Multiple sequence alignment - TraesCS2A01G157400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G157400 chr2A 100.000 2256 0 0 1 2256 104029327 104027072 0.000000e+00 4167.0
1 TraesCS2A01G157400 chr2A 100.000 505 0 0 2564 3068 104026764 104026260 0.000000e+00 933.0
2 TraesCS2A01G157400 chr2A 84.447 733 87 18 1023 1735 103985626 103984901 0.000000e+00 697.0
3 TraesCS2A01G157400 chr2A 92.347 196 11 2 2876 3068 395770070 395770264 3.010000e-70 276.0
4 TraesCS2A01G157400 chr2A 90.341 176 16 1 1 176 652534286 652534112 2.380000e-56 230.0
5 TraesCS2A01G157400 chr2A 88.415 164 19 0 13 176 34154561 34154724 6.710000e-47 198.0
6 TraesCS2A01G157400 chr2A 88.024 167 19 1 11 176 59003471 59003305 2.410000e-46 196.0
7 TraesCS2A01G157400 chr2A 90.769 65 4 1 1847 1911 103912693 103912631 5.450000e-13 86.1
8 TraesCS2A01G157400 chr2A 95.000 40 0 2 2822 2859 385330618 385330579 9.190000e-06 62.1
9 TraesCS2A01G157400 chr2A 97.143 35 1 0 2821 2855 308216788 308216822 3.300000e-05 60.2
10 TraesCS2A01G157400 chr2D 96.569 1370 33 9 889 2255 107694883 107693525 0.000000e+00 2257.0
11 TraesCS2A01G157400 chr2D 85.961 983 112 13 945 1911 107576094 107575122 0.000000e+00 1027.0
12 TraesCS2A01G157400 chr2D 89.610 693 43 16 176 854 107695557 107694880 0.000000e+00 854.0
13 TraesCS2A01G157400 chr2D 94.558 147 8 0 2647 2793 107693495 107693349 8.560000e-56 228.0
14 TraesCS2A01G157400 chr2B 94.251 1322 46 12 945 2255 157736122 157734820 0.000000e+00 1993.0
15 TraesCS2A01G157400 chr2B 88.361 421 30 12 174 580 157737184 157736769 3.560000e-134 488.0
16 TraesCS2A01G157400 chr2B 94.576 295 13 2 563 854 157736453 157736159 1.300000e-123 453.0
17 TraesCS2A01G157400 chr2B 91.716 169 13 1 2625 2793 157734501 157734334 1.840000e-57 233.0
18 TraesCS2A01G157400 chr4D 96.774 248 8 0 2821 3068 190953511 190953758 6.120000e-112 414.0
19 TraesCS2A01G157400 chr4D 89.600 125 11 1 2662 2786 500539561 500539683 1.140000e-34 158.0
20 TraesCS2A01G157400 chr4D 96.774 31 1 0 2794 2824 10486927 10486957 6.000000e-03 52.8
21 TraesCS2A01G157400 chr7D 96.735 245 8 0 2824 3068 195816762 195817006 2.850000e-110 409.0
22 TraesCS2A01G157400 chr7B 96.698 212 7 0 2857 3068 159718882 159719093 1.350000e-93 353.0
23 TraesCS2A01G157400 chr7B 88.235 51 3 3 2819 2868 172331159 172331207 1.190000e-04 58.4
24 TraesCS2A01G157400 chr6B 88.627 255 22 3 2816 3068 61273609 61273858 1.380000e-78 303.0
25 TraesCS2A01G157400 chr1B 92.857 196 10 2 2876 3068 430791814 430791620 6.480000e-72 281.0
26 TraesCS2A01G157400 chr1B 92.857 196 9 3 2876 3068 12452859 12452666 2.330000e-71 279.0
27 TraesCS2A01G157400 chr1B 92.347 196 11 2 2876 3068 296301404 296301598 3.010000e-70 276.0
28 TraesCS2A01G157400 chr1B 91.837 196 12 2 2876 3068 164108914 164109108 1.400000e-68 270.0
29 TraesCS2A01G157400 chr3A 93.258 178 12 0 1 178 509547472 509547649 2.350000e-66 263.0
30 TraesCS2A01G157400 chr6A 90.374 187 15 2 1 184 507131364 507131550 3.060000e-60 243.0
31 TraesCS2A01G157400 chr6A 97.368 38 0 1 2824 2861 595052917 595052881 2.550000e-06 63.9
32 TraesCS2A01G157400 chr1A 89.266 177 17 1 1 175 420528520 420528344 1.430000e-53 220.0
33 TraesCS2A01G157400 chr1A 89.881 168 17 0 11 178 496302197 496302364 1.850000e-52 217.0
34 TraesCS2A01G157400 chr1A 97.222 36 1 0 2819 2854 222352002 222351967 9.190000e-06 62.1
35 TraesCS2A01G157400 chr7A 89.349 169 18 0 11 179 55368590 55368758 2.400000e-51 213.0
36 TraesCS2A01G157400 chr7A 100.000 30 0 0 2795 2824 701305627 701305656 4.270000e-04 56.5
37 TraesCS2A01G157400 chr5A 88.415 164 19 0 13 176 705498035 705498198 6.710000e-47 198.0
38 TraesCS2A01G157400 chr5A 100.000 29 0 0 2793 2821 402104579 402104551 2.000000e-03 54.7
39 TraesCS2A01G157400 chr4A 100.000 33 0 0 2793 2825 713506909 713506941 9.190000e-06 62.1
40 TraesCS2A01G157400 chr4A 96.774 31 1 0 2794 2824 701287340 701287310 6.000000e-03 52.8
41 TraesCS2A01G157400 chr1D 97.222 36 1 0 2819 2854 162060968 162061003 9.190000e-06 62.1
42 TraesCS2A01G157400 chr5B 100.000 31 0 0 2794 2824 251343310 251343280 1.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G157400 chr2A 104026260 104029327 3067 True 2550.00 4167 100.000 1 3068 2 chr2A.!!$R6 3067
1 TraesCS2A01G157400 chr2A 103984901 103985626 725 True 697.00 697 84.447 1023 1735 1 chr2A.!!$R3 712
2 TraesCS2A01G157400 chr2D 107693349 107695557 2208 True 1113.00 2257 93.579 176 2793 3 chr2D.!!$R2 2617
3 TraesCS2A01G157400 chr2D 107575122 107576094 972 True 1027.00 1027 85.961 945 1911 1 chr2D.!!$R1 966
4 TraesCS2A01G157400 chr2B 157734334 157737184 2850 True 791.75 1993 92.226 174 2793 4 chr2B.!!$R1 2619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.388391 CCAAACCAAACGATGCGCAT 60.388 50.0 25.66 25.66 0.00 4.73 F
725 1075 0.629596 TCCTACCTGGACTCCGATGT 59.370 55.0 0.00 0.00 40.56 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 1407 1.59431 GGCGAGGAGAGAAAGCAGT 59.406 57.895 0.0 0.00 0.00 4.40 R
2618 3027 0.03309 GTCCGACATTATCCGGGGAC 59.967 60.000 0.0 3.78 45.36 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.741985 CAATGCACCGGCGAGTCA 60.742 61.111 9.30 2.52 45.35 3.41
18 19 2.742372 AATGCACCGGCGAGTCAC 60.742 61.111 9.30 0.00 45.35 3.67
31 32 4.741781 GTCACGCGCGCTGCATTT 62.742 61.111 32.58 5.07 46.97 2.32
32 33 4.024143 TCACGCGCGCTGCATTTT 62.024 55.556 32.58 4.13 46.97 1.82
33 34 3.098958 CACGCGCGCTGCATTTTT 61.099 55.556 32.58 3.21 46.97 1.94
34 35 3.098958 ACGCGCGCTGCATTTTTG 61.099 55.556 32.58 12.54 46.97 2.44
35 36 4.473066 CGCGCGCTGCATTTTTGC 62.473 61.111 30.48 6.56 46.97 3.68
39 40 4.473066 CGCTGCATTTTTGCGCGC 62.473 61.111 27.26 27.26 44.76 6.86
40 41 3.107661 GCTGCATTTTTGCGCGCT 61.108 55.556 33.29 8.62 37.69 5.92
41 42 2.767059 CTGCATTTTTGCGCGCTG 59.233 55.556 33.29 22.29 37.69 5.18
42 43 3.343463 CTGCATTTTTGCGCGCTGC 62.343 57.895 33.29 30.70 46.70 5.25
43 44 3.107661 GCATTTTTGCGCGCTGCT 61.108 55.556 33.29 9.52 46.63 4.24
44 45 2.767059 CATTTTTGCGCGCTGCTG 59.233 55.556 33.29 17.58 46.63 4.41
45 46 2.431260 ATTTTTGCGCGCTGCTGG 60.431 55.556 33.29 0.43 46.63 4.85
46 47 2.918345 ATTTTTGCGCGCTGCTGGA 61.918 52.632 33.29 13.45 46.63 3.86
47 48 2.807631 ATTTTTGCGCGCTGCTGGAG 62.808 55.000 33.29 0.00 46.63 3.86
66 67 4.741781 GACGCGCACGCTGCATTT 62.742 61.111 13.70 0.00 45.36 2.32
67 68 4.741781 ACGCGCACGCTGCATTTC 62.742 61.111 13.70 0.00 45.36 2.17
68 69 4.740062 CGCGCACGCTGCATTTCA 62.740 61.111 13.70 0.00 45.36 2.69
69 70 2.872925 GCGCACGCTGCATTTCAG 60.873 61.111 7.96 0.00 45.36 3.02
76 77 3.807538 CTGCATTTCAGCGCGGCT 61.808 61.111 8.83 2.05 40.77 5.52
114 115 3.955101 CCGCGCCAAACCAAACGA 61.955 61.111 0.00 0.00 0.00 3.85
115 116 2.254051 CGCGCCAAACCAAACGAT 59.746 55.556 0.00 0.00 0.00 3.73
116 117 2.080062 CGCGCCAAACCAAACGATG 61.080 57.895 0.00 0.00 0.00 3.84
117 118 2.371923 GCGCCAAACCAAACGATGC 61.372 57.895 0.00 0.00 0.00 3.91
118 119 2.080062 CGCCAAACCAAACGATGCG 61.080 57.895 0.00 0.00 0.00 4.73
119 120 2.371923 GCCAAACCAAACGATGCGC 61.372 57.895 0.00 0.00 0.00 6.09
120 121 1.007964 CCAAACCAAACGATGCGCA 60.008 52.632 14.96 14.96 0.00 6.09
121 122 0.388391 CCAAACCAAACGATGCGCAT 60.388 50.000 25.66 25.66 0.00 4.73
122 123 0.709467 CAAACCAAACGATGCGCATG 59.291 50.000 30.76 21.42 0.00 4.06
123 124 1.008361 AAACCAAACGATGCGCATGC 61.008 50.000 30.76 17.81 43.20 4.06
133 134 3.688136 GCGCATGCAGCAAATCTG 58.312 55.556 23.37 0.00 46.13 2.90
134 135 1.153901 GCGCATGCAGCAAATCTGT 60.154 52.632 23.37 0.00 46.13 3.41
135 136 0.734942 GCGCATGCAGCAAATCTGTT 60.735 50.000 23.37 0.00 46.13 3.16
136 137 1.705256 CGCATGCAGCAAATCTGTTT 58.295 45.000 19.57 0.00 46.13 2.83
137 138 2.063266 CGCATGCAGCAAATCTGTTTT 58.937 42.857 19.57 0.00 46.13 2.43
138 139 2.477375 CGCATGCAGCAAATCTGTTTTT 59.523 40.909 19.57 0.00 46.13 1.94
168 169 3.423154 GTCCGGCGCCTGTTGAAG 61.423 66.667 26.68 6.56 0.00 3.02
169 170 3.621805 TCCGGCGCCTGTTGAAGA 61.622 61.111 26.68 7.41 0.00 2.87
170 171 2.436646 CCGGCGCCTGTTGAAGAT 60.437 61.111 26.68 0.00 0.00 2.40
171 172 2.753966 CCGGCGCCTGTTGAAGATG 61.754 63.158 26.68 4.04 0.00 2.90
172 173 2.486966 GGCGCCTGTTGAAGATGC 59.513 61.111 22.15 0.00 0.00 3.91
173 174 2.042831 GGCGCCTGTTGAAGATGCT 61.043 57.895 22.15 0.00 0.00 3.79
174 175 1.427020 GCGCCTGTTGAAGATGCTC 59.573 57.895 0.00 0.00 0.00 4.26
184 185 7.099764 CCTGTTGAAGATGCTCTTAACTCTTA 58.900 38.462 0.00 0.00 36.73 2.10
192 193 7.548967 AGATGCTCTTAACTCTTACTGTAACC 58.451 38.462 0.00 0.00 0.00 2.85
208 209 0.957395 AACCTTCAGTGCGGCATCAG 60.957 55.000 5.72 0.00 0.00 2.90
233 234 3.337358 TGCATCGAAATTCAGAAGCTGA 58.663 40.909 12.95 0.00 38.87 4.26
234 235 3.943381 TGCATCGAAATTCAGAAGCTGAT 59.057 39.130 12.95 0.00 40.39 2.90
242 243 6.402875 CGAAATTCAGAAGCTGATGTTGATCA 60.403 38.462 0.00 0.00 40.39 2.92
243 244 6.829229 AATTCAGAAGCTGATGTTGATCAA 57.171 33.333 3.38 3.38 40.39 2.57
251 252 3.538591 CTGATGTTGATCAAGCCAGCTA 58.461 45.455 8.80 0.00 38.17 3.32
262 263 1.453928 GCCAGCTATTGTCCCACCC 60.454 63.158 0.00 0.00 0.00 4.61
342 345 1.762370 CCAATAATTGGCCTTCCCCAC 59.238 52.381 3.32 0.00 45.17 4.61
483 486 6.238566 CCATCTAATAATGTCAGTTGCACCTG 60.239 42.308 4.61 4.61 0.00 4.00
488 491 4.734398 AATGTCAGTTGCACCTGAAAAA 57.266 36.364 16.25 5.32 42.81 1.94
490 493 2.165437 TGTCAGTTGCACCTGAAAAACC 59.835 45.455 16.25 3.73 42.81 3.27
491 494 2.165437 GTCAGTTGCACCTGAAAAACCA 59.835 45.455 16.25 0.00 42.81 3.67
492 495 2.828520 TCAGTTGCACCTGAAAAACCAA 59.171 40.909 12.05 0.00 38.49 3.67
497 500 5.070313 AGTTGCACCTGAAAAACCAACATAT 59.930 36.000 0.00 0.00 36.08 1.78
500 503 5.304101 TGCACCTGAAAAACCAACATATTCT 59.696 36.000 0.00 0.00 0.00 2.40
513 516 8.169977 ACCAACATATTCTACAGCATTATTGG 57.830 34.615 0.00 0.00 38.12 3.16
515 518 8.292448 CCAACATATTCTACAGCATTATTGGTC 58.708 37.037 0.00 0.00 0.00 4.02
516 519 7.986085 ACATATTCTACAGCATTATTGGTCC 57.014 36.000 0.00 0.00 0.00 4.46
517 520 7.749666 ACATATTCTACAGCATTATTGGTCCT 58.250 34.615 0.00 0.00 0.00 3.85
518 521 8.220559 ACATATTCTACAGCATTATTGGTCCTT 58.779 33.333 0.00 0.00 0.00 3.36
519 522 9.725019 CATATTCTACAGCATTATTGGTCCTTA 57.275 33.333 0.00 0.00 0.00 2.69
524 527 6.252599 ACAGCATTATTGGTCCTTATCAGA 57.747 37.500 0.00 0.00 0.00 3.27
682 1032 7.332926 CCTAATCTAAACGATTGGATCAGGATG 59.667 40.741 13.82 0.00 42.07 3.51
702 1052 6.014669 AGGATGAGGAATCTATCTACACTTGC 60.015 42.308 0.00 0.00 35.43 4.01
725 1075 0.629596 TCCTACCTGGACTCCGATGT 59.370 55.000 0.00 0.00 40.56 3.06
775 1125 2.171341 GTTTCCTCGAAACTGAGCCT 57.829 50.000 9.47 0.00 45.65 4.58
785 1135 2.486472 AACTGAGCCTGATCAACCAG 57.514 50.000 0.00 4.52 0.00 4.00
884 1237 9.938280 TTTCCGAGGAATTAGTACCATATATTG 57.062 33.333 5.29 0.00 33.79 1.90
885 1238 8.660295 TCCGAGGAATTAGTACCATATATTGT 57.340 34.615 0.00 0.00 0.00 2.71
886 1239 9.758021 TCCGAGGAATTAGTACCATATATTGTA 57.242 33.333 0.00 0.00 0.00 2.41
887 1240 9.798994 CCGAGGAATTAGTACCATATATTGTAC 57.201 37.037 15.92 15.92 38.06 2.90
907 1260 6.377780 TGTACTATAAACTTGTCGCGTGTTA 58.622 36.000 5.77 0.00 0.00 2.41
935 1288 7.215789 TGAAGTTGTTACATTACGTCCCTAAA 58.784 34.615 0.00 0.00 0.00 1.85
936 1289 7.714377 TGAAGTTGTTACATTACGTCCCTAAAA 59.286 33.333 0.00 0.00 0.00 1.52
937 1290 8.449251 AAGTTGTTACATTACGTCCCTAAAAA 57.551 30.769 0.00 0.00 0.00 1.94
1042 1407 3.461773 GTGCTCTCGGCCCTGCTA 61.462 66.667 0.00 0.00 40.92 3.49
1055 1420 1.134551 CCCTGCTACTGCTTTCTCTCC 60.135 57.143 0.00 0.00 40.48 3.71
1131 1500 9.352191 AGTGAGTAATACCACTACTAAATCGAT 57.648 33.333 11.14 0.00 41.38 3.59
1132 1501 9.395707 GTGAGTAATACCACTACTAAATCGATG 57.604 37.037 0.00 0.00 29.62 3.84
1133 1502 9.346005 TGAGTAATACCACTACTAAATCGATGA 57.654 33.333 0.00 0.00 29.62 2.92
1158 1527 8.994429 ATGATGATTTTACGATCTGTAGATCC 57.006 34.615 14.48 1.92 46.16 3.36
1174 1568 8.762645 TCTGTAGATCCATTCTTGTACAGATTT 58.237 33.333 11.20 0.00 40.34 2.17
1224 1620 0.731855 AAAGCGGCGAGTCTAACGAC 60.732 55.000 12.98 0.00 40.54 4.34
1814 2218 0.037697 GGTGTACCAGTGCATCGACA 60.038 55.000 0.00 0.00 35.64 4.35
1903 2309 3.513515 TGCCGGCCTTCTGATTAAATTTT 59.486 39.130 26.77 0.00 0.00 1.82
1981 2387 3.257561 CTGATTGGCTCGACGCGG 61.258 66.667 12.47 0.00 40.44 6.46
2043 2449 4.022416 TGATGGATGTACCTTTGTGTTTGC 60.022 41.667 0.00 0.00 39.86 3.68
2183 2592 3.737774 GCTCCACAAATTCTGAACAAAGC 59.262 43.478 0.00 0.00 0.00 3.51
2198 2607 6.169094 TGAACAAAGCCAAAAGATGAAACAA 58.831 32.000 0.00 0.00 0.00 2.83
2207 2616 6.088085 GCCAAAAGATGAAACAAAGTATGTCG 59.912 38.462 0.00 0.00 42.99 4.35
2223 2632 2.427410 CGCGGCACTTTGAGTTGC 60.427 61.111 0.00 0.00 0.00 4.17
2239 2648 6.984740 TGAGTTGCGATATTTTGTTGTTTC 57.015 33.333 0.00 0.00 0.00 2.78
2255 2664 4.535526 TGTTTCGATGAGATGACCTTGA 57.464 40.909 0.00 0.00 0.00 3.02
2597 3006 7.298374 AGTTGGATTTAATAAATCTCCCCTCC 58.702 38.462 20.94 8.50 45.17 4.30
2598 3007 6.214177 TGGATTTAATAAATCTCCCCTCCC 57.786 41.667 20.94 7.13 45.17 4.30
2599 3008 5.075900 TGGATTTAATAAATCTCCCCTCCCC 59.924 44.000 20.94 6.55 45.17 4.81
2600 3009 5.518546 GGATTTAATAAATCTCCCCTCCCCC 60.519 48.000 20.94 2.39 45.17 5.40
2601 3010 2.940011 AATAAATCTCCCCTCCCCCT 57.060 50.000 0.00 0.00 0.00 4.79
2602 3011 5.458881 TTAATAAATCTCCCCTCCCCCTA 57.541 43.478 0.00 0.00 0.00 3.53
2603 3012 4.326701 AATAAATCTCCCCTCCCCCTAA 57.673 45.455 0.00 0.00 0.00 2.69
2604 3013 1.908643 AAATCTCCCCTCCCCCTAAC 58.091 55.000 0.00 0.00 0.00 2.34
2605 3014 0.728843 AATCTCCCCTCCCCCTAACA 59.271 55.000 0.00 0.00 0.00 2.41
2606 3015 0.960423 ATCTCCCCTCCCCCTAACAT 59.040 55.000 0.00 0.00 0.00 2.71
2607 3016 0.728843 TCTCCCCTCCCCCTAACATT 59.271 55.000 0.00 0.00 0.00 2.71
2608 3017 1.083912 TCTCCCCTCCCCCTAACATTT 59.916 52.381 0.00 0.00 0.00 2.32
2609 3018 2.322855 TCTCCCCTCCCCCTAACATTTA 59.677 50.000 0.00 0.00 0.00 1.40
2610 3019 3.049778 TCTCCCCTCCCCCTAACATTTAT 60.050 47.826 0.00 0.00 0.00 1.40
2611 3020 4.175268 TCTCCCCTCCCCCTAACATTTATA 59.825 45.833 0.00 0.00 0.00 0.98
2612 3021 4.509321 TCCCCTCCCCCTAACATTTATAG 58.491 47.826 0.00 0.00 0.00 1.31
2613 3022 3.591977 CCCCTCCCCCTAACATTTATAGG 59.408 52.174 0.00 0.00 39.76 2.57
2614 3023 4.509321 CCCTCCCCCTAACATTTATAGGA 58.491 47.826 1.19 0.00 42.16 2.94
2615 3024 4.288887 CCCTCCCCCTAACATTTATAGGAC 59.711 50.000 1.19 0.00 42.16 3.85
2616 3025 4.020485 CCTCCCCCTAACATTTATAGGACG 60.020 50.000 1.19 0.00 42.16 4.79
2617 3026 4.559726 TCCCCCTAACATTTATAGGACGT 58.440 43.478 0.00 0.00 42.16 4.34
2618 3027 4.345837 TCCCCCTAACATTTATAGGACGTG 59.654 45.833 0.00 0.00 42.16 4.49
2619 3028 4.102054 CCCCCTAACATTTATAGGACGTGT 59.898 45.833 0.00 0.00 42.16 4.49
2620 3029 5.295152 CCCCTAACATTTATAGGACGTGTC 58.705 45.833 0.00 0.00 42.16 3.67
2641 3265 3.174790 CGGATAATGTCGGACGACC 57.825 57.895 20.57 6.03 43.97 4.79
2708 3332 1.757306 CTCTTCATGGCCGGCCTAT 59.243 57.895 43.34 31.10 36.94 2.57
2719 3343 0.320421 CCGGCCTATGGATGTAACGG 60.320 60.000 0.00 0.00 0.00 4.44
2793 3417 5.737635 GCCATGACTAGTCCTGTAGTTGATC 60.738 48.000 21.96 0.00 33.18 2.92
2794 3418 5.596361 CCATGACTAGTCCTGTAGTTGATCT 59.404 44.000 21.96 0.00 33.18 2.75
2795 3419 6.238897 CCATGACTAGTCCTGTAGTTGATCTC 60.239 46.154 21.96 0.00 33.18 2.75
2796 3420 4.876679 TGACTAGTCCTGTAGTTGATCTCG 59.123 45.833 20.11 0.00 33.18 4.04
2797 3421 5.100344 ACTAGTCCTGTAGTTGATCTCGA 57.900 43.478 0.00 0.00 28.15 4.04
2798 3422 5.498393 ACTAGTCCTGTAGTTGATCTCGAA 58.502 41.667 0.00 0.00 28.15 3.71
2799 3423 5.944599 ACTAGTCCTGTAGTTGATCTCGAAA 59.055 40.000 0.00 0.00 28.15 3.46
2800 3424 5.923733 AGTCCTGTAGTTGATCTCGAAAT 57.076 39.130 0.00 0.00 0.00 2.17
2801 3425 7.774157 ACTAGTCCTGTAGTTGATCTCGAAATA 59.226 37.037 0.00 0.00 28.15 1.40
2802 3426 7.033530 AGTCCTGTAGTTGATCTCGAAATAG 57.966 40.000 0.00 0.00 0.00 1.73
2803 3427 6.829298 AGTCCTGTAGTTGATCTCGAAATAGA 59.171 38.462 0.00 0.00 0.00 1.98
2804 3428 6.913673 GTCCTGTAGTTGATCTCGAAATAGAC 59.086 42.308 0.00 0.00 0.00 2.59
2805 3429 6.829298 TCCTGTAGTTGATCTCGAAATAGACT 59.171 38.462 0.00 0.00 0.00 3.24
2806 3430 7.339721 TCCTGTAGTTGATCTCGAAATAGACTT 59.660 37.037 0.00 0.00 0.00 3.01
2807 3431 7.976734 CCTGTAGTTGATCTCGAAATAGACTTT 59.023 37.037 0.00 0.00 0.00 2.66
2808 3432 8.912787 TGTAGTTGATCTCGAAATAGACTTTC 57.087 34.615 0.00 0.00 0.00 2.62
2814 3438 0.928229 CGAAATAGACTTTCGCCCCG 59.072 55.000 7.11 0.00 43.52 5.73
2815 3439 0.656259 GAAATAGACTTTCGCCCCGC 59.344 55.000 0.00 0.00 0.00 6.13
2816 3440 0.252197 AAATAGACTTTCGCCCCGCT 59.748 50.000 0.00 0.00 0.00 5.52
2817 3441 0.252197 AATAGACTTTCGCCCCGCTT 59.748 50.000 0.00 0.00 0.00 4.68
2818 3442 0.252197 ATAGACTTTCGCCCCGCTTT 59.748 50.000 0.00 0.00 0.00 3.51
2819 3443 0.896923 TAGACTTTCGCCCCGCTTTA 59.103 50.000 0.00 0.00 0.00 1.85
2820 3444 0.252197 AGACTTTCGCCCCGCTTTAT 59.748 50.000 0.00 0.00 0.00 1.40
2821 3445 1.483415 AGACTTTCGCCCCGCTTTATA 59.517 47.619 0.00 0.00 0.00 0.98
2822 3446 2.093341 AGACTTTCGCCCCGCTTTATAA 60.093 45.455 0.00 0.00 0.00 0.98
2823 3447 2.679336 GACTTTCGCCCCGCTTTATAAA 59.321 45.455 0.00 0.00 0.00 1.40
2824 3448 2.421073 ACTTTCGCCCCGCTTTATAAAC 59.579 45.455 0.00 0.00 0.00 2.01
2825 3449 2.406596 TTCGCCCCGCTTTATAAACT 57.593 45.000 0.00 0.00 0.00 2.66
2826 3450 3.540314 TTCGCCCCGCTTTATAAACTA 57.460 42.857 0.00 0.00 0.00 2.24
