2004 2341 3.222603 GGAAAAACCAGCTGAGGAGAAA 58.777 45.455 17.39 0.00 38.79 2.52
2005 2342 3.829026 GGAAAAACCAGCTGAGGAGAAAT 59.171 43.478 17.39 0.00 38.79 2.17
2006 2343 4.082517 GGAAAAACCAGCTGAGGAGAAATC 60.083 45.833 17.39 2.92 38.79 2.17
2007 2344 4.379302 AAAACCAGCTGAGGAGAAATCT 57.621 40.909 17.39 0.00 0.00 2.40
2011 2348 2.433604 CCAGCTGAGGAGAAATCTGCTA 59.566 50.000 17.39 0.00 46.37 3.49
2012 2349 3.456280 CAGCTGAGGAGAAATCTGCTAC 58.544 50.000 8.42 0.00 46.37 3.58
2013 2350 2.100584 AGCTGAGGAGAAATCTGCTACG 59.899 50.000 4.31 0.78 46.29 3.51
2014 2351 2.099921 GCTGAGGAGAAATCTGCTACGA 59.900 50.000 4.31 0.00 44.95 3.43
2016 2353 4.545610 CTGAGGAGAAATCTGCTACGATC 58.454 47.826 4.31 0.00 44.95 3.69
2022 2374 4.930963 AGAAATCTGCTACGATCACTGAG 58.069 43.478 0.00 0.00 0.00 3.35
2023 2375 3.724508 AATCTGCTACGATCACTGAGG 57.275 47.619 0.00 0.00 0.00 3.86
2041 2393 1.818785 GCCTCACCAGCTGATGAGC 60.819 63.158 30.00 21.45 46.64 4.26
2106 2458 2.934083 GCCAGAAGCGGAAGAAACT 58.066 52.632 0.00 0.00 0.00 2.66
2132 2484 1.720301 CTGCAGAGGAAAGCGATGC 59.280 57.895 8.42 0.00 37.40 3.91
2240 2593 7.395190 AAGTCATTGCTAAACATATGCTGAA 57.605 32.000 1.58 0.00 0.00 3.02
2309 2662 4.979943 TCAAACAAGACATTGCTTCACA 57.020 36.364 0.00 0.00 40.27 3.58
2368 2721 4.340617 TCGCCTCTTGGAAATGGTAAATT 58.659 39.130 0.00 0.00 34.57 1.82
2369 2722 4.157656 TCGCCTCTTGGAAATGGTAAATTG 59.842 41.667 0.00 0.00 34.57 2.32
2526 2879 6.739112 ACTTTGTTTCATGCCTTACTTTCTC 58.261 36.000 0.00 0.00 0.00 2.87
2603 2956 6.234177 AGCATATGGAGATTTGGTAGTTAGC 58.766 40.000 4.56 0.00 0.00 3.09
2632 2986 2.162681 CCCTGCTTACCTTGAACTTGG 58.837 52.381 0.00 0.00 0.00 3.61
2654 3008 4.211374 GGCTAGCAGTGTTGTAATTATCCG 59.789 45.833 18.24 0.00 0.00 4.18
2697 3051 3.370840 ACCTTCCTCATGCAGCAATAA 57.629 42.857 0.00 0.00 0.00 1.40
2787 3141 5.471456 GCCATACATATCCTTTCTGGTCAAG 59.529 44.000 0.00 0.00 37.07 3.02
2823 3177 1.272769 AGCAGTGTCTTTACCGAGTCC 59.727 52.381 0.00 0.00 0.00 3.85
2838 3192 2.915659 TCCGCACGTCCTGAACCT 60.916 61.111 0.00 0.00 0.00 3.50
2849 3203 3.893200 CGTCCTGAACCTGGGTACATATA 59.107 47.826 0.00 0.00 0.00 0.86
2852 3206 6.053650 GTCCTGAACCTGGGTACATATAAAC 58.946 44.000 0.00 0.00 0.00 2.01
2918 3272 0.166597 ATTCAGTGCGTGCATGTTCG 59.833 50.000 7.93 0.00 0.00 3.95
2931 3285 2.787723 GCATGTTCGCAAACTATGTCCG 60.788 50.000 0.00 0.00 36.30 4.79
2934 3288 1.127951 GTTCGCAAACTATGTCCGTGG 59.872 52.381 0.00 0.00 32.36 4.94
3228 3602 2.226200 TCGTTGAGTTGCATGGTTGATG 59.774 45.455 0.00 0.00 34.84 3.07
3326 3700 8.480501 ACTTCATGGCTTATGATAATTTTGCTT 58.519 29.630 5.29 0.00 44.90 3.91
3402 3776 5.221322 TGCTGTGCTATGTAGAATGTCTAGG 60.221 44.000 0.00 0.00 28.01 3.02
3419 3793 5.014123 TGTCTAGGATGATTGGTGAACCTTT 59.986 40.000 0.37 0.00 36.82 3.11
3446 3820 3.557595 CGTGGTCTTGATGGCTATCTTTC 59.442 47.826 11.68 0.03 34.31 2.62
3464 3838 1.675310 CCGAGCTGGTGGCATTTGA 60.675 57.895 0.00 0.00 44.79 2.69
3601 3975 5.692115 TCCTCAGTTTGATAACATGGCTA 57.308 39.130 0.00 0.00 36.70 3.93
3646 4020 1.079127 CGAGCAACGGGAGAATGGT 60.079 57.895 0.00 0.00 38.46 3.55
3649 4023 0.108329 AGCAACGGGAGAATGGTACG 60.108 55.000 0.00 0.00 31.52 3.67
3696 4070 0.109597 GCGCTGGAAGGACAAACATG 60.110 55.000 0.00 0.00 0.00 3.21
3917 4296 4.025401 GCGTGGCACGGTTCAAGG 62.025 66.667 37.33 11.13 42.82 3.61
3946 4325 4.751767 TTTGGTTGCACAGGAAATTTCT 57.248 36.364 17.42 1.61 0.00 2.52
3986 4365 4.737855 TTAGCAACCTAGTTCTAGCAGG 57.262 45.455 1.68 0.00 35.45 4.85
4030 4409 7.609532 CCATTTCATTTCTCCTGTCTTCTAAGT 59.390 37.037 0.00 0.00 0.00 2.24
4146 4525 8.749026 TTACTTGAAATTTGGTGTGGTTACTA 57.251 30.769 0.00 0.00 0.00 1.82
4148 4527 8.927675 ACTTGAAATTTGGTGTGGTTACTATA 57.072 30.769 0.00 0.00 0.00 1.31
4149 4528 9.528489 ACTTGAAATTTGGTGTGGTTACTATAT 57.472 29.630 0.00 0.00 0.00 0.86
4193 4789 7.766278 TGGAATGTGAAAAGTAGCTCTCTATTC 59.234 37.037 0.00 0.00 0.00 1.75
4199 4795 7.952637 GTGAAAAGTAGCTCTCTATTCAAAACG 59.047 37.037 0.00 0.00 30.67 3.60
4271 4914 4.409187 CTCTACTAGGAGGGGGTATGTTC 58.591 52.174 0.99 0.00 0.00 3.18
4338 4984 6.942532 TGTCTAGATGGTTGCCAATATTTC 57.057 37.500 0.00 0.00 36.95 2.17
4369 5015 3.451141 TGACAATTTGGCAACTCAACC 57.549 42.857 1.43 0.00 28.38 3.77
4398 5044 4.826274 TCTAGCCAATGTTAGTCAAGCT 57.174 40.909 0.00 0.00 35.90 3.74
4400 5046 5.661458 TCTAGCCAATGTTAGTCAAGCTAC 58.339 41.667 0.00 0.00 34.46 3.58
4452 5098 6.895782 TGGCTAGCCAAATACAGTATTTAGT 58.104 36.000 34.27 8.21 44.12 2.24
4453 5099 8.025270 TGGCTAGCCAAATACAGTATTTAGTA 57.975 34.615 34.27 3.60 44.12 1.82
4454 5100 8.148351 TGGCTAGCCAAATACAGTATTTAGTAG 58.852 37.037 34.27 16.33 44.12 2.57
4477 5124 3.440522 GGCTAACTTGGGCTCAAACTAAG 59.559 47.826 0.00 0.00 31.77 2.18
4483 5130 0.038310 GGGCTCAAACTAAGCACCCT 59.962 55.000 0.00 0.00 41.66 4.34
4489 5136 3.476552 TCAAACTAAGCACCCTTGTGAG 58.523 45.455 0.00 0.00 45.76 3.51
4495 5142 0.617413 AGCACCCTTGTGAGATGAGG 59.383 55.000 0.00 0.00 45.76 3.86
4529 5176 5.690865 CCTGAGTGGGTTAGCCAAATATTA 58.309 41.667 4.13 0.00 36.17 0.98
4535 5182 6.379988 AGTGGGTTAGCCAAATATTAACTTGG 59.620 38.462 4.13 7.98 44.23 3.61
4572 5422 3.254166 TGAACTTGCCTTCTTGATGCTTC 59.746 43.478 0.00 0.00 0.00 3.86
4580 5430 4.791974 CCTTCTTGATGCTTCTTTGTGTC 58.208 43.478 0.88 0.00 0.00 3.67
4581 5431 4.518211 CCTTCTTGATGCTTCTTTGTGTCT 59.482 41.667 0.88 0.00 0.00 3.41
4582 5432 5.334724 CCTTCTTGATGCTTCTTTGTGTCTC 60.335 44.000 0.88 0.00 0.00 3.36
4583 5433 4.067896 TCTTGATGCTTCTTTGTGTCTCC 58.932 43.478 0.88 0.00 0.00 3.71
4584 5434 3.490439 TGATGCTTCTTTGTGTCTCCA 57.510 42.857 0.88 0.00 0.00 3.86
4585 5435 3.141398 TGATGCTTCTTTGTGTCTCCAC 58.859 45.455 0.88 0.00 42.19 4.02
4595 5445 1.714794 GTGTCTCCACAAGATCACCG 58.285 55.000 0.00 0.00 41.44 4.94
4596 5446 0.608130 TGTCTCCACAAGATCACCGG 59.392 55.000 0.00 0.00 36.11 5.28
4597 5447 0.741221 GTCTCCACAAGATCACCGGC 60.741 60.000 0.00 0.00 36.11 6.13
4598 5448 1.450312 CTCCACAAGATCACCGGCC 60.450 63.158 0.00 0.00 0.00 6.13
4599 5449 1.903877 CTCCACAAGATCACCGGCCT 61.904 60.000 0.00 0.00 0.00 5.19
4600 5450 1.450312 CCACAAGATCACCGGCCTC 60.450 63.158 0.00 0.00 0.00 4.70
4601 5451 1.450312 CACAAGATCACCGGCCTCC 60.450 63.158 0.00 0.00 0.00 4.30
4602 5452 1.613630 ACAAGATCACCGGCCTCCT 60.614 57.895 0.00 0.00 0.00 3.69
4603 5453 1.201429 ACAAGATCACCGGCCTCCTT 61.201 55.000 0.00 0.00 0.00 3.36
4604 5454 0.745845 CAAGATCACCGGCCTCCTTG 60.746 60.000 0.00 7.12 0.00 3.61
4605 5455 0.909610 AAGATCACCGGCCTCCTTGA 60.910 55.000 0.00 0.00 0.00 3.02
4606 5456 0.692419 AGATCACCGGCCTCCTTGAT 60.692 55.000 0.00 1.07 30.04 2.57
4607 5457 0.533755 GATCACCGGCCTCCTTGATG 60.534 60.000 0.00 0.00 28.33 3.07
4608 5458 2.615227 ATCACCGGCCTCCTTGATGC 62.615 60.000 0.00 0.00 0.00 3.91
4609 5459 3.011517 ACCGGCCTCCTTGATGCT 61.012 61.111 0.00 0.00 0.00 3.79
4610 5460 2.273449 CCGGCCTCCTTGATGCTT 59.727 61.111 0.00 0.00 0.00 3.91
4611 5461 2.117156 CCGGCCTCCTTGATGCTTG 61.117 63.158 0.00 0.00 0.00 4.01
4612 5462 1.377725 CGGCCTCCTTGATGCTTGT 60.378 57.895 0.00 0.00 0.00 3.16
4613 5463 0.962356 CGGCCTCCTTGATGCTTGTT 60.962 55.000 0.00 0.00 0.00 2.83
4614 5464 1.260544 GGCCTCCTTGATGCTTGTTT 58.739 50.000 0.00 0.00 0.00 2.83
4615 5465 1.067354 GGCCTCCTTGATGCTTGTTTG 60.067 52.381 0.00 0.00 0.00 2.93
4616 5466 1.670967 GCCTCCTTGATGCTTGTTTGC 60.671 52.381 0.00 0.00 0.00 3.68
4617 5467 1.401931 CCTCCTTGATGCTTGTTTGCG 60.402 52.381 0.00 0.00 35.36 4.85
4618 5468 1.267806 CTCCTTGATGCTTGTTTGCGT 59.732 47.619 0.00 0.00 35.36 5.24
4647 5497 1.135333 GATCACCGACCTCCTCAACTC 59.865 57.143 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.330944 TGTGGTTCACTGACTCGTATTT 57.669 40.909 0.00 0.00 35.11 1.40
1 2 4.330944 TTGTGGTTCACTGACTCGTATT 57.669 40.909 0.00 0.00 35.11 1.89
2 3 4.330944 TTTGTGGTTCACTGACTCGTAT 57.669 40.909 0.00 0.00 35.11 3.06
3 4 3.804786 TTTGTGGTTCACTGACTCGTA 57.195 42.857 0.00 0.00 35.11 3.43
4 5 2.684001 TTTGTGGTTCACTGACTCGT 57.316 45.000 0.00 0.00 35.11 4.18
5 6 3.374058 AGTTTTTGTGGTTCACTGACTCG 59.626 43.478 0.00 0.00 35.11 4.18
6 7 4.965119 AGTTTTTGTGGTTCACTGACTC 57.035 40.909 0.00 0.00 35.11 3.36
7 8 4.764823 TGAAGTTTTTGTGGTTCACTGACT 59.235 37.500 0.00 0.00 35.11 3.41
8 9 5.054390 TGAAGTTTTTGTGGTTCACTGAC 57.946 39.130 0.00 0.00 35.11 3.51
9 10 5.417266 TGATGAAGTTTTTGTGGTTCACTGA 59.583 36.000 0.00 0.00 35.11 3.41
10 11 5.649557 TGATGAAGTTTTTGTGGTTCACTG 58.350 37.500 0.00 0.00 35.11 3.66
11 12 5.913137 TGATGAAGTTTTTGTGGTTCACT 57.087 34.783 0.00 0.00 35.11 3.41
12 13 7.379529 CACTATGATGAAGTTTTTGTGGTTCAC 59.620 37.037 0.00 0.00 31.94 3.18
13 14 7.068103 ACACTATGATGAAGTTTTTGTGGTTCA 59.932 33.333 0.00 0.00 33.61 3.18
14 15 7.425606 ACACTATGATGAAGTTTTTGTGGTTC 58.574 34.615 0.00 0.00 0.00 3.62
15 16 7.285401 AGACACTATGATGAAGTTTTTGTGGTT 59.715 33.333 0.00 0.00 0.00 3.67
16 17 6.772716 AGACACTATGATGAAGTTTTTGTGGT 59.227 34.615 0.00 0.00 0.00 4.16
17 18 7.206981 AGACACTATGATGAAGTTTTTGTGG 57.793 36.000 0.00 0.00 0.00 4.17
18 19 8.344831 TCAAGACACTATGATGAAGTTTTTGTG 58.655 33.333 0.00 0.00 0.00 3.33
19 20 8.450578 TCAAGACACTATGATGAAGTTTTTGT 57.549 30.769 0.00 0.00 0.00 2.83
20 21 9.734620 TTTCAAGACACTATGATGAAGTTTTTG 57.265 29.630 0.00 0.00 32.21 2.44
22 23 9.956720 CTTTTCAAGACACTATGATGAAGTTTT 57.043 29.630 0.00 0.00 32.21 2.43
23 24 9.342308 TCTTTTCAAGACACTATGATGAAGTTT 57.658 29.630 0.00 0.00 32.21 2.66
24 25 8.908786 TCTTTTCAAGACACTATGATGAAGTT 57.091 30.769 0.00 0.00 32.21 2.66
25 26 9.512588 AATCTTTTCAAGACACTATGATGAAGT 57.487 29.630 0.00 0.00 41.01 3.01
26 27 9.985318 GAATCTTTTCAAGACACTATGATGAAG 57.015 33.333 0.00 0.00 41.01 3.02
27 28 8.950210 GGAATCTTTTCAAGACACTATGATGAA 58.050 33.333 0.00 0.00 41.01 2.57
28 29 8.102676 TGGAATCTTTTCAAGACACTATGATGA 58.897 33.333 0.00 0.00 41.01 2.92
29 30 8.180267 GTGGAATCTTTTCAAGACACTATGATG 58.820 37.037 0.00 0.00 41.01 3.07
30 31 8.105829 AGTGGAATCTTTTCAAGACACTATGAT 58.894 33.333 6.50 0.00 39.29 2.45
31 32 7.453393 AGTGGAATCTTTTCAAGACACTATGA 58.547 34.615 6.50 0.00 39.29 2.15
32 33 7.678947 AGTGGAATCTTTTCAAGACACTATG 57.321 36.000 6.50 0.00 39.29 2.23
33 34 7.391833 GGAAGTGGAATCTTTTCAAGACACTAT 59.608 37.037 8.06 1.98 39.82 2.12
34 35 6.710744 GGAAGTGGAATCTTTTCAAGACACTA 59.289 38.462 8.06 0.00 39.82 2.74
35 36 5.532779 GGAAGTGGAATCTTTTCAAGACACT 59.467 40.000 0.00 0.00 41.41 3.55
36 37 5.299279 TGGAAGTGGAATCTTTTCAAGACAC 59.701 40.000 0.00 0.00 41.01 3.67
37 38 5.445069 TGGAAGTGGAATCTTTTCAAGACA 58.555 37.500 0.00 0.00 41.01 3.41
38 39 6.391227 TTGGAAGTGGAATCTTTTCAAGAC 57.609 37.500 0.00 0.00 41.01 3.01
39 40 7.416964 TTTTGGAAGTGGAATCTTTTCAAGA 57.583 32.000 0.00 0.00 42.69 3.02
