Multiple sequence alignment - TraesCS2A01G161500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G161500 chr2A 100.000 2993 0 0 1 2993 113831463 113828471 0.000000e+00 5528.0
1 TraesCS2A01G161500 chr2A 90.984 122 9 2 2874 2993 410621014 410621135 2.390000e-36 163.0
2 TraesCS2A01G161500 chr2A 81.098 164 25 5 418 576 30175489 30175327 3.130000e-25 126.0
3 TraesCS2A01G161500 chr2D 91.438 2511 135 42 408 2872 112551324 112548848 0.000000e+00 3373.0
4 TraesCS2A01G161500 chr2D 88.000 125 14 1 290 413 622831327 622831203 2.400000e-31 147.0
5 TraesCS2A01G161500 chr2B 91.621 2196 98 36 721 2872 162874014 162871861 0.000000e+00 2957.0
6 TraesCS2A01G161500 chr2B 80.000 165 25 7 418 576 11579120 11578958 6.780000e-22 115.0
7 TraesCS2A01G161500 chr2B 82.400 125 19 3 418 540 511124109 511123986 4.080000e-19 106.0
8 TraesCS2A01G161500 chr1D 84.211 190 25 5 1461 1648 475864104 475864290 2.370000e-41 180.0
9 TraesCS2A01G161500 chr1D 90.598 117 9 2 2878 2993 463501957 463502072 1.440000e-33 154.0
10 TraesCS2A01G161500 chr1D 90.517 116 10 1 292 406 469018805 469018690 5.170000e-33 152.0
11 TraesCS2A01G161500 chr1D 79.235 183 31 4 408 584 15517922 15517741 1.460000e-23 121.0
12 TraesCS2A01G161500 chr1D 97.297 37 1 0 551 587 340302294 340302258 2.490000e-06 63.9
13 TraesCS2A01G161500 chr1D 93.023 43 3 0 14 56 395992552 395992510 2.490000e-06 63.9
14 TraesCS2A01G161500 chr4D 80.309 259 30 14 2626 2871 44758598 44758848 3.070000e-40 176.0
15 TraesCS2A01G161500 chr4D 91.870 123 5 5 2874 2993 374626303 374626183 1.850000e-37 167.0
16 TraesCS2A01G161500 chr4B 79.921 254 32 14 2626 2871 64786060 64786302 5.130000e-38 169.0
17 TraesCS2A01G161500 chr6A 90.756 119 9 2 2877 2993 270742765 270742883 1.110000e-34 158.0
18 TraesCS2A01G161500 chr6B 89.831 118 11 1 290 406 520548054 520548171 1.860000e-32 150.0
19 TraesCS2A01G161500 chr6D 89.744 117 11 1 292 407 287026013 287025897 6.680000e-32 148.0
20 TraesCS2A01G161500 chr1A 89.744 117 11 1 2878 2993 399247645 399247761 6.680000e-32 148.0
21 TraesCS2A01G161500 chr1A 89.655 116 11 1 292 406 550443110 550442995 2.400000e-31 147.0
22 TraesCS2A01G161500 chr1A 97.297 37 1 0 14 50 489280789 489280825 2.490000e-06 63.9
23 TraesCS2A01G161500 chr7B 89.655 116 11 1 292 406 245073354 245073469 2.400000e-31 147.0
24 TraesCS2A01G161500 chr7B 82.114 123 19 3 418 538 680865205 680865084 5.280000e-18 102.0
25 TraesCS2A01G161500 chr7B 80.000 125 22 3 418 540 680872492 680872369 4.110000e-14 89.8
26 TraesCS2A01G161500 chr7A 86.822 129 16 1 290 417 613709476 613709348 3.110000e-30 143.0
27 TraesCS2A01G161500 chr7A 92.857 98 6 1 2883 2979 32533654 32533751 1.120000e-29 141.0
28 TraesCS2A01G161500 chr5B 87.302 126 15 1 290 414 386151869 386151744 3.110000e-30 143.0
29 TraesCS2A01G161500 chr5B 84.466 103 11 4 1424 1522 334683195 334683296 2.460000e-16 97.1
30 TraesCS2A01G161500 chr5B 90.625 64 6 0 1459 1522 334593990 334594053 5.320000e-13 86.1
31 TraesCS2A01G161500 chr3B 93.000 100 3 3 2871 2967 115400460 115400558 3.110000e-30 143.0
32 TraesCS2A01G161500 chr3B 93.023 43 3 0 2550 2592 740864833 740864791 2.490000e-06 63.9
33 TraesCS2A01G161500 chr3A 87.805 123 14 1 291 412 600026647 600026525 3.110000e-30 143.0
34 TraesCS2A01G161500 chr3A 87.603 121 12 3 2875 2993 486224201 486224320 1.450000e-28 137.0
35 TraesCS2A01G161500 chr5A 78.205 234 41 5 408 637 94748225 94747998 1.120000e-29 141.0
36 TraesCS2A01G161500 chr5A 81.481 108 17 3 1418 1522 385955825 385955932 5.320000e-13 86.1
37 TraesCS2A01G161500 chr4A 94.505 91 4 1 2878 2967 682060424 682060334 4.020000e-29 139.0
38 TraesCS2A01G161500 chr4A 76.571 175 34 5 418 587 595647695 595647867 4.110000e-14 89.8
39 TraesCS2A01G161500 chr4A 100.000 28 0 0 236 263 640095085 640095112 5.000000e-03 52.8
40 TraesCS2A01G161500 chr5D 87.342 79 10 0 462 540 313773329 313773251 1.140000e-14 91.6
41 TraesCS2A01G161500 chr5D 82.192 73 11 2 415 486 329772096 329772167 8.960000e-06 62.1
42 TraesCS2A01G161500 chr3D 77.922 154 15 11 2687 2833 324322660 324322801 8.900000e-11 78.7
43 TraesCS2A01G161500 chr3D 89.091 55 4 1 551 605 363097632 363097580 1.930000e-07 67.6
44 TraesCS2A01G161500 chrUn 93.023 43 3 0 14 56 347975641 347975599 2.490000e-06 63.9
45 TraesCS2A01G161500 chrUn 100.000 28 0 0 233 260 270381180 270381207 5.000000e-03 52.8
46 TraesCS2A01G161500 chr1B 97.297 37 1 0 14 50 526198186 526198222 2.490000e-06 63.9
47 TraesCS2A01G161500 chr1B 97.297 37 1 0 14 50 526215153 526215189 2.490000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G161500 chr2A 113828471 113831463 2992 True 5528 5528 100.000 1 2993 1 chr2A.!!$R2 2992
1 TraesCS2A01G161500 chr2D 112548848 112551324 2476 True 3373 3373 91.438 408 2872 1 chr2D.!!$R1 2464
2 TraesCS2A01G161500 chr2B 162871861 162874014 2153 True 2957 2957 91.621 721 2872 1 chr2B.!!$R2 2151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 483 0.033504 TTCAGTGGGAGCAGACGTTC 59.966 55.0 0.0 0.0 0.0 3.95 F
852 864 0.535102 ACTTGACTTGAACCCTGCCG 60.535 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1855 0.108329 GGTACGGTGACATGGTCAGG 60.108 60.0 0.0 0.0 43.57 3.86 R
2780 2841 1.464734 TTTGTGGAAGTCGTGGCAAA 58.535 45.0 0.0 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.545105 TTTGATCAATATTTGCAAAGTTTGACT 57.455 25.926 28.06 20.73 30.52 3.41
68 69 9.545105 TTGATCAATATTTGCAAAGTTTGACTT 57.455 25.926 28.06 19.39 40.80 3.01
106 107 9.147732 TCTATATCTATGGGCACTACAATATGG 57.852 37.037 0.00 0.00 0.00 2.74
107 108 7.995052 ATATCTATGGGCACTACAATATGGA 57.005 36.000 0.00 0.00 0.00 3.41
108 109 6.702449 ATCTATGGGCACTACAATATGGAA 57.298 37.500 0.00 0.00 0.00 3.53
109 110 6.508030 TCTATGGGCACTACAATATGGAAA 57.492 37.500 0.00 0.00 0.00 3.13
110 111 6.533730 TCTATGGGCACTACAATATGGAAAG 58.466 40.000 0.00 0.00 0.00 2.62
111 112 4.853468 TGGGCACTACAATATGGAAAGA 57.147 40.909 0.00 0.00 0.00 2.52
112 113 5.186256 TGGGCACTACAATATGGAAAGAA 57.814 39.130 0.00 0.00 0.00 2.52
113 114 5.575157 TGGGCACTACAATATGGAAAGAAA 58.425 37.500 0.00 0.00 0.00 2.52
114 115 5.652014 TGGGCACTACAATATGGAAAGAAAG 59.348 40.000 0.00 0.00 0.00 2.62
115 116 5.067805 GGGCACTACAATATGGAAAGAAAGG 59.932 44.000 0.00 0.00 0.00 3.11
116 117 5.885912 GGCACTACAATATGGAAAGAAAGGA 59.114 40.000 0.00 0.00 0.00 3.36
117 118 6.038714 GGCACTACAATATGGAAAGAAAGGAG 59.961 42.308 0.00 0.00 0.00 3.69
118 119 6.599638 GCACTACAATATGGAAAGAAAGGAGT 59.400 38.462 0.00 0.00 0.00 3.85
119 120 7.769044 GCACTACAATATGGAAAGAAAGGAGTA 59.231 37.037 0.00 0.00 0.00 2.59
120 121 9.099454 CACTACAATATGGAAAGAAAGGAGTAC 57.901 37.037 0.00 0.00 0.00 2.73
121 122 7.980099 ACTACAATATGGAAAGAAAGGAGTACG 59.020 37.037 0.00 0.00 0.00 3.67
122 123 6.942976 ACAATATGGAAAGAAAGGAGTACGA 58.057 36.000 0.00 0.00 0.00 3.43
123 124 7.042335 ACAATATGGAAAGAAAGGAGTACGAG 58.958 38.462 0.00 0.00 0.00 4.18
124 125 3.955650 TGGAAAGAAAGGAGTACGAGG 57.044 47.619 0.00 0.00 0.00 4.63
125 126 3.503365 TGGAAAGAAAGGAGTACGAGGA 58.497 45.455 0.00 0.00 0.00 3.71
126 127 3.257624 TGGAAAGAAAGGAGTACGAGGAC 59.742 47.826 0.00 0.00 0.00 3.85