2827 3451 3.102052 TCGCCCCGCTTTATAAACTAG 57.898 47.619 0.00 0.00 0.00 2.57
2828 3452 2.694628 TCGCCCCGCTTTATAAACTAGA 59.305 45.455 0.00 0.00 0.00 2.43
2829 3453 3.322828 TCGCCCCGCTTTATAAACTAGAT 59.677 43.478 0.00 0.00 0.00 1.98
2830 3454 3.432252 CGCCCCGCTTTATAAACTAGATG 59.568 47.826 0.00 0.00 0.00 2.90
2831 3455 4.638304 GCCCCGCTTTATAAACTAGATGA 58.362 43.478 0.00 0.00 0.00 2.92
2832 3456 5.246307 GCCCCGCTTTATAAACTAGATGAT 58.754 41.667 0.00 0.00 0.00 2.45
2833 3457 5.122396 GCCCCGCTTTATAAACTAGATGATG 59.878 44.000 0.00 0.00 0.00 3.07
2834 3458 5.122396 CCCCGCTTTATAAACTAGATGATGC 59.878 44.000 0.00 0.00 0.00 3.91
2835 3459 5.122396 CCCGCTTTATAAACTAGATGATGCC 59.878 44.000 0.00 0.00 0.00 4.40
2836 3460 5.122396 CCGCTTTATAAACTAGATGATGCCC 59.878 44.000 0.00 0.00 0.00 5.36
2837 3461 5.122396 CGCTTTATAAACTAGATGATGCCCC 59.878 44.000 0.00 0.00 0.00 5.80
2838 3462 5.122396 GCTTTATAAACTAGATGATGCCCCG 59.878 44.000 0.00 0.00 0.00 5.73
2839 3463 2.543777 TAAACTAGATGATGCCCCGC 57.456 50.000 0.00 0.00 0.00 6.13
2840 3464 0.532862 AAACTAGATGATGCCCCGCG 60.533 55.000 0.00 0.00 0.00 6.46
2841 3465 2.740055 CTAGATGATGCCCCGCGC 60.740 66.667 0.00 0.00 38.31 6.86
2842 3466 4.662961 TAGATGATGCCCCGCGCG 62.663 66.667 25.67 25.67 42.08 6.86
2859 3483 2.086510 CGTTGCTACGGGACATTGG 58.913 57.895 13.04 0.00 43.94 3.16
2860 3484 0.672401 CGTTGCTACGGGACATTGGT 60.672 55.000 13.04 0.00 43.94 3.67
2861 3485 0.802494 GTTGCTACGGGACATTGGTG 59.198 55.000 0.00 0.00 0.00 4.17
2862 3486 0.958382 TTGCTACGGGACATTGGTGC 60.958 55.000 0.00 0.00 34.10 5.01
2863 3487 2.461110 GCTACGGGACATTGGTGCG 61.461 63.158 0.00 0.00 36.00 5.34
2864 3488 1.813753 CTACGGGACATTGGTGCGG 60.814 63.158 0.00 0.00 40.69 5.69
2865 3489 3.318006 TACGGGACATTGGTGCGGG 62.318 63.158 0.00 0.00 39.49 6.13
2866 3490 4.402528 CGGGACATTGGTGCGGGA 62.403 66.667 0.00 0.00 36.00 5.14
2867 3491 2.275418 GGGACATTGGTGCGGGAT 59.725 61.111 0.00 0.00 36.00 3.85
2868 3492 1.529796 GGGACATTGGTGCGGGATA 59.470 57.895 0.00 0.00 36.00 2.59
2869 3493 0.818040 GGGACATTGGTGCGGGATAC 60.818 60.000 0.00 0.00 36.00 2.24
2902 3526 9.801873 TTTTTCCTAAGCATATTAGCATGAAAC 57.198 29.630 0.00 0.00 36.85 2.78
2903 3527 8.518430 TTTCCTAAGCATATTAGCATGAAACA 57.482 30.769 0.00 0.00 36.85 2.83
2904 3528 8.696043 TTCCTAAGCATATTAGCATGAAACAT 57.304 30.769 0.00 0.00 36.85 2.71
2905 3529 8.102800 TCCTAAGCATATTAGCATGAAACATG 57.897 34.615 0.00 7.29 36.85 3.21
2906 3530 7.720957 TCCTAAGCATATTAGCATGAAACATGT 59.279 33.333 12.27 0.00 36.85 3.21
2907 3531 8.019669 CCTAAGCATATTAGCATGAAACATGTC 58.980 37.037 0.00 6.02 36.85 3.06
2908 3532 6.947644 AGCATATTAGCATGAAACATGTCA 57.052 33.333 0.00 0.00 36.85 3.58
2909 3533 6.967135 AGCATATTAGCATGAAACATGTCAG 58.033 36.000 0.00 0.00 36.85 3.51
2910 3534 6.769341 AGCATATTAGCATGAAACATGTCAGA 59.231 34.615 0.00 0.00 36.85 3.27
2911 3535 7.447545 AGCATATTAGCATGAAACATGTCAGAT 59.552 33.333 0.00 5.79 36.85 2.90
2912 3536 7.537649 GCATATTAGCATGAAACATGTCAGATG 59.462 37.037 0.00 2.74 0.00 2.90
2913 3537 8.780249 CATATTAGCATGAAACATGTCAGATGA 58.220 33.333 0.00 0.00 0.00 2.92
2914 3538 7.634671 ATTAGCATGAAACATGTCAGATGAA 57.365 32.000 0.00 0.00 0.00 2.57
2915 3539 5.970317 AGCATGAAACATGTCAGATGAAA 57.030 34.783 0.00 0.00 0.00 2.69
2916 3540 5.950883 AGCATGAAACATGTCAGATGAAAG 58.049 37.500 0.00 0.00 0.00 2.62
2917 3541 5.100259 GCATGAAACATGTCAGATGAAAGG 58.900 41.667 0.00 0.00 0.00 3.11
2918 3542 4.771590 TGAAACATGTCAGATGAAAGGC 57.228 40.909 0.00 0.00 0.00 4.35
2919 3543 3.189080 TGAAACATGTCAGATGAAAGGCG 59.811 43.478 0.00 0.00 0.00 5.52
2920 3544 2.768253 ACATGTCAGATGAAAGGCGA 57.232 45.000 0.00 0.00 0.00 5.54
2921 3545 3.057969 ACATGTCAGATGAAAGGCGAA 57.942 42.857 0.00 0.00 0.00 4.70
2922 3546 3.614092 ACATGTCAGATGAAAGGCGAAT 58.386 40.909 0.00 0.00 0.00 3.34
2923 3547 4.012374 ACATGTCAGATGAAAGGCGAATT 58.988 39.130 0.00 0.00 0.00 2.17
2924 3548 5.185454 ACATGTCAGATGAAAGGCGAATTA 58.815 37.500 0.00 0.00 0.00 1.40
2925 3549 5.647658 ACATGTCAGATGAAAGGCGAATTAA 59.352 36.000 0.00 0.00 0.00 1.40
2926 3550 5.545658 TGTCAGATGAAAGGCGAATTAAC 57.454 39.130 0.00 0.00 0.00 2.01
2927 3551 5.000591 TGTCAGATGAAAGGCGAATTAACA 58.999 37.500 0.00 0.00 0.00 2.41
2928 3552 5.471797 TGTCAGATGAAAGGCGAATTAACAA 59.528 36.000 0.00 0.00 0.00 2.83
2929 3553 5.795441 GTCAGATGAAAGGCGAATTAACAAC 59.205 40.000 0.00 0.00 0.00 3.32
2930 3554 5.705441 TCAGATGAAAGGCGAATTAACAACT 59.295 36.000 0.00 0.00 0.00 3.16
2931 3555 5.796935 CAGATGAAAGGCGAATTAACAACTG 59.203 40.000 0.00 0.00 0.00 3.16
2932 3556 4.497473 TGAAAGGCGAATTAACAACTGG 57.503 40.909 0.00 0.00 0.00 4.00
2933 3557 3.886505 TGAAAGGCGAATTAACAACTGGT 59.113 39.130 0.00 0.00 0.00 4.00
2934 3558 5.064558 TGAAAGGCGAATTAACAACTGGTA 58.935 37.500 0.00 0.00 0.00 3.25
2935 3559 5.180492 TGAAAGGCGAATTAACAACTGGTAG 59.820 40.000 0.00 0.00 0.00 3.18
2936 3560 4.281898 AGGCGAATTAACAACTGGTAGT 57.718 40.909 0.00 0.00 0.00 2.73
2937 3561 4.648651 AGGCGAATTAACAACTGGTAGTT 58.351 39.130 0.00 0.00 39.39 2.24
2952 3576 8.863872 AACTGGTAGTTGCTAGTAATTGAAAT 57.136 30.769 0.00 0.00 37.00 2.17
2953 3577 9.953565 AACTGGTAGTTGCTAGTAATTGAAATA 57.046 29.630 0.00 0.00 37.00 1.40
2973 3597 9.357161 TGAAATATAACAACAAACCCTTAGTGT 57.643 29.630 0.00 0.00 0.00 3.55
2978 3602 5.986501 ACAACAAACCCTTAGTGTTTTCA 57.013 34.783 0.00 0.00 33.82 2.69
2979 3603 6.538945 ACAACAAACCCTTAGTGTTTTCAT 57.461 33.333 0.00 0.00 33.82 2.57
2980 3604 6.337356 ACAACAAACCCTTAGTGTTTTCATG 58.663 36.000 0.00 0.00 33.82 3.07
2981 3605 6.071051 ACAACAAACCCTTAGTGTTTTCATGT 60.071 34.615 0.00 0.00 33.82 3.21
2982 3606 6.144078 ACAAACCCTTAGTGTTTTCATGTC 57.856 37.500 0.00 0.00 33.82 3.06