62 63 7.119116 GTGTCATGTTTCTTTTCTTGGGTTTTT 59.881 33.333 0.00 0.00 0.00 1.94
63 64 6.593770 GTGTCATGTTTCTTTTCTTGGGTTTT 59.406 34.615 0.00 0.00 0.00 2.43
64 65 6.106003 GTGTCATGTTTCTTTTCTTGGGTTT 58.894 36.000 0.00 0.00 0.00 3.27
65 66 5.660460 GTGTCATGTTTCTTTTCTTGGGTT 58.340 37.500 0.00 0.00 0.00 4.11
66 67 4.202010 CGTGTCATGTTTCTTTTCTTGGGT 60.202 41.667 0.00 0.00 0.00 4.51
67 68 4.036262 TCGTGTCATGTTTCTTTTCTTGGG 59.964 41.667 0.00 0.00 0.00 4.12
68 69 5.168526 TCGTGTCATGTTTCTTTTCTTGG 57.831 39.130 0.00 0.00 0.00 3.61
69 70 7.855409 TGTTATCGTGTCATGTTTCTTTTCTTG 59.145 33.333 0.00 0.00 0.00 3.02
70 71 7.925993 TGTTATCGTGTCATGTTTCTTTTCTT 58.074 30.769 0.00 0.00 0.00 2.52
71 72 7.490962 TGTTATCGTGTCATGTTTCTTTTCT 57.509 32.000 0.00 0.00 0.00 2.52
72 73 9.820229 TTATGTTATCGTGTCATGTTTCTTTTC 57.180 29.630 0.00 0.00 0.00 2.29
73 74 9.825972 CTTATGTTATCGTGTCATGTTTCTTTT 57.174 29.630 0.00 0.00 0.00 2.27
74 75 7.962918 GCTTATGTTATCGTGTCATGTTTCTTT 59.037 33.333 0.00 0.00 0.00 2.52
75 76 7.334421 AGCTTATGTTATCGTGTCATGTTTCTT 59.666 33.333 0.00 0.00 0.00 2.52
76 77 6.818644 AGCTTATGTTATCGTGTCATGTTTCT 59.181 34.615 0.00 0.00 0.00 2.52
77 78 7.005062 AGCTTATGTTATCGTGTCATGTTTC 57.995 36.000 0.00 0.00 0.00 2.78
78 79 6.593770 TGAGCTTATGTTATCGTGTCATGTTT 59.406 34.615 0.00 0.00 0.00 2.83
79 80 6.106003 TGAGCTTATGTTATCGTGTCATGTT 58.894 36.000 0.00 0.00 0.00 2.71
80 81 5.660460 TGAGCTTATGTTATCGTGTCATGT 58.340 37.500 0.00 0.00 0.00 3.21
81 82 6.775939 ATGAGCTTATGTTATCGTGTCATG 57.224 37.500 0.00 0.00 0.00 3.07
82 83 8.360390 TCTAATGAGCTTATGTTATCGTGTCAT 58.640 33.333 0.00 0.00 0.00 3.06
83 84 7.712797 TCTAATGAGCTTATGTTATCGTGTCA 58.287 34.615 0.00 0.00 0.00 3.58
84 85 8.749841 ATCTAATGAGCTTATGTTATCGTGTC 57.250 34.615 0.00 0.00 0.00 3.67
85 86 7.815068 GGATCTAATGAGCTTATGTTATCGTGT 59.185 37.037 0.00 0.00 0.00 4.49
86 87 7.814587 TGGATCTAATGAGCTTATGTTATCGTG 59.185 37.037 0.00 0.00 0.00 4.35
87 88 7.896811 TGGATCTAATGAGCTTATGTTATCGT 58.103 34.615 0.00 0.00 0.00 3.73
88 89 8.763049 TTGGATCTAATGAGCTTATGTTATCG 57.237 34.615 0.00 0.00 0.00 2.92
95 96 9.388506 CCGATTATTTGGATCTAATGAGCTTAT 57.611 33.333 0.00 0.00 0.00 1.73
96 97 7.334421 GCCGATTATTTGGATCTAATGAGCTTA 59.666 37.037 0.00 0.00 0.00 3.09
97 98 6.150140 GCCGATTATTTGGATCTAATGAGCTT 59.850 38.462 0.00 0.00 0.00 3.74
98 99 5.645497 GCCGATTATTTGGATCTAATGAGCT 59.355 40.000 0.00 0.00 0.00 4.09
99 100 5.645497 AGCCGATTATTTGGATCTAATGAGC 59.355 40.000 0.00 0.00 0.00 4.26
100 101 7.301068 GAGCCGATTATTTGGATCTAATGAG 57.699 40.000 2.47 0.00 38.58 2.90
107 108 3.058639 GCACAGAGCCGATTATTTGGATC 60.059 47.826 1.53 1.53 41.46 3.36
108 109 2.880890 GCACAGAGCCGATTATTTGGAT 59.119 45.455 0.00 0.00 37.23 3.41
109 110 2.288666 GCACAGAGCCGATTATTTGGA 58.711 47.619 0.00 0.00 37.23 3.53
110 111 2.016318 TGCACAGAGCCGATTATTTGG 58.984 47.619 0.00 0.00 44.83 3.28
111 112 3.976793 ATGCACAGAGCCGATTATTTG 57.023 42.857 0.00 0.00 44.83 2.32
112 113 5.126067 AGTTATGCACAGAGCCGATTATTT 58.874 37.500 0.00 0.00 44.83 1.40
113 114 4.708177 AGTTATGCACAGAGCCGATTATT 58.292 39.130 0.00 0.00 44.83 1.40
114 115 4.039730 AGAGTTATGCACAGAGCCGATTAT 59.960 41.667 0.00 0.00 44.83 1.28
115 116 3.384789 AGAGTTATGCACAGAGCCGATTA 59.615 43.478 0.00 0.00 44.83 1.75
116 117 2.169352 AGAGTTATGCACAGAGCCGATT 59.831 45.455 0.00 0.00 44.83 3.34
117 118 1.759445 AGAGTTATGCACAGAGCCGAT 59.241 47.619 0.00 0.00 44.83 4.18
118 119 1.186200 AGAGTTATGCACAGAGCCGA 58.814 50.000 0.00 0.00 44.83 5.54
119 120 2.015736 AAGAGTTATGCACAGAGCCG 57.984 50.000 0.00 0.00 44.83 5.52
120 121 3.077359 ACAAAGAGTTATGCACAGAGCC 58.923 45.455 0.00 0.00 44.83 4.70
121 122 4.756084 AACAAAGAGTTATGCACAGAGC 57.244 40.909 0.00 0.00 39.09 4.09
122 123 5.239306 TGGAAACAAAGAGTTATGCACAGAG 59.761 40.000 0.00 0.00 40.26 3.35
123 124 5.129634 TGGAAACAAAGAGTTATGCACAGA 58.870 37.500 0.00 0.00 40.26 3.41
124 125 5.437289 TGGAAACAAAGAGTTATGCACAG 57.563 39.130 0.00 0.00 40.26 3.66
140 141 1.372872 GTGGCGGTGCAATGGAAAC 60.373 57.895 0.00 0.00 0.00 2.78
141 142 1.395045 TTGTGGCGGTGCAATGGAAA 61.395 50.000 0.00 0.00 0.00 3.13
142 143 1.829970 TTGTGGCGGTGCAATGGAA 60.830 52.632 0.00 0.00 0.00 3.53
143 144 2.203408 TTGTGGCGGTGCAATGGA 60.203 55.556 0.00 0.00 0.00 3.41
144 145 2.049248 GTTGTGGCGGTGCAATGG 60.049 61.111 0.00 0.00 0.00 3.16
145 146 2.399511 TTCGTTGTGGCGGTGCAATG 62.400 55.000 0.00 0.00 34.06 2.82
146 147 2.190170 TTCGTTGTGGCGGTGCAAT 61.190 52.632 0.00 0.00 0.00 3.56
147 148 2.824489 TTCGTTGTGGCGGTGCAA 60.824 55.556 0.00 0.00 0.00 4.08
148 149 3.578272 GTTCGTTGTGGCGGTGCA 61.578 61.111 0.00 0.00 0.00 4.57
149 150 4.322385 GGTTCGTTGTGGCGGTGC 62.322 66.667 0.00 0.00 0.00 5.01
150 151 4.007940 CGGTTCGTTGTGGCGGTG 62.008 66.667 0.00 0.00 0.00 4.94
152 153 4.973055 TCCGGTTCGTTGTGGCGG 62.973 66.667 0.00 0.00 0.00 6.13
153 154 2.752322 TACTCCGGTTCGTTGTGGCG 62.752 60.000 0.00 0.00 0.00 5.69
154 155 0.600782 TTACTCCGGTTCGTTGTGGC 60.601 55.000 0.00 0.00 0.00 5.01
155 156 2.088950 ATTACTCCGGTTCGTTGTGG 57.911 50.000 0.00 0.00 0.00 4.17
156 157 5.789710 ATAAATTACTCCGGTTCGTTGTG 57.210 39.130 0.00 0.00 0.00 3.33
157 158 5.062558 CGAATAAATTACTCCGGTTCGTTGT 59.937 40.000 0.00 0.00 34.14 3.32
158 159 5.486706 CGAATAAATTACTCCGGTTCGTTG 58.513 41.667 0.00 0.00 34.14 4.10
