Multiple sequence alignment - TraesCS2A01G149100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G149100 chr2A 100.000 2599 0 0 1 2599 95824819 95827417 0.000000e+00 4800.0
1 TraesCS2A01G149100 chr2A 82.022 178 28 3 1839 2015 528661695 528661869 5.790000e-32 148.0
2 TraesCS2A01G149100 chr2A 90.625 64 5 1 755 817 589690482 589690419 1.660000e-12 84.2
3 TraesCS2A01G149100 chr2A 92.727 55 4 0 755 809 622855746 622855800 2.140000e-11 80.5
4 TraesCS2A01G149100 chr2D 90.940 2616 136 38 1 2569 96798852 96801413 0.000000e+00 3424.0
5 TraesCS2A01G149100 chr2D 79.389 262 37 8 1841 2089 94386675 94386418 4.450000e-38 169.0
6 TraesCS2A01G149100 chr2D 89.062 64 5 2 414 475 591303885 591303948 7.710000e-11 78.7
7 TraesCS2A01G149100 chr2B 89.449 2123 146 22 474 2569 148143531 148145602 0.000000e+00 2608.0
8 TraesCS2A01G149100 chr2B 92.258 155 9 3 223 375 148143379 148143532 1.570000e-52 217.0
9 TraesCS2A01G149100 chr2B 91.935 62 5 0 146 207 148143018 148143079 1.280000e-13 87.9
10 TraesCS2A01G149100 chr2B 91.525 59 5 0 755 813 68624464 68624406 5.960000e-12 82.4
11 TraesCS2A01G149100 chr2B 90.323 62 5 1 755 815 740807502 740807563 2.140000e-11 80.5
12 TraesCS2A01G149100 chrUn 90.667 150 9 2 1 149 17372537 17372682 7.340000e-46 195.0
13 TraesCS2A01G149100 chrUn 90.667 150 9 2 1 149 272159088 272158943 7.340000e-46 195.0
14 TraesCS2A01G149100 chr3A 79.518 249 39 8 1842 2080 595949795 595949549 1.600000e-37 167.0
15 TraesCS2A01G149100 chr3A 96.226 53 1 1 429 481 647618233 647618284 4.610000e-13 86.1
16 TraesCS2A01G149100 chr1A 79.897 194 36 3 1842 2035 531885630 531885440 3.490000e-29 139.0
17 TraesCS2A01G149100 chr1A 92.727 55 4 0 755 809 138320870 138320924 2.140000e-11 80.5
18 TraesCS2A01G149100 chr1A 81.915 94 11 5 2482 2569 6209059 6208966 9.980000e-10 75.0
19 TraesCS2A01G149100 chr6D 80.000 185 34 2 1841 2025 123159232 123159051 1.620000e-27 134.0
20 TraesCS2A01G149100 chr6B 79.487 195 33 5 1838 2032 137456408 137456595 5.840000e-27 132.0
21 TraesCS2A01G149100 chr6B 80.108 186 30 6 1841 2023 217169260 217169079 5.840000e-27 132.0
22 TraesCS2A01G149100 chr6B 87.324 71 5 3 409 476 718323920 718323989 7.710000e-11 78.7
23 TraesCS2A01G149100 chr3D 81.818 121 11 7 854 963 147461837 147461717 9.900000e-15 91.6
24 TraesCS2A01G149100 chr7D 94.737 57 2 1 426 481 135974729 135974673 1.280000e-13 87.9
25 TraesCS2A01G149100 chr7D 87.671 73 6 3 414 483 415949466 415949538 5.960000e-12 82.4
26 TraesCS2A01G149100 chr4A 96.226 53 1 1 429 481 559503590 559503641 4.610000e-13 86.1
27 TraesCS2A01G149100 chr5A 90.625 64 5 1 755 817 635512504 635512567 1.660000e-12 84.2
28 TraesCS2A01G149100 chr5A 91.525 59 3 2 420 476 680083960 680083902 2.140000e-11 80.5
29 TraesCS2A01G149100 chr7B 86.111 72 8 2 758 827 658355268 658355197 2.770000e-10 76.8
30 TraesCS2A01G149100 chr4D 84.091 88 3 9 390 476 484462794 484462717 9.980000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G149100 chr2A 95824819 95827417 2598 False 4800.000000 4800 100.000 1 2599 1 chr2A.!!$F1 2598
