>input_sequence_63599
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---------------------------------------------------ATGGAGAGCGTGGAGGGAAACGGCGCCGG
CCGCGGGAACCTGCAGCTTGTGGTGTCGGAGCTGTGCCGCGTCCAGGAGCTGGTGCGGCAGCTGGAGCTGCACCTACACG
CGCCGGACGCCTCCATCGACCTGTGCCGCGCCCTCACCGCCGAGATCTTCGCGCTCACCGACCGGTCCATCGGCTTCGTC
GCCGCCGCACATTTCCCCGACGCCCCGACGACGCCCTCCAGCACGTCCAGCTCCCTCAGCGGCGTCTCCGACCAGCCCTT
CAGGACCAACACCAAGAAGAGGTAAAAACAAAGCCC-------------ATGCTCGAACAGAGCACCATTGGAA-----T
TGGATCATCCAAAATGCACCGAATTGTTGTTGAATTCTTGGTGTCTCG----TGGTTCTTGGCAGGAAGGCGACGACGAG
GTGGACGAGCCAGGTGAGGGTGAGTGCGGCCGGCGGCGCGGAGTGGCCCGGCGACGACGGCCACAGCTGGAGGAAGTACG
GGCAGAAGGACATCCTCGGCGCCAGGCACCCGAGGGCCTACTACCGCTGCACCCACCGCAACTCGCAGGGCTGCCCCGCC
ACCAAGCAGGTGCAGCGCGCCGACCAGGACCCCGCGCTCTTCGACATCGTCTACCACGGCCAGCACACCTGCAGGCCAGG
CGGCGGCGGCGGCGGGAGGAGGCCGCCGACGAACCACCACAACCCGCACGCGGAGAGCCTGCTGCAGAGCCTCAGAGCCG
GCCTGACCGTGGACGCGGACCACGGCGCCCTGAACAACACCTCAGTCTCACCGCCGTCGATGGCCTCGCCTGTGGAGTCC
GGCTCCAACGGTGGCCTGACCATGTCACCGTACCCGGTGCCGGCCGGCGCGTACACGGAGTGGCCGCTGGACGGCGACCT
CCAGGAGGTGGTGTCGGCGCTCACAGCCGTGTCGGCCCCGAGCATGGACTGCCTTTTCGAGTTCGACCCGACCTTCGGCC
TTGGTGCGCCCAACTTCTTCATGTGA------------------------------------------------------
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>chr2A_1_TraesCS2A01G161500
GCTCTTCCTAAGATGTAGATATAAATAGTTTTCTCCATAAATTTGATCAATATTTGCAAAGTTTGACTTTAAAAAAAATA
TCTATATCTATGGGCACTACAATATGGAAAGAAAGGAGTACGAGGACACAACATAGTTGCCAGCTTGTGTTTACATAAGC
ACACCCGGTCTTTTTACATAAGTACAACATGGGAAGGTTCACTCGGTATTAACCCTTAATTTTTGTAAAAGAAGTGAATC
AACCTGTGGTTGGATGGTTATGATATCCCGGTCCACCAGGTTCAAGTCCTATACTCCCTTCGTCGGAAATACTTGTCCTA
AAAATCAATGTACCTAGACCTATTTTAATTATAGATACATCCATTTTATCCATTTCTAAGACAAATATTTTCGGACGGAG
GGAGTATTTGATATTGATGCTTGCATTATCCCTGGATTTATTTTAGGTTTTTGACGATGTTCGTTCAGTGGGAGCAGACG
TTCCCGTCGACCGCGAAGCTCCTGTGCTGACTTCATAAAATCTCAAAATGTTATGCCGGCCTCCGGA----GATGTGCTC
ATAGAGATAGGATGTGCGTGCATGCATTTATCTA----TATGCTTGTGTATGTAAGCAAATTCGATTATACTATATTTAA
AAAAACTGTCAAAAAGAAAAAAAATAAAAGCCATCCATTTGACCATCTAAACATTTGGGCATACACCCCCGATAGAAAGT
GTTTAATTCACGGGCAAAACGGCCCGCAGCTGCAAAACCCTACCCGTACCCGGCAAGGCAGCAACCAAT---CAAGTGGC
AGTCCAAACAATCCCCATCCAGTCAAACAAATCCCCTCCACCTCACTTGACTTGAACCCTGCCGCTATAAGATGGCTCGT
CTCCCCGCCTCTCACCAGTCACCACCACCGCCTCCTCTCCTGCACCTCGCGATCGAGAGATATCGCCGATCACTTCCTCG
CTTCCTTCCTTCTCCTCCGCCGATCGAACGTGTTCTTCCGTGTCCGCGGCAATGGAGAGCGTGGAGGGAAACGGCGCCGG
CCGCGGGAACCTGCAGCTTGTGGTGTCGGAGCTGTGCCGCGTCCAGGAGCTGGTGCGGCAGCTGGAGCTGCACCTACACG
CGCCGGACGCCTCCATCGACCTGTGCCGCGCCCTCACCGCCGAGATCTTCGCGCTCACCGACCGGTCCATCGGCTTCGTC
GCCGCCGCACATTTCCCCGACGCCCCGACGACGCCCTCCAGCACGTCCAGCTCCCTCAGCGGCGTCTCCGACCAGCCCTT