2983 3607 5.891551 ACAAACCCTTAGTGTTTTCATGTCT 59.108 36.000 0.00 0.00 33.82 3.41
2984 3608 6.183360 ACAAACCCTTAGTGTTTTCATGTCTG 60.183 38.462 0.00 0.00 33.82 3.51
2985 3609 4.398319 ACCCTTAGTGTTTTCATGTCTGG 58.602 43.478 0.00 0.00 0.00 3.86
2986 3610 3.191371 CCCTTAGTGTTTTCATGTCTGGC 59.809 47.826 0.00 0.00 0.00 4.85
2987 3611 3.820467 CCTTAGTGTTTTCATGTCTGGCA 59.180 43.478 0.00 0.00 0.00 4.92
2988 3612 4.278170 CCTTAGTGTTTTCATGTCTGGCAA 59.722 41.667 0.00 0.00 0.00 4.52
2989 3613 5.221224 CCTTAGTGTTTTCATGTCTGGCAAA 60.221 40.000 0.00 0.00 0.00 3.68
2990 3614 4.045636 AGTGTTTTCATGTCTGGCAAAC 57.954 40.909 0.00 0.00 31.62 2.93
2991 3615 3.446873 AGTGTTTTCATGTCTGGCAAACA 59.553 39.130 0.00 0.00 35.42 2.83
2992 3616 4.099881 AGTGTTTTCATGTCTGGCAAACAT 59.900 37.500 0.00 0.00 37.81 2.71
2996 3620 0.533491 CATGTCTGGCAAACATGGGG 59.467 55.000 23.18 0.94 46.58 4.96
2997 3621 0.409092 ATGTCTGGCAAACATGGGGA 59.591 50.000 5.48 0.00 36.04 4.81
2998 3622 0.187117 TGTCTGGCAAACATGGGGAA 59.813 50.000 0.00 0.00 0.00 3.97
2999 3623 0.603065 GTCTGGCAAACATGGGGAAC 59.397 55.000 0.00 0.00 0.00 3.62
3000 3624 0.482446 TCTGGCAAACATGGGGAACT 59.518 50.000 0.00 0.00 0.00 3.01
3001 3625 1.707989 TCTGGCAAACATGGGGAACTA 59.292 47.619 0.00 0.00 0.00 2.24
3002 3626 2.311542 TCTGGCAAACATGGGGAACTAT 59.688 45.455 0.00 0.00 0.00 2.12
3003 3627 2.689983 CTGGCAAACATGGGGAACTATC 59.310 50.000 0.00 0.00 0.00 2.08
3004 3628 2.311542 TGGCAAACATGGGGAACTATCT 59.688 45.455 0.00 0.00 0.00 1.98
3005 3629 3.245586 TGGCAAACATGGGGAACTATCTT 60.246 43.478 0.00 0.00 0.00 2.40
3006 3630 3.381590 GGCAAACATGGGGAACTATCTTC 59.618 47.826 0.00 0.00 0.00 2.87
3007 3631 3.065371 GCAAACATGGGGAACTATCTTCG 59.935 47.826 0.00 0.00 0.00 3.79
3008 3632 4.261801 CAAACATGGGGAACTATCTTCGT 58.738 43.478 0.00 0.00 0.00 3.85
3009 3633 5.424757 CAAACATGGGGAACTATCTTCGTA 58.575 41.667 0.00 0.00 0.00 3.43
3010 3634 5.888982 AACATGGGGAACTATCTTCGTAT 57.111 39.130 0.00 0.00 0.00 3.06
3011 3635 5.470047 ACATGGGGAACTATCTTCGTATC 57.530 43.478 0.00 0.00 0.00 2.24
3012 3636 4.899457 ACATGGGGAACTATCTTCGTATCA 59.101 41.667 0.00 0.00 0.00 2.15
3013 3637 5.365605 ACATGGGGAACTATCTTCGTATCAA 59.634 40.000 0.00 0.00 0.00 2.57
3014 3638 6.043243 ACATGGGGAACTATCTTCGTATCAAT 59.957 38.462 0.00 0.00 0.00 2.57
3015 3639 7.234782 ACATGGGGAACTATCTTCGTATCAATA 59.765 37.037 0.00 0.00 0.00 1.90
3016 3640 7.792364 TGGGGAACTATCTTCGTATCAATAT 57.208 36.000 0.00 0.00 0.00 1.28
3017 3641 8.888836 TGGGGAACTATCTTCGTATCAATATA 57.111 34.615 0.00 0.00 0.00 0.86
3018 3642 9.488762 TGGGGAACTATCTTCGTATCAATATAT 57.511 33.333 0.00 0.00 0.00 0.86
3019 3643 9.968870 GGGGAACTATCTTCGTATCAATATATC 57.031 37.037 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.741985 TGACTCGCCGGTGCATTG 60.742 61.111 11.05 2.89 37.32 2.82
1 2 2.742372 GTGACTCGCCGGTGCATT 60.742 61.111 11.05 0.00 37.32 3.56
14 15 4.741781 AAATGCAGCGCGCGTGAC 62.742 61.111 32.35 20.33 46.97 3.67
15 16 3.534970 AAAAATGCAGCGCGCGTGA 62.535 52.632 32.35 13.71 46.97 4.35
16 17 3.098958 AAAAATGCAGCGCGCGTG 61.099 55.556 32.35 26.47 46.97 5.34
17 18 3.098958 CAAAAATGCAGCGCGCGT 61.099 55.556 32.35 15.53 46.97 6.01
18 19 4.473066 GCAAAAATGCAGCGCGCG 62.473 61.111 28.44 28.44 46.97 6.86
19 20 4.473066 CGCAAAAATGCAGCGCGC 62.473 61.111 26.66 26.66 45.14 6.86
23 24 3.107661 AGCGCGCAAAAATGCAGC 61.108 55.556 35.10 9.33 38.02 5.25
24 25 2.767059 CAGCGCGCAAAAATGCAG 59.233 55.556 35.10 6.98 34.41 4.41
25 26 3.404707 GCAGCGCGCAAAAATGCA 61.405 55.556 35.10 0.00 41.79 3.96
26 27 3.107661 AGCAGCGCGCAAAAATGC 61.108 55.556 35.10 31.28 46.13 3.56
27 28 2.722731 CCAGCAGCGCGCAAAAATG 61.723 57.895 35.10 23.04 46.13 2.32
28 29 2.431260 CCAGCAGCGCGCAAAAAT 60.431 55.556 35.10 9.38 46.13 1.82
29 30 3.541093 CTCCAGCAGCGCGCAAAAA 62.541 57.895 35.10 12.17 46.13 1.94
30 31 4.029186 CTCCAGCAGCGCGCAAAA 62.029 61.111 35.10 11.03 46.13 2.44
97 98 3.262142 ATCGTTTGGTTTGGCGCGG 62.262 57.895 8.83 0.00 0.00 6.46
98 99 2.080062 CATCGTTTGGTTTGGCGCG 61.080 57.895 0.00 0.00 0.00 6.86
99 100 2.371923 GCATCGTTTGGTTTGGCGC 61.372 57.895 0.00 0.00 0.00 6.53
100 101 2.080062 CGCATCGTTTGGTTTGGCG 61.080 57.895 0.00 0.00 36.93 5.69
101 102 2.371923 GCGCATCGTTTGGTTTGGC 61.372 57.895 0.30 0.00 0.00 4.52
102 103 0.388391 ATGCGCATCGTTTGGTTTGG 60.388 50.000 19.28 0.00 0.00 3.28
103 104 0.709467 CATGCGCATCGTTTGGTTTG 59.291 50.000 22.51 2.38 0.00 2.93
104 105 1.008361 GCATGCGCATCGTTTGGTTT 61.008 50.000 22.51 0.00 38.36 3.27
105 106 1.444212 GCATGCGCATCGTTTGGTT 60.444 52.632 22.51 0.00 38.36 3.67
106 107 2.179018 GCATGCGCATCGTTTGGT 59.821 55.556 22.51 0.00 38.36 3.67
107 108 2.178769 TGCATGCGCATCGTTTGG 59.821 55.556 22.51 9.52 45.36 3.28
116 117 3.688136 CAGATTTGCTGCATGCGC 58.312 55.556 22.12 22.12 46.63 6.09
151 152 3.423154 CTTCAACAGGCGCCGGAC 61.423 66.667 33.66 2.83 0.00 4.79
152 153 2.954684 ATCTTCAACAGGCGCCGGA 61.955 57.895 33.66 20.19 0.00 5.14
153 154 2.436646 ATCTTCAACAGGCGCCGG 60.437 61.111 25.72 25.72 0.00 6.13
154 155 2.787249 CATCTTCAACAGGCGCCG 59.213 61.111 23.20 18.60 0.00 6.46
155 156 1.986575 GAGCATCTTCAACAGGCGCC 61.987 60.000 21.89 21.89 0.00 6.53
156 157 1.427020 GAGCATCTTCAACAGGCGC 59.573 57.895 0.00 0.00 0.00 6.53
168 169 7.548967 AGGTTACAGTAAGAGTTAAGAGCATC 58.451 38.462 0.00 0.00 0.00 3.91
169 170 7.483580 AGGTTACAGTAAGAGTTAAGAGCAT 57.516 36.000 0.00 0.00 0.00 3.79
170 171 6.912951 AGGTTACAGTAAGAGTTAAGAGCA 57.087 37.500 0.00 0.00 0.00 4.26
171 172 7.376615 TGAAGGTTACAGTAAGAGTTAAGAGC 58.623 38.462 0.00 0.00 0.00 4.09
172 173 8.578151 ACTGAAGGTTACAGTAAGAGTTAAGAG 58.422 37.037 0.00 0.00 45.10 2.85
173 174 8.358148 CACTGAAGGTTACAGTAAGAGTTAAGA 58.642 37.037 0.00 0.00 45.15 2.10
174 175 7.116519 GCACTGAAGGTTACAGTAAGAGTTAAG 59.883 40.741 0.00 0.00 45.15 1.85
192 193 2.789917 GCTGATGCCGCACTGAAG 59.210 61.111 0.00 0.00 0.00 3.02
217 218 5.287170 TCAACATCAGCTTCTGAATTTCG 57.713 39.130 0.27 0.00 44.04 3.46
233 234 4.275810 ACAATAGCTGGCTTGATCAACAT 58.724 39.130 3.38 0.00 0.00 2.71
234 235 3.689347 ACAATAGCTGGCTTGATCAACA 58.311 40.909 3.38 1.10 0.00 3.33
242 243 0.034089 GGTGGGACAATAGCTGGCTT 60.034 55.000 0.00 0.00 44.16 4.35
243 244 1.609783 GGTGGGACAATAGCTGGCT 59.390 57.895 0.00 0.00 44.16 4.75
294 297 4.515567 CACTTAGTTCCAACCAAGGACTTC 59.484 45.833 3.22 0.00 37.42 3.01
401 404 1.405933 GGTTTCAATGGAGCAATGGGC 60.406 52.381 0.00 0.00 45.30 5.36
405 408 2.749621 GACGAGGTTTCAATGGAGCAAT 59.250 45.455 0.00 0.00 0.00 3.56
406 409 2.151202 GACGAGGTTTCAATGGAGCAA 58.849 47.619 0.00 0.00 0.00 3.91
483 486 8.986477 AATGCTGTAGAATATGTTGGTTTTTC 57.014 30.769 0.00 0.00 0.00 2.29
488 491 7.779798 ACCAATAATGCTGTAGAATATGTTGGT 59.220 33.333 9.15 9.15 39.47 3.67
490 493 8.292448 GGACCAATAATGCTGTAGAATATGTTG 58.708 37.037 0.00 0.00 0.00 3.33
491 494 8.220559 AGGACCAATAATGCTGTAGAATATGTT 58.779 33.333 0.00 0.00 0.00 2.71
492 495 7.749666 AGGACCAATAATGCTGTAGAATATGT 58.250 34.615 0.00 0.00 0.00 2.29
497 500 7.801104 TGATAAGGACCAATAATGCTGTAGAA 58.199 34.615 0.00 0.00 0.00 2.10
500 503 7.373617 TCTGATAAGGACCAATAATGCTGTA 57.626 36.000 0.00 0.00 0.00 2.74
512 515 7.309770 AGGAGTAATGAATCTGATAAGGACC 57.690 40.000 0.00 0.00 0.00 4.46
513 516 7.172361 GCAAGGAGTAATGAATCTGATAAGGAC 59.828 40.741 0.00 0.00 0.00 3.85
515 518 6.146837 CGCAAGGAGTAATGAATCTGATAAGG 59.853 42.308 0.00 0.00 0.00 2.69
516 519 6.703607 ACGCAAGGAGTAATGAATCTGATAAG 59.296 38.462 0.00 0.00 46.39 1.73
517 520 6.479990 CACGCAAGGAGTAATGAATCTGATAA 59.520 38.462 0.00 0.00 46.39 1.75
518 521 5.985530 CACGCAAGGAGTAATGAATCTGATA 59.014 40.000 0.00 0.00 46.39 2.15
519 522 4.813161 CACGCAAGGAGTAATGAATCTGAT 59.187 41.667 0.00 0.00 46.39 2.90
524 527 2.643551 CCCACGCAAGGAGTAATGAAT 58.356 47.619 0.00 0.00 46.39 2.57
664 1014 3.455910 TCCTCATCCTGATCCAATCGTTT 59.544 43.478 0.00 0.00 0.00 3.60
682 1032 5.538433 AGAGGCAAGTGTAGATAGATTCCTC 59.462 44.000 0.00 0.00 37.29 3.71
725 1075 2.009051 CAAGCAACATGGCGTAGATGA 58.991 47.619 0.00 0.00 39.27 2.92
775 1125 2.221169 GAATATGCCGCTGGTTGATCA 58.779 47.619 0.00 0.00 0.00 2.92
785 1135 0.517316 GATCGGTTGGAATATGCCGC 59.483 55.000 0.00 0.00 43.45 6.53
859 1212 9.096823 ACAATATATGGTACTAATTCCTCGGAA 57.903 33.333 0.11 0.11 38.59 4.30
861 1214 9.798994 GTACAATATATGGTACTAATTCCTCGG 57.201 37.037 19.36 0.00 37.48 4.63
877 1230 9.903682 ACGCGACAAGTTTATAGTACAATATAT 57.096 29.630 15.93 0.00 0.00 0.86
878 1231 9.172820 CACGCGACAAGTTTATAGTACAATATA 57.827 33.333 15.93 0.00 0.00 0.86
879 1232 7.703621 ACACGCGACAAGTTTATAGTACAATAT 59.296 33.333 15.93 0.00 0.00 1.28
880 1233 7.028962 ACACGCGACAAGTTTATAGTACAATA 58.971 34.615 15.93 0.00 0.00 1.90
881 1234 5.865552 ACACGCGACAAGTTTATAGTACAAT 59.134 36.000 15.93 0.00 0.00 2.71
882 1235 5.221880 ACACGCGACAAGTTTATAGTACAA 58.778 37.500 15.93 0.00 0.00 2.41
883 1236 4.797471 ACACGCGACAAGTTTATAGTACA 58.203 39.130 15.93 0.00 0.00 2.90
884 1237 5.752098 AACACGCGACAAGTTTATAGTAC 57.248 39.130 15.93 0.00 0.00 2.73
885 1238 6.377780 TGTAACACGCGACAAGTTTATAGTA 58.622 36.000 15.93 0.00 0.00 1.82
886 1239 5.221880 TGTAACACGCGACAAGTTTATAGT 58.778 37.500 15.93 0.00 0.00 2.12
887 1240 5.750484 TGTAACACGCGACAAGTTTATAG 57.250 39.130 15.93 0.00 0.00 1.31
893 1246 2.143008 TCATGTAACACGCGACAAGT 57.857 45.000 15.93 2.29 0.00 3.16
907 1260 5.410439 GGGACGTAATGTAACAACTTCATGT 59.590 40.000 0.00 0.00 34.24 3.21
943 1296 3.565905 AGGACGACGTAAGGTAACAAG 57.434 47.619 0.00 0.00 46.39 3.16
1042 1407 1.594310 GGCGAGGAGAGAAAGCAGT 59.406 57.895 0.00 0.00 0.00 4.40
1131 1500 9.631452 GATCTACAGATCGTAAAATCATCATCA 57.369 33.333 3.56 0.00 41.15 3.07
1158 1527 9.831737 CCTAACTTTGAAATCTGTACAAGAATG 57.168 33.333 0.00 0.00 38.79 2.67
1174 1568 5.550403 AGGAATCAGGTAACCCTAACTTTGA 59.450 40.000 0.00 0.00 39.89 2.69
1250 1654 3.767673 CCAGGCCACTAGAAAGTACAGTA 59.232 47.826 5.01 0.00 33.48 2.74
1251 1655 2.567615 CCAGGCCACTAGAAAGTACAGT 59.432 50.000 5.01 0.00 33.48 3.55
1252 1656 2.093447 CCCAGGCCACTAGAAAGTACAG 60.093 54.545 5.01 0.00 33.48 2.74
1253 1657 1.906574 CCCAGGCCACTAGAAAGTACA 59.093 52.381 5.01 0.00 33.48 2.90
1254 1658 1.907255 ACCCAGGCCACTAGAAAGTAC 59.093 52.381 5.01 0.00 33.48 2.73
1903 2309 3.750371 ACGGGTGTTCAATCAGAATTCA 58.250 40.909 8.44 0.00 38.76 2.57
2001 2407 2.125269 GTAATCCACCCGCGCACT 60.125 61.111 8.75 0.00 0.00 4.40
2043 2449 5.949735 ACGGCATTTTAACTGAACCAATAG 58.050 37.500 0.00 0.00 0.00 1.73
2183 2592 6.088085 GCGACATACTTTGTTTCATCTTTTGG 59.912 38.462 0.00 0.00 39.18 3.28
2198 2607 0.796312 CAAAGTGCCGCGACATACTT 59.204 50.000 8.23 9.50 35.06 2.24
2207 2616 2.187599 ATCGCAACTCAAAGTGCCGC 62.188 55.000 0.00 0.00 0.00 6.53
2223 2632 8.116136 TCATCTCATCGAAACAACAAAATATCG 58.884 33.333 0.00 0.00 0.00 2.92
2574 2983 6.412732 GGGGAGGGGAGATTTATTAAATCCAA 60.413 42.308 20.47 0.00 46.65 3.53
2575 2984 5.075900 GGGGAGGGGAGATTTATTAAATCCA 59.924 44.000 20.47 0.00 46.65 3.41
2582 2991 2.940011 AGGGGGAGGGGAGATTTATT 57.060 50.000 0.00 0.00 0.00 1.40
2584 2993 2.322855 TGTTAGGGGGAGGGGAGATTTA 59.677 50.000 0.00 0.00 0.00 1.40
2585 2994 1.083912 TGTTAGGGGGAGGGGAGATTT 59.916 52.381 0.00 0.00 0.00 2.17
2588 2997 0.728843 AATGTTAGGGGGAGGGGAGA 59.271 55.000 0.00 0.00 0.00 3.71
2589 2998 1.608425 AAATGTTAGGGGGAGGGGAG 58.392 55.000 0.00 0.00 0.00 4.30
2590 2999 2.995765 TAAATGTTAGGGGGAGGGGA 57.004 50.000 0.00 0.00 0.00 4.81
2591 3000 3.591977 CCTATAAATGTTAGGGGGAGGGG 59.408 52.174 0.00 0.00 33.86 4.79