1 TraesCS2A01G149100 chr2D 96798852 96801413 2561 False 3424.000000 3424 90.940 1 2569 1 chr2D.!!$F1 2568
2 TraesCS2A01G149100 chr2B 148143018 148145602 2584 False 970.966667 2608 91.214 146 2569 3 chr2B.!!$F2 2423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1233 1.009829 CCACGAAGCTGACCTAATGC 58.99 55.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2115 0.673644 CACAACCAACCTCCTAGCCG 60.674 60.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.340618 ACGTACTCCAGTCTACTATACAAAAA 57.659 34.615 0.00 0.00 0.00 1.94
26 27 8.239998 ACGTACTCCAGTCTACTATACAAAAAC 58.760 37.037 0.00 0.00 0.00 2.43
76 77 5.419471 TGATTTTCAAGTGATCATGATGGCA 59.581 36.000 14.30 2.61 0.00 4.92
125 127 2.997986 ACACGTCCGCTAATAAACTTGG 59.002 45.455 0.00 0.00 0.00 3.61
126 128 2.997986 CACGTCCGCTAATAAACTTGGT 59.002 45.455 0.00 0.00 0.00 3.67
369 658 4.025647 CCACTGCTAAAATAGAGCGCTAAC 60.026 45.833 11.50 0.00 43.19 2.34
381 670 3.822167 AGAGCGCTAACTATTACTCCCTC 59.178 47.826 11.50 0.00 0.00 4.30
382 671 2.892215 AGCGCTAACTATTACTCCCTCC 59.108 50.000 8.99 0.00 0.00 4.30
383 672 2.626743 GCGCTAACTATTACTCCCTCCA 59.373 50.000 0.00 0.00 0.00 3.86
387 676 5.567025 CGCTAACTATTACTCCCTCCATTCC 60.567 48.000 0.00 0.00 0.00 3.01
391 683 6.652205 ACTATTACTCCCTCCATTCCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
394 686 3.833559 ACTCCCTCCATTCCAAAATGT 57.166 42.857 0.00 0.00 40.63 2.71
397 689 4.202716 ACTCCCTCCATTCCAAAATGTCTT 60.203 41.667 0.00 0.00 40.63 3.01
398 690 5.015178 ACTCCCTCCATTCCAAAATGTCTTA 59.985 40.000 0.00 0.00 40.63 2.10
404 696 8.802267 CCTCCATTCCAAAATGTCTTAACTTTA 58.198 33.333 0.00 0.00 40.63 1.85
466 758 5.183140 AGTTGAGACATTTATTTTGGGACGG 59.817 40.000 0.00 0.00 0.00 4.79
468 760 5.317808 TGAGACATTTATTTTGGGACGGAA 58.682 37.500 0.00 0.00 0.00 4.30
473 765 4.376225 TTTATTTTGGGACGGAAGGAGT 57.624 40.909 0.00 0.00 0.00 3.85
474 766 5.502089 TTTATTTTGGGACGGAAGGAGTA 57.498 39.130 0.00 0.00 0.00 2.59
475 767 2.845363 TTTTGGGACGGAAGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
485 777 5.163437 GGACGGAAGGAGTACTATTTGTCAT 60.163 44.000 18.28 0.00 0.00 3.06
528 820 6.204108 ACAAATGGTGAAAACTAAGTACTCCG 59.796 38.462 0.00 0.00 0.00 4.63
582 874 1.748500 CATGGTGGTACGCATGCCA 60.749 57.895 13.15 2.18 43.02 4.92
613 909 5.817296 TCAGGATATGTCAAACTCCGAATTG 59.183 40.000 0.00 0.00 32.87 2.32
640 936 1.736612 TGTGTGTGTGCATGCGATAT 58.263 45.000 14.09 0.00 0.00 1.63
669 969 6.590292 TCTCTATCAACAAGGAAAAGCTTACG 59.410 38.462 0.00 0.00 0.00 3.18
725 1025 5.220228 GCGTATGAGTGACAGTGTGTATTTC 60.220 44.000 0.00 0.00 0.00 2.17
730 1030 5.036117 AGTGACAGTGTGTATTTCCTTGT 57.964 39.130 0.00 0.00 0.00 3.16
918 1233 1.009829 CCACGAAGCTGACCTAATGC 58.990 55.000 0.00 0.00 0.00 3.56
921 1236 1.203928 CGAAGCTGACCTAATGCTCG 58.796 55.000 0.00 0.00 35.85 5.03
922 1237 1.469940 CGAAGCTGACCTAATGCTCