Multiple sequence alignment - TraesCS2A01G157800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G157800 chr2A 100.000 4119 0 0 1 4119 104867655 104871773 0.000000e+00 7607.0
1 TraesCS2A01G157800 chr2A 90.244 164 13 2 2401 2563 249754620 249754459 1.160000e-50 211.0
2 TraesCS2A01G157800 chr2D 91.667 2076 86 36 378 2403 108919817 108921855 0.000000e+00 2795.0
3 TraesCS2A01G157800 chr2D 94.048 756 39 2 3361 4116 108922628 108923377 0.000000e+00 1142.0
4 TraesCS2A01G157800 chr2D 92.857 784 31 5 2560 3328 108921856 108922629 0.000000e+00 1114.0
5 TraesCS2A01G157800 chr2B 93.232 1581 84 7 2560 4119 158618424 158620002 0.000000e+00 2305.0
6 TraesCS2A01G157800 chr2B 86.961 2155 141 64 313 2406 158616333 158618408 0.000000e+00 2294.0
7 TraesCS2A01G157800 chr2B 93.035 201 14 0 38 238 158616029 158616229 1.120000e-75 294.0
8 TraesCS2A01G157800 chr2B 89.759 166 14 2 2399 2563 585712657 585712494 4.170000e-50 209.0
9 TraesCS2A01G157800 chr2B 88.506 174 17 2 2391 2563 76912128 76912299 1.500000e-49 207.0
10 TraesCS2A01G157800 chr2B 78.547 289 40 12 33 312 798289800 798290075 1.970000e-38 171.0
11 TraesCS2A01G157800 chr2B 100.000 34 0 0 1 34 158615969 158616002 3.440000e-06 63.9
12 TraesCS2A01G157800 chr5B 83.154 279 38 6 42 316 575779155 575778882 3.180000e-61 246.0
13 TraesCS2A01G157800 chr5D 91.018 167 12 3 2398 2563 461072599 461072763 5.360000e-54 222.0
14 TraesCS2A01G157800 chr5A 81.786 280 34 7 42 316 589219023 589218756 6.930000e-53 219.0
15 TraesCS2A01G157800 chr5A 77.855 289 42 11 42 316 603528434 603528154 4.260000e-35 159.0
16 TraesCS2A01G157800 chr3A 90.419 167 12 3 2398 2563 726768965 726769128 2.490000e-52 217.0
17 TraesCS2A01G157800 chr3B 89.941 169 14 2 2396 2563 519860079 519860245 8.970000e-52 215.0
18 TraesCS2A01G157800 chr7D 89.412 170 15 2 2395 2563 566026742 566026575 1.160000e-50 211.0
19 TraesCS2A01G157800 chr4B 89.759 166 14 2 2399 2563 28724141 28724304 4.170000e-50 209.0
20 TraesCS2A01G157800 chr4A 88.506 174 17 2 2391 2563 150653303 150653474 1.500000e-49 207.0
21 TraesCS2A01G157800 chr4D 80.505 277 36 12 42 316 37521044 37520784 3.250000e-46 196.0
22 TraesCS2A01G157800 chr4D 82.464 211 34 3 42 252 22592785 22592992 9.100000e-42 182.0
23 TraesCS2A01G157800 chr4D 76.856 229 30 18 99 316 93447822 93447606 1.570000e-19 108.0
24 TraesCS2A01G157800 chr1D 79.464 224 36 9 42 263 481929499 481929284 2.560000e-32 150.0
25 TraesCS2A01G157800 chr1A 78.855 227 38 9 42 267 578755932 578755715 1.190000e-30 145.0
26 TraesCS2A01G157800 chr7B 76.632 291 41 10 41 316 84488803 84488525 7.180000e-28 135.0
27 TraesCS2A01G157800 chr1B 81.065 169 23 6 98 263 670553003 670552841 4.320000e-25 126.0
28 TraesCS2A01G157800 chr6B 80.120 166 25 6 99 263 614304693 614304535 2.600000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G157800 chr2A 104867655 104871773 4118 False 7607.000000 7607 100.000000 1 4119 1 chr2A.!!$F1 4118
1 TraesCS2A01G157800 chr2D 108919817 108923377 3560 False 1683.666667 2795 92.857333 378 4116 3 chr2D.!!$F1 3738
2 TraesCS2A01G157800 chr2B 158615969 158620002 4033 False 1239.225000 2305 93.307000 1 4119 4 chr2B.!!$F3 4118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 1052 0.038159 GTGTGGAGGAACTGACGGAG 60.038 60.0 0.0 0.0 41.55 4.63 F
1397 1513 0.107410 TTCGGTGTGGCTTCTTGTGT 60.107 50.0 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2860 2986 0.392193 CGGGATGCAGAGAAAGTGCT 60.392 55.0 0.00 0.0 41.78 4.40 R
3387 3534 0.966920 ACAAGGTCGGACTGTCGATT 59.033 50.0 8.23 0.0 41.40 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.254892 GAGTTTCTTAGCTCGGGTTCAG 58.745 50.000 0.00 0.00 0.00 3.02