2592 3001 4.288887 GTCCTATAAATGTTAGGGGGAGGG 59.711 50.000 0.00 0.00 37.42 4.30
2593 3002 4.020485 CGTCCTATAAATGTTAGGGGGAGG 60.020 50.000 0.00 0.00 37.42 4.30
2594 3003 4.591924 ACGTCCTATAAATGTTAGGGGGAG 59.408 45.833 0.00 0.00 37.42 4.30
2595 3004 4.345837 CACGTCCTATAAATGTTAGGGGGA 59.654 45.833 0.00 0.00 37.42 4.81
2596 3005 4.102054 ACACGTCCTATAAATGTTAGGGGG 59.898 45.833 0.00 0.00 37.42 5.40
2597 3006 5.286267 ACACGTCCTATAAATGTTAGGGG 57.714 43.478 0.00 0.00 37.42 4.79
2598 3007 5.295152 GGACACGTCCTATAAATGTTAGGG 58.705 45.833 9.04 0.00 46.16 3.53
2613 3022 0.462789 ACATTATCCGGGGACACGTC 59.537 55.000 0.00 0.00 0.00 4.34
2614 3023 0.462789 GACATTATCCGGGGACACGT 59.537 55.000 0.00 0.00 0.00 4.49
2615 3024 0.596600 CGACATTATCCGGGGACACG 60.597 60.000 0.00 0.00 0.00 4.49
2616 3025 0.249741 CCGACATTATCCGGGGACAC 60.250 60.000 0.00 0.00 41.89 3.67
2617 3026 0.397394 TCCGACATTATCCGGGGACA 60.397 55.000 0.00 0.00 45.36 4.02
2618 3027 0.033090 GTCCGACATTATCCGGGGAC 59.967 60.000 0.00 3.78 45.36 4.46
2619 3028 1.457823 CGTCCGACATTATCCGGGGA 61.458 60.000 0.00 0.00 45.36 4.81
2620 3029 1.006571 CGTCCGACATTATCCGGGG 60.007 63.158 0.00 0.00 45.36 5.73
2621 3030 0.318445 GTCGTCCGACATTATCCGGG 60.318 60.000 14.48 0.00 45.36 5.73
2622 3031 0.318445 GGTCGTCCGACATTATCCGG 60.318 60.000 20.10 0.00 46.20 5.14
2623 3032 0.318445 GGGTCGTCCGACATTATCCG 60.318 60.000 20.10 0.00 46.20 4.18
2639 3263 1.282157 GGTTGAGCACTTATGAGGGGT 59.718 52.381 0.00 0.00 40.39 4.95
2641 3265 3.012518 CAAGGTTGAGCACTTATGAGGG 58.987 50.000 0.00 0.00 0.00 4.30
2686 3310 2.270205 CCGGCCATGAAGAGCAGT 59.730 61.111 2.24 0.00 0.00 4.40
2708 3332 1.346395 AGACACTTGCCGTTACATCCA 59.654 47.619 0.00 0.00 0.00 3.41
2796 3420 0.656259 GCGGGGCGAAAGTCTATTTC 59.344 55.000 0.00 0.00 34.89 2.17
2797 3421 0.252197 AGCGGGGCGAAAGTCTATTT 59.748 50.000 0.00 0.00 34.89 1.40
2798 3422 0.252197 AAGCGGGGCGAAAGTCTATT 59.748 50.000 0.00 0.00 34.89 1.73
2799 3423 0.252197 AAAGCGGGGCGAAAGTCTAT 59.748 50.000 0.00 0.00 34.89 1.98
2800 3424 0.896923 TAAAGCGGGGCGAAAGTCTA 59.103 50.000 0.00 0.00 34.89 2.59
2801 3425 0.252197 ATAAAGCGGGGCGAAAGTCT 59.748 50.000 0.00 0.00 34.89 3.24
2802 3426 1.944032 TATAAAGCGGGGCGAAAGTC 58.056 50.000 0.00 0.00 0.00 3.01
2803 3427 2.406596 TTATAAAGCGGGGCGAAAGT 57.593 45.000 0.00 0.00 0.00 2.66
2804 3428 2.681344 AGTTTATAAAGCGGGGCGAAAG 59.319 45.455 0.00 0.00 0.00 2.62
2805 3429 2.713877 AGTTTATAAAGCGGGGCGAAA 58.286 42.857 0.00 0.00 0.00 3.46
2806 3430 2.406596 AGTTTATAAAGCGGGGCGAA 57.593 45.000 0.00 0.00 0.00 4.70
2807 3431 2.694628 TCTAGTTTATAAAGCGGGGCGA 59.305 45.455 0.00 0.00 0.00 5.54
2808 3432 3.102052 TCTAGTTTATAAAGCGGGGCG 57.898 47.619 0.00 0.00 0.00 6.13
2809 3433 4.638304 TCATCTAGTTTATAAAGCGGGGC 58.362 43.478 0.00 0.00 0.00 5.80
2810 3434 5.122396 GCATCATCTAGTTTATAAAGCGGGG 59.878 44.000 0.00 0.00 0.00 5.73
2811 3435 5.122396 GGCATCATCTAGTTTATAAAGCGGG 59.878 44.000 0.00 0.00 0.00 6.13
2812 3436 5.122396 GGGCATCATCTAGTTTATAAAGCGG 59.878 44.000 0.00 0.00 0.00 5.52
2813 3437 5.122396 GGGGCATCATCTAGTTTATAAAGCG 59.878 44.000 0.00 0.00 0.00 4.68
2814 3438 5.122396 CGGGGCATCATCTAGTTTATAAAGC 59.878 44.000 0.00 0.00 0.00 3.51
2815 3439 5.122396 GCGGGGCATCATCTAGTTTATAAAG 59.878 44.000 0.00 0.00 0.00 1.85
2816 3440 5.001232 GCGGGGCATCATCTAGTTTATAAA 58.999 41.667 0.00 0.00 0.00 1.40
2817 3441 4.575885 GCGGGGCATCATCTAGTTTATAA 58.424 43.478 0.00 0.00 0.00 0.98
2818 3442 3.368013 CGCGGGGCATCATCTAGTTTATA 60.368 47.826 0.00 0.00 0.00 0.98
2819 3443 2.612972 CGCGGGGCATCATCTAGTTTAT 60.613 50.000 0.00 0.00 0.00 1.40
2820 3444 1.270094 CGCGGGGCATCATCTAGTTTA 60.270 52.381 0.00 0.00 0.00 2.01
2821 3445 0.532862 CGCGGGGCATCATCTAGTTT 60.533 55.000 0.00 0.00 0.00 2.66
2822 3446 1.069765 CGCGGGGCATCATCTAGTT 59.930 57.895 0.00 0.00 0.00 2.24
2823 3447 2.737180 CGCGGGGCATCATCTAGT 59.263 61.111 0.00 0.00 0.00 2.57
2824 3448 2.740055 GCGCGGGGCATCATCTAG 60.740 66.667 8.83 0.00 42.87 2.43
2825 3449 4.662961 CGCGCGGGGCATCATCTA 62.663 66.667 24.84 0.00 43.84 1.98
2842 3466 0.802494 CACCAATGTCCCGTAGCAAC 59.198 55.000 0.00 0.00 0.00 4.17
2843 3467 0.958382 GCACCAATGTCCCGTAGCAA 60.958 55.000 0.00 0.00 0.00 3.91
2844 3468 1.376683 GCACCAATGTCCCGTAGCA 60.377 57.895 0.00 0.00 0.00 3.49
2845 3469 2.461110 CGCACCAATGTCCCGTAGC 61.461 63.158 0.00 0.00 0.00 3.58
2846 3470 1.813753 CCGCACCAATGTCCCGTAG 60.814 63.158 0.00 0.00 0.00 3.51
2847 3471 2.266372 CCGCACCAATGTCCCGTA 59.734 61.111 0.00 0.00 0.00 4.02
2848 3472 4.715523 CCCGCACCAATGTCCCGT 62.716 66.667 0.00 0.00 0.00 5.28
2849 3473 2.318519 TATCCCGCACCAATGTCCCG 62.319 60.000 0.00 0.00 0.00 5.14
2850 3474 0.818040 GTATCCCGCACCAATGTCCC 60.818 60.000 0.00 0.00 0.00 4.46
2851 3475 0.818040 GGTATCCCGCACCAATGTCC 60.818 60.000 0.00 0.00 36.01 4.02
2852 3476 0.107410 TGGTATCCCGCACCAATGTC 60.107 55.000 0.00 0.00 43.08 3.06
2853 3477 1.995274 TGGTATCCCGCACCAATGT 59.005 52.632 0.00 0.00 43.08 2.71
2854 3478 4.975132 TGGTATCCCGCACCAATG 57.025 55.556 0.00 0.00 43.08 2.82
2858 3482 4.929819 AAAAATAATGGTATCCCGCACC 57.070 40.909 0.00 0.00 36.54 5.01
2876 3500 9.801873 GTTTCATGCTAATATGCTTAGGAAAAA 57.198 29.630 0.00 0.00 0.00 1.94
2877 3501 8.965819 TGTTTCATGCTAATATGCTTAGGAAAA 58.034 29.630 0.00 0.00 0.00 2.29
2878 3502 8.518430 TGTTTCATGCTAATATGCTTAGGAAA 57.482 30.769 0.00 0.00 0.00 3.13
2879 3503 8.570488 CATGTTTCATGCTAATATGCTTAGGAA 58.430 33.333 0.00 0.00 0.00 3.36
2880 3504 7.720957 ACATGTTTCATGCTAATATGCTTAGGA 59.279 33.333 9.27 0.00 30.10 2.94
2881 3505 7.879070 ACATGTTTCATGCTAATATGCTTAGG 58.121 34.615 9.27 0.00 30.10 2.69
2882 3506 8.562052 TGACATGTTTCATGCTAATATGCTTAG 58.438 33.333 0.00 0.00 30.10 2.18