CAGGACCAACACCAAGAAGAGGTAAAAACAAAGCCC-------------ATGCTCGAACAGAGCACCATTGGAA-----T
TGGATCATCCAAAATGCACCGAATTGTTGTTGAATTCTTGGTGTCTCG----TGGTTCTTGGCAGGAAGGCGACGACGAG
GTGGACGAGCCAGGTGAGGGTGAGTGCGGCCGGCGGCGCGGAGTGGCCCGGCGACGACGGCCACAGCTGGAGGAAGTACG
GGCAGAAGGACATCCTCGGCGCCAGGCACCCGAGGGCCTACTACCGCTGCACCCACCGCAACTCGCAGGGCTGCCCCGCC
ACCAAGCAGGTGCAGCGCGCCGACCAGGACCCCGCGCTCTTCGACATCGTCTACCACGGCCAGCACACCTGCAGGCCAGG
CGGCGGCGGCGGCGGGAGGAGGCCGCCGACGAACCACCACAACCCGCACGCGGAGAGCCTGCTGCAGAGCCTCAGAGCCG
GCCTGACCGTGGACGCGGACCACGGCGCCCTGAACAACACCTCAGTCTCACCGCCGTCGATGGCCTCGCCTGTGGAGTCC
GGCTCCAACGGTGGCCTGACCATGTCACCGTACCCGGTGCCGGCCGGCGCGTACACGGAGTGGCCGCTGGACGGCGACCT
CCAGGAGGTGGTGTCGGCGCTCACAGCCGTGTCGGCCCCGAGCATGGACTGCCTTTTCGAGTTCGACCCGACCTTCGGCC
TTGGTGCGCCCAACTTCTTCATGTGAGGACGACGAACAG-------AGCATCGAAGTGGAATTATATGACACTACCCAGC
CCCTGCCTGTCCTTGGTAAGAGGGTAGAAGAACAGAGCA---TCAAAGTGCAGATTTAGGCACTAGGCAGAAAGCCTTAG
GATATCTGAATAGTTATTTCTTTTCTTCTACTACAGTTTTGATTGGTTAGGTTCTGTTGATTTATTTTGTAAGGAAAGCA
GAAAAAAATAAGGTGTTGAAATTCATCTTCTCCTGAATCCATGAACTGTATCCTGGAACTGTCCTTTAAAGCCCGCTATG
-TCTATGGACATTGGAGGAGTGTTCCTTTGTTGTGAAGGAAGTATCTGCTCCTTTTGTCAAGAA-CTTTTTTCTCTCGTA
GAATCAAGTGTTCTGAGACTGGCAAGAAGAAACGTTGGAGCACATCAAATATAAACAGAGTGAGAAACACGTCCGGTTTC
ATGTT------GTCAGACACTACTGTGAGAAAACAAGATGCACA-TTTGGAGGTCTCAATAAAGAAGCAAACTTCCAGAA
ATGCATTACCACAACAACTAGTGGTTACAATGACAGTCGCCAAAGTCCTAATCTGAGCTCGAGCTCAAATGTTCTTGACA
TGAACAGTAAAAATAGAAAAAAAATCAA----AAACAATTCAAAAATTTCTGATTTTTCTTTTGGCAAACAATAAGAATT
TTTTTCAGGTGCTCAAATTTTCTCATCATGGAAACACATTTGTGGAAGTCATGGCAAAAAG-ATAAAATCAGCTCCCCAA
AATGCTTCTGAAAGTAGCATCTTCGA---ATCATCATTTTTTTGCCACGACTTCCACAAATGTAATTCCATGATGAAACT
TTGCAAGCACTAATT--TTTTTAATGTTTTCCAAAAAGAAAATCAGAATTTTTTTCTTCATCTCTACTCCTAATGGAGCA
GTTGATAGTCTCGCTTTCAGGTTTTTTTTGTCCCACCTTCTATGGTTTTTTTGGTACCTCCTCCCACCTTCGCTGATTTT
TTTCGTAGGTTATTT
>chr2D_408
TTGAC---------------------------------------------------------------------------
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------------ATTGGTGCTCACATTATTTCTGAATTTATTTTAGGTTTCCGGTGATGTTCGTTCAGTGGGAGGAGACG
TCGACTGCGAGGCG------CCTATGGTGACTTCGTAAAATCTGAATATGTTATGCCGGCTCAGTCTCTCGGAGGTGTTC
ATAGGTGTAGGATTGGTGTGTGTTCATAAGAATGAGTGTATGCTCGTATATGTAAGCGACTTCGATTATACTATGTTAAA
AATAATCAAAGAAAAG--AAAAAGTAAAAGCCATCCATTTGGCCATCTAAATATTTGGGCATACACCCCCTATAGAAAGT
GTTTAATTCACGGGCAAAACGGCCCGCAGCTGCAAAACCCTACCCGTACCCGGCAAGGCAGCAGCCAAT---CAAATGGC
AGTCCAAAAAATCCCCATCCAGTCAAACAAATCCCCTCCACCTCACTTCACTTGAACTCCGCCTCTATAAGATGGCTCGT
CTCCCCGCCTCTCACCACCAGT--CCACCACCTCCTCTCCTGCACCTCGCGATCGAGAGATATCGCTGATCACTTGCTCG
CTTCCTTCCTTCTCCTCCGCCAATCGAACGTGTTCTTCCGTGTCCGCGGCAATGGAGAGCGTGGAGGGGAACGGCACCGG