127 128 3.257624 GGAAAGAAAGGAGTACGAGGACA 59.742 47.826 0.00 0.00 0.00 4.02
128 129 3.938289 AAGAAAGGAGTACGAGGACAC 57.062 47.619 0.00 0.00 0.00 3.67
129 130 2.872732 AGAAAGGAGTACGAGGACACA 58.127 47.619 0.00 0.00 0.00 3.72
130 131 3.228453 AGAAAGGAGTACGAGGACACAA 58.772 45.455 0.00 0.00 0.00 3.33
131 132 3.005578 AGAAAGGAGTACGAGGACACAAC 59.994 47.826 0.00 0.00 0.00 3.32
132 133 1.991121 AGGAGTACGAGGACACAACA 58.009 50.000 0.00 0.00 0.00 3.33
133 134 2.526432 AGGAGTACGAGGACACAACAT 58.474 47.619 0.00 0.00 0.00 2.71
134 135 3.693807 AGGAGTACGAGGACACAACATA 58.306 45.455 0.00 0.00 0.00 2.29
135 136 3.695060 AGGAGTACGAGGACACAACATAG 59.305 47.826 0.00 0.00 0.00 2.23
136 137 3.442977 GGAGTACGAGGACACAACATAGT 59.557 47.826 0.00 0.00 0.00 2.12
137 138 4.082354 GGAGTACGAGGACACAACATAGTT 60.082 45.833 0.00 0.00 0.00 2.24
138 139 4.806330 AGTACGAGGACACAACATAGTTG 58.194 43.478 8.24 8.24 0.00 3.16
139 140 2.413837 ACGAGGACACAACATAGTTGC 58.586 47.619 9.60 0.00 0.00 4.17
140 141 1.732259 CGAGGACACAACATAGTTGCC 59.268 52.381 9.60 3.82 0.00 4.52
141 142 2.778299 GAGGACACAACATAGTTGCCA 58.222 47.619 9.60 0.00 0.00 4.92
142 143 2.744202 GAGGACACAACATAGTTGCCAG 59.256 50.000 9.60 3.53 0.00 4.85
143 144 1.200020 GGACACAACATAGTTGCCAGC 59.800 52.381 9.60 0.00 0.00 4.85
144 145 2.154462 GACACAACATAGTTGCCAGCT 58.846 47.619 9.60 0.00 0.00 4.24
145 146 2.554032 GACACAACATAGTTGCCAGCTT 59.446 45.455 9.60 0.00 0.00 3.74
146 147 2.294233 ACACAACATAGTTGCCAGCTTG 59.706 45.455 9.60 2.79 0.00 4.01
147 148 2.294233 CACAACATAGTTGCCAGCTTGT 59.706 45.455 9.60 0.00 0.00 3.16
148 149 2.294233 ACAACATAGTTGCCAGCTTGTG 59.706 45.455 9.60 0.00 0.00 3.33
149 150 2.276732 ACATAGTTGCCAGCTTGTGT 57.723 45.000 0.00 0.00 0.00 3.72
150 151 2.586425 ACATAGTTGCCAGCTTGTGTT 58.414 42.857 0.00 0.00 0.00 3.32
151 152 2.958355 ACATAGTTGCCAGCTTGTGTTT 59.042 40.909 0.00 0.00 0.00 2.83
152 153 4.141287 ACATAGTTGCCAGCTTGTGTTTA 58.859 39.130 0.00 0.00 0.00 2.01
153 154 4.023193 ACATAGTTGCCAGCTTGTGTTTAC 60.023 41.667 0.00 0.00 0.00 2.01
154 155 2.374184 AGTTGCCAGCTTGTGTTTACA 58.626 42.857 0.00 0.00 34.31 2.41
155 156 2.958355 AGTTGCCAGCTTGTGTTTACAT 59.042 40.909 0.00 0.00 36.53 2.29
156 157 4.141287 AGTTGCCAGCTTGTGTTTACATA 58.859 39.130 0.00 0.00 36.53 2.29
157 158 4.582656 AGTTGCCAGCTTGTGTTTACATAA 59.417 37.500 0.00 0.00 36.53 1.90
158 159 4.764679 TGCCAGCTTGTGTTTACATAAG 57.235 40.909 13.14 13.14 44.60 1.73
166 167 3.465122 GTGTTTACATAAGCACACCCG 57.535 47.619 12.20 0.00 43.85 5.28
167 168 2.160813 GTGTTTACATAAGCACACCCGG 59.839 50.000 12.20 0.00 43.85 5.73
168 169 2.224572 TGTTTACATAAGCACACCCGGT 60.225 45.455 0.00 0.00 0.00 5.28
169 170 2.389962 TTACATAAGCACACCCGGTC 57.610 50.000 0.00 0.00 0.00 4.79
170 171 1.563924 TACATAAGCACACCCGGTCT 58.436 50.000 0.00 0.00 0.00 3.85
171 172 0.690762 ACATAAGCACACCCGGTCTT 59.309 50.000 0.00 0.00 0.00 3.01
172 173 1.073284 ACATAAGCACACCCGGTCTTT 59.927 47.619 0.00 0.00 0.00 2.52
173 174 2.159382 CATAAGCACACCCGGTCTTTT 58.841 47.619 0.00 0.00 0.00 2.27
174 175 2.351706 TAAGCACACCCGGTCTTTTT 57.648 45.000 0.00 0.00 0.00 1.94
175 176 2.351706 AAGCACACCCGGTCTTTTTA 57.648 45.000 0.00 0.00 0.00 1.52
176 177 1.601166 AGCACACCCGGTCTTTTTAC 58.399 50.000 0.00 0.00 0.00 2.01
177 178 1.134037 AGCACACCCGGTCTTTTTACA 60.134 47.619 0.00 0.00 0.00 2.41
178 179 1.883926 GCACACCCGGTCTTTTTACAT 59.116 47.619 0.00 0.00 0.00 2.29
179 180 3.075884 GCACACCCGGTCTTTTTACATA 58.924 45.455 0.00 0.00 0.00 2.29
180 181 3.502979 GCACACCCGGTCTTTTTACATAA 59.497 43.478 0.00 0.00 0.00 1.90
181 182 4.379082 GCACACCCGGTCTTTTTACATAAG 60.379 45.833 0.00 0.00 0.00 1.73
182 183 4.758165 CACACCCGGTCTTTTTACATAAGT 59.242 41.667 0.00 0.00 0.00 2.24
183 184 5.933463 CACACCCGGTCTTTTTACATAAGTA 59.067 40.000 0.00 0.00 0.00 2.24
184 185 5.934043 ACACCCGGTCTTTTTACATAAGTAC 59.066 40.000 0.00 0.00 0.00 2.73
185 186 5.933463 CACCCGGTCTTTTTACATAAGTACA 59.067 40.000 0.00 0.00 0.00 2.90
186 187 6.427547 CACCCGGTCTTTTTACATAAGTACAA 59.572 38.462 0.00 0.00 0.00 2.41
187 188 6.427853 ACCCGGTCTTTTTACATAAGTACAAC 59.572 38.462 0.00 0.00 0.00 3.32
188 189 6.427547 CCCGGTCTTTTTACATAAGTACAACA 59.572 38.462 0.00 0.00 0.00 3.33
189 190 7.120138 CCCGGTCTTTTTACATAAGTACAACAT 59.880 37.037 0.00 0.00 0.00 2.71
190 191 7.960738 CCGGTCTTTTTACATAAGTACAACATG 59.039 37.037 0.00 0.00 0.00 3.21
191 192 7.960738 CGGTCTTTTTACATAAGTACAACATGG 59.039 37.037 0.00 0.00 0.00 3.66
192 193 8.241367 GGTCTTTTTACATAAGTACAACATGGG 58.759 37.037 0.00 0.00 0.00 4.00
193 194 9.005777 GTCTTTTTACATAAGTACAACATGGGA 57.994 33.333 0.00 0.00 0.00 4.37
194 195 9.575868 TCTTTTTACATAAGTACAACATGGGAA 57.424 29.630 0.00 0.00 0.00 3.97
195 196 9.840427 CTTTTTACATAAGTACAACATGGGAAG 57.160 33.333 0.00 0.00 0.00 3.46
196 197 7.931578 TTTACATAAGTACAACATGGGAAGG 57.068 36.000 0.00 0.00 0.00 3.46
197 198 5.514500 ACATAAGTACAACATGGGAAGGT 57.486 39.130 0.00 0.00 0.00 3.50
198 199 5.887754 ACATAAGTACAACATGGGAAGGTT 58.112 37.500 0.00 0.00 0.00 3.50
199 200 5.944007 ACATAAGTACAACATGGGAAGGTTC 59.056 40.000 0.00 0.00 0.00 3.62
200 201 4.447138 AAGTACAACATGGGAAGGTTCA 57.553 40.909 0.00 0.00 0.00 3.18
201 202 3.751518 AGTACAACATGGGAAGGTTCAC 58.248 45.455 0.00 0.00 0.00 3.18
202 203 3.394606 AGTACAACATGGGAAGGTTCACT 59.605 43.478 0.00 0.00 0.00 3.41
203 204 2.863809 ACAACATGGGAAGGTTCACTC 58.136 47.619 0.00 0.00 0.00 3.51
204 205 1.806542 CAACATGGGAAGGTTCACTCG 59.193 52.381 0.00 0.00 0.00 4.18
205 206 0.324943 ACATGGGAAGGTTCACTCGG 59.675 55.000 0.00 0.00 0.00 4.63
206 207 0.324943 CATGGGAAGGTTCACTCGGT 59.675 55.000 0.00 0.00 0.00 4.69
207 208 1.553248 CATGGGAAGGTTCACTCGGTA 59.447 52.381 0.00 0.00 0.00 4.02
208 209 1.946984 TGGGAAGGTTCACTCGGTAT 58.053 50.000 0.00 0.00 0.00 2.73
209 210 2.262637 TGGGAAGGTTCACTCGGTATT 58.737 47.619 0.00 0.00 0.00 1.89
210 211 3.443052 TGGGAAGGTTCACTCGGTATTA 58.557 45.455 0.00 0.00 0.00 0.98
211 212 3.839490 TGGGAAGGTTCACTCGGTATTAA 59.161 43.478 0.00 0.00 0.00 1.40
212 213 4.186926 GGGAAGGTTCACTCGGTATTAAC 58.813 47.826 0.00 0.00 0.00 2.01
213 214 4.186926 GGAAGGTTCACTCGGTATTAACC 58.813 47.826 0.00 0.00 42.95 2.85
214 215 3.900966 AGGTTCACTCGGTATTAACCC 57.099 47.619 0.00 0.00 43.54 4.11
215 216 3.447950 AGGTTCACTCGGTATTAACCCT 58.552 45.455 0.00 0.00 43.54 4.34
216 217 3.842436 AGGTTCACTCGGTATTAACCCTT 59.158 43.478 0.00 0.00 43.54 3.95
217 218 5.025453 AGGTTCACTCGGTATTAACCCTTA 58.975 41.667 0.00 0.00 43.54 2.69
218 219 5.484998 AGGTTCACTCGGTATTAACCCTTAA 59.515 40.000 0.00 0.00 43.54 1.85
219 220 6.157471 AGGTTCACTCGGTATTAACCCTTAAT 59.843 38.462 0.00 0.00 43.54 1.40
220 221 6.825213 GGTTCACTCGGTATTAACCCTTAATT 59.175 38.462 0.00 0.00 43.54 1.40
221 222 7.337689 GGTTCACTCGGTATTAACCCTTAATTT 59.662 37.037 0.00 0.00 43.54 1.82
222 223 8.733458 GTTCACTCGGTATTAACCCTTAATTTT 58.267 33.333 0.00 0.00 43.54 1.82
223 224 8.866970 TCACTCGGTATTAACCCTTAATTTTT 57.133 30.769 0.00 0.00 43.54 1.94
224 225 8.732531 TCACTCGGTATTAACCCTTAATTTTTG 58.267 33.333 0.00 0.00 43.54 2.44
225 226 8.517056 CACTCGGTATTAACCCTTAATTTTTGT 58.483 33.333 0.00 0.00 43.54 2.83
226 227 9.737844 ACTCGGTATTAACCCTTAATTTTTGTA 57.262 29.630 0.00 0.00 43.54 2.41