2883 3507 8.449251 TGACATGTTTCATGCTAATATGCTTA 57.551 30.769 0.00 0.00 30.10 3.09
2884 3508 7.283807 TCTGACATGTTTCATGCTAATATGCTT 59.716 33.333 0.00 1.12 30.10 3.91
2885 3509 6.769341 TCTGACATGTTTCATGCTAATATGCT 59.231 34.615 0.00 5.29 30.10 3.79
2886 3510 6.962686 TCTGACATGTTTCATGCTAATATGC 58.037 36.000 0.00 9.07 30.10 3.14
2887 3511 8.780249 TCATCTGACATGTTTCATGCTAATATG 58.220 33.333 0.00 12.35 32.40 1.78
2888 3512 8.913487 TCATCTGACATGTTTCATGCTAATAT 57.087 30.769 0.00 0.00 0.00 1.28
2889 3513 8.735692 TTCATCTGACATGTTTCATGCTAATA 57.264 30.769 0.00 0.00 0.00 0.98
2890 3514 7.634671 TTCATCTGACATGTTTCATGCTAAT 57.365 32.000 0.00 0.00 0.00 1.73
2891 3515 7.362315 CCTTTCATCTGACATGTTTCATGCTAA 60.362 37.037 0.00 0.81 0.00 3.09
2892 3516 6.094464 CCTTTCATCTGACATGTTTCATGCTA 59.906 38.462 0.00 0.00 0.00 3.49
2893 3517 5.105877 CCTTTCATCTGACATGTTTCATGCT 60.106 40.000 0.00 0.00 0.00 3.79
2894 3518 5.100259 CCTTTCATCTGACATGTTTCATGC 58.900 41.667 0.00 4.14 0.00 4.06
2895 3519 5.100259 GCCTTTCATCTGACATGTTTCATG 58.900 41.667 0.00 7.99 0.00 3.07
2896 3520 4.142534 CGCCTTTCATCTGACATGTTTCAT 60.143 41.667 0.00 0.00 0.00 2.57
2897 3521 3.189080 CGCCTTTCATCTGACATGTTTCA 59.811 43.478 0.00 0.00 0.00 2.69
2898 3522 3.436704 TCGCCTTTCATCTGACATGTTTC 59.563 43.478 0.00 0.00 0.00 2.78
2899 3523 3.411446 TCGCCTTTCATCTGACATGTTT 58.589 40.909 0.00 0.00 0.00 2.83
2900 3524 3.057969 TCGCCTTTCATCTGACATGTT 57.942 42.857 0.00 0.00 0.00 2.71
2901 3525 2.768253 TCGCCTTTCATCTGACATGT 57.232 45.000 0.00 0.00 0.00 3.21
2902 3526 4.627611 AATTCGCCTTTCATCTGACATG 57.372 40.909 0.00 0.00 0.00 3.21
2903 3527 5.647658 TGTTAATTCGCCTTTCATCTGACAT 59.352 36.000 0.00 0.00 0.00 3.06
2904 3528 5.000591 TGTTAATTCGCCTTTCATCTGACA 58.999 37.500 0.00 0.00 0.00 3.58
2905 3529 5.545658 TGTTAATTCGCCTTTCATCTGAC 57.454 39.130 0.00 0.00 0.00 3.51
2906 3530 5.705441 AGTTGTTAATTCGCCTTTCATCTGA 59.295 36.000 0.00 0.00 0.00 3.27
2907 3531 5.796935 CAGTTGTTAATTCGCCTTTCATCTG 59.203 40.000 0.00 0.00 0.00 2.90
2908 3532 5.106157 CCAGTTGTTAATTCGCCTTTCATCT 60.106 40.000 0.00 0.00 0.00 2.90
2909 3533 5.095490 CCAGTTGTTAATTCGCCTTTCATC 58.905 41.667 0.00 0.00 0.00 2.92
2910 3534 4.522789 ACCAGTTGTTAATTCGCCTTTCAT 59.477 37.500 0.00 0.00 0.00 2.57
2911 3535 3.886505 ACCAGTTGTTAATTCGCCTTTCA 59.113 39.130 0.00 0.00 0.00 2.69
2912 3536 4.499037 ACCAGTTGTTAATTCGCCTTTC 57.501 40.909 0.00 0.00 0.00 2.62
2913 3537 5.067954 ACTACCAGTTGTTAATTCGCCTTT 58.932 37.500 0.00 0.00 0.00 3.11
2914 3538 4.648651 ACTACCAGTTGTTAATTCGCCTT 58.351 39.130 0.00 0.00 0.00 4.35
2915 3539 4.281898 ACTACCAGTTGTTAATTCGCCT 57.718 40.909 0.00 0.00 0.00 5.52
2927 3551 8.863872 ATTTCAATTACTAGCAACTACCAGTT 57.136 30.769 0.00 0.00 39.39 3.16
2947 3571 9.357161 ACACTAAGGGTTTGTTGTTATATTTCA 57.643 29.630 0.00 0.00 0.00 2.69
2952 3576 9.186837 TGAAAACACTAAGGGTTTGTTGTTATA 57.813 29.630 0.00 0.00 38.40 0.98
2953 3577 8.068892 TGAAAACACTAAGGGTTTGTTGTTAT 57.931 30.769 0.00 0.00 38.40 1.89
2954 3578 7.463961 TGAAAACACTAAGGGTTTGTTGTTA 57.536 32.000 0.00 0.00 38.40 2.41
2955 3579 6.347859 TGAAAACACTAAGGGTTTGTTGTT 57.652 33.333 0.00 0.00 38.40 2.83
2956 3580 5.986501 TGAAAACACTAAGGGTTTGTTGT 57.013 34.783 0.00 0.00 38.40 3.32
2957 3581 6.337356 ACATGAAAACACTAAGGGTTTGTTG 58.663 36.000 0.00 2.33 38.40 3.33
2958 3582 6.379988 AGACATGAAAACACTAAGGGTTTGTT 59.620 34.615 0.00 0.00 38.40 2.83
2959 3583 5.891551 AGACATGAAAACACTAAGGGTTTGT 59.108 36.000 0.00 0.00 38.40 2.83
2960 3584 6.208644 CAGACATGAAAACACTAAGGGTTTG 58.791 40.000 0.00 0.00 38.40 2.93
2961 3585 5.301805 CCAGACATGAAAACACTAAGGGTTT 59.698 40.000 0.00 0.00 39.99 3.27
2962 3586 4.827284 CCAGACATGAAAACACTAAGGGTT 59.173 41.667 0.00 0.00 0.00 4.11
2963 3587 4.398319 CCAGACATGAAAACACTAAGGGT 58.602 43.478 0.00 0.00 0.00 4.34
2964 3588 3.191371 GCCAGACATGAAAACACTAAGGG 59.809 47.826 0.00 0.00 0.00 3.95
2965 3589 3.820467 TGCCAGACATGAAAACACTAAGG 59.180 43.478 0.00 0.00 0.00 2.69
2966 3590 5.437289 TTGCCAGACATGAAAACACTAAG 57.563 39.130 0.00 0.00 0.00 2.18
2967 3591 5.126222 TGTTTGCCAGACATGAAAACACTAA 59.874 36.000 0.00 0.00 37.62 2.24
2968 3592 4.642437 TGTTTGCCAGACATGAAAACACTA 59.358 37.500 0.00 0.00 37.62 2.74
2969 3593 3.446873 TGTTTGCCAGACATGAAAACACT 59.553 39.130 0.00 0.00 37.62 3.55
2970 3594 3.779759 TGTTTGCCAGACATGAAAACAC 58.220 40.909 0.00 0.00 37.62 3.32
2971 3595 4.669206 ATGTTTGCCAGACATGAAAACA 57.331 36.364 0.00 6.84 42.15 2.83
2978 3602 0.409092 TCCCCATGTTTGCCAGACAT 59.591 50.000 0.00 0.00 38.21 3.06
2979 3603 0.187117 TTCCCCATGTTTGCCAGACA 59.813 50.000 0.00 0.00 0.00 3.41
2980 3604 0.603065 GTTCCCCATGTTTGCCAGAC 59.397 55.000 0.00 0.00 0.00 3.51
2981 3605 0.482446 AGTTCCCCATGTTTGCCAGA 59.518 50.000 0.00 0.00 0.00 3.86
2982 3606 2.214376 TAGTTCCCCATGTTTGCCAG 57.786 50.000 0.00 0.00 0.00 4.85
2983 3607 2.311542 AGATAGTTCCCCATGTTTGCCA 59.688 45.455 0.00 0.00 0.00 4.92
2984 3608 3.018423 AGATAGTTCCCCATGTTTGCC 57.982 47.619 0.00 0.00 0.00 4.52
2985 3609 3.065371 CGAAGATAGTTCCCCATGTTTGC 59.935 47.826 0.00 0.00 0.00 3.68
2986 3610 4.261801 ACGAAGATAGTTCCCCATGTTTG 58.738 43.478 0.00 0.00 0.00 2.93
2987 3611 4.569719 ACGAAGATAGTTCCCCATGTTT 57.430 40.909 0.00 0.00 0.00 2.83
2988 3612 5.365605 TGATACGAAGATAGTTCCCCATGTT 59.634 40.000 0.00 0.00 0.00 2.71
2989 3613 4.899457 TGATACGAAGATAGTTCCCCATGT 59.101 41.667 0.00 0.00 0.00 3.21
2990 3614 5.468540 TGATACGAAGATAGTTCCCCATG 57.531 43.478 0.00 0.00 0.00 3.66
2991 3615 6.688073 ATTGATACGAAGATAGTTCCCCAT 57.312 37.500 0.00 0.00 0.00 4.00
2992 3616 7.792364 ATATTGATACGAAGATAGTTCCCCA 57.208 36.000 0.00 0.00 0.00 4.96
2993 3617 9.968870 GATATATTGATACGAAGATAGTTCCCC 57.031 37.037 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.