159 160 4.033243 GCGAATAAATTACTCCGGTTCGTT 59.967 41.667 16.24 2.57 39.14 3.85
160 161 3.553105 GCGAATAAATTACTCCGGTTCGT 59.447 43.478 16.24 8.86 39.14 3.85
161 162 3.552699 TGCGAATAAATTACTCCGGTTCG 59.447 43.478 12.18 12.18 39.71 3.95
162 163 5.473796 TTGCGAATAAATTACTCCGGTTC 57.526 39.130 0.00 0.00 0.00 3.62
163 164 5.883503 TTTGCGAATAAATTACTCCGGTT 57.116 34.783 0.00 0.00 0.00 4.44
164 165 5.883503 TTTTGCGAATAAATTACTCCGGT 57.116 34.783 0.00 0.00 0.00 5.28
165 166 7.377662 GGTATTTTTGCGAATAAATTACTCCGG 59.622 37.037 0.00 0.00 0.00 5.14
166 167 7.911205 TGGTATTTTTGCGAATAAATTACTCCG 59.089 33.333 0.00 0.00 0.00 4.63
167 168 9.744468 ATGGTATTTTTGCGAATAAATTACTCC 57.256 29.630 0.00 0.00 0.00 3.85
176 177 9.190858 GCAATAATCATGGTATTTTTGCGAATA 57.809 29.630 14.81 0.00 41.00 1.75
177 178 8.075593 GCAATAATCATGGTATTTTTGCGAAT 57.924 30.769 14.81 0.00 41.00 3.34
178 179 7.462109 GCAATAATCATGGTATTTTTGCGAA 57.538 32.000 14.81 0.00 41.00 4.70
181 182 9.918630 ATCTAGCAATAATCATGGTATTTTTGC 57.081 29.630 18.99 18.99 45.89 3.68
186 187 9.797642 TCAACATCTAGCAATAATCATGGTATT 57.202 29.630 0.00 0.00 31.08 1.89
187 188 9.224267 GTCAACATCTAGCAATAATCATGGTAT 57.776 33.333 0.00 0.00 31.08 2.73
188 189 7.384932 CGTCAACATCTAGCAATAATCATGGTA 59.615 37.037 0.00 0.00 0.00 3.25
189 190 6.203530 CGTCAACATCTAGCAATAATCATGGT 59.796 38.462 0.00 0.00 0.00 3.55
190 191 6.424812 TCGTCAACATCTAGCAATAATCATGG 59.575 38.462 0.00 0.00 0.00 3.66
191 192 7.412137 TCGTCAACATCTAGCAATAATCATG 57.588 36.000 0.00 0.00 0.00 3.07
192 193 7.928167 TCTTCGTCAACATCTAGCAATAATCAT 59.072 33.333 0.00 0.00 0.00 2.45
193 194 7.222805 GTCTTCGTCAACATCTAGCAATAATCA 59.777 37.037 0.00 0.00 0.00 2.57
194 195 7.436673 AGTCTTCGTCAACATCTAGCAATAATC 59.563 37.037 0.00 0.00 0.00 1.75
195 196 7.268586 AGTCTTCGTCAACATCTAGCAATAAT 58.731 34.615 0.00 0.00 0.00 1.28
196 197 6.631016 AGTCTTCGTCAACATCTAGCAATAA 58.369 36.000 0.00 0.00 0.00 1.40
197 198 6.095580 AGAGTCTTCGTCAACATCTAGCAATA 59.904 38.462 0.00 0.00 0.00 1.90
198 199 5.078411 AGTCTTCGTCAACATCTAGCAAT 57.922 39.130 0.00 0.00 0.00 3.56
199 200 4.218635 AGAGTCTTCGTCAACATCTAGCAA 59.781 41.667 0.00 0.00 0.00 3.91
200 201 3.759086 AGAGTCTTCGTCAACATCTAGCA 59.241 43.478 0.00 0.00 0.00 3.49
201 202 4.364415 AGAGTCTTCGTCAACATCTAGC 57.636 45.455 0.00 0.00 0.00 3.42
202 203 8.918961 ATTTTAGAGTCTTCGTCAACATCTAG 57.081 34.615 0.00 0.00 0.00 2.43
203 204 9.355215 GAATTTTAGAGTCTTCGTCAACATCTA 57.645 33.333 0.00 0.00 0.00 1.98
204 205 8.091449 AGAATTTTAGAGTCTTCGTCAACATCT 58.909 33.333 0.00 0.00 25.32 2.90
205 206 8.245701 AGAATTTTAGAGTCTTCGTCAACATC 57.754 34.615 0.00 0.00 25.32 3.06
206 207 8.499162 CAAGAATTTTAGAGTCTTCGTCAACAT 58.501 33.333 0.00 0.00 40.47 2.71
207 208 7.709182 TCAAGAATTTTAGAGTCTTCGTCAACA 59.291 33.333 0.00 0.00 40.47 3.33
208 209 8.073355 TCAAGAATTTTAGAGTCTTCGTCAAC 57.927 34.615 0.00 0.00 40.47 3.18
209 210 8.657074 TTCAAGAATTTTAGAGTCTTCGTCAA 57.343 30.769 0.00 0.00 40.47 3.18
210 211 8.657074 TTTCAAGAATTTTAGAGTCTTCGTCA 57.343 30.769 0.00 0.00 40.47 4.35
219 220 9.794685 GCCCTAGAATTTTCAAGAATTTTAGAG 57.205 33.333 8.58 0.00 36.53 2.43
220 221 8.749354 GGCCCTAGAATTTTCAAGAATTTTAGA 58.251 33.333 0.00 0.00 36.53 2.10
221 222 7.981789 GGGCCCTAGAATTTTCAAGAATTTTAG 59.018 37.037 17.04 0.00 35.27 1.85
222 223 7.093068 GGGGCCCTAGAATTTTCAAGAATTTTA 60.093 37.037 24.38 0.00 29.75 1.52
223 224 6.296432 GGGGCCCTAGAATTTTCAAGAATTTT 60.296 38.462 24.38 0.00 29.75 1.82
224 225 5.189736 GGGGCCCTAGAATTTTCAAGAATTT 59.810 40.000 24.38 0.00 29.75 1.82
225 226 4.716784 GGGGCCCTAGAATTTTCAAGAATT 59.283 41.667 24.38 0.00 32.16 2.17
226 227 4.290093 GGGGCCCTAGAATTTTCAAGAAT 58.710 43.478 24.38 0.00 0.00 2.40
227 228 3.565670 GGGGGCCCTAGAATTTTCAAGAA 60.566 47.826 24.38 0.00 0.00 2.52
228 229 2.024369 GGGGGCCCTAGAATTTTCAAGA 60.024 50.000 24.38 0.00 0.00 3.02
229 230 2.292192 TGGGGGCCCTAGAATTTTCAAG 60.292 50.000 24.38 0.00 36.94 3.02
230 231 1.719378 TGGGGGCCCTAGAATTTTCAA 59.281 47.619 24.38 0.00 36.94 2.69
231 232 1.006639 GTGGGGGCCCTAGAATTTTCA 59.993 52.381 24.38 5.27 36.94 2.69
232 233 1.688311 GGTGGGGGCCCTAGAATTTTC 60.688 57.143 24.38 1.65 36.94 2.29
233 234 0.338467 GGTGGGGGCCCTAGAATTTT 59.662 55.000 24.38 0.00 36.94 1.82
234 235 0.555117 AGGTGGGGGCCCTAGAATTT 60.555 55.000 24.38 0.00 36.94 1.82
235 236 0.555117 AAGGTGGGGGCCCTAGAATT 60.555 55.000 24.38 8.49 36.94 2.17
236 237 0.555117 AAAGGTGGGGGCCCTAGAAT 60.555 55.000 24.38 1.48 36.94 2.40
237 238 0.778479 AAAAGGTGGGGGCCCTAGAA 60.778 55.000 24.38 2.79 36.94 2.10
238 239 0.121608 TAAAAGGTGGGGGCCCTAGA 59.878 55.000 24.38 3.64 36.94 2.43
239 240 1.004436 TTAAAAGGTGGGGGCCCTAG 58.996 55.000 24.38 0.00 36.94 3.02
240 241 0.705842 GTTAAAAGGTGGGGGCCCTA 59.294 55.000 24.38 15.40 36.94 3.53
241 242 1.373044 TGTTAAAAGGTGGGGGCCCT 61.373 55.000 24.38 2.37 36.94 5.19
242 243 1.156566 TGTTAAAAGGTGGGGGCCC 59.843 57.895 15.76 15.76 0.00 5.80
243 244 0.470268 TGTGTTAAAAGGTGGGGGCC 60.470 55.000 0.00 0.00 0.00 5.80
244 245 1.415200 TTGTGTTAAAAGGTGGGGGC 58.585 50.000 0.00 0.00 0.00 5.80
245 246 3.301274 TCTTTGTGTTAAAAGGTGGGGG 58.699 45.455 0.00 0.00 37.67 5.40
246 247 4.881920 CATCTTTGTGTTAAAAGGTGGGG 58.118 43.478 2.64 0.00 42.24 4.96
249 250 4.942852 TGCCATCTTTGTGTTAAAAGGTG 58.057 39.130 3.47 3.47 44.48 4.00