245 246 8.925161 TTTTGTAAAAGAAGTGAATCAACCTG 57.075 30.769 0.00 0.00 0.00 4.00
246 247 7.639113 TTGTAAAAGAAGTGAATCAACCTGT 57.361 32.000 0.00 0.00 0.00 4.00
247 248 7.026631 TGTAAAAGAAGTGAATCAACCTGTG 57.973 36.000 0.00 0.00 0.00 3.66
248 249 5.520376 AAAAGAAGTGAATCAACCTGTGG 57.480 39.130 0.00 0.00 0.00 4.17
249 250 3.864789 AGAAGTGAATCAACCTGTGGT 57.135 42.857 0.00 0.00 37.65 4.16
260 261 3.825908 AACCTGTGGTTGGATGGTTAT 57.174 42.857 0.71 0.00 45.07 1.89
261 262 3.085952 ACCTGTGGTTGGATGGTTATG 57.914 47.619 0.00 0.00 27.29 1.90
262 263 2.647299 ACCTGTGGTTGGATGGTTATGA 59.353 45.455 0.00 0.00 27.29 2.15
263 264 3.269381 ACCTGTGGTTGGATGGTTATGAT 59.731 43.478 0.00 0.00 27.29 2.45
264 265 4.476846 ACCTGTGGTTGGATGGTTATGATA 59.523 41.667 0.00 0.00 27.29 2.15
265 266 5.134339 ACCTGTGGTTGGATGGTTATGATAT 59.866 40.000 0.00 0.00 27.29 1.63
266 267 5.707298 CCTGTGGTTGGATGGTTATGATATC 59.293 44.000 0.00 0.00 0.00 1.63
267 268 5.630121 TGTGGTTGGATGGTTATGATATCC 58.370 41.667 0.00 0.00 40.59 2.59
268 269 5.010282 GTGGTTGGATGGTTATGATATCCC 58.990 45.833 0.00 0.00 39.68 3.85
269 270 4.261801 GGTTGGATGGTTATGATATCCCG 58.738 47.826 0.00 0.00 39.68 5.14
270 271 4.261801 GTTGGATGGTTATGATATCCCGG 58.738 47.826 0.00 0.00 39.68 5.73
271 272 3.526899 TGGATGGTTATGATATCCCGGT 58.473 45.455 0.00 0.00 39.68 5.28
272 273 3.517901 TGGATGGTTATGATATCCCGGTC 59.482 47.826 0.00 0.00 39.68 4.79
273 274 3.118371 GGATGGTTATGATATCCCGGTCC 60.118 52.174 0.00 2.90 35.43 4.46
274 275 2.979177 TGGTTATGATATCCCGGTCCA 58.021 47.619 0.00 0.49 0.00 4.02
275 276 2.635915 TGGTTATGATATCCCGGTCCAC 59.364 50.000 0.00 0.00 0.00 4.02
276 277 2.027469 GGTTATGATATCCCGGTCCACC 60.027 54.545 0.00 0.00 0.00 4.61
277 278 2.635915 GTTATGATATCCCGGTCCACCA 59.364 50.000 0.00 0.00 35.14 4.17
278 279 1.352083 ATGATATCCCGGTCCACCAG 58.648 55.000 0.00 0.00 35.14 4.00
279 280 0.762842 TGATATCCCGGTCCACCAGG 60.763 60.000 0.00 0.00 34.80 4.45
280 281 0.763223 GATATCCCGGTCCACCAGGT 60.763 60.000 0.00 0.00 35.06 4.00
281 282 0.327191 ATATCCCGGTCCACCAGGTT 60.327 55.000 0.00 0.00 35.06 3.50
282 283 0.979187 TATCCCGGTCCACCAGGTTC 60.979 60.000 0.00 0.00 35.06 3.62
283 284 3.246112 CCCGGTCCACCAGGTTCA 61.246 66.667 0.00 0.00 35.89 3.18
284 285 2.824880 CCCGGTCCACCAGGTTCAA 61.825 63.158 0.00 0.00 35.89 2.69
285 286 1.302511 CCGGTCCACCAGGTTCAAG 60.303 63.158 0.00 0.00 35.89 3.02
286 287 1.450211 CGGTCCACCAGGTTCAAGT 59.550 57.895 0.00 0.00 35.89 3.16
287 288 0.602905 CGGTCCACCAGGTTCAAGTC 60.603 60.000 0.00 0.00 35.89 3.01
288 289 0.250770 GGTCCACCAGGTTCAAGTCC 60.251 60.000 0.00 0.00 35.89 3.85
289 290 0.765510 GTCCACCAGGTTCAAGTCCT 59.234 55.000 0.00 0.00 35.89 3.85
290 291 1.975680 GTCCACCAGGTTCAAGTCCTA 59.024 52.381 0.00 0.00 35.89 2.94
291 292 2.572104 GTCCACCAGGTTCAAGTCCTAT 59.428 50.000 0.00 0.00 35.89 2.57
292 293 3.773119 GTCCACCAGGTTCAAGTCCTATA 59.227 47.826 0.00 0.00 35.89 1.31
293 294 3.773119 TCCACCAGGTTCAAGTCCTATAC 59.227 47.826 0.00 0.00 35.89 1.47
294 295 3.775316 CCACCAGGTTCAAGTCCTATACT 59.225 47.826 0.00 0.00 41.49 2.12
295 296 4.141914 CCACCAGGTTCAAGTCCTATACTC 60.142 50.000 0.00 0.00 37.50 2.59
296 297 4.031611 ACCAGGTTCAAGTCCTATACTCC 58.968 47.826 0.00 0.00 37.50 3.85
297 298 3.388350 CCAGGTTCAAGTCCTATACTCCC 59.612 52.174 0.00 0.00 37.50 4.30
298 299 4.290942 CAGGTTCAAGTCCTATACTCCCT 58.709 47.826 0.00 0.00 37.50 4.20
299 300 4.717280 CAGGTTCAAGTCCTATACTCCCTT 59.283 45.833 0.00 0.00 37.50 3.95
300 301 4.963628 AGGTTCAAGTCCTATACTCCCTTC 59.036 45.833 0.00 0.00 37.50 3.46
301 302 4.202131 GGTTCAAGTCCTATACTCCCTTCG 60.202 50.000 0.00 0.00 37.50 3.79
302 303 4.246712 TCAAGTCCTATACTCCCTTCGT 57.753 45.455 0.00 0.00 37.50 3.85
303 304 4.205587 TCAAGTCCTATACTCCCTTCGTC 58.794 47.826 0.00 0.00 37.50 4.20
304 305 2.848691 AGTCCTATACTCCCTTCGTCG 58.151 52.381 0.00 0.00 30.33 5.12
305 306 1.878734 GTCCTATACTCCCTTCGTCGG 59.121 57.143 0.00 0.00 0.00 4.79
306 307 1.770658 TCCTATACTCCCTTCGTCGGA 59.229 52.381 0.00 0.00 0.00 4.55
307 308 2.173356 TCCTATACTCCCTTCGTCGGAA 59.827 50.000 0.00 0.00 0.00 4.30
308 309 2.954318 CCTATACTCCCTTCGTCGGAAA 59.046 50.000 0.00 0.00 0.00 3.13
309 310 3.573110 CCTATACTCCCTTCGTCGGAAAT 59.427 47.826 0.00 0.00 0.00 2.17
310 311 4.763793 CCTATACTCCCTTCGTCGGAAATA 59.236 45.833 0.00 0.00 0.00 1.40
311 312 2.955477 ACTCCCTTCGTCGGAAATAC 57.045 50.000 0.00 0.00 0.00 1.89
312 313 2.454538 ACTCCCTTCGTCGGAAATACT 58.545 47.619 0.00 0.00 0.00 2.12
313 314 2.830321 ACTCCCTTCGTCGGAAATACTT 59.170 45.455 0.00 0.00 0.00 2.24
314 315 3.187700 CTCCCTTCGTCGGAAATACTTG 58.812 50.000 0.00 0.00 0.00 3.16
315 316 2.564062 TCCCTTCGTCGGAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
316 317 2.928116 CCCTTCGTCGGAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
317 318 2.928116 CCTTCGTCGGAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
318 319 3.368116 CCTTCGTCGGAAATACTTGTCCT 60.368 47.826 0.00 0.00 0.00 3.85
319 320 4.142315 CCTTCGTCGGAAATACTTGTCCTA 60.142 45.833 0.00 0.00 0.00 2.94
320 321 5.389859 TTCGTCGGAAATACTTGTCCTAA 57.610 39.130 0.00 0.00 0.00 2.69
321 322 5.389859 TCGTCGGAAATACTTGTCCTAAA 57.610 39.130 0.00 0.00 0.00 1.85
322 323 5.782047 TCGTCGGAAATACTTGTCCTAAAA 58.218 37.500 0.00 0.00 0.00 1.52
323 324 6.222389 TCGTCGGAAATACTTGTCCTAAAAA 58.778 36.000 0.00 0.00 0.00 1.94
324 325 6.875195 TCGTCGGAAATACTTGTCCTAAAAAT 59.125 34.615 0.00 0.00 0.00 1.82
325 326 7.063780 TCGTCGGAAATACTTGTCCTAAAAATC 59.936 37.037 0.00 0.00 0.00 2.17
326 327 7.148540 CGTCGGAAATACTTGTCCTAAAAATCA 60.149 37.037 0.00 0.00 0.00 2.57
327 328 8.508875 GTCGGAAATACTTGTCCTAAAAATCAA 58.491 33.333 0.00 0.00 0.00 2.57
328 329 9.238368 TCGGAAATACTTGTCCTAAAAATCAAT 57.762 29.630 0.00 0.00 0.00 2.57
329 330 9.289303 CGGAAATACTTGTCCTAAAAATCAATG 57.711 33.333 0.00 0.00 0.00 2.82
334 335 9.975218 ATACTTGTCCTAAAAATCAATGTACCT 57.025 29.630 0.00 0.00 0.00 3.08
336 337 9.449719 ACTTGTCCTAAAAATCAATGTACCTAG 57.550 33.333 0.00 0.00 0.00 3.02
337 338 9.667107 CTTGTCCTAAAAATCAATGTACCTAGA 57.333 33.333 0.00 0.00 0.00 2.43
338 339 9.444600 TTGTCCTAAAAATCAATGTACCTAGAC 57.555 33.333 0.00 0.00 0.00 2.59
339 340 8.044908 TGTCCTAAAAATCAATGTACCTAGACC 58.955 37.037 0.00 0.00 0.00 3.85
340 341 8.265764 GTCCTAAAAATCAATGTACCTAGACCT 58.734 37.037 0.00 0.00 0.00 3.85
341 342 9.496710 TCCTAAAAATCAATGTACCTAGACCTA 57.503 33.333 0.00 0.00 0.00 3.08
382 383 9.699410 ACATCCATTTTATCCATTTCTAAGACA 57.301 29.630 0.00 0.00 0.00 3.41
394 395 9.456147 TCCATTTCTAAGACAAATATTTTCGGA 57.544 29.630 0.00 0.00 0.00 4.55
395 396 9.503427 CCATTTCTAAGACAAATATTTTCGGAC 57.497 33.333 0.00 0.00 0.00 4.79
396 397 9.210426 CATTTCTAAGACAAATATTTTCGGACG 57.790 33.333 0.00 0.00 0.00 4.79
397 398 6.897259 TCTAAGACAAATATTTTCGGACGG 57.103 37.500 0.00 0.00 0.00 4.79
398 399 6.632909 TCTAAGACAAATATTTTCGGACGGA 58.367 36.000 0.00 0.00 0.00 4.69
399 400 5.796350 AAGACAAATATTTTCGGACGGAG 57.204 39.130 0.00 0.00 0.00 4.63
400 401 4.189231 AGACAAATATTTTCGGACGGAGG 58.811 43.478 0.00 0.00 0.00 4.30
401 402 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
402 403 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
403 404 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
404 405 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
405 406 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
406 407 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
407 408 1.856629 TTTCGGACGGAGGGAGTATT 58.143 50.000 0.00 0.00 0.00 1.89
408 409 1.856629 TTCGGACGGAGGGAGTATTT 58.143 50.000 0.00 0.00 0.00 1.40
409 410 1.108776 TCGGACGGAGGGAGTATTTG 58.891 55.000 0.00 0.00 0.00 2.32
410 411 1.108776 CGGACGGAGGGAGTATTTGA 58.891 55.000 0.00 0.00 0.00 2.69
411 412 1.687123 CGGACGGAGGGAGTATTTGAT 59.313 52.381 0.00 0.00 0.00 2.57
416 417 5.011738 GGACGGAGGGAGTATTTGATATTGA 59.988 44.000 0.00 0.00 0.00 2.57
421 422 6.944862 GGAGGGAGTATTTGATATTGATGCTT 59.055 38.462 0.00 0.00 0.00 3.91
422 423 7.094463 GGAGGGAGTATTTGATATTGATGCTTG 60.094 40.741 0.00 0.00 0.00 4.01
430 431 8.997621 ATTTGATATTGATGCTTGCATTATCC 57.002 30.769 9.59 0.00 32.05 2.59
434 435 2.589720 TGATGCTTGCATTATCCCTGG 58.410 47.619 9.59 0.00 0.00 4.45
453 454 8.728596 TCCCTGGATTTATTTTAGGTTTTTGA 57.271 30.769 0.00 0.00 0.00 2.69
454 455 8.590204 TCCCTGGATTTATTTTAGGTTTTTGAC 58.410 33.333 0.00 0.00 0.00 3.18
474 475 1.079503 GATGTTCGTTCAGTGGGAGC 58.920 55.000 0.00 0.00 0.00 4.70
481 482 0.249911 GTTCAGTGGGAGCAGACGTT 60.250 55.000 0.00 0.00 0.00 3.99
482 483 0.033504 TTCAGTGGGAGCAGACGTTC 59.966 55.000 0.00 0.00 0.00 3.95
483 484 1.374758 CAGTGGGAGCAGACGTTCC 60.375 63.158 0.00 0.00 41.64 3.62
514 515 0.761187 AAGCTCCTGTGCTGACTTCA 59.239 50.000 0.00 0.00 43.24 3.02
523 524 5.877012 TCCTGTGCTGACTTCATAAAATCTC 59.123 40.000 0.00 0.00 0.00 2.75
526 527 7.308770 CCTGTGCTGACTTCATAAAATCTCAAA 60.309 37.037 0.00 0.00 0.00 2.69
540 541 1.748493 TCTCAAAATGTTATGCCGGCC 59.252 47.619 26.77 9.02 0.00 6.13
541 542 1.750778 CTCAAAATGTTATGCCGGCCT 59.249 47.619 26.77 18.16 0.00 5.19
542 543 1.748493 TCAAAATGTTATGCCGGCCTC 59.252 47.619 26.77 12.01 0.00 4.70
543 544 1.111277 AAAATGTTATGCCGGCCTCC 58.889 50.000 26.77 9.87 0.00 4.30
553 558 4.899239 CGGCCTCCGGAGATGTGC 62.899 72.222 33.39 25.30 44.15 4.57
560 565 2.234143 CTCCGGAGATGTGCTCATAGA 58.766 52.381 28.21 0.00 45.81 1.98
561 566 2.228582 CTCCGGAGATGTGCTCATAGAG 59.771 54.545 28.21 0.00 45.81 2.43
562 567 2.158608 TCCGGAGATGTGCTCATAGAGA 60.159 50.000 0.00 0.00 45.81 3.10
569 574 6.183360 GGAGATGTGCTCATAGAGATAGGATG 60.183 46.154 0.32 0.00 45.81 3.51
570 575 6.255287 AGATGTGCTCATAGAGATAGGATGT 58.745 40.000 0.32 0.00 34.06 3.06
572 577 4.021632 TGTGCTCATAGAGATAGGATGTGC 60.022 45.833 0.00 0.00 33.82 4.57
576 581 3.057245 TCATAGAGATAGGATGTGCGTGC 60.057 47.826 0.00 0.00 0.00 5.34
577 582 1.114627 AGAGATAGGATGTGCGTGCA 58.885 50.000 0.00 0.00 0.00 4.57
579 584 1.797046 GAGATAGGATGTGCGTGCATG 59.203 52.381 0.09 0.09 0.00 4.06
596 605 6.549061 CGTGCATGCATTTATCTATATGCTT 58.451 36.000 25.64 5.22 45.66 3.91
599 608 7.272731 GTGCATGCATTTATCTATATGCTTGTG 59.727 37.037 25.64 13.74 46.37 3.33
683 692 4.646492 AGCCATCCATTTGACCATCTAAAC 59.354 41.667 0.00 0.00 0.00 2.01
784 796 1.938016 GCAAGGCAGCAACCAATCAAG 60.938 52.381 0.00 0.00 0.00 3.02
846 858 2.158813 TCCACCTCACTTGACTTGAACC 60.159 50.000 0.00 0.00 0.00 3.62
852 864 0.535102 ACTTGACTTGAACCCTGCCG 60.535 55.000 0.00 0.00 0.00 5.69
886 898 3.465403 CTCCCCGCCTCTCACCAG 61.465 72.222 0.00 0.00 0.00 4.00
887 899 4.316823 TCCCCGCCTCTCACCAGT 62.317 66.667 0.00 0.00 0.00 4.00
888 900 3.775654 CCCCGCCTCTCACCAGTC 61.776 72.222 0.00 0.00 0.00 3.51
889 901 2.997315 CCCGCCTCTCACCAGTCA 60.997 66.667 0.00 0.00 0.00 3.41
890 902 2.262915 CCGCCTCTCACCAGTCAC 59.737 66.667 0.00 0.00 0.00 3.67
891 903 2.262915 CGCCTCTCACCAGTCACC 59.737 66.667 0.00 0.00 0.00 4.02
892 904 2.574018 CGCCTCTCACCAGTCACCA 61.574 63.158 0.00 0.00 0.00 4.17
898 910 2.280797 CACCAGTCACCACCACCG 60.281 66.667 0.00 0.00 0.00 4.94
944 956 3.726486 CGAGAGATATCGCCGATCACTTC 60.726 52.174 1.25 0.00 35.66 3.01
1017 1029 1.306141 AATGGAGAGCGTGGAGGGA 60.306 57.895 0.00 0.00 0.00 4.20
1059 1071 2.320587 GCAGCTTGTGGTGTCGGAG 61.321 63.158 0.00 0.00 43.05 4.63
1297 1309 5.126545 ACCAACACCAAGAAGAGGTAAAAAC 59.873 40.000 0.00 0.00 37.23 2.43
1302 1314 5.748630 CACCAAGAAGAGGTAAAAACAAAGC 59.251 40.000 0.00 0.00 37.23 3.51
1354 1384 3.068590 GGATCATCCAAAATGCACCGAAT 59.931 43.478 0.00 0.00 36.28 3.34
1372 1402 5.163457 ACCGAATTGTTGTTGAATTCTTGGT 60.163 36.000 7.05 0.00 37.57 3.67
1374 1404 5.748152 CGAATTGTTGTTGAATTCTTGGTGT 59.252 36.000 7.05 0.00 37.57 4.16
1375 1405 6.074888 CGAATTGTTGTTGAATTCTTGGTGTC 60.075 38.462 7.05 0.00 37.57 3.67
1511 1545 4.899239 GGACATCCTCGGCGCCAG 62.899 72.222 28.98 21.57 0.00 4.85
1645 1679 4.655647 AGCACACCTGCAGGCCAG 62.656 66.667 33.06 23.72 46.97 4.85
1806 1840 4.459089 GCCTCGCCTGTGGAGTCC 62.459 72.222 0.73 0.73 0.00 3.85
1973 2007 3.056328 GACCTTCGGCCTTGGTGC 61.056 66.667 14.56 4.75 33.74 5.01
2056 2097 3.260100 CCCCTGCCTGTCCTTGGT 61.260 66.667 0.00 0.00 0.00 3.67
2064 2105 1.657804 CCTGTCCTTGGTAAGAGGGT 58.342 55.000 0.00 0.00 34.93 4.34
2065 2106 2.829023 CCTGTCCTTGGTAAGAGGGTA 58.171 52.381 0.00 0.00 34.93 3.69
2170 2214 7.506328 ACTACAGTTTTGATTGGTTAGGTTC 57.494 36.000 0.00 0.00 0.00 3.62
2438 2484 1.670791 AAACACGTCCGGTTTCATGT 58.329 45.000 0.00 0.00 33.39 3.21
2451 2503 4.084537 CGGTTTCATGTTGTCAGACACTAC 60.085 45.833 1.52 0.08 31.30 2.73
2462 2514 5.348986 TGTCAGACACTACTGTGAGAAAAC 58.651 41.667 0.00 0.00 46.55 2.43
2468 2520 6.703607 AGACACTACTGTGAGAAAACAAGATG 59.296 38.462 3.03 0.00 46.55 2.90
2585 2638 2.738846 GCTCGAGCTCAAATGTTCTTGA 59.261 45.455 29.88 0.00 38.21 3.02
2653 2710 9.571810 AAATTTCTGATTTTTCTTTTGGCAAAC 57.428 25.926 13.10 0.00 0.00 2.93
2774 2835 6.699204 TCTGAAAGTAGCATCTTCGAATCATC 59.301 38.462 0.00 0.00 33.76 2.92
2775 2836 6.340522 TGAAAGTAGCATCTTCGAATCATCA 58.659 36.000 0.00 0.00 0.00 3.07
2780 2841 8.218338 AGTAGCATCTTCGAATCATCATTTTT 57.782 30.769 0.00 0.00 0.00 1.94
2803 2864 2.147958 GCCACGACTTCCACAAATGTA 58.852 47.619 0.00 0.00 0.00 2.29
2894 2957 8.609617 TTTTCTTCATCTCTACTCCTAATGGA 57.390 34.615 0.00 0.00 40.69 3.41
2907 2970 5.537300 TCCTAATGGAGCAGTTGATAGTC 57.463 43.478 0.00 0.00 37.46 2.59
2908 2971 5.211973 TCCTAATGGAGCAGTTGATAGTCT 58.788 41.667 0.00 0.00 37.46 3.24
2909 2972 5.303078 TCCTAATGGAGCAGTTGATAGTCTC 59.697 44.000 0.00 0.00 37.46 3.36
2910 2973 3.724508 ATGGAGCAGTTGATAGTCTCG 57.275 47.619 0.00 0.00 0.00 4.04
2911 2974 1.135139 TGGAGCAGTTGATAGTCTCGC 59.865 52.381 0.00 0.00 0.00 5.03
2912 2975 1.407258 GGAGCAGTTGATAGTCTCGCT 59.593 52.381 0.00 0.00 0.00 4.93
2913 2976 2.159170 GGAGCAGTTGATAGTCTCGCTT 60.159 50.000 0.00 0.00 0.00 4.68
2914 2977 3.516615 GAGCAGTTGATAGTCTCGCTTT 58.483 45.455 0.00 0.00 0.00 3.51
2915 2978 3.516615 AGCAGTTGATAGTCTCGCTTTC 58.483 45.455 0.00 0.00 0.00 2.62
2916 2979 3.056536 AGCAGTTGATAGTCTCGCTTTCA 60.057 43.478 0.00 0.00 34.20 2.69
2917 2980 3.305629 GCAGTTGATAGTCTCGCTTTCAG 59.694 47.826 0.00 0.00 36.71 3.02
2918 2981 3.862267 CAGTTGATAGTCTCGCTTTCAGG 59.138 47.826 0.00 0.00 36.71 3.86
2919 2982 3.511934 AGTTGATAGTCTCGCTTTCAGGT 59.488 43.478 0.00 0.00 36.71 4.00