35 36 2.633481 AGTTTCTTAGCTCGGGTTCAGT 59.367 45.455 0.00 0.00 0.00 3.41
36 37 3.830755 AGTTTCTTAGCTCGGGTTCAGTA 59.169 43.478 0.00 0.00 0.00 2.74
40 64 5.217978 TCTTAGCTCGGGTTCAGTAAAAA 57.782 39.130 0.00 0.00 0.00 1.94
96 120 5.182001 AGCTTTATCATGGAATTACATCCGC 59.818 40.000 0.00 0.00 42.76 5.54
98 122 1.877637 TCATGGAATTACATCCGCGG 58.122 50.000 22.12 22.12 42.76 6.46
143 167 3.758755 TTGATGCTCCGAAGATGCTAT 57.241 42.857 0.00 0.00 0.00 2.97
147 171 4.512944 TGATGCTCCGAAGATGCTATTTTC 59.487 41.667 0.00 0.00 0.00 2.29
238 262 3.435105 TTTGCAAGCACTCGAAACATT 57.565 38.095 0.00 0.00 0.00 2.71
239 263 3.435105 TTGCAAGCACTCGAAACATTT 57.565 38.095 0.00 0.00 0.00 2.32
240 264 4.560136 TTGCAAGCACTCGAAACATTTA 57.440 36.364 0.00 0.00 0.00 1.40
241 265 4.764679 TGCAAGCACTCGAAACATTTAT 57.235 36.364 0.00 0.00 0.00 1.40
242 266 5.119931 TGCAAGCACTCGAAACATTTATT 57.880 34.783 0.00 0.00 0.00 1.40
243 267 4.916831 TGCAAGCACTCGAAACATTTATTG 59.083 37.500 0.00 0.00 0.00 1.90
244 268 5.153513 GCAAGCACTCGAAACATTTATTGA 58.846 37.500 0.00 0.00 0.00 2.57
247 271 6.500684 AGCACTCGAAACATTTATTGATGT 57.499 33.333 0.00 0.00 41.83 3.06
256 280 5.480642 ACATTTATTGATGTTTGCCCACA 57.519 34.783 0.00 0.00 36.92 4.17
258 282 6.294473 ACATTTATTGATGTTTGCCCACAAA 58.706 32.000 0.00 0.00 43.45 2.83
259 283 6.769822 ACATTTATTGATGTTTGCCCACAAAA 59.230 30.769 0.00 0.00 46.94 2.44
305 362 6.647334 TTGATTTTACTGTTCATGCCAAGA 57.353 33.333 0.00 0.00 0.00 3.02
306 363 6.258230 TGATTTTACTGTTCATGCCAAGAG 57.742 37.500 0.00 0.00 0.00 2.85
317 374 1.878775 GCCAAGAGCATTTGAGCGT 59.121 52.632 2.15 0.00 42.97 5.07
330 387 5.294552 GCATTTGAGCGTAGATTAGGACTTT 59.705 40.000 0.00 0.00 0.00 2.66
348 408 7.097834 AGGACTTTCGTAGTAATTCCTTTCTG 58.902 38.462 0.00 0.00 37.17 3.02
349 409 6.872547 GGACTTTCGTAGTAATTCCTTTCTGT 59.127 38.462 0.00 0.00 37.17 3.41
350 410 7.387122 GGACTTTCGTAGTAATTCCTTTCTGTT 59.613 37.037 0.00 0.00 37.17 3.16
351 411 8.672823 ACTTTCGTAGTAATTCCTTTCTGTTT 57.327 30.769 0.00 0.00 34.56 2.83
352 412 9.117183 ACTTTCGTAGTAATTCCTTTCTGTTTT 57.883 29.630 0.00 0.00 34.56 2.43
353 413 9.595357 CTTTCGTAGTAATTCCTTTCTGTTTTC 57.405 33.333 0.00 0.00 0.00 2.29
354 414 8.897872 TTCGTAGTAATTCCTTTCTGTTTTCT 57.102 30.769 0.00 0.00 0.00 2.52
357 417 9.595357 CGTAGTAATTCCTTTCTGTTTTCTTTC 57.405 33.333 0.00 0.00 0.00 2.62
368 429 8.905103 TTTCTGTTTTCTTTCTTTAACCTTCG 57.095 30.769 0.00 0.00 0.00 3.79
385 446 6.535274 ACCTTCGGTATATAAAATTCGCAC 57.465 37.500 0.00 0.00 32.11 5.34
463 524 0.938168 GACCGGATAAACTAGGCGCG 60.938 60.000 9.46 0.00 0.00 6.86
633 694 2.455565 CCCCATCGCCATCCTCCTT 61.456 63.158 0.00 0.00 0.00 3.36
781 842 3.756783 CTCCCCGTCTCTCCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
784 845 2.364961 CCCGTCTCTCCCCCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
793 856 3.711782 CCCCCTCTTCCTCCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
837 900 1.473278 GGAGAACCACAGGTAGACGAG 59.527 57.143 0.00 0.00 33.12 4.18
838 901 0.889306 AGAACCACAGGTAGACGAGC 59.111 55.000 0.00 0.00 33.12 5.03
899 983 3.159353 TGGAGGTAATCGTCGTGATTG 57.841 47.619 13.45 0.00 46.72 2.67
902 986 3.982058 GGAGGTAATCGTCGTGATTGATC 59.018 47.826 13.45 9.24 46.72 2.92
903 987 3.629058 AGGTAATCGTCGTGATTGATCG 58.371 45.455 13.45 0.00 46.72 3.69
905 989 3.795101 GGTAATCGTCGTGATTGATCGTT 59.205 43.478 13.45 0.00 46.72 3.85
910 1014 2.505866 GTCGTGATTGATCGTTTTGGC 58.494 47.619 0.00 0.00 0.00 4.52
939 1048 1.668151 GCCGTGTGGAGGAACTGAC 60.668 63.158 0.00 0.00 41.55 3.51
943 1052 0.038159 GTGTGGAGGAACTGACGGAG 60.038 60.000 0.00 0.00 41.55 4.63
944 1053 1.079750 GTGGAGGAACTGACGGAGC 60.080 63.158 0.00 0.00 41.55 4.70
945 1054 1.228894 TGGAGGAACTGACGGAGCT 60.229 57.895 0.00 0.00 41.55 4.09
946 1055 1.251527 TGGAGGAACTGACGGAGCTC 61.252 60.000 4.71 4.71 41.55 4.09
947 1056 1.137825 GAGGAACTGACGGAGCTCG 59.862 63.158 7.83 5.83 41.55 5.03
962 1071 2.316119 GCTCGTGCTTGGTTTTACAG 57.684 50.000 1.41 0.00 36.03 2.74
963 1072 1.602377 GCTCGTGCTTGGTTTTACAGT 59.398 47.619 1.41 0.00 36.03 3.55
965 1074 1.862201 TCGTGCTTGGTTTTACAGTCG 59.138 47.619 0.00 0.00 0.00 4.18
966 1075 1.659211 CGTGCTTGGTTTTACAGTCGC 60.659 52.381 0.00 0.00 0.00 5.19
967 1076 1.332375 GTGCTTGGTTTTACAGTCGCA 59.668 47.619 0.00 0.00 0.00 5.10
970 1079 1.535462 CTTGGTTTTACAGTCGCAGGG 59.465 52.381 0.00 0.00 0.00 4.45
991 1101 1.108132 AGGTACCGGATCGAGCTTCC 61.108 60.000 9.46 0.00 0.00 3.46
1073 1183 1.073284 GTGAGTTCTGGGGCCTGTAAA 59.927 52.381 0.84 0.00 0.00 2.01
1076 1186 3.181423 TGAGTTCTGGGGCCTGTAAATTT 60.181 43.478 0.84 0.00 0.00 1.82
1357 1472 4.806892 AGCATCCATTCCATTGGTAATCA 58.193 39.130 1.86 0.00 38.01 2.57
1358 1473 4.586001 AGCATCCATTCCATTGGTAATCAC 59.414 41.667 1.86 0.00 38.01 3.06
1364 1479 0.738389 CCATTGGTAATCACGTGGCC 59.262 55.000 17.00 13.19 0.00 5.36
1366 1481 1.373590 ATTGGTAATCACGTGGCCGC 61.374 55.000 17.00 6.11 37.70 6.53
1393 1509 3.418684 AGTAATTCGGTGTGGCTTCTT 57.581 42.857 0.00 0.00 0.00 2.52
1397 1513 0.107410 TTCGGTGTGGCTTCTTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
1411 1527 5.504010 GCTTCTTGTGTTTCTGATTTCGTGA 60.504 40.000 0.00 0.00 0.00 4.35
1423 1539 6.602179 TCTGATTTCGTGAGCTACAAATTTG 58.398 36.000 16.67 16.67 0.00 2.32
1437 1554 6.237648 GCTACAAATTTGATGTGTGCAATAGC 60.238 38.462 24.64 17.02 34.22 2.97
1446 1563 2.264480 TGCAATAGCGCTCACCGT 59.736 55.556 16.34 0.00 46.23 4.83
1447 1564 2.100031 TGCAATAGCGCTCACCGTG 61.100 57.895 16.34 7.29 46.23 4.94
1448 1565 2.813179 GCAATAGCGCTCACCGTGG 61.813 63.158 16.34 0.00 39.71 4.94
1449 1566 1.447838 CAATAGCGCTCACCGTGGT 60.448 57.895 16.34 0.00 39.71 4.16
1468 1585 2.092429 GGTTGGTGCCTTATGATCCTGA 60.092 50.000 0.00 0.00 0.00 3.86
1513 1630 2.030274 ACCACCGCAAAGATAAAACTGC 60.030 45.455 0.00 0.00 0.00 4.40
1531 1648 3.131396 CTGCCCCGTACAATTCTGATAC 58.869 50.000 0.00 0.00 0.00 2.24
1542 1660 4.287067 ACAATTCTGATACCACCTGACTGT 59.713 41.667 0.00 0.00 0.00 3.55
1543 1661 3.961480 TTCTGATACCACCTGACTGTG 57.039 47.619 0.00 0.00 35.98 3.66
1564 1682 5.593909 TGTGTTCTTCCACTGATGTTTGAAT 59.406 36.000 0.00 0.00 36.30 2.57
1966 2091 6.563422 TCACTATGCAAGGCAAATTTACATC 58.437 36.000 0.00 0.00 43.62 3.06
1984 2109 8.593492 TTTACATCTGAGTGCATATATGTCAC 57.407 34.615 22.30 22.30 36.08 3.67
1988 2113 4.580580 TCTGAGTGCATATATGTCACGACT 59.419 41.667 22.93 14.30 38.73 4.18
2213 2339 5.498393 AGCACACTGAAGAATGAATCTCAT 58.502 37.500 0.00 0.00 39.09 2.90
2347 2473 4.733988 AGAATAGGAAACCAATCCCATCCT 59.266 41.667 0.00 0.00 42.89 3.24
2408 2534 9.886132 TTATGAACAAATAAGAACTACTCCCTC 57.114 33.333 0.00 0.00 0.00 4.30
2410 2536 7.386851 TGAACAAATAAGAACTACTCCCTCTG 58.613 38.462 0.00 0.00 0.00 3.35
2411 2537 6.936968 ACAAATAAGAACTACTCCCTCTGT 57.063 37.500 0.00 0.00 0.00 3.41
2413 2539 7.387643 ACAAATAAGAACTACTCCCTCTGTTC 58.612 38.462 0.00 0.00 39.06 3.18
2414 2540 6.547930 AATAAGAACTACTCCCTCTGTTCC 57.452 41.667 0.00 0.00 39.45 3.62
2415 2541 3.837399 AGAACTACTCCCTCTGTTCCT 57.163 47.619 0.00 0.00 39.45 3.36
2416 2542 4.949966 AGAACTACTCCCTCTGTTCCTA 57.050 45.455 0.00 0.00 39.45 2.94
2417 2543 5.272405 AGAACTACTCCCTCTGTTCCTAA 57.728 43.478 0.00 0.00 39.45 2.69
2418 2544 5.652324 AGAACTACTCCCTCTGTTCCTAAA 58.348 41.667 0.00 0.00 39.45 1.85
2419 2545 6.265304 AGAACTACTCCCTCTGTTCCTAAAT 58.735 40.000 0.00 0.00 39.45 1.40
2421 2547 8.068733 AGAACTACTCCCTCTGTTCCTAAATAT 58.931 37.037 0.00 0.00 39.45 1.28
2422 2548 9.364653 GAACTACTCCCTCTGTTCCTAAATATA 57.635 37.037 0.00 0.00 34.47 0.86
2423 2549 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
2424 2550 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
2425 2551 7.068686 ACTCCCTCTGTTCCTAAATATAAGC 57.931 40.000 0.00 0.00 0.00 3.09
2426 2552 6.043358 ACTCCCTCTGTTCCTAAATATAAGCC 59.957 42.308 0.00 0.00 0.00 4.35
2427 2553 6.151049 TCCCTCTGTTCCTAAATATAAGCCT 58.849 40.000 0.00 0.00 0.00 4.58
2428 2554 6.619852 TCCCTCTGTTCCTAAATATAAGCCTT 59.380 38.462 0.00 0.00 0.00 4.35
2429 2555 7.128883 TCCCTCTGTTCCTAAATATAAGCCTTT 59.871 37.037 0.00 0.00 0.00 3.11
2430 2556 7.780271 CCCTCTGTTCCTAAATATAAGCCTTTT 59.220 37.037 0.00 0.00 0.00 2.27
2431 2557 9.190317 CCTCTGTTCCTAAATATAAGCCTTTTT 57.810 33.333 0.00 0.00 0.00 1.94
2444 2570 9.920946 ATATAAGCCTTTTTAGAGATTCCAACA 57.079 29.630 0.00 0.00 0.00 3.33
2445 2571 5.966742 AGCCTTTTTAGAGATTCCAACAC 57.033 39.130 0.00 0.00 0.00 3.32
2446 2572 4.455877 AGCCTTTTTAGAGATTCCAACACG 59.544 41.667 0.00 0.00 0.00 4.49
2447 2573 4.379499 GCCTTTTTAGAGATTCCAACACGG 60.379 45.833 0.00 0.00 0.00 4.94
2448 2574 5.001232 CCTTTTTAGAGATTCCAACACGGA 58.999 41.667 0.00 0.00 44.40 4.69
2449 2575 5.106673 CCTTTTTAGAGATTCCAACACGGAC 60.107 44.000 0.00 0.00 46.36 4.79
2450 2576 4.884668 TTTAGAGATTCCAACACGGACT 57.115 40.909 0.00 0.00 46.36 3.85
2451 2577 5.988310 TTTAGAGATTCCAACACGGACTA 57.012 39.130 0.00 0.00 46.36 2.59
2452 2578 6.540438 TTTAGAGATTCCAACACGGACTAT 57.460 37.500 0.00 0.00 46.36 2.12
2453 2579 4.392921 AGAGATTCCAACACGGACTATG 57.607 45.455 0.00 0.00 46.36 2.23
2454 2580 3.769844 AGAGATTCCAACACGGACTATGT 59.230 43.478 0.00 0.00 46.36 2.29
2455 2581 4.954202 AGAGATTCCAACACGGACTATGTA 59.046 41.667 0.00 0.00 46.36 2.29
2456 2582 5.598830 AGAGATTCCAACACGGACTATGTAT 59.401 40.000 0.00 0.00 46.36 2.29
2457 2583 6.776116 AGAGATTCCAACACGGACTATGTATA 59.224 38.462 0.00 0.00 46.36 1.47
2458 2584 6.746120 AGATTCCAACACGGACTATGTATAC 58.254 40.000 0.00 0.00 46.36 1.47
2459 2585 4.556942 TCCAACACGGACTATGTATACG 57.443 45.455 0.00 0.00 39.64 3.06
2460 2586 3.316029 TCCAACACGGACTATGTATACGG 59.684 47.826 0.00 0.00 39.64 4.02
2461 2587 3.316029 CCAACACGGACTATGTATACGGA 59.684 47.826 0.00 0.00 36.56 4.69
2462 2588 4.534168 CAACACGGACTATGTATACGGAG 58.466 47.826 0.00 0.49 0.00 4.63
2463 2589 2.551459 ACACGGACTATGTATACGGAGC 59.449 50.000 0.00 0.00 0.00 4.70
2464 2590 2.551032 CACGGACTATGTATACGGAGCA 59.449 50.000 0.00 0.00 0.00 4.26
2465 2591 3.004002 CACGGACTATGTATACGGAGCAA 59.996 47.826 0.00 0.00 0.00 3.91
2466 2592 3.633525 ACGGACTATGTATACGGAGCAAA 59.366 43.478 0.00 0.00 0.00 3.68
2467 2593 4.098349 ACGGACTATGTATACGGAGCAAAA 59.902 41.667 0.00 0.00 0.00 2.44
2468 2594 5.221382 ACGGACTATGTATACGGAGCAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
2469 2595 5.118664 CGGACTATGTATACGGAGCAAAATG 59.881 44.000 0.00 0.00 0.00 2.32
2470 2596 6.220930 GGACTATGTATACGGAGCAAAATGA 58.779 40.000 0.00 0.00 0.00 2.57
2471 2597 6.366332 GGACTATGTATACGGAGCAAAATGAG 59.634 42.308 0.00 0.00 0.00 2.90
2472 2598 6.817184 ACTATGTATACGGAGCAAAATGAGT 58.183 36.000 0.00 0.00 0.00 3.41
2473 2599 5.991328 ATGTATACGGAGCAAAATGAGTG 57.009 39.130 0.00 0.00 0.00 3.51
2474 2600 5.079689 TGTATACGGAGCAAAATGAGTGA 57.920 39.130 0.00 0.00 0.00 3.41
2475 2601 5.483811 TGTATACGGAGCAAAATGAGTGAA 58.516 37.500 0.00 0.00 0.00 3.18
2476 2602 6.112734 TGTATACGGAGCAAAATGAGTGAAT 58.887 36.000 0.00 0.00 0.00 2.57
2477 2603 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
2478 2604 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2479 2605 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2480 2606 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2481 2607 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2482 2608 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2496 2622 8.958506 AGTGAATCTACACTCTAAAATACGTCT 58.041 33.333 0.00 0.00 46.36 4.18
2539 2665 9.301897 AGTCTGTATTGAAATTCTAAAAAGGCT 57.698 29.630 0.00 0.00 0.00 4.58
2540 2666 9.914131 GTCTGTATTGAAATTCTAAAAAGGCTT 57.086 29.630 0.00 0.00 0.00 4.35
2558 2684 8.712228 AAAGGCTTATATTTAGAAATGGAGGG 57.288 34.615 0.00 0.00 0.00 4.30
2860 2986 0.603065 CACCAGTCATCACCTCGACA 59.397 55.000 0.00 0.00 34.48 4.35
2875 3001 1.001293 TCGACAGCACTTTCTCTGCAT 59.999 47.619 0.00 0.00 37.08 3.96
2878 3004 1.093159 CAGCACTTTCTCTGCATCCC 58.907 55.000 0.00 0.00 37.08 3.85
3001 3127 2.943033 GGGGATTTCCAATAGTGTGACG 59.057 50.000 0.00 0.00 37.91 4.35
3003 3129 2.354821 GGATTTCCAATAGTGTGACGCC 59.645 50.000 0.00 0.00 35.64 5.68
3148 3289 3.186119 CACAATTTGCTTCACCGTTTGT 58.814 40.909 0.00 0.00 0.00 2.83
3182 3323 2.609459 GTGTGAGTGGAGTGTGTTTCTG 59.391 50.000 0.00 0.00 0.00 3.02
3238 3379 4.223923 ACTCCAATCTGTCTCCGAATCTTT 59.776 41.667 0.00 0.00 0.00 2.52
3340 3487 3.486584 GCTCTTCAGCAAAAATCAGTCG 58.513 45.455 0.00 0.00 46.06 4.18
3353 3500 7.571026 CAAAAATCAGTCGAGATGATGATACC 58.429 38.462 12.53 0.00 37.46 2.73
3355 3502 3.477530 TCAGTCGAGATGATGATACCGT 58.522 45.455 0.00 0.00 0.00 4.83
3373 3520 2.143122 CGTTGTTAGTCACCTGTGCAT 58.857 47.619 0.00 0.00 0.00 3.96
3387 3534 7.223971 GTCACCTGTGCATAAGTATATTTTCGA 59.776 37.037 0.00 0.00 0.00 3.71
3399 3546 5.913514 AGTATATTTTCGAATCGACAGTCCG 59.086 40.000 4.25 0.00 34.89 4.79
3406 3553 0.966920 AATCGACAGTCCGACCTTGT 59.033 50.000 0.00 0.00 41.70 3.16
3412 3559 1.691976 ACAGTCCGACCTTGTGATCAA 59.308 47.619 0.00 0.00 0.00 2.57
3423 3570 1.164411 TGTGATCAATTGGTGGTCGC 58.836 50.000 5.42 6.63 46.40 5.19
3463 3610 8.696374 CAAGGTTAGATATCTTAGGAAGACACA 58.304 37.037 11.25 0.00 41.01 3.72
3497 3644 1.741770 CCCGCTTCTTTCCTGTCCG 60.742 63.158 0.00 0.00 0.00 4.79
3528 3675 1.002069 TGCCCTTGTGAATCCCTGAT 58.998 50.000 0.00 0.00 0.00 2.90
3558 3705 1.076777 CATCCCAACGGCCTTCCAT 60.077 57.895 0.00 0.00 0.00 3.41
3562 3709 2.179018 CAACGGCCTTCCATTGCG 59.821 61.111 0.00 0.00 28.03 4.85
3697 3844 2.918712 AAGTTCTCCATCCCATAGCG 57.081 50.000 0.00 0.00 0.00 4.26
3751 3898 2.546494 CGCTTCATCCAATCGCCCC 61.546 63.158 0.00 0.00 0.00 5.80
3796 3943 0.036388 AGCCATAGTGTTCGGTGTGG 60.036 55.000 0.00 0.00 0.00 4.17
3877 4024 0.248743 CGCCATGGCTACAAGCATTG 60.249 55.000 33.07 10.74 44.75 2.82
3917 4064 1.162698 CTCGTTAGGAGTGACACCGA 58.837 55.000 0.84 2.18 38.02 4.69
3928 4075 0.950555 TGACACCGACTTGCTGCATC 60.951 55.000 1.84 0.00 0.00 3.91
4048 4195 0.392193 AGACTGCAATCGCCTCCTTG 60.392 55.000 0.00 0.00 37.32 3.61
4111 4258 0.590195 GTGCAGTGTCAAGCTCAAGG 59.410 55.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 106 1.208535 ACTTCCGCGGATGTAATTCCA 59.791 47.619 36.93 16.54 35.34 3.53
115 139 7.229306 AGCATCTTCGGAGCATCAATTATTTTA 59.771 33.333 0.00 0.00 36.25 1.52
116 140 6.040166 AGCATCTTCGGAGCATCAATTATTTT 59.960 34.615 0.00 0.00 36.25 1.82
185 209 4.202050 GCATATCACATTTGTGGAAGTCCC 60.202 45.833 10.60 0.00 45.65 4.46
208 232 3.319755 AGTGCTTGCAAATTTTCATCGG 58.680 40.909 0.00 0.00 0.00 4.18
282 339 6.647334 TCTTGGCATGAACAGTAAAATCAA 57.353 33.333 0.00 0.00 0.00 2.57
283 340 5.335897 GCTCTTGGCATGAACAGTAAAATCA 60.336 40.000 0.00 0.00 41.35 2.57
286 343 4.503741 GCTCTTGGCATGAACAGTAAAA 57.496 40.909 0.00 0.00 41.35 1.52
300 357 2.621338 TCTACGCTCAAATGCTCTTGG 58.379 47.619 0.00 0.00 0.00 3.61
303 360 4.342378 TCCTAATCTACGCTCAAATGCTCT 59.658 41.667 0.00 0.00 0.00 4.09
305 362 4.100189 AGTCCTAATCTACGCTCAAATGCT 59.900 41.667 0.00 0.00 0.00 3.79
306 363 4.372656 AGTCCTAATCTACGCTCAAATGC 58.627 43.478 0.00 0.00 0.00 3.56
308 365 5.749109 CGAAAGTCCTAATCTACGCTCAAAT 59.251 40.000 0.00 0.00 0.00 2.32
309 366 5.100259 CGAAAGTCCTAATCTACGCTCAAA 58.900 41.667 0.00 0.00 0.00 2.69
310 367 4.157289 ACGAAAGTCCTAATCTACGCTCAA 59.843 41.667 0.00 0.00 44.19 3.02
311 368 3.693085 ACGAAAGTCCTAATCTACGCTCA 59.307 43.478 0.00 0.00 44.19 4.26
317 374 9.638176 AGGAATTACTACGAAAGTCCTAATCTA 57.362 33.333 3.19 0.00 46.57 1.98
330 387 8.897872 AAGAAAACAGAAAGGAATTACTACGA 57.102 30.769 0.00 0.00 0.00 3.43
368 429 5.640357 TGATCCCGTGCGAATTTTATATACC 59.360 40.000 0.00 0.00 0.00 2.73
447 508 1.663702 CCCGCGCCTAGTTTATCCG 60.664 63.158 0.00 0.00 0.00 4.18
563 624 3.782244 GCTGCTGCGTGGACTTCG 61.782 66.667 0.00 0.00 0.00 3.79
781 842 0.196118 AGGTGAAAGGGGGAGGAAGA 59.804 55.000 0.00 0.00 0.00 2.87
784 845 1.612442 CGAGGTGAAAGGGGGAGGA 60.612 63.158 0.00 0.00 0.00 3.71
793 856 0.456142 CGTGATCGCTCGAGGTGAAA 60.456 55.000 15.58 0.00 38.02 2.69
847 910 4.522975 GGGCCGAGGATTTGGGGG 62.523 72.222 0.00 0.00 0.00 5.40
848 911 2.911221 GAAGGGCCGAGGATTTGGGG 62.911 65.000 0.00 0.00 0.00 4.96
849 912 1.453928 GAAGGGCCGAGGATTTGGG 60.454 63.158 0.00 0.00 0.00 4.12
851 914 1.453928 GGGAAGGGCCGAGGATTTG 60.454 63.158 0.00 0.00 37.63 2.32
852 915 2.690734 GGGGAAGGGCCGAGGATTT 61.691 63.158 0.00 0.00 37.63 2.17
853 916 3.097162 GGGGAAGGGCCGAGGATT 61.097 66.667 0.00 0.00 37.63 3.01
860 942 3.662117 ATTGAAGCGGGGAAGGGCC 62.662 63.158 0.00 0.00 0.00 5.80
899 983 2.253414 GACCCAGCGCCAAAACGATC 62.253 60.000 2.29 0.00 34.06 3.69
902 986 4.383602 CGACCCAGCGCCAAAACG 62.384 66.667 2.29 1.03 0.00 3.60
903 987 4.038080 CCGACCCAGCGCCAAAAC 62.038 66.667 2.29 0.00 0.00 2.43
927 1036 1.228894 AGCTCCGTCAGTTCCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
928 1037 1.513622 GAGCTCCGTCAGTTCCTCC 59.486 63.158 0.87 0.00 0.00 4.30
943 1052 1.602377 ACTGTAAAACCAAGCACGAGC 59.398 47.619 0.00 0.00 42.56 5.03
944 1053 2.096909 CGACTGTAAAACCAAGCACGAG 60.097 50.000 0.00 0.00 0.00 4.18
945 1054 1.862201 CGACTGTAAAACCAAGCACGA 59.138 47.619 0.00 0.00 0.00 4.35
946 1055 1.659211 GCGACTGTAAAACCAAGCACG 60.659 52.381 0.00 0.00 0.00 5.34
947 1056 1.332375 TGCGACTGTAAAACCAAGCAC 59.668 47.619 0.00 0.00 0.00 4.40
948 1057 1.601903 CTGCGACTGTAAAACCAAGCA 59.398 47.619 0.00 0.00 0.00 3.91
949 1058 1.069227 CCTGCGACTGTAAAACCAAGC 60.069 52.381 0.00 0.00 0.00 4.01
961 1070 2.363925 GGTACCTCCCCTGCGACT 60.364 66.667 4.06 0.00 0.00 4.18
962 1071 3.834799 CGGTACCTCCCCTGCGAC 61.835 72.222 10.90 0.00 0.00 5.19
965 1074 2.446036 ATCCGGTACCTCCCCTGC 60.446 66.667 10.90 0.00 0.00 4.85
966 1075 2.201022 CGATCCGGTACCTCCCCTG 61.201 68.421 10.90 0.00 0.00 4.45
967 1076 2.197875 CGATCCGGTACCTCCCCT 59.802 66.667 10.90 0.00 0.00 4.79
970 1079 1.108132 AAGCTCGATCCGGTACCTCC 61.108 60.000 10.90 0.00 0.00 4.30
1046 1156 1.427072 CCCCAGAACTCACCCTTGGT 61.427 60.000 0.00 0.00 35.62 3.67
1089 1202 2.561478 TTTTCTTGTTCCTCTCCCCG 57.439 50.000 0.00 0.00 0.00 5.73
1093 1206 5.563671 GCCAGTTCATTTTCTTGTTCCTCTC 60.564 44.000 0.00 0.00 0.00 3.20
1311 1426 7.218963 GCTACAACTTGCAAGCAGTTTATAATC 59.781 37.037 26.27 2.19 32.04 1.75
1358 1473 3.636313 TACTTCTTCCGCGGCCACG 62.636 63.158 23.51 6.08 44.63 4.94
1364 1479 1.323534 CACCGAATTACTTCTTCCGCG 59.676 52.381 0.00 0.00 0.00 6.46
1366 1481 2.671396 CCACACCGAATTACTTCTTCCG 59.329 50.000 0.00 0.00 0.00 4.30
1373 1488 3.074412 CAAGAAGCCACACCGAATTACT 58.926 45.455 0.00 0.00 0.00 2.24
1393 1509 3.466836 AGCTCACGAAATCAGAAACACA 58.533 40.909 0.00 0.00 0.00 3.72
1397 1513 6.801539 ATTTGTAGCTCACGAAATCAGAAA 57.198 33.333 0.00 0.00 34.12 2.52
1411 1527 4.852134 TGCACACATCAAATTTGTAGCT 57.148 36.364 17.47 0.00 32.00 3.32
1423 1539 1.009078 TGAGCGCTATTGCACACATC 58.991 50.000 11.50 0.00 39.64 3.06
1445 1562 2.024414 GGATCATAAGGCACCAACCAC 58.976 52.381 0.00 0.00 0.00 4.16
1446 1563 1.922447 AGGATCATAAGGCACCAACCA 59.078 47.619 0.00 0.00 0.00 3.67
1447 1564 2.092429 TCAGGATCATAAGGCACCAACC 60.092 50.000 0.00 0.00 0.00 3.77
1448 1565 3.281727 TCAGGATCATAAGGCACCAAC 57.718 47.619 0.00 0.00 0.00 3.77
1449 1566 4.314522 TTTCAGGATCATAAGGCACCAA 57.685 40.909 0.00 0.00 0.00 3.67
1455 1572 6.126768 TGGTAGGAGTTTTCAGGATCATAAGG 60.127 42.308 0.00 0.00 0.00 2.69
1488 1605 3.907894 TTTATCTTTGCGGTGGTTCAC 57.092 42.857 0.00 0.00 0.00 3.18
1513 1630 3.463944 GTGGTATCAGAATTGTACGGGG 58.536 50.000 0.00 0.00 0.00 5.73
1531 1648 1.140852 TGGAAGAACACAGTCAGGTGG 59.859 52.381 0.00 0.00 43.08 4.61
1542 1660 8.298854 CAATATTCAAACATCAGTGGAAGAACA 58.701 33.333 0.00 0.00 0.00 3.18
1543 1661 8.299570 ACAATATTCAAACATCAGTGGAAGAAC 58.700 33.333 0.00 0.00 0.00 3.01
1564 1682 1.616374 TCACGACAGACCTGCACAATA 59.384 47.619 0.00 0.00 0.00 1.90
1966 2091 4.864633 AGTCGTGACATATATGCACTCAG 58.135 43.478 24.73 15.99 34.74 3.35
1984 2109 1.276421 AGACACATGGGGAGAAAGTCG 59.724 52.381 0.00 0.00 0.00 4.18
1988 2113 4.536090 ACTAATCAGACACATGGGGAGAAA 59.464 41.667 0.00 0.00 0.00 2.52
2213 2339 9.733556 TTGCTCTATTCAAAAGGTCTTACATAA 57.266 29.630 0.00 0.00 0.00 1.90
2395 2521 3.837399 AGGAACAGAGGGAGTAGTTCT 57.163 47.619 0.00 0.00 40.05 3.01
2418 2544 9.920946 TGTTGGAATCTCTAAAAAGGCTTATAT 57.079 29.630 0.00 0.00 0.00 0.86
2419 2545 9.174166 GTGTTGGAATCTCTAAAAAGGCTTATA 57.826 33.333 0.00 0.00 0.00 0.98
2421 2547 6.148811 CGTGTTGGAATCTCTAAAAAGGCTTA 59.851 38.462 0.00 0.00 0.00 3.09
2422 2548 5.048713 CGTGTTGGAATCTCTAAAAAGGCTT 60.049 40.000 0.00 0.00 0.00 4.35
2423 2549 4.455877 CGTGTTGGAATCTCTAAAAAGGCT 59.544 41.667 0.00 0.00 0.00 4.58
2424 2550 4.379499 CCGTGTTGGAATCTCTAAAAAGGC 60.379 45.833 0.00 0.00 42.00 4.35
2425 2551 5.001232 TCCGTGTTGGAATCTCTAAAAAGG 58.999 41.667 0.00 0.00 46.38 3.11
2439 2565 3.316029 TCCGTATACATAGTCCGTGTTGG 59.684 47.826 3.32 0.00 40.09 3.77
2440 2566 4.534168 CTCCGTATACATAGTCCGTGTTG 58.466 47.826 3.32 0.00 0.00 3.33
2441 2567 3.004106 GCTCCGTATACATAGTCCGTGTT 59.996 47.826 3.32 0.00 0.00 3.32
2442 2568 2.551459 GCTCCGTATACATAGTCCGTGT 59.449 50.000 3.32 0.00 0.00 4.49
2443 2569 2.551032 TGCTCCGTATACATAGTCCGTG 59.449 50.000 3.32 0.00 0.00 4.94
2444 2570 2.854963 TGCTCCGTATACATAGTCCGT 58.145 47.619 3.32 0.00 0.00 4.69
2445 2571 3.909776 TTGCTCCGTATACATAGTCCG 57.090 47.619 3.32 0.00 0.00 4.79
2446 2572 6.220930 TCATTTTGCTCCGTATACATAGTCC 58.779 40.000 3.32 0.00 0.00 3.85
2447 2573 6.924060 ACTCATTTTGCTCCGTATACATAGTC 59.076 38.462 3.32 0.00 0.00 2.59
2448 2574 6.701841 CACTCATTTTGCTCCGTATACATAGT 59.298 38.462 3.32 0.00 0.00 2.12
2449 2575 6.923508 TCACTCATTTTGCTCCGTATACATAG 59.076 38.462 3.32 0.53 0.00 2.23
2450 2576 6.811954 TCACTCATTTTGCTCCGTATACATA 58.188 36.000 3.32 0.00 0.00 2.29
2451 2577 5.670485 TCACTCATTTTGCTCCGTATACAT 58.330 37.500 3.32 0.00 0.00 2.29
2452 2578 5.079689 TCACTCATTTTGCTCCGTATACA 57.920 39.130 3.32 0.00 0.00 2.29
2453 2579 6.480320 AGATTCACTCATTTTGCTCCGTATAC 59.520 38.462 0.00 0.00 0.00 1.47
2454 2580 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
2455 2581 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2456 2582 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2457 2583 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2458 2584 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2459 2585 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2460 2586 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2513 2639 9.301897 AGCCTTTTTAGAATTTCAATACAGACT 57.698 29.630 0.00 0.00 0.00 3.24
2514 2640 9.914131 AAGCCTTTTTAGAATTTCAATACAGAC 57.086 29.630 0.00 0.00 0.00 3.51
2532 2658 9.147732 CCCTCCATTTCTAAATATAAGCCTTTT 57.852 33.333 0.00 0.00 0.00 2.27
2533 2659 8.511126 TCCCTCCATTTCTAAATATAAGCCTTT 58.489 33.333 0.00 0.00 0.00 3.11
2534 2660 8.057246 TCCCTCCATTTCTAAATATAAGCCTT 57.943 34.615 0.00 0.00 0.00 4.35
2535 2661 7.295911 ACTCCCTCCATTTCTAAATATAAGCCT 59.704 37.037 0.00 0.00 0.00 4.58
2536 2662 7.462590 ACTCCCTCCATTTCTAAATATAAGCC 58.537 38.462 0.00 0.00 0.00 4.35
2544 2670 9.457436 GTGTAAATTACTCCCTCCATTTCTAAA 57.543 33.333 4.67 0.00 0.00 1.85
2545 2671 8.832735 AGTGTAAATTACTCCCTCCATTTCTAA 58.167 33.333 4.67 0.00 0.00 2.10
2546 2672 8.388656 AGTGTAAATTACTCCCTCCATTTCTA 57.611 34.615 4.67 0.00 0.00 2.10
2547 2673 7.272144 AGTGTAAATTACTCCCTCCATTTCT 57.728 36.000 4.67 0.00 0.00 2.52
2548 2674 9.628500 AATAGTGTAAATTACTCCCTCCATTTC 57.372 33.333 4.67 0.00 0.00 2.17
2552 2678 9.442062 TGATAATAGTGTAAATTACTCCCTCCA 57.558 33.333 4.67 0.00 0.00 3.86
2553 2679 9.708092 GTGATAATAGTGTAAATTACTCCCTCC 57.292 37.037 4.67 0.00 0.00 4.30
2556 2682 8.989980 GCAGTGATAATAGTGTAAATTACTCCC 58.010 37.037 4.67 0.00 0.00 4.30
2557 2683 9.765795 AGCAGTGATAATAGTGTAAATTACTCC 57.234 33.333 4.67 0.00 0.00 3.85
2743 2869 1.340991 TGGCTCCAAATAGGGTTGCTC 60.341 52.381 0.00 0.00 38.24 4.26
2860 2986 0.392193 CGGGATGCAGAGAAAGTGCT 60.392 55.000 0.00 0.00 41.78 4.40
2875 3001 2.905075 CATTGCTCAGTGATTACGGGA 58.095 47.619 0.00 0.00 0.00 5.14
2878 3004 4.610007 GCATAGCATTGCTCAGTGATTACG 60.610 45.833 15.81 0.00 40.44 3.18
3040 3166 4.014406 GGATTGGGAATTCGTTTACTGGT 58.986 43.478 0.00 0.00 0.00 4.00
3148 3289 4.404394 TCCACTCACACTACAGAAACTTCA 59.596 41.667 0.00 0.00 0.00 3.02
3182 3323 3.186909 TCTGCGTATGTATCTGTTGCAC 58.813 45.455 0.00 0.00 0.00 4.57
3339 3486 5.520632 ACTAACAACGGTATCATCATCTCG 58.479 41.667 0.00 0.00 0.00 4.04
3340 3487 6.418226 GTGACTAACAACGGTATCATCATCTC 59.582 42.308 0.00 0.00 0.00 2.75
3353 3500 1.577468 TGCACAGGTGACTAACAACG 58.423 50.000 3.10 0.00 41.74 4.10
3355 3502 4.968259 ACTTATGCACAGGTGACTAACAA 58.032 39.130 3.10 0.00 40.21 2.83
3373 3520 7.588854 CGGACTGTCGATTCGAAAATATACTTA 59.411 37.037 10.87 0.00 37.72 2.24
3387 3534 0.966920 ACAAGGTCGGACTGTCGATT 59.033 50.000 8.23 0.00 41.40 3.34
3399 3546 3.157087 ACCACCAATTGATCACAAGGTC 58.843 45.455 7.12 0.00 39.46 3.85
3406 3553 1.452110 CAGCGACCACCAATTGATCA 58.548 50.000 7.12 0.00 0.00 2.92
3412 3559 0.957395 CTGAAGCAGCGACCACCAAT 60.957 55.000 0.00 0.00 0.00 3.16
3463 3610 1.455217 GGGCTGCAGCTCCATTGAT 60.455 57.895 35.82 0.00 41.70 2.57
3497 3644 1.963515 ACAAGGGCAGAAAATGGTCAC 59.036 47.619 0.00 0.00 0.00 3.67
3528 3675 3.270027 CGTTGGGATGAAATAGCACAGA 58.730 45.455 0.00 0.00 0.00 3.41
3558 3705 1.951181 GCTGTCGAACGCATACGCAA 61.951 55.000 2.61 0.00 45.53 4.85
3562 3709 1.346365 TTCTGCTGTCGAACGCATAC 58.654 50.000 9.93 0.00 35.32 2.39
3589 3736 0.916086 TGGGCAATTACCATCCGTCT 59.084 50.000 0.00 0.00 31.83 4.18
3632 3779 0.692419 AATGTCGAGCTGGGGAGGAT 60.692 55.000 0.00 0.00 0.00 3.24
3751 3898 1.299468 CGATCTCCTCGGAAAGGCG 60.299 63.158 0.00 0.00 45.78 5.52
3796 3943 3.581332 TCCGGAAATATGGTATGTCTCCC 59.419 47.826 0.00 0.00 0.00 4.30
3877 4024 1.197036 GTTACCTTTCTTGCGGTGCTC 59.803 52.381 0.00 0.00 34.76 4.26
3917 4064 1.532868 GTTTCACTCGATGCAGCAAGT 59.467 47.619 1.53 0.00 0.00 3.16
3928 4075 2.128035 GCGATATCCCTGTTTCACTCG 58.872 52.381 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.