250 251 5.539955 AGATGCCATCTTTGTGTTAAAAGGT 59.460 36.000 0.08 0.00 35.76 3.50
251 252 6.029346 AGATGCCATCTTTGTGTTAAAAGG 57.971 37.500 0.08 0.00 35.76 3.11
252 253 7.253422 CCTAGATGCCATCTTTGTGTTAAAAG 58.747 38.462 13.32 0.00 40.76 2.27
253 254 6.152661 CCCTAGATGCCATCTTTGTGTTAAAA 59.847 38.462 13.32 0.00 40.76 1.52
254 255 5.652014 CCCTAGATGCCATCTTTGTGTTAAA 59.348 40.000 13.32 0.00 40.76 1.52
255 256 5.192927 CCCTAGATGCCATCTTTGTGTTAA 58.807 41.667 13.32 0.00 40.76 2.01
256 257 4.385199 CCCCTAGATGCCATCTTTGTGTTA 60.385 45.833 13.32 0.00 40.76 2.41
257 258 3.624777 CCCTAGATGCCATCTTTGTGTT 58.375 45.455 13.32 0.00 40.76 3.32
258 259 2.092212 CCCCTAGATGCCATCTTTGTGT 60.092 50.000 13.32 0.00 40.76 3.72
259 260 2.579873 CCCCTAGATGCCATCTTTGTG 58.420 52.381 13.32 1.63 40.76 3.33
260 261 1.133668 GCCCCTAGATGCCATCTTTGT 60.134 52.381 13.32 0.00 40.76 2.83
261 262 1.133699 TGCCCCTAGATGCCATCTTTG 60.134 52.381 13.32 6.48 40.76 2.77
262 263 1.225373 TGCCCCTAGATGCCATCTTT 58.775 50.000 13.32 0.00 40.76 2.52
263 264 1.144503 CTTGCCCCTAGATGCCATCTT 59.855 52.381 13.32 0.00 40.76 2.40
264 265 0.769873 CTTGCCCCTAGATGCCATCT 59.230 55.000 12.62 12.62 43.33 2.90
265 266 0.251077 CCTTGCCCCTAGATGCCATC 60.251 60.000 0.00 0.00 0.00 3.51
266 267 1.723128 CCCTTGCCCCTAGATGCCAT 61.723 60.000 0.00 0.00 0.00 4.40
267 268 2.386100 CCCTTGCCCCTAGATGCCA 61.386 63.158 0.00 0.00 0.00 4.92
268 269 1.060163 TACCCTTGCCCCTAGATGCC 61.060 60.000 0.00 0.00 0.00 4.40
269 270 0.108774 GTACCCTTGCCCCTAGATGC 59.891 60.000 0.00 0.00 0.00 3.91
270 271 0.765510 GGTACCCTTGCCCCTAGATG 59.234 60.000 0.00 0.00 0.00 2.90
271 272 0.345502 TGGTACCCTTGCCCCTAGAT 59.654 55.000 10.07 0.00 0.00 1.98
272 273 0.119561 TTGGTACCCTTGCCCCTAGA 59.880 55.000 10.07 0.00 0.00 2.43
273 274 0.996583 TTTGGTACCCTTGCCCCTAG 59.003 55.000 10.07 0.00 0.00 3.02
274 275 1.075861 GTTTTGGTACCCTTGCCCCTA 59.924 52.381 10.07 0.00 0.00 3.53
275 276 0.178944 GTTTTGGTACCCTTGCCCCT 60.179 55.000 10.07 0.00 0.00 4.79
276 277 0.178944 AGTTTTGGTACCCTTGCCCC 60.179 55.000 10.07 0.00 0.00 5.80
277 278 1.616865 GAAGTTTTGGTACCCTTGCCC 59.383 52.381 10.07 0.00 0.00 5.36
278 279 1.616865 GGAAGTTTTGGTACCCTTGCC 59.383 52.381 10.07 5.61 0.00 4.52
279 280 2.594131 AGGAAGTTTTGGTACCCTTGC 58.406 47.619 10.07 10.50 0.00 4.01
280 281 4.584327 CAAGGAAGTTTTGGTACCCTTG 57.416 45.455 10.07 8.99 42.86 3.61
281 282 2.963101 GCAAGGAAGTTTTGGTACCCTT 59.037 45.455 10.07 5.06 34.63 3.95
282 283 2.594131 GCAAGGAAGTTTTGGTACCCT 58.406 47.619 10.07 0.00 0.00 4.34
283 284 1.268625 CGCAAGGAAGTTTTGGTACCC 59.731 52.381 10.07 0.00 0.00 3.69
284 285 2.699251 CGCAAGGAAGTTTTGGTACC 57.301 50.000 4.43 4.43 0.00 3.34
298 299 1.230635 ATAATAGCTGCCGCCGCAAG 61.231 55.000 9.59 0.00 46.66 4.01
299 300 0.817634 AATAATAGCTGCCGCCGCAA 60.818 50.000 9.59 0.00 46.66 4.85
300 301 1.227823 AATAATAGCTGCCGCCGCA 60.228 52.632 9.59 0.00 44.78 5.69
301 302 1.207593 CAATAATAGCTGCCGCCGC 59.792 57.895 0.00 0.00 36.60 6.53
302 303 1.577328 CCCAATAATAGCTGCCGCCG 61.577 60.000 0.00 0.00 36.60 6.46
303 304 0.250727 TCCCAATAATAGCTGCCGCC 60.251 55.000 0.00 0.00 36.60 6.13
304 305 1.160137 CTCCCAATAATAGCTGCCGC 58.840 55.000 0.00 0.00 0.00 6.53
305 306 2.550830 ACTCCCAATAATAGCTGCCG 57.449 50.000 0.00 0.00 0.00 5.69
306 307 4.757149 CAGTTACTCCCAATAATAGCTGCC 59.243 45.833 0.00 0.00 0.00 4.85
307 308 5.611374 TCAGTTACTCCCAATAATAGCTGC 58.389 41.667 0.00 0.00 0.00 5.25
308 309 5.698545 GCTCAGTTACTCCCAATAATAGCTG 59.301 44.000 0.00 0.00 0.00 4.24
309 310 5.604650 AGCTCAGTTACTCCCAATAATAGCT 59.395 40.000 0.00 0.00 0.00 3.32
310 311 5.698545 CAGCTCAGTTACTCCCAATAATAGC 59.301 44.000 0.00 0.00 0.00 2.97
311 312 6.226787 CCAGCTCAGTTACTCCCAATAATAG 58.773 44.000 0.00 0.00 0.00 1.73
312 313 5.071788 CCCAGCTCAGTTACTCCCAATAATA 59.928 44.000 0.00 0.00 0.00 0.98
313 314 4.141390 CCCAGCTCAGTTACTCCCAATAAT 60.141 45.833 0.00 0.00 0.00 1.28
314 315 3.199946 CCCAGCTCAGTTACTCCCAATAA 59.800 47.826 0.00 0.00 0.00 1.40
315 316 2.771943 CCCAGCTCAGTTACTCCCAATA 59.228 50.000 0.00 0.00 0.00 1.90
316 317 1.561542 CCCAGCTCAGTTACTCCCAAT 59.438 52.381 0.00 0.00 0.00 3.16
317 318 0.984230 CCCAGCTCAGTTACTCCCAA 59.016 55.000 0.00 0.00 0.00 4.12
318 319 1.553690 GCCCAGCTCAGTTACTCCCA 61.554 60.000 0.00 0.00 0.00 4.37
319 320 1.222113 GCCCAGCTCAGTTACTCCC 59.778 63.158 0.00 0.00 0.00 4.30
320 321 2.291856 AGCCCAGCTCAGTTACTCC 58.708 57.895 0.00 0.00 30.62 3.85
330 331 2.677289 CCCACAGATGAGCCCAGCT 61.677 63.158 0.00 0.00 43.88 4.24
331 332 1.992519 ATCCCACAGATGAGCCCAGC 61.993 60.000 0.00 0.00 32.41 4.85
332 333 0.549950 AATCCCACAGATGAGCCCAG 59.450 55.000 0.00 0.00 34.56 4.45
333 334 1.490490 GTAATCCCACAGATGAGCCCA 59.510 52.381 0.00 0.00 34.56 5.36
334 335 1.202818 GGTAATCCCACAGATGAGCCC 60.203 57.143 0.00 0.00 34.56 5.19
335 336 1.541233 CGGTAATCCCACAGATGAGCC 60.541 57.143 0.00 0.00 34.56 4.70
336 337 1.412710 TCGGTAATCCCACAGATGAGC 59.587 52.381 0.00 0.00 34.56 4.26
337 338 4.619394 GCTATCGGTAATCCCACAGATGAG 60.619 50.000 0.00 0.00 34.75 2.90
338 339 3.258372 GCTATCGGTAATCCCACAGATGA 59.742 47.826 0.00 0.00 34.75 2.92
339 340 3.259374 AGCTATCGGTAATCCCACAGATG 59.741 47.826 0.00 0.00 34.75 2.90
340 341 3.511477 AGCTATCGGTAATCCCACAGAT 58.489 45.455 0.00 0.00 37.20 2.90