CCGCGGGAACCTGCAGCTTGTGGTGTCGGAACTGTGCCGAGTCCAGGAGCTGGTCCGGCAGCTGGAGCTGCACCTACACG
CACCGGACGCCTCCATCGACCTGTGCCGCGCCCTCACCGCCGAGATCTTCGCGCTCACCGACCGGTCCATCGGCTTCGTC
GCCGCCGCACATTTCCCCGACGCCCCGACCACGCCCTCCAGCACCTCCAGCTCCCTCAGCGGCGTCTCCGACCAGCCCTT
CAGGACCAACACCAAGAAGAGGTAAAAAGAAAGACCCAACTCAACTCAAATGCTCGAACAGAGCACAATTGGAA-----T
TGGATCATCCAAA-TGCGCCGAACTGCTGTTGAATTCTTGGCGCTTCG----TGGTTCTTGGCAGGAAGGCGACGGCGAG
GTGGACGAGCCAGGTGAGGGTGAGTGCGGCCGGCGGCGCGGAGGGGCCTGGCGACGACGGCCACAGCTGGAGGAAGTACG
GGCAGAAGGACATCCTCGGCGCCAAGCACCCGAGGGCCTACTACCGCTGCACCCACCGCAACTCGCAGGCCTGCCCCGCC
ACCAAGCAGGTGCAGCGCGCCGACCAGGACCCCGCGCTCTTCGACGTCGTCTACCACGGCCAGCACACCTGCAGGCCAAC
G---------GGCGGTAGGAGGCCGCCGACGAACCAACACAACCCGCACGCGGAGAGCCTGCTGCAGAGCCTCAGAGCCG
GCCTGACCGTGGACGCGGAGCACGGCGCCCTGAACAACACCTCAGTCTCACCGCCGTCGATGGCCTCGCCTGTGGCGTCT
GGCTCCAACGGTGGTCTGGCCATGTCGCCGTACCCGGTGCCAGCCGGCGCGTACGCGGAGTGGCCGCTGGACGGCGACCT
CCAGGAGGTGGTGTCGGCGCTCACAGCCGTGTCAGCCCCGAGCATGGACTGCCTTTTCGAGTTCGACCCGACCTTCGGCG
TTGGTGTGCCGAACTTCTTCATGTGAGGACGACGAACAG-------AGCATCGAAGTGCAATTG--TGACACTACCCAGC
CCCTGCCTATCCTTGGCAAGAGGG---AAGAACAGAGCATCTTCAAAGTGCAGATTTAGGCACTAGGCAAAAAGCCTTAG
GATATCTGAATAGTTATTTCTTTTCTTCTA---CAGTTTTGATTGGTTAGGTTTTGTTGATTTATTTTGTAAGAAAGCGG
AGAAAAAATAAGGTGTTGAAATTCATGTTCTCCTGAATCCATGAACCGTATCGTGGAACTGTCCTTTAAAGCCCGCTATG
-TCTATGGACATTGGAGGAGTGTTCCTTTGTTGTGAAGGAAATATCTGCTCCTTTTGTCAAGAA-CTTTTTTCTCTCGTA
GAATCAAATGTTCTGAGACTGATAAGAAGAAACGTTGGAGCACATCAAATATAAACAGAGTGAGAAACACGTCCGGTTTC
ATGCTGTCAGAGTCAGACACTATTGTGAGAAAAGAAGATACACATTTTGGAGGTCTCAATAAAGAAGCAAACTTCCATAA
ATGCATTACCACAACAACTAGTGGTTACAATGACAGACACCAAAGTCCTAATCTGAGATCGAGCTCAAATGCTCTTGTCA
TGAACAGTAAAAAATAAGAAAAATAAATAAATAAACAATTCAAAAATTTCTGATTTTTCTTTTGGCAAAAAATAAGAAAA
-TTTTCAGGTGCTTAAAATTTTTCATCATGGAAACACATTTGTGGAAGTCGTGGCAAAAAGGATAAACTCAGCTCCCCAA
AATGCTTCTGAAAGTAGCACCTCTGGATCATCATTTTTTTCTTGCCATGACTTCCACAAATGTGATCCCATGATGAAACT
TTGCAAGCACTAATTATTTTTTAATGTTTTCCAAAAAGAAAATCAGAACTTTTT--------------------------
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>chr2B_721
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--------CACGGGCAAAACGGCCTGCAGCTGCAAAACCCTACCCGTACCCGGCAAGGCAGCAACCAATCACCAAATGGC
AGTCCAAACAATCCCCATCCAGTCAAACAAATCCCCTCCACCTCACTTGACTTGAACTCTGCCTCTATAAGATGTCTCGT
CTCCCCGCCTCACACCACC-------ACCACCTGCTCTCCTGCACCTCGCGATCGAGAGATATCGCCGATCA--------
CTTCCTTCCTTCTCCTCCGCCGATCGAACGTGTTCTTCCGTGTCCGCGGCAATGGAGAGCGTGGAGGGGAACGGCACCGG
CCGCGGGAACCTGCAGCTTGTGGTGTCGGAACTGTGCCGCGTCCAGGAGCTGGTGCGGCAGCTCGAGCTGCACCTGCACG
CGCCGGACGCCTCCATCGACCTGTGCCGCGCCCTCACCGCCGAGATCTTCGCGCTCACCGACAGGTCCATCGGCTTCGTC
G---CCGCACATTTCCCCGACGCCCCGACCACGCCCTCCAGCACGTCCAGCTCCCTCAGCGGCGTCTCCGACCAGCCCTT
CAGGACCAACACCAAGAAGAGGTAAAAAGAAAGGCCCAACTCAACTCAAATGCTCGAACAGAGCACCATTGGAATGGAAT
TGGATCATCCAAA-TGTGCCGAACTGTTGTTGAATTCTTGGCGCTTCGTCGATGGTTCTTTGCAGGAAGGCGACGGCGAG
GTGGACGAGCCAGGTGAGGGTGAGTGCGGCCGGCGGTGCGGAGGGGCCTGGCGACGACGGCCACAGCTGGAGGAAGTACG
GGCAGAAGGACATCCTCGGCGCCAAGCACCCGAGGGCGTACTACCGCTGCACCCACCGCAACTCGCAGGGCTGCCCCGCC
ACCAAGCAGGTGCAGCGCGCCGACCAGGACCCCGCGCTCTTCGACGTCGTCTACCACGGCCAGCACACCTGCAGGCCAAC
GGGCAGCGGCGGCGGCAGGAGGCCGCCGACGAACCAACACAACCCGCACGCGGAGAGCCTGCTGCAGAGCCTCAGAGCCG
GCCTGACCGTGGACGCGGACCACGGCGGCCCGAACGCCAGTGTCT------CACCGTTGGGGGCGTCGCCTGTGGCGTCT
GGCTCCAACGGTGGTCTGACCATGTCGCCGTACCCGGTGCCAGCCGGCGCGTACACGGAGTGGCCGCTGGACGGCGACCT
CCAGGAGGTGGTGTCGGCGCTCACAGCCGTGTCGGCCCCGAGCATGGACTGCCTTTTCGAGTTCGACCCGACCTTCGGCG
ATGGTGTGCCCAACTTCTTCATGTGAGGACGACCAACAGTCAACAGAGCATCGAAGTGGAATTATATGACACTACCCAGC
CCCTGCCTGTCCTTGTAAGAGG----GAAGAACAGAGCA---CCAAAGTGCAGATTTAGGAACTAAGCAGAAAGCCTTAG
GATATCTGAATAGTTATTTCTTTTCTTCTA---CATTTTTGATTGGTTAGGTTTTGTTGATTTATTTTGTAAGGAAA-CA
GAAAAAAATAAGGTGTTGAAATTCATGTTCTCCTGAATCCATGAACTGTATCCTGGAACTGTCCTTTAAAGCTTATACTT
ATCTTTGGACATTGGAGAATTGGCCCTTT----TGAAGGAAGTATCCACTCCTTTTGTCAAGAACCTTTTTTCTCTCGTA
GAATCAAGCGTTCTGAGACTGGCTAGAAGAAACGTTGGAGCACATCAAATATAAACAGAGTGAGAACCACGTCCGGTTTC
ATGCTGTCAGAGTTGGACACTATTGTGAGAAAAGAAGATACACATTCTGGAGGTC--AATAAAGAAGCAAACTTCCAGAA
ATGCGTTACCACAACAACAAGTGGTTACAGTGACAGTCGCGAAAGTCCTAATCTGAGCTCGAGCTCAAATGCTCTTGGCA
TGATCAGTAAAAATAGGAAAAAAATAAA----AAGTAATTCAAAAATTTCTGATTTTTCTTTTGGCAAAGAATAAGAAA-
TTTTTCAGGTGCTTAAATTTTTTCAGCATGGAAACACATTTGTGGAAGTCATGGCAGAAAGGATAAAATCAGCTCCCCAA
AATGCTTCTGAAAGTAGCATCTTTGGATCATCATTTTTTT--TGCCACGACTTCCACAAATGTGATTCCATGATGAAACT
TTGCAAGCACTA---ATTTTTTAATGTTCTTCAAAAAGAAAATCAGACCTTTTT--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS----S----SS------SS---S---------------SS-SS-------------------S-----
-SSS-SS---SSSSSSSSSS---S--S-------S--------S--S-------------SSSSSSS------S---S--
----SSS------SS-S---SS-S---SSSSS-S----------S--S---------S-S--------------S--S--
--S--SSSSSS-----SS-----S-----------------S---------S------------------S---------
---------------------------------------------------------------------------S----
---------------------------------------------------------S-----S----------------
-----------------SSSSSSS-----S---------------------------------------------S----
--------------------------------------------------------------------S------S----
------------------------------S-------------------------------------------------