2920 2983 4.021016 AGTTGATAGTCTCGCTTTCAGGTT 60.021 41.667 0.00 0.00 36.71 3.50
2921 2984 4.537135 TGATAGTCTCGCTTTCAGGTTT 57.463 40.909 0.00 0.00 31.71 3.27
2922 2985 4.894784 TGATAGTCTCGCTTTCAGGTTTT 58.105 39.130 0.00 0.00 31.71 2.43
2923 2986 5.305585 TGATAGTCTCGCTTTCAGGTTTTT 58.694 37.500 0.00 0.00 31.71 1.94
2943 3006 4.463050 TTTTTGTCCCACCTTCTATGGT 57.537 40.909 0.00 0.00 41.77 3.55
2944 3007 4.463050 TTTTGTCCCACCTTCTATGGTT 57.537 40.909 0.00 0.00 38.45 3.67
2945 3008 4.463050 TTTGTCCCACCTTCTATGGTTT 57.537 40.909 0.00 0.00 38.45 3.27
2946 3009 4.463050 TTGTCCCACCTTCTATGGTTTT 57.537 40.909 0.00 0.00 38.45 2.43
2947 3010 4.463050 TGTCCCACCTTCTATGGTTTTT 57.537 40.909 0.00 0.00 38.45 1.94
2964 3027 2.963599 TTTTTGGTACCTCCTCCCAC 57.036 50.000 14.36 0.00 37.07 4.61
2965 3028 1.069775 TTTTGGTACCTCCTCCCACC 58.930 55.000 14.36 0.00 37.07 4.61
2966 3029 0.195096 TTTGGTACCTCCTCCCACCT 59.805 55.000 14.36 0.00 37.07 4.00
2967 3030 0.195096 TTGGTACCTCCTCCCACCTT 59.805 55.000 14.36 0.00 37.07 3.50
2968 3031 0.252558 TGGTACCTCCTCCCACCTTC 60.253 60.000 14.36 0.00 37.07 3.46
2969 3032 1.328430 GGTACCTCCTCCCACCTTCG 61.328 65.000 4.06 0.00 0.00 3.79
2970 3033 1.684734 TACCTCCTCCCACCTTCGC 60.685 63.158 0.00 0.00 0.00 4.70
2971 3034 2.164332 TACCTCCTCCCACCTTCGCT 62.164 60.000 0.00 0.00 0.00 4.93
2972 3035 2.581354 CTCCTCCCACCTTCGCTG 59.419 66.667 0.00 0.00 0.00 5.18
2973 3036 1.984570 CTCCTCCCACCTTCGCTGA 60.985 63.158 0.00 0.00 0.00 4.26
2974 3037 1.306141 TCCTCCCACCTTCGCTGAT 60.306 57.895 0.00 0.00 0.00 2.90
2975 3038 0.909610 TCCTCCCACCTTCGCTGATT 60.910 55.000 0.00 0.00 0.00 2.57
2976 3039 0.035056 CCTCCCACCTTCGCTGATTT 60.035 55.000 0.00 0.00 0.00 2.17
2977 3040 1.614317 CCTCCCACCTTCGCTGATTTT 60.614 52.381 0.00 0.00 0.00 1.82
2978 3041 2.162681 CTCCCACCTTCGCTGATTTTT 58.837 47.619 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.545105 AGTCAAACTTTGCAAATATTGATCAAA 57.455 25.926 28.06 13.30 30.40 2.69
42 43 9.545105 AAGTCAAACTTTGCAAATATTGATCAA 57.455 25.926 28.06 11.26 34.11 2.57
43 44 9.545105 AAAGTCAAACTTTGCAAATATTGATCA 57.455 25.926 28.06 13.80 45.83 2.92
80 81 9.147732 CCATATTGTAGTGCCCATAGATATAGA 57.852 37.037 0.00 0.00 0.00 1.98
81 82 9.147732 TCCATATTGTAGTGCCCATAGATATAG 57.852 37.037 0.00 0.00 0.00 1.31
82 83 9.500701 TTCCATATTGTAGTGCCCATAGATATA 57.499 33.333 0.00 0.00 0.00 0.86
83 84 7.995052 TCCATATTGTAGTGCCCATAGATAT 57.005 36.000 0.00 0.00 0.00 1.63
84 85 7.806680 TTCCATATTGTAGTGCCCATAGATA 57.193 36.000 0.00 0.00 0.00 1.98
85 86 6.702449 TTCCATATTGTAGTGCCCATAGAT 57.298 37.500 0.00 0.00 0.00 1.98
86 87 6.328934 TCTTTCCATATTGTAGTGCCCATAGA 59.671 38.462 0.00 0.00 0.00 1.98
87 88 6.533730 TCTTTCCATATTGTAGTGCCCATAG 58.466 40.000 0.00 0.00 0.00 2.23
88 89 6.508030 TCTTTCCATATTGTAGTGCCCATA 57.492 37.500 0.00 0.00 0.00 2.74
89 90 5.387113 TCTTTCCATATTGTAGTGCCCAT 57.613 39.130 0.00 0.00 0.00 4.00
90 91 4.853468 TCTTTCCATATTGTAGTGCCCA 57.147 40.909 0.00 0.00 0.00 5.36
91 92 5.067805 CCTTTCTTTCCATATTGTAGTGCCC 59.932 44.000 0.00 0.00 0.00 5.36
92 93 5.885912 TCCTTTCTTTCCATATTGTAGTGCC 59.114 40.000 0.00 0.00 0.00 5.01
93 94 6.599638 ACTCCTTTCTTTCCATATTGTAGTGC 59.400 38.462 0.00 0.00 0.00 4.40
94 95 9.099454 GTACTCCTTTCTTTCCATATTGTAGTG 57.901 37.037 0.00 0.00 0.00 2.74
95 96 7.980099 CGTACTCCTTTCTTTCCATATTGTAGT 59.020 37.037 0.00 0.00 0.00 2.73
96 97 8.195436 TCGTACTCCTTTCTTTCCATATTGTAG 58.805 37.037 0.00 0.00 0.00 2.74
97 98 8.070034 TCGTACTCCTTTCTTTCCATATTGTA 57.930 34.615 0.00 0.00 0.00 2.41
98 99 6.942976 TCGTACTCCTTTCTTTCCATATTGT 58.057 36.000 0.00 0.00 0.00 2.71
99 100 6.480320 CCTCGTACTCCTTTCTTTCCATATTG 59.520 42.308 0.00 0.00 0.00 1.90
100 101 6.383147 TCCTCGTACTCCTTTCTTTCCATATT 59.617 38.462 0.00 0.00 0.00 1.28
101 102 5.897824 TCCTCGTACTCCTTTCTTTCCATAT 59.102 40.000 0.00 0.00 0.00 1.78
102 103 5.126707 GTCCTCGTACTCCTTTCTTTCCATA 59.873 44.000 0.00 0.00 0.00 2.74
103 104 4.081586 GTCCTCGTACTCCTTTCTTTCCAT 60.082 45.833 0.00 0.00 0.00 3.41
104 105 3.257624 GTCCTCGTACTCCTTTCTTTCCA 59.742 47.826 0.00 0.00 0.00 3.53
105 106 3.257624 TGTCCTCGTACTCCTTTCTTTCC 59.742 47.826 0.00 0.00 0.00 3.13
106 107 4.236147 GTGTCCTCGTACTCCTTTCTTTC 58.764 47.826 0.00 0.00 0.00 2.62
107 108 3.640029 TGTGTCCTCGTACTCCTTTCTTT 59.360 43.478 0.00 0.00 0.00 2.52
108 109 3.228453 TGTGTCCTCGTACTCCTTTCTT 58.772 45.455 0.00 0.00 0.00 2.52
109 110 2.872732 TGTGTCCTCGTACTCCTTTCT 58.127 47.619 0.00 0.00 0.00 2.52
110 111 3.243636 TGTTGTGTCCTCGTACTCCTTTC 60.244 47.826 0.00 0.00 0.00 2.62
111 112 2.696707 TGTTGTGTCCTCGTACTCCTTT 59.303 45.455 0.00 0.00 0.00 3.11
112 113 2.313317 TGTTGTGTCCTCGTACTCCTT 58.687 47.619 0.00 0.00 0.00 3.36
113 114 1.991121 TGTTGTGTCCTCGTACTCCT 58.009 50.000 0.00 0.00 0.00 3.69
114 115 3.442977 ACTATGTTGTGTCCTCGTACTCC 59.557 47.826 0.00 0.00 0.00 3.85
115 116 4.698583 ACTATGTTGTGTCCTCGTACTC 57.301 45.455 0.00 0.00 0.00 2.59
116 117 4.806330 CAACTATGTTGTGTCCTCGTACT 58.194 43.478 2.60 0.00 0.00 2.73
117 118 3.367025 GCAACTATGTTGTGTCCTCGTAC 59.633 47.826 11.35 0.00 0.00 3.67
118 119 3.581755 GCAACTATGTTGTGTCCTCGTA 58.418 45.455 11.35 0.00 0.00 3.43
119 120 2.413837 GCAACTATGTTGTGTCCTCGT 58.586 47.619 11.35 0.00 0.00 4.18
120 121 1.732259 GGCAACTATGTTGTGTCCTCG 59.268 52.381 11.35 0.00 0.00 4.63
121 122 2.744202 CTGGCAACTATGTTGTGTCCTC 59.256 50.000 11.35 0.00 37.61 3.71
122 123 2.783135 CTGGCAACTATGTTGTGTCCT 58.217 47.619 11.35 0.00 37.61 3.85
123 124 1.200020 GCTGGCAACTATGTTGTGTCC 59.800 52.381 11.35 5.71 37.61 4.02
124 125 2.154462 AGCTGGCAACTATGTTGTGTC 58.846 47.619 11.35 3.89 37.61 3.67
125 126 2.276732 AGCTGGCAACTATGTTGTGT 57.723 45.000 11.35 0.00 37.61 3.72
126 127 2.294233 ACAAGCTGGCAACTATGTTGTG 59.706 45.455 11.35 4.27 37.61 3.33
127 128 2.294233 CACAAGCTGGCAACTATGTTGT 59.706 45.455 11.35 0.00 37.61 3.32
128 129 2.294233 ACACAAGCTGGCAACTATGTTG 59.706 45.455 6.12 6.12 37.61 3.33
129 130 2.586425 ACACAAGCTGGCAACTATGTT 58.414 42.857 2.74 0.00 37.61 2.71
130 131 2.276732 ACACAAGCTGGCAACTATGT 57.723 45.000 2.74 2.74 37.61 2.29
131 132 3.648339 AAACACAAGCTGGCAACTATG 57.352 42.857 0.00 0.00 37.61 2.23
132 133 4.141287 TGTAAACACAAGCTGGCAACTAT 58.859 39.130 0.00 0.00 37.61 2.12
133 134 3.546724 TGTAAACACAAGCTGGCAACTA 58.453 40.909 0.00 0.00 37.61 2.24
134 135 2.374184 TGTAAACACAAGCTGGCAACT 58.626 42.857 0.00 0.00 37.61 3.16
135 136 2.861462 TGTAAACACAAGCTGGCAAC 57.139 45.000 0.00 0.00 0.00 4.17
136 137 5.119931 CTTATGTAAACACAAGCTGGCAA 57.880 39.130 0.00 0.00 0.00 4.52
137 138 4.764679 CTTATGTAAACACAAGCTGGCA 57.235 40.909 0.00 0.00 0.00 4.92
143 144 4.612712 CGGGTGTGCTTATGTAAACACAAG 60.613 45.833 9.76 0.00 41.98 3.16
144 145 3.251245 CGGGTGTGCTTATGTAAACACAA 59.749 43.478 9.76 0.00 41.98 3.33
145 146 2.809119 CGGGTGTGCTTATGTAAACACA 59.191 45.455 5.21 5.21 43.72 3.72
146 147 2.160813 CCGGGTGTGCTTATGTAAACAC 59.839 50.000 0.00 0.00 41.71 3.32
147 148 2.224572 ACCGGGTGTGCTTATGTAAACA 60.225 45.455 6.32 0.00 0.00 2.83
148 149 2.417586 GACCGGGTGTGCTTATGTAAAC 59.582 50.000 3.30 0.00 0.00 2.01
149 150 2.303600 AGACCGGGTGTGCTTATGTAAA 59.696 45.455 3.30 0.00 0.00 2.01
150 151 1.903860 AGACCGGGTGTGCTTATGTAA 59.096 47.619 3.30 0.00 0.00 2.41
151 152 1.563924 AGACCGGGTGTGCTTATGTA 58.436 50.000 3.30 0.00 0.00 2.29
152 153 0.690762 AAGACCGGGTGTGCTTATGT 59.309 50.000 3.30 0.00 0.00 2.29
153 154 1.821216 AAAGACCGGGTGTGCTTATG 58.179 50.000 3.30 0.00 0.00 1.90
154 155 2.579410 AAAAGACCGGGTGTGCTTAT 57.421 45.000 3.30 0.00 0.00 1.73
155 156 2.351706 AAAAAGACCGGGTGTGCTTA 57.648 45.000 3.30 0.00 0.00 3.09
156 157 1.951602 GTAAAAAGACCGGGTGTGCTT 59.048 47.619 3.30 0.00 0.00 3.91
157 158 1.134037 TGTAAAAAGACCGGGTGTGCT 60.134 47.619 3.30 0.00 0.00 4.40
158 159 1.310904 TGTAAAAAGACCGGGTGTGC 58.689 50.000 3.30 0.00 0.00 4.57
159 160 4.758165 ACTTATGTAAAAAGACCGGGTGTG 59.242 41.667 3.30 0.00 0.00 3.82
160 161 4.976864 ACTTATGTAAAAAGACCGGGTGT 58.023 39.130 3.30 0.00 0.00 4.16
161 162 5.933463 TGTACTTATGTAAAAAGACCGGGTG 59.067 40.000 3.30 0.00 0.00 4.61
162 163 6.112927 TGTACTTATGTAAAAAGACCGGGT 57.887 37.500 6.32 0.00 0.00 5.28
163 164 6.427547 TGTTGTACTTATGTAAAAAGACCGGG 59.572 38.462 6.32 0.00 28.61 5.73
164 165 7.424227 TGTTGTACTTATGTAAAAAGACCGG 57.576 36.000 0.00 0.00 28.61 5.28
165 166 7.960738 CCATGTTGTACTTATGTAAAAAGACCG 59.039 37.037 0.00 0.00 28.61 4.79
166 167 8.241367 CCCATGTTGTACTTATGTAAAAAGACC 58.759 37.037 0.00 0.00 28.61 3.85
167 168 9.005777 TCCCATGTTGTACTTATGTAAAAAGAC 57.994 33.333 0.00 0.00 28.61 3.01
168 169 9.575868 TTCCCATGTTGTACTTATGTAAAAAGA 57.424 29.630 0.00 0.00 28.61 2.52
169 170 9.840427 CTTCCCATGTTGTACTTATGTAAAAAG 57.160 33.333 0.00 0.00 28.61 2.27
170 171 8.798402 CCTTCCCATGTTGTACTTATGTAAAAA 58.202 33.333 0.00 0.00 28.61 1.94
171 172 7.945664 ACCTTCCCATGTTGTACTTATGTAAAA 59.054 33.333 0.00 0.00 0.00 1.52
172 173 7.463431 ACCTTCCCATGTTGTACTTATGTAAA 58.537 34.615 0.00 0.00 0.00 2.01
173 174 7.023171 ACCTTCCCATGTTGTACTTATGTAA 57.977 36.000 0.00 0.00 0.00 2.41
174 175 6.630203 ACCTTCCCATGTTGTACTTATGTA 57.370 37.500 0.00 0.00 0.00 2.29
175 176 5.514500 ACCTTCCCATGTTGTACTTATGT 57.486 39.130 0.00 0.00 0.00 2.29
176 177 5.943416 TGAACCTTCCCATGTTGTACTTATG 59.057 40.000 0.00 0.00 0.00 1.90
177 178 5.944007 GTGAACCTTCCCATGTTGTACTTAT 59.056 40.000 0.00 0.00 0.00 1.73
178 179 5.072600 AGTGAACCTTCCCATGTTGTACTTA 59.927 40.000 0.00 0.00 0.00 2.24
179 180 4.141251 AGTGAACCTTCCCATGTTGTACTT 60.141 41.667 0.00 0.00 0.00 2.24
180 181 3.394606 AGTGAACCTTCCCATGTTGTACT 59.605 43.478 0.00 0.00 0.00 2.73
181 182 3.751518 AGTGAACCTTCCCATGTTGTAC 58.248 45.455 0.00 0.00 0.00 2.90
182 183 3.556213 CGAGTGAACCTTCCCATGTTGTA 60.556 47.826 0.00 0.00 0.00 2.41
183 184 2.810400 CGAGTGAACCTTCCCATGTTGT 60.810 50.000 0.00 0.00 0.00 3.32
184 185 1.806542 CGAGTGAACCTTCCCATGTTG 59.193 52.381 0.00 0.00 0.00 3.33
185 186 1.271379 CCGAGTGAACCTTCCCATGTT 60.271 52.381 0.00 0.00 0.00 2.71
186 187 0.324943 CCGAGTGAACCTTCCCATGT 59.675 55.000 0.00 0.00 0.00 3.21
187 188 0.324943 ACCGAGTGAACCTTCCCATG 59.675 55.000 0.00 0.00 0.00 3.66
188 189 1.946984 TACCGAGTGAACCTTCCCAT 58.053 50.000 0.00 0.00 0.00 4.00
189 190 1.946984 ATACCGAGTGAACCTTCCCA 58.053 50.000 0.00 0.00 0.00 4.37
190 191 4.186926 GTTAATACCGAGTGAACCTTCCC 58.813 47.826 0.00 0.00 0.00 3.97
191 192 4.186926 GGTTAATACCGAGTGAACCTTCC 58.813 47.826 0.00 0.00 37.23 3.46
192 193 4.081254 AGGGTTAATACCGAGTGAACCTTC 60.081 45.833 0.00 0.00 46.04 3.46
193 194 3.842436 AGGGTTAATACCGAGTGAACCTT 59.158 43.478 0.00 0.00 46.04 3.50
194 195 3.447950 AGGGTTAATACCGAGTGAACCT 58.552 45.455 0.00 0.00 46.04 3.50
195 196 3.900966 AGGGTTAATACCGAGTGAACC 57.099 47.619 0.00 0.00 46.04 3.62
196 197 7.854557 AATTAAGGGTTAATACCGAGTGAAC 57.145 36.000 0.00 0.00 46.04 3.18
197 198 8.866970 AAAATTAAGGGTTAATACCGAGTGAA 57.133 30.769 0.00 0.00 46.04 3.18
198 199 8.732531 CAAAAATTAAGGGTTAATACCGAGTGA 58.267 33.333 0.00 0.00 46.04 3.41
199 200 8.517056 ACAAAAATTAAGGGTTAATACCGAGTG 58.483 33.333 0.00 0.00 46.04 3.51
200 201 8.640063 ACAAAAATTAAGGGTTAATACCGAGT 57.360 30.769 0.00 0.00 46.04 4.18
219 220 9.364989 CAGGTTGATTCACTTCTTTTACAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
220 221 8.527810 ACAGGTTGATTCACTTCTTTTACAAAA 58.472 29.630 0.00 0.00 0.00 2.44
221 222 7.973388 CACAGGTTGATTCACTTCTTTTACAAA 59.027 33.333 0.00 0.00 0.00 2.83
222 223 7.416213 CCACAGGTTGATTCACTTCTTTTACAA 60.416 37.037 0.00 0.00 0.00 2.41
223 224 6.039270 CCACAGGTTGATTCACTTCTTTTACA 59.961 38.462 0.00 0.00 0.00 2.41
224 225 6.039382 ACCACAGGTTGATTCACTTCTTTTAC 59.961 38.462 0.00 0.00 27.29 2.01
225 226 6.126409 ACCACAGGTTGATTCACTTCTTTTA 58.874 36.000 0.00 0.00 27.29 1.52
226 227 4.956075 ACCACAGGTTGATTCACTTCTTTT 59.044 37.500 0.00 0.00 27.29 2.27
227 228 4.536765 ACCACAGGTTGATTCACTTCTTT 58.463 39.130 0.00 0.00 27.29 2.52
228 229 4.170468 ACCACAGGTTGATTCACTTCTT 57.830 40.909 0.00 0.00 27.29 2.52
229 230 3.864789 ACCACAGGTTGATTCACTTCT 57.135 42.857 0.00 0.00 27.29 2.85
241 242 2.647299 TCATAACCATCCAACCACAGGT 59.353 45.455 0.00 0.00 37.65 4.00
242 243 3.364460 TCATAACCATCCAACCACAGG 57.636 47.619 0.00 0.00 0.00 4.00
243 244 5.707298 GGATATCATAACCATCCAACCACAG 59.293 44.000 4.83 0.00 38.50 3.66
244 245 5.457487 GGGATATCATAACCATCCAACCACA 60.457 44.000 4.83 0.00 40.09 4.17
245 246 5.010282 GGGATATCATAACCATCCAACCAC 58.990 45.833 4.83 0.00 40.09 4.16
246 247 4.263287 CGGGATATCATAACCATCCAACCA 60.263 45.833 4.83 0.00 40.09 3.67
247 248 4.261801 CGGGATATCATAACCATCCAACC 58.738 47.826 4.83 0.00 40.09 3.77
248 249 4.261801 CCGGGATATCATAACCATCCAAC 58.738 47.826 4.83 0.00 40.09 3.77
249 250 3.913799 ACCGGGATATCATAACCATCCAA 59.086 43.478 6.32 0.00 40.09 3.53
250 251 3.517901 GACCGGGATATCATAACCATCCA 59.482 47.826 6.32 0.00 40.09 3.41
251 252 3.118371 GGACCGGGATATCATAACCATCC 60.118 52.174 6.32 3.23 38.00 3.51
252 253 3.517901 TGGACCGGGATATCATAACCATC 59.482 47.826 6.32 0.00 0.00 3.51
253 254 3.263425 GTGGACCGGGATATCATAACCAT 59.737 47.826 6.32 0.00 0.00 3.55
254 255 2.635915 GTGGACCGGGATATCATAACCA 59.364 50.000 6.32 4.66 0.00 3.67
255 256 2.027469 GGTGGACCGGGATATCATAACC 60.027 54.545 6.32 0.00 0.00 2.85
256 257 2.635915 TGGTGGACCGGGATATCATAAC 59.364 50.000 6.32 0.00 39.43 1.89
257 258 2.903784 CTGGTGGACCGGGATATCATAA 59.096 50.000 6.32 0.00 38.76 1.90
258 259 2.536066 CTGGTGGACCGGGATATCATA 58.464 52.381 6.32 0.00 38.76 2.15
259 260 1.352083 CTGGTGGACCGGGATATCAT 58.648 55.000 6.32 0.00 38.76 2.45
260 261 2.834631 CTGGTGGACCGGGATATCA 58.165 57.895 6.32 0.00 38.76 2.15
267 268 1.302511 CTTGAACCTGGTGGACCGG 60.303 63.158 0.00 0.00 42.13 5.28
268 269 0.602905 GACTTGAACCTGGTGGACCG 60.603 60.000 0.00 0.00 39.43 4.79
269 270 0.250770 GGACTTGAACCTGGTGGACC 60.251 60.000 0.00 0.00 37.04 4.46
270 271 0.765510 AGGACTTGAACCTGGTGGAC 59.234 55.000 0.00 0.00 36.30 4.02
271 272 2.409064 TAGGACTTGAACCTGGTGGA 57.591 50.000 0.00 0.00 38.31 4.02
272 273 3.775316 AGTATAGGACTTGAACCTGGTGG 59.225 47.826 0.00 0.00 38.31 4.61
273 274 4.141914 GGAGTATAGGACTTGAACCTGGTG 60.142 50.000 0.00 0.00 39.06 4.17
274 275 4.031611 GGAGTATAGGACTTGAACCTGGT 58.968 47.826 0.00 0.00 39.06 4.00
275 276 3.388350 GGGAGTATAGGACTTGAACCTGG 59.612 52.174 0.00 0.00 39.06 4.45
276 277 4.290942 AGGGAGTATAGGACTTGAACCTG 58.709 47.826 0.00 0.00 39.06 4.00
277 278 4.628661 AGGGAGTATAGGACTTGAACCT 57.371 45.455 0.00 0.00 39.06 3.50
278 279 4.202131 CGAAGGGAGTATAGGACTTGAACC 60.202 50.000 0.00 0.00 39.06 3.62
279 280 4.401837 ACGAAGGGAGTATAGGACTTGAAC 59.598 45.833 0.00 0.00 39.06 3.18
280 281 4.607239 ACGAAGGGAGTATAGGACTTGAA 58.393 43.478 0.00 0.00 39.06 2.69
281 282 4.205587 GACGAAGGGAGTATAGGACTTGA 58.794 47.826 0.00 0.00 39.06 3.02
282 283 3.003482 CGACGAAGGGAGTATAGGACTTG 59.997 52.174 0.00 0.00 39.06 3.16
283 284 3.212685 CGACGAAGGGAGTATAGGACTT 58.787 50.000 0.00 0.00 39.06 3.01
284 285 2.486907 CCGACGAAGGGAGTATAGGACT 60.487 54.545 0.00 0.00 42.90 3.85
285 286 1.878734 CCGACGAAGGGAGTATAGGAC 59.121 57.143 0.00 0.00 0.00 3.85
286 287 1.770658 TCCGACGAAGGGAGTATAGGA 59.229 52.381 0.00 0.00 0.00 2.94
287 288 2.267174 TCCGACGAAGGGAGTATAGG 57.733 55.000 0.00 0.00 0.00 2.57
288 289 4.850347 ATTTCCGACGAAGGGAGTATAG 57.150 45.455 0.00 0.00 34.45 1.31
289 290 5.380043 AGTATTTCCGACGAAGGGAGTATA 58.620 41.667 0.00 0.00 34.45 1.47
290 291 4.213513 AGTATTTCCGACGAAGGGAGTAT 58.786 43.478 0.00 0.00 34.45 2.12
291 292 3.624777 AGTATTTCCGACGAAGGGAGTA 58.375 45.455 0.00 0.00 34.45 2.59
292 293 2.454538 AGTATTTCCGACGAAGGGAGT 58.545 47.619 0.00 0.00 34.45 3.85
293 294 3.187700 CAAGTATTTCCGACGAAGGGAG 58.812 50.000 0.00 0.00 34.45 4.30
294 295 2.564062 ACAAGTATTTCCGACGAAGGGA 59.436 45.455 0.00 0.00 0.00 4.20
295 296 2.928116 GACAAGTATTTCCGACGAAGGG 59.072 50.000 0.00 0.00 0.00 3.95
296 297 2.928116 GGACAAGTATTTCCGACGAAGG 59.072 50.000 0.00 0.00 0.00 3.46
297 298 3.846360 AGGACAAGTATTTCCGACGAAG 58.154 45.455 0.00 0.00 36.95 3.79
298 299 3.947910 AGGACAAGTATTTCCGACGAA 57.052 42.857 0.00 0.00 36.95 3.85
299 300 5.389859 TTTAGGACAAGTATTTCCGACGA 57.610 39.130 0.00 0.00 36.95 4.20
300 301 6.470557 TTTTTAGGACAAGTATTTCCGACG 57.529 37.500 0.00 0.00 36.95 5.12
301 302 8.036273 TGATTTTTAGGACAAGTATTTCCGAC 57.964 34.615 0.00 0.00 36.95 4.79
302 303 8.624367 TTGATTTTTAGGACAAGTATTTCCGA 57.376 30.769 0.00 0.00 36.95 4.55
303 304 9.289303 CATTGATTTTTAGGACAAGTATTTCCG 57.711 33.333 0.00 0.00 36.95 4.30
308 309 9.975218 AGGTACATTGATTTTTAGGACAAGTAT 57.025 29.630 0.00 0.00 0.00 2.12
310 311 9.449719 CTAGGTACATTGATTTTTAGGACAAGT 57.550 33.333 0.00 0.00 0.00 3.16
311 312 9.667107 TCTAGGTACATTGATTTTTAGGACAAG 57.333 33.333 0.00 0.00 0.00 3.16
312 313 9.444600 GTCTAGGTACATTGATTTTTAGGACAA 57.555 33.333 0.00 0.00 0.00 3.18
313 314 8.044908 GGTCTAGGTACATTGATTTTTAGGACA 58.955 37.037 0.00 0.00 0.00 4.02
314 315 8.265764 AGGTCTAGGTACATTGATTTTTAGGAC 58.734 37.037 0.00 0.00 0.00 3.85
315 316 8.388656 AGGTCTAGGTACATTGATTTTTAGGA 57.611 34.615 0.00 0.00 0.00 2.94
356 357 9.699410 TGTCTTAGAAATGGATAAAATGGATGT 57.301 29.630 0.00 0.00 0.00 3.06
368 369 9.456147 TCCGAAAATATTTGTCTTAGAAATGGA 57.544 29.630 0.39 0.22 0.00 3.41
369 370 9.503427 GTCCGAAAATATTTGTCTTAGAAATGG 57.497 33.333 0.39 0.00 0.00 3.16
370 371 9.210426 CGTCCGAAAATATTTGTCTTAGAAATG 57.790 33.333 0.39 0.00 0.00 2.32
371 372 8.395633 CCGTCCGAAAATATTTGTCTTAGAAAT 58.604 33.333 0.39 0.00 0.00 2.17
372 373 7.603404 TCCGTCCGAAAATATTTGTCTTAGAAA 59.397 33.333 0.39 0.00 0.00 2.52
373 374 7.098477 TCCGTCCGAAAATATTTGTCTTAGAA 58.902 34.615 0.39 0.00 0.00 2.10
374 375 6.632909 TCCGTCCGAAAATATTTGTCTTAGA 58.367 36.000 0.39 0.00 0.00 2.10
375 376 6.018994 CCTCCGTCCGAAAATATTTGTCTTAG 60.019 42.308 0.39 0.00 0.00 2.18
376 377 5.813672 CCTCCGTCCGAAAATATTTGTCTTA 59.186 40.000 0.39 0.00 0.00 2.10
377 378 4.634443 CCTCCGTCCGAAAATATTTGTCTT 59.366 41.667 0.39 0.00 0.00 3.01
378 379 4.189231 CCTCCGTCCGAAAATATTTGTCT 58.811 43.478 0.39 0.00 0.00 3.41
379 380 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
380 381 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
381 382 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
382 383 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
383 384 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
384 385 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
385 386 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
386 387 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
387 388 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
388 389 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
389 390 1.479323 CAAATACTCCCTCCGTCCGAA 59.521 52.381 0.00 0.00 0.00 4.30
390 391 1.108776 CAAATACTCCCTCCGTCCGA 58.891 55.000 0.00 0.00 0.00 4.55
391 392 1.108776 TCAAATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
392 393 5.011738 TCAATATCAAATACTCCCTCCGTCC 59.988 44.000 0.00 0.00 0.00 4.79
393 394 6.097915 TCAATATCAAATACTCCCTCCGTC 57.902 41.667 0.00 0.00 0.00 4.79
394 395 6.467677 CATCAATATCAAATACTCCCTCCGT 58.532 40.000 0.00 0.00 0.00 4.69
395 396 5.352569 GCATCAATATCAAATACTCCCTCCG 59.647 44.000 0.00 0.00 0.00 4.63
396 397 6.479884 AGCATCAATATCAAATACTCCCTCC 58.520 40.000 0.00 0.00 0.00 4.30
397 398 7.574592 GCAAGCATCAATATCAAATACTCCCTC 60.575 40.741 0.00 0.00 0.00 4.30
398 399 6.208204 GCAAGCATCAATATCAAATACTCCCT 59.792 38.462 0.00 0.00 0.00 4.20
399 400 6.016024 TGCAAGCATCAATATCAAATACTCCC 60.016 38.462 0.00 0.00 0.00 4.30
400 401 6.973843 TGCAAGCATCAATATCAAATACTCC 58.026 36.000 0.00 0.00 0.00 3.85
405 406 8.038944 GGGATAATGCAAGCATCAATATCAAAT 58.961 33.333 19.13 2.20 35.31 2.32
406 407 7.233962 AGGGATAATGCAAGCATCAATATCAAA 59.766 33.333 19.13 0.00 35.31 2.69
407 408 6.722590 AGGGATAATGCAAGCATCAATATCAA 59.277 34.615 19.13 0.00 35.31 2.57
408 409 6.152154 CAGGGATAATGCAAGCATCAATATCA 59.848 38.462 19.13 0.50 35.31 2.15
409 410 6.405508 CCAGGGATAATGCAAGCATCAATATC 60.406 42.308 8.14 11.30 35.31 1.63
410 411 5.421056 CCAGGGATAATGCAAGCATCAATAT 59.579 40.000 8.14 2.92 35.31 1.28
411 412 4.768448 CCAGGGATAATGCAAGCATCAATA 59.232 41.667 8.14 0.00 35.31 1.90
416 417 3.537795 ATCCAGGGATAATGCAAGCAT 57.462 42.857 0.86 0.86 38.46 3.79
421 422 8.010105 ACCTAAAATAAATCCAGGGATAATGCA 58.990 33.333 0.32 0.00 33.97 3.96
422 423 8.422577 ACCTAAAATAAATCCAGGGATAATGC 57.577 34.615 0.32 0.00 33.97 3.56
429 430 7.544217 CGTCAAAAACCTAAAATAAATCCAGGG 59.456 37.037 0.00 0.00 0.00 4.45
430 431 8.301002 TCGTCAAAAACCTAAAATAAATCCAGG 58.699 33.333 0.00 0.00 0.00 4.45
454 455 1.350193 CTCCCACTGAACGAACATCG 58.650 55.000 0.00 0.00 46.93 3.84
485 486 4.117661 AGGAGCTTCGCGGTCGAC 62.118 66.667 7.13 7.13 45.43 4.20
486 487 4.116328 CAGGAGCTTCGCGGTCGA 62.116 66.667 6.13 0.00 43.89 4.20
490 491 4.749310 AGCACAGGAGCTTCGCGG 62.749 66.667 6.13 0.00 43.70 6.46
491 492 3.485431 CAGCACAGGAGCTTCGCG 61.485 66.667 0.00 0.00 43.70 5.87
492 493 2.047844 TCAGCACAGGAGCTTCGC 60.048 61.111 0.00 0.00 43.70 4.70
493 494 0.320247 AAGTCAGCACAGGAGCTTCG 60.320 55.000 0.00 0.00 43.70 3.79
494 495 1.270518 TGAAGTCAGCACAGGAGCTTC 60.271 52.381 0.00 0.00 43.70 3.86
495 496 0.761187 TGAAGTCAGCACAGGAGCTT 59.239 50.000 0.00 0.00 43.70 3.74
497 498 2.680312 TATGAAGTCAGCACAGGAGC 57.320 50.000 0.00 0.00 0.00 4.70
498 499 5.879223 AGATTTTATGAAGTCAGCACAGGAG 59.121 40.000 0.00 0.00 0.00 3.69