341 342 2.891580 GAGCTATCGGTAATCCCACAGA 59.108 50.000 0.00 0.00 0.00 3.41
342 343 2.894126 AGAGCTATCGGTAATCCCACAG 59.106 50.000 0.00 0.00 0.00 3.66
343 344 2.958818 AGAGCTATCGGTAATCCCACA 58.041 47.619 0.00 0.00 0.00 4.17
344 345 3.321111 TCAAGAGCTATCGGTAATCCCAC 59.679 47.826 0.00 0.00 0.00 4.61
345 346 3.572642 TCAAGAGCTATCGGTAATCCCA 58.427 45.455 0.00 0.00 0.00 4.37
346 347 4.021016 ACATCAAGAGCTATCGGTAATCCC 60.021 45.833 0.00 0.00 0.00 3.85
347 348 5.140747 ACATCAAGAGCTATCGGTAATCC 57.859 43.478 0.00 0.00 0.00 3.01
348 349 7.484035 AAAACATCAAGAGCTATCGGTAATC 57.516 36.000 0.00 0.00 0.00 1.75
385 386 9.981114 TCAAAGGAGGACAAAAAGAAAATATTC 57.019 29.630 0.00 0.00 35.70 1.75
399 401 8.421249 AAATTCATGTAAATCAAAGGAGGACA 57.579 30.769 0.00 0.00 0.00 4.02
449 451 8.888716 GGCTTCAAAGAAAAATTTCCTACAAAA 58.111 29.630 2.37 0.00 37.92 2.44
458 460 6.186957 ACCAAAGGGCTTCAAAGAAAAATTT 58.813 32.000 0.00 0.00 37.90 1.82
461 463 4.835284 ACCAAAGGGCTTCAAAGAAAAA 57.165 36.364 0.00 0.00 37.90 1.94
539 547 7.687941 TCTTTGAGTCAAGGATAATGTTTCC 57.312 36.000 13.28 0.00 0.00 3.13
540 548 9.965824 TTTTCTTTGAGTCAAGGATAATGTTTC 57.034 29.630 17.41 0.00 30.01 2.78
549 807 7.341769 TGGATTTTCTTTTCTTTGAGTCAAGGA 59.658 33.333 13.28 13.28 0.00 3.36
562 820 9.927668 TGGTTCATAAGATTGGATTTTCTTTTC 57.072 29.630 0.00 0.00 34.22 2.29
610 868 9.826574 ACTTTGTACTAAGTCTGTGTCAATTAA 57.173 29.630 15.68 0.00 33.12 1.40
619 877 5.221661 CCCTCCAACTTTGTACTAAGTCTGT 60.222 44.000 20.50 5.30 37.37 3.41
622 880 5.011840 ACTCCCTCCAACTTTGTACTAAGTC 59.988 44.000 20.50 0.00 37.37 3.01
710 969 7.664552 TGTATCTCGTAGGAATCCCTAAAAA 57.335 36.000 0.00 0.00 46.06 1.94
711 970 7.850935 ATGTATCTCGTAGGAATCCCTAAAA 57.149 36.000 0.00 0.00 46.06 1.52
712 971 7.850935 AATGTATCTCGTAGGAATCCCTAAA 57.149 36.000 0.00 0.00 46.06 1.85
790 1053 0.953471 TGTTTCGGCTTGATGGTCCG 60.953 55.000 0.00 0.00 44.16 4.79
804 1072 1.462869 CGACACGGCCGTTTATGTTTC 60.463 52.381 32.11 14.54 0.00 2.78
847 1115 3.368531 CCTCGGAAGAACAGGAAAGGTAG 60.369 52.174 0.00 0.00 41.32 3.18
849 1117 1.348036 CCTCGGAAGAACAGGAAAGGT 59.652 52.381 0.00 0.00 41.32 3.50
856 1124 2.353803 CCAAGTACCCTCGGAAGAACAG 60.354 54.545 0.00 0.00 41.32 3.16
882 1150 2.171341 ACGAGGAAAAAGAGACTGGC 57.829 50.000 0.00 0.00 0.00 4.85
900 1168 0.388294 GGTGGGCGTGGTCTATCTAC 59.612 60.000 0.00 0.00 0.00 2.59
910 1178 2.125512 GTAGAGCTGGTGGGCGTG 60.126 66.667 0.00 0.00 37.29 5.34
942 1210 2.561037 GCGAGCTAGAGGGGAGAGC 61.561 68.421 0.00 0.00 36.42 4.09
947 1215 3.922640 GGCTGCGAGCTAGAGGGG 61.923 72.222 0.00 0.00 41.99 4.79
1053 1322 0.882042 GCAGAGTGCATACGGATGGG 60.882 60.000 10.28 0.00 44.26 4.00
1153 1422 1.407618 GGCCACGGGGTGATAAAAATC 59.592 52.381 5.12 0.00 35.23 2.17
1196 1465 3.521947 AACCTACCAGTGCGATTCTAC 57.478 47.619 0.00 0.00 0.00 2.59
1209 1478 2.617276 GCACTTGACCCCTAAACCTACC 60.617 54.545 0.00 0.00 0.00 3.18
1247 1516 0.749091 CCCAATCAGCTCCAATCGCA 60.749 55.000 0.00 0.00 0.00 5.10
1283 1552 3.557595 GGATGAGGTTATTTCGACAGCAG 59.442 47.826 0.00 0.00 0.00 4.24
1300 1569 1.296392 CGGCACAGAACCTGGATGA 59.704 57.895 0.00 0.00 35.51 2.92
1305 1574 1.367471 TCTGACGGCACAGAACCTG 59.633 57.895 8.56 0.00 42.79 4.00
1306 1575 3.870955 TCTGACGGCACAGAACCT 58.129 55.556 8.56 0.00 42.79 3.50
1318 1647 5.059710 GCGCAGAATAACAACAAAATCTGAC 59.940 40.000 0.30 0.00 37.14 3.51
1334 1663 0.804989 GCACCAAAGTAGCGCAGAAT 59.195 50.000 11.47 0.00 0.00 2.40
1335 1664 1.565156 CGCACCAAAGTAGCGCAGAA 61.565 55.000 11.47 0.00 45.14 3.02
1337 1666 2.476051 CGCACCAAAGTAGCGCAG 59.524 61.111 11.47 0.00 45.14 5.18
1343 1672 0.249531 TCTTCGTGCGCACCAAAGTA 60.250 50.000 32.48 22.83 0.00 2.24
1344 1673 1.522806 TCTTCGTGCGCACCAAAGT 60.523 52.632 32.48 0.00 0.00 2.66
1346 1675 1.815840 TGTCTTCGTGCGCACCAAA 60.816 52.632 33.23 25.06 0.00 3.28
1355 1684 0.172578 TATGGAGCGGTGTCTTCGTG 59.827 55.000 0.00 0.00 0.00 4.35
1362 1691 2.643551 CCAAATTCTATGGAGCGGTGT 58.356 47.619 0.00 0.00 40.56 4.16
1366 1695 2.564771 TCTGCCAAATTCTATGGAGCG 58.435 47.619 0.00 0.00 40.56 5.03
1419 1748 8.178313 GCAACTAAAAATTGTTGTAAAGCCAAA 58.822 29.630 7.85 0.00 43.66 3.28
1445 1774 5.152623 TCAATCCAACTCTACAACTCAGG 57.847 43.478 0.00 0.00 0.00 3.86
1498 1827 9.313118 CACTAGCAAATCATATACAACAGTGTA 57.687 33.333 0.00 0.00 44.29 2.90
1499 1828 7.824289 ACACTAGCAAATCATATACAACAGTGT 59.176 33.333 0.00 0.00 42.09 3.55
1500 1829 8.118607 CACACTAGCAAATCATATACAACAGTG 58.881 37.037 0.00 0.00 35.72 3.66
1501 1830 8.040727 TCACACTAGCAAATCATATACAACAGT 58.959 33.333 0.00 0.00 0.00 3.55
1502 1831 8.331022 GTCACACTAGCAAATCATATACAACAG 58.669 37.037 0.00 0.00 0.00 3.16
1521 1850 9.772973 TTGTAATTACAGAAATAGTGTCACACT 57.227 29.630 16.42 16.42 41.55 3.55
1540 1869 9.561069 AGATCACAGTCACTTTTACTTGTAATT 57.439 29.630 0.00 0.00 0.00 1.40
1551 1880 5.495926 AGGATGAAGATCACAGTCACTTT 57.504 39.130 0.00 0.00 0.00 2.66
1554 1883 4.187694 GGAAGGATGAAGATCACAGTCAC 58.812 47.826 0.00 0.00 0.00 3.67
1558 1887 2.158696 GGGGGAAGGATGAAGATCACAG 60.159 54.545 0.00 0.00 0.00 3.66
1640 1974 0.583438 CTCAGTTGCAGTGGTTCACG 59.417 55.000 0.00 0.00 39.64 4.35
1646 1980 2.483106 CTCATGTTCTCAGTTGCAGTGG 59.517 50.000 0.00 0.00 0.00 4.00
1672 2006 1.774856 AGCACCTCCAACCTTACAAGT 59.225 47.619 0.00 0.00 0.00 3.16