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-----------------------------S--------------------------------------------------
----------------------------S----S----------------------------------------------
-------------S---S-----S-----------------S-SS------------------------------S----
-------------------------------------------S----S-------------------------------
------------------------S-------------------------------------------------------
---------------------------------------------S--------------------------------SS
S---S----------S--------------------S-------------------------------------------
---------------------------------------------------------------------------S---S
--------------S-----------S--------------S--------------------------------------
-------------------------------------------------------------------------------S
------S-------------------------------------------------------------------------
----------------S-------SS------------------------------------------------------
------------------------------SSS--------------------S-----------------------S--
--------------------------S-----------------------------------------------------
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---S------------------S----------S-----S----------------------------------------
-----------------------------------------------------------------------S-----S--
-------------------------S-------------------------------------------S--------SS
-------------S-------S----------------------------------------------------------
-----------------------S-S--------SS----S----------------------S----------------
------------------------------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_483
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---------------------------------------------------------------TTCAGTGGGAGCAGACG
TTC-----------------------------------------------------------------------------
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>reverse_1855
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--------------CCTGACCATGTCACCGTACC----------------------------------------------
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>forward_864
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--------------------------------------------ACTTGACTTGAACCCTGCCG----------------
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>reverse_2841
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----------------------------------------TTTGCCACGACTTCCACAAA--------------------
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