499 500 5.809001 AGATTTTATGAAGTCAGCACAGGA 58.191 37.500 0.00 0.00 0.00 3.86
503 504 8.857216 CATTTTGAGATTTTATGAAGTCAGCAC 58.143 33.333 0.00 0.00 0.00 4.40
514 515 6.701400 GCCGGCATAACATTTTGAGATTTTAT 59.299 34.615 24.80 0.00 0.00 1.40
523 524 1.202405 GGAGGCCGGCATAACATTTTG 60.202 52.381 30.85 0.00 0.00 2.44
526 527 1.525995 CGGAGGCCGGCATAACATT 60.526 57.895 30.85 3.57 44.15 2.71
540 541 2.228582 CTCTATGAGCACATCTCCGGAG 59.771 54.545 26.32 26.32 41.18 4.63
541 542 2.158608 TCTCTATGAGCACATCTCCGGA 60.159 50.000 2.93 2.93 41.18 5.14
542 543 2.234143 TCTCTATGAGCACATCTCCGG 58.766 52.381 0.00 0.00 41.18 5.14
543 544 4.096231 CCTATCTCTATGAGCACATCTCCG 59.904 50.000 0.00 0.00 41.18 4.63
544 545 5.260424 TCCTATCTCTATGAGCACATCTCC 58.740 45.833 0.00 0.00 41.18 3.71
545 546 6.377996 ACATCCTATCTCTATGAGCACATCTC 59.622 42.308 0.00 0.00 42.23 2.75
546 547 6.153170 CACATCCTATCTCTATGAGCACATCT 59.847 42.308 0.00 0.00 37.87 2.90
549 554 4.021632 GCACATCCTATCTCTATGAGCACA 60.022 45.833 0.00 0.00 37.23 4.57
553 558 4.731720 CACGCACATCCTATCTCTATGAG 58.268 47.826 0.00 0.00 0.00 2.90
560 565 1.875009 CATGCACGCACATCCTATCT 58.125 50.000 0.00 0.00 0.00 1.98
561 566 0.236711 GCATGCACGCACATCCTATC 59.763 55.000 14.21 0.00 0.00 2.08
562 567 0.464193 TGCATGCACGCACATCCTAT 60.464 50.000 18.46 0.00 36.86 2.57
569 574 2.480224 AGATAAATGCATGCACGCAC 57.520 45.000 25.37 13.46 46.56 5.34
570 575 5.674318 GCATATAGATAAATGCATGCACGCA 60.674 40.000 25.37 11.02 46.19 5.24
572 577 7.836175 ACAAGCATATAGATAAATGCATGCACG 60.836 37.037 25.37 0.00 46.43 5.34
655 664 5.901276 AGATGGTCAAATGGATGGCTTTTAT 59.099 36.000 0.00 0.00 0.00 1.40
673 682 5.127031 GTGTATGCCCAAATGTTTAGATGGT 59.873 40.000 0.00 0.00 0.00 3.55
702 711 6.128117 TGCCCGTGAATTAAACACTTTCTATC 60.128 38.462 12.14 0.00 36.29 2.08
784 796 0.603065 GGGATTGTTTGGACTGCCAC 59.397 55.000 0.00 0.00 45.94 5.01
846 858 2.846371 GCCATCTTATAGCGGCAGG 58.154 57.895 1.45 0.00 44.25 4.85
852 864 2.094442 GGGAGACGAGCCATCTTATAGC 60.094 54.545 0.00 0.00 0.00 2.97
886 898 4.699522 GGAGGCGGTGGTGGTGAC 62.700 72.222 0.00 0.00 0.00 3.67
887 899 4.954118 AGGAGGCGGTGGTGGTGA 62.954 66.667 0.00 0.00 0.00 4.02
888 900 4.394712 GAGGAGGCGGTGGTGGTG 62.395 72.222 0.00 0.00 0.00 4.17
889 901 4.640690 AGAGGAGGCGGTGGTGGT 62.641 66.667 0.00 0.00 0.00 4.16
890 902 3.775654 GAGAGGAGGCGGTGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
891 903 3.775654 GGAGAGGAGGCGGTGGTG 61.776 72.222 0.00 0.00 0.00 4.17
892 904 3.999285 AGGAGAGGAGGCGGTGGT 61.999 66.667 0.00 0.00 0.00 4.16
898 910 2.686835 AGGTGCAGGAGAGGAGGC 60.687 66.667 0.00 0.00 0.00 4.70
944 956 0.176910 GGAGAAGGAAGGAAGCGAGG 59.823 60.000 0.00 0.00 0.00 4.63
1344 1374 3.724508 TTCAACAACAATTCGGTGCAT 57.275 38.095 0.00 0.00 0.00 3.96
1348 1378 5.163457 ACCAAGAATTCAACAACAATTCGGT 60.163 36.000 8.44 0.00 42.68 4.69
1354 1384 5.448496 CGAGACACCAAGAATTCAACAACAA 60.448 40.000 8.44 0.00 0.00 2.83
1372 1402 0.249868 CTGCCAAGAACCACGAGACA 60.250 55.000 0.00 0.00 0.00 3.41
1374 1404 1.118965 TCCTGCCAAGAACCACGAGA 61.119 55.000 0.00 0.00 0.00 4.04
1375 1405 0.250295 TTCCTGCCAAGAACCACGAG 60.250 55.000 0.00 0.00 0.00 4.18
1402 1436 3.374402 CTGGCTCGTCCACCTCGT 61.374 66.667 0.00 0.00 40.72 4.18
1821 1855 0.108329 GGTACGGTGACATGGTCAGG 60.108 60.000 0.00 0.00 43.57 3.86
1973 2007 1.466167 CTCACATGAAGAAGTTGGGCG 59.534 52.381 0.00 0.00 0.00 6.13
2056 2097 4.673968 TGCTCTGTTCTTCTACCCTCTTA 58.326 43.478 0.00 0.00 0.00 2.10
2064 2105 4.692625 GCACTTTGATGCTCTGTTCTTCTA 59.307 41.667 0.00 0.00 42.62 2.10
2065 2106 3.501445 GCACTTTGATGCTCTGTTCTTCT 59.499 43.478 0.00 0.00 42.62 2.85
2147 2191 7.228706 ACAGAACCTAACCAATCAAAACTGTAG 59.771 37.037 0.00 0.00 33.10 2.74
2148 2192 7.057894 ACAGAACCTAACCAATCAAAACTGTA 58.942 34.615 0.00 0.00 33.10 2.74
2149 2193 5.891551 ACAGAACCTAACCAATCAAAACTGT 59.108 36.000 0.00 0.00 0.00 3.55
2170 2214 9.474920 TGCTTTCCTTACAAAATAAATCAACAG 57.525 29.630 0.00 0.00 0.00 3.16
2223 2267 4.841422 ACAGTTCATGGATTCAGGAGAAG 58.159 43.478 0.00 0.00 37.14 2.85
2438 2484 5.592104 TTTCTCACAGTAGTGTCTGACAA 57.408 39.130 12.81 0.00 46.01 3.18
2451 2503 4.556942 TGTGCATCTTGTTTTCTCACAG 57.443 40.909 0.00 0.00 0.00 3.66
2462 2514 3.087031 AGACCTCCAAATGTGCATCTTG 58.913 45.455 0.00 0.00 0.00 3.02
2468 2520 5.415701 TCTTTATTGAGACCTCCAAATGTGC 59.584 40.000 0.00 0.00 0.00 4.57
2677 2734 7.949903 TGTGTTTCCATGATGAGAAAATTTG 57.050 32.000 9.56 0.00 33.98 2.32
2685 2742 5.047872 TCCACAAATGTGTTTCCATGATGAG 60.048 40.000 12.21 0.00 44.21 2.90
2780 2841 1.464734 TTTGTGGAAGTCGTGGCAAA 58.535 45.000 0.00 0.00 0.00 3.68
2885 2948 5.211973 AGACTATCAACTGCTCCATTAGGA 58.788 41.667 0.00 0.00 43.21 2.94
2886 2949 5.537188 GAGACTATCAACTGCTCCATTAGG 58.463 45.833 0.00 0.00 0.00 2.69
2887 2950 5.218885 CGAGACTATCAACTGCTCCATTAG 58.781 45.833 0.00 0.00 0.00 1.73
2888 2951 4.499865 GCGAGACTATCAACTGCTCCATTA 60.500 45.833 0.00 0.00 0.00 1.90
2889 2952 3.739519 GCGAGACTATCAACTGCTCCATT 60.740 47.826 0.00 0.00 0.00 3.16
2890 2953 2.223923 GCGAGACTATCAACTGCTCCAT 60.224 50.000 0.00 0.00 0.00 3.41
2891 2954 1.135139 GCGAGACTATCAACTGCTCCA 59.865 52.381 0.00 0.00 0.00 3.86
2892 2955 1.407258 AGCGAGACTATCAACTGCTCC 59.593 52.381 0.00 0.00 0.00 4.70
2893 2956 2.861462 AGCGAGACTATCAACTGCTC 57.139 50.000 0.00 0.00 0.00 4.26
2894 2957 3.056536 TGAAAGCGAGACTATCAACTGCT 60.057 43.478 0.00 0.00 0.00 4.24
2895 2958 3.254060 TGAAAGCGAGACTATCAACTGC 58.746 45.455 0.00 0.00 0.00 4.40
2896 2959 3.862267 CCTGAAAGCGAGACTATCAACTG 59.138 47.826 0.00 0.00 0.00 3.16
2897 2960 3.511934 ACCTGAAAGCGAGACTATCAACT 59.488 43.478 0.00 0.00 0.00 3.16
2898 2961 3.851098 ACCTGAAAGCGAGACTATCAAC 58.149 45.455 0.00 0.00 0.00 3.18
2899 2962 4.537135 AACCTGAAAGCGAGACTATCAA 57.463 40.909 0.00 0.00 0.00 2.57
2900 2963 4.537135 AAACCTGAAAGCGAGACTATCA 57.463 40.909 0.00 0.00 0.00 2.15
2901 2964 5.864628 AAAAACCTGAAAGCGAGACTATC 57.135 39.130 0.00 0.00 0.00 2.08
2922 2985 4.463050 ACCATAGAAGGTGGGACAAAAA 57.537 40.909 0.00 0.00 44.16 1.94
2923 2986 4.463050 AACCATAGAAGGTGGGACAAAA 57.537 40.909 0.00 0.00 44.16 2.44
2924 2987 4.463050 AAACCATAGAAGGTGGGACAAA 57.537 40.909 0.00 0.00 44.16 2.83
2925 2988 4.463050 AAAACCATAGAAGGTGGGACAA 57.537 40.909 0.00 0.00 44.16 3.18
2926 2989 4.463050 AAAAACCATAGAAGGTGGGACA 57.537 40.909 0.00 0.00 42.25 4.02
2945 3008 1.426215 GGTGGGAGGAGGTACCAAAAA 59.574 52.381 15.94 0.00 42.04 1.94
2946 3009 1.069775 GGTGGGAGGAGGTACCAAAA 58.930 55.000 15.94 0.00 42.04 2.44
2947 3010 0.195096 AGGTGGGAGGAGGTACCAAA 59.805 55.000 15.94 0.00 42.04 3.28
2948 3011 0.195096 AAGGTGGGAGGAGGTACCAA 59.805 55.000 15.94 0.00 42.04 3.67
2949 3012 0.252558 GAAGGTGGGAGGAGGTACCA 60.253 60.000 15.94 0.00 42.04 3.25
2950 3013 1.328430 CGAAGGTGGGAGGAGGTACC 61.328 65.000 2.73 2.73 39.35 3.34
2951 3014 1.957765 GCGAAGGTGGGAGGAGGTAC 61.958 65.000 0.00 0.00 0.00 3.34
2952 3015 1.684734 GCGAAGGTGGGAGGAGGTA 60.685 63.158 0.00 0.00 0.00 3.08
2953 3016 3.003763 GCGAAGGTGGGAGGAGGT 61.004 66.667 0.00 0.00 0.00 3.85
2954 3017 2.685380 AGCGAAGGTGGGAGGAGG 60.685 66.667 0.00 0.00 36.17 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.