1680 2014 0.610232 AGATGCAAGCACCTCCAACC 60.610 55.000 0.00 0.00 0.00 3.77
1682 2016 0.111061 ACAGATGCAAGCACCTCCAA 59.889 50.000 0.00 0.00 0.00 3.53
1691 2025 1.471684 GGAGCAAGGAACAGATGCAAG 59.528 52.381 0.00 0.00 42.45 4.01
1712 2046 7.992608 AGTTCATACATCATATTAACTGGTGCA 59.007 33.333 1.04 0.00 0.00 4.57
1722 2056 6.466812 TCGGCATGAGTTCATACATCATATT 58.533 36.000 0.00 0.00 34.26 1.28
1728 2062 4.341366 TGATCGGCATGAGTTCATACAT 57.659 40.909 0.00 0.00 34.26 2.29
1730 2064 4.388165 CAGATGATCGGCATGAGTTCATAC 59.612 45.833 0.00 1.75 37.34 2.39
1743 2077 3.103447 TCTAAGCAAGCAGATGATCGG 57.897 47.619 0.00 0.00 0.00 4.18
1744 2078 5.441543 CAAATCTAAGCAAGCAGATGATCG 58.558 41.667 0.00 0.00 31.87 3.69
1746 2080 5.443283 TCCAAATCTAAGCAAGCAGATGAT 58.557 37.500 0.00 0.00 31.87 2.45
1769 2103 5.753921 GCTAACAAATCTCTTGTATACGGCT 59.246 40.000 0.00 0.00 31.50 5.52
1776 2110 3.932710 CGCAGGCTAACAAATCTCTTGTA 59.067 43.478 0.00 0.00 31.50 2.41
1779 2113 3.334583 TCGCAGGCTAACAAATCTCTT 57.665 42.857 0.00 0.00 0.00 2.85
1783 2117 2.682856 TCCAATCGCAGGCTAACAAATC 59.317 45.455 0.00 0.00 0.00 2.17
1804 2139 9.205513 ACAGAAATTAAAATTCATGCTAGGGAT 57.794 29.630 7.01 0.00 0.00 3.85
1863 2200 3.562567 ACAACTAGCGACAGAGAAGTC 57.437 47.619 0.00 0.00 35.19 3.01
1917 2254 5.048991 GGCGGATTTCAAGTTCTCAAAACTA 60.049 40.000 0.00 0.00 0.00 2.24
1978 2315 1.610522 CTCAGCTGGTTTTTCCACAGG 59.389 52.381 15.13 0.00 41.93 4.00
1990 2327 1.209990 AGCAGATTTCTCCTCAGCTGG 59.790 52.381 15.13 4.45 34.61 4.85
1992 2329 2.100584 CGTAGCAGATTTCTCCTCAGCT 59.899 50.000 0.00 0.00 38.74 4.24
1996 2333 4.037446 AGTGATCGTAGCAGATTTCTCCTC 59.963 45.833 0.00 0.00 0.00 3.71
1997 2334 3.957497 AGTGATCGTAGCAGATTTCTCCT 59.043 43.478 0.00 0.00 0.00 3.69
1999 2336 4.926244 TCAGTGATCGTAGCAGATTTCTC 58.074 43.478 0.00 0.00 0.00 2.87
2000 2337 4.202101 CCTCAGTGATCGTAGCAGATTTCT 60.202 45.833 0.00 0.00 0.00 2.52
2001 2338 4.047822 CCTCAGTGATCGTAGCAGATTTC 58.952 47.826 0.00 0.00 0.00 2.17
2003 2340 2.223923 GCCTCAGTGATCGTAGCAGATT 60.224 50.000 0.00 0.00 0.00 2.40
2004 2341 1.339610 GCCTCAGTGATCGTAGCAGAT 59.660 52.381 0.00 0.00 0.00 2.90
2005 2342 0.741326 GCCTCAGTGATCGTAGCAGA 59.259 55.000 0.00 0.00 0.00 4.26
2006 2343 0.249238 GGCCTCAGTGATCGTAGCAG 60.249 60.000 0.00 0.00 0.00 4.24
2007 2344 0.684479 AGGCCTCAGTGATCGTAGCA 60.684 55.000 0.00 0.00 0.00 3.49
2010 2347 1.103803 GTGAGGCCTCAGTGATCGTA 58.896 55.000 35.92 7.71 40.75 3.43
2011 2348 1.608717 GGTGAGGCCTCAGTGATCGT 61.609 60.000 35.92 0.00 40.75 3.73
2012 2349 1.142748 GGTGAGGCCTCAGTGATCG 59.857 63.158 35.92 0.00 40.75 3.69
2013 2350 0.177604 CTGGTGAGGCCTCAGTGATC 59.822 60.000 35.92 22.50 40.75 2.92
2014 2351 1.908340 GCTGGTGAGGCCTCAGTGAT 61.908 60.000 35.92 0.00 40.75 3.06
2016 2353 2.046507 GCTGGTGAGGCCTCAGTG 60.047 66.667 35.92 26.25 40.75 3.66
2022 2374 1.153208 CTCATCAGCTGGTGAGGCC 60.153 63.158 38.71 0.00 39.07 5.19
2023 2375 1.818785 GCTCATCAGCTGGTGAGGC 60.819 63.158 43.03 33.87 43.09 4.70
2041 2393 0.035725 TCCTCAACATCAGCAGCAGG 60.036 55.000 0.00 0.00 0.00 4.85
2043 2395 2.275134 TTTCCTCAACATCAGCAGCA 57.725 45.000 0.00 0.00 0.00 4.41
2106 2458 2.144952 TTCCTCTGCAGCAGGAACA 58.855 52.632 28.93 17.25 43.84 3.18
2132 2484 0.321671 TTCAGTTTCCTCAGGAGCCG 59.678 55.000 0.00 0.00 31.21 5.52
2240 2593 2.766263 TGGAGCCGTCTCAATCTGTATT 59.234 45.455 0.00 0.00 41.13 1.89
2255 2608 1.168714 AACGAAAATCTGCTGGAGCC 58.831 50.000 0.00 0.00 41.18 4.70
2309 2662 5.546621 ACCTATGGTATTCAACATAGCGT 57.453 39.130 4.49 2.38 43.18 5.07
2368 2721 4.398988 GTCCATGATCCAAATGCACTAACA 59.601 41.667 0.00 0.00 0.00 2.41
2369 2722 4.398988 TGTCCATGATCCAAATGCACTAAC 59.601 41.667 0.00 0.00 0.00 2.34
2501 2854 7.719633 AGAGAAAGTAAGGCATGAAACAAAGTA 59.280 33.333 0.00 0.00 0.00 2.24
2526 2879 1.445754 CTGTCGAGCAGCAGTGGAG 60.446 63.158 0.00 0.00 38.52 3.86
2603 2956 5.253330 TCAAGGTAAGCAGGGAAACATAAG 58.747 41.667 0.00 0.00 0.00 1.73
2632 2986 5.047847 TCGGATAATTACAACACTGCTAGC 58.952 41.667 8.10 8.10 0.00 3.42
2654 3008 5.878406 TTCAGGATCTAATGGAAGTCCTC 57.122 43.478 0.00 0.00 37.20 3.71
2787 3141 4.452455 ACACTGCTACATTAACAGCAACTC 59.548 41.667 8.94 0.00 46.55 3.01
2807 3161 0.038892 TGCGGACTCGGTAAAGACAC 60.039 55.000 0.00 0.00 36.79 3.67
2808 3162 0.038892 GTGCGGACTCGGTAAAGACA 60.039 55.000 0.00 0.00 36.79 3.41
2823 3177 2.738521 CCAGGTTCAGGACGTGCG 60.739 66.667 0.00 0.00 41.61 5.34
2918 3272 0.168128 GTGCCACGGACATAGTTTGC 59.832 55.000 0.00 0.00 0.00 3.68
2923 3277 1.808411 ACTTTGTGCCACGGACATAG 58.192 50.000 3.01 3.01 0.00 2.23
3102 3459 0.039256 TCTGGAAAAAGTGCATGCGC 60.039 50.000 23.64 23.64 39.24 6.09
3228 3602 4.937620 TCCAAATCTCATGCAGACTACAAC 59.062 41.667 0.00 0.00 32.26 3.32
3335 3709 9.573166 CTACCCACAAAGATAATTTCATATGGA 57.427 33.333 2.13 0.00 0.00 3.41
3419 3793 3.134574 AGCCATCAAGACCACGTAAAA 57.865 42.857 0.00 0.00 0.00 1.52
3446 3820 1.651240 CTCAAATGCCACCAGCTCGG 61.651 60.000 1.16 1.16 44.23 4.63
3464 3838 3.565764 TGTGAATAGCCTATGCAAGCT 57.434 42.857 13.04 13.04 43.20 3.74
3601 3975 6.487331 TCCAACGTTCAACCTGTATAAAACAT 59.513 34.615 0.00 0.00 37.50 2.71
3610 3984 1.011333 CGTTCCAACGTTCAACCTGT 58.989 50.000 0.00 0.00 46.63 4.00
3646 4020 1.611261 CAGGGGTCCAGGGAACGTA 60.611 63.158 0.00 0.00 31.42 3.57
3649 4023 0.618981 CTTACAGGGGTCCAGGGAAC 59.381 60.000 0.00 0.00 0.00 3.62
3696 4070 2.517919 GGAGGTGGGGATGATGGC 59.482 66.667 0.00 0.00 0.00 4.40
3917 4296 0.249238 TGTGCAACCAAAATGACCGC 60.249 50.000 0.00 0.00 34.36 5.68
3946 4325 7.101652 TGCTAATTTTATTCCATGCGGTTTA 57.898 32.000 0.00 0.00 0.00 2.01
3986 4365 0.526211 GGGTTTCAGAAACATCGGCC 59.474 55.000 24.37 13.71 43.15 6.13
4062 4441 6.656270 TGCCTCCTTTATGCAGATTATATGTG 59.344 38.462 0.00 0.00 0.00 3.21
4063 4442 6.782986 TGCCTCCTTTATGCAGATTATATGT 58.217 36.000 0.00 0.00 0.00 2.29
4120 4499 8.068892 AGTAACCACACCAAATTTCAAGTAAA 57.931 30.769 0.00 0.00 0.00 2.01
4121 4500 7.648039 AGTAACCACACCAAATTTCAAGTAA 57.352 32.000 0.00 0.00 0.00 2.24
4146 4525 7.129457 TCCAGCACAAGAAAGACTGATATAT 57.871 36.000 0.00 0.00 0.00 0.86
4148 4527 5.426689 TCCAGCACAAGAAAGACTGATAT 57.573 39.130 0.00 0.00 0.00 1.63
4149 4528 4.890158 TCCAGCACAAGAAAGACTGATA 57.110 40.909 0.00 0.00 0.00 2.15
4193 4789 0.802494 AATAGGCCAGCGTCGTTTTG 59.198 50.000 5.01 0.00 0.00 2.44
4199 4795 0.744414 TGCTTCAATAGGCCAGCGTC 60.744 55.000 5.01 0.00 34.82 5.19
4271 4914 4.253685 ACAGAAGTATTGGACACCATTCG 58.746 43.478 0.00 0.00 31.53 3.34
4338 4984 2.598589 CAAATTGTCATTGGCAGACCG 58.401 47.619 4.64 0.00 39.70 4.79
4369 5015 8.044060 TGACTAACATTGGCTAGAAAAATGAG 57.956 34.615 15.37 8.50 35.67 2.90
4398 5044 4.019501 TGGTCAGGCTTTTATTTACCCGTA 60.020 41.667 0.00 0.00 0.00 4.02
4400 5046 3.349022 TGGTCAGGCTTTTATTTACCCG 58.651 45.455 0.00 0.00 0.00 5.28
4442 5088 6.289064 CCCAAGTTAGCCCTACTAAATACTG 58.711 44.000 0.00 0.00 42.50 2.74
4443 5089 5.163227 GCCCAAGTTAGCCCTACTAAATACT 60.163 44.000 0.00 0.00 42.50 2.12
4444 5090 5.061853 GCCCAAGTTAGCCCTACTAAATAC 58.938 45.833 0.00 0.00 42.50 1.89
4445 5091 4.973211 AGCCCAAGTTAGCCCTACTAAATA 59.027 41.667 0.00 0.00 42.50 1.40
4446 5092 3.786450 AGCCCAAGTTAGCCCTACTAAAT 59.214 43.478 0.00 0.00 42.50 1.40
4448 5094 2.770232 GAGCCCAAGTTAGCCCTACTAA 59.230 50.000 0.00 0.00 38.57 2.24
4449 5095 2.292653 TGAGCCCAAGTTAGCCCTACTA 60.293 50.000 0.00 0.00 0.00 1.82
4450 5096 1.205055 GAGCCCAAGTTAGCCCTACT 58.795 55.000 0.00 0.00 0.00 2.57
4451 5097 0.909623 TGAGCCCAAGTTAGCCCTAC 59.090 55.000 0.00 0.00 0.00 3.18
4452 5098 1.663911 TTGAGCCCAAGTTAGCCCTA 58.336 50.000 0.00 0.00 0.00 3.53
4453 5099 0.777446 TTTGAGCCCAAGTTAGCCCT 59.223 50.000 0.00 0.00 33.23 5.19
4454 5100 0.888619 GTTTGAGCCCAAGTTAGCCC 59.111 55.000 0.00 0.00 33.23 5.19
4477 5124 0.615331 TCCTCATCTCACAAGGGTGC 59.385 55.000 0.00 0.00 44.87 5.01
4483 5130 3.677148 GCGTTCATCTCCTCATCTCACAA 60.677 47.826 0.00 0.00 0.00 3.33
4489 5136 0.755686 AGGGCGTTCATCTCCTCATC 59.244 55.000 0.00 0.00 0.00 2.92
4495 5142 0.460987 CCACTCAGGGCGTTCATCTC 60.461 60.000 0.00 0.00 0.00 2.75
4529 5176 3.975168 ACGAACTACCATAGCCAAGTT 57.025 42.857 0.00 0.00 34.96 2.66
4580 5430 1.450312 GGCCGGTGATCTTGTGGAG 60.450 63.158 1.90 0.00 0.00 3.86
4581 5431 1.899437 GAGGCCGGTGATCTTGTGGA 61.899 60.000 1.90 0.00 0.00 4.02
4582 5432 1.450312 GAGGCCGGTGATCTTGTGG 60.450 63.158 1.90 0.00 0.00 4.17
4583 5433 1.450312 GGAGGCCGGTGATCTTGTG 60.450 63.158 1.90 0.00 0.00 3.33
4584 5434 1.201429 AAGGAGGCCGGTGATCTTGT 61.201 55.000 1.90 0.00 0.00 3.16
4585 5435 0.745845 CAAGGAGGCCGGTGATCTTG 60.746 60.000 1.90 9.14 0.00 3.02
4586 5436 0.909610 TCAAGGAGGCCGGTGATCTT 60.910 55.000 1.90 0.00 0.00 2.40
4587 5437 0.692419 ATCAAGGAGGCCGGTGATCT 60.692 55.000 1.90 0.00 30.92 2.75
4588 5438 0.533755 CATCAAGGAGGCCGGTGATC 60.534 60.000 1.90 0.00 33.18 2.92
4589 5439 1.528824 CATCAAGGAGGCCGGTGAT 59.471 57.895 1.90 0.00 34.88 3.06
4590 5440 2.989639 CATCAAGGAGGCCGGTGA 59.010 61.111 1.90 0.00 0.00 4.02
4591 5441 2.825836 GCATCAAGGAGGCCGGTG 60.826 66.667 1.90 0.00 32.93 4.94
4592 5442 2.606587 AAGCATCAAGGAGGCCGGT 61.607 57.895 1.90 0.00 40.43 5.28
4593 5443 2.117156 CAAGCATCAAGGAGGCCGG 61.117 63.158 0.00 0.00 40.43 6.13
4594 5444 0.962356 AACAAGCATCAAGGAGGCCG 60.962 55.000 0.00 0.00 40.43 6.13
4595 5445 1.067354 CAAACAAGCATCAAGGAGGCC 60.067 52.381 0.00 0.00 40.43 5.19
4596 5446 1.670967 GCAAACAAGCATCAAGGAGGC 60.671 52.381 0.00 0.00 39.81 4.70
4597 5447 1.401931 CGCAAACAAGCATCAAGGAGG 60.402 52.381 0.00 0.00 0.00 4.30
4598 5448 1.267806 ACGCAAACAAGCATCAAGGAG 59.732 47.619 0.00 0.00 0.00 3.69
4599 5449 1.266718 GACGCAAACAAGCATCAAGGA 59.733 47.619 0.00 0.00 0.00 3.36
4600 5450 1.267806 AGACGCAAACAAGCATCAAGG 59.732 47.619 0.00 0.00 0.00 3.61
4601 5451 2.578495 GAGACGCAAACAAGCATCAAG 58.422 47.619 0.00 0.00 0.00 3.02
4602 5452 1.266718 GGAGACGCAAACAAGCATCAA 59.733 47.619 0.00 0.00 0.00 2.57
4603 5453 0.874390 GGAGACGCAAACAAGCATCA 59.126 50.000 0.00 0.00 0.00 3.07
4604 5454 0.874390 TGGAGACGCAAACAAGCATC 59.126 50.000 0.00 0.00 0.00 3.91
4605 5455 0.593128 GTGGAGACGCAAACAAGCAT 59.407 50.000 0.00 0.00 41.67 3.79
4606 5456 2.021722 GTGGAGACGCAAACAAGCA 58.978 52.632 0.00 0.00 41.67 3.91
4607 5457 4.922791 GTGGAGACGCAAACAAGC 57.077 55.556 0.00 0.00 41.67 4.01
4615 5465 1.078759 CGGTGATCTTGTGGAGACGC 61.079 60.000 0.00 0.00 37.17 5.19
4616 5466 0.526211 TCGGTGATCTTGTGGAGACG 59.474 55.000 0.00 0.00 37.17 4.18
4617 5467 1.404315 GGTCGGTGATCTTGTGGAGAC 60.404 57.143 0.00 0.00 37.17 3.36
4618 5468 0.895530 GGTCGGTGATCTTGTGGAGA 59.104 55.000 0.00 0.00 39.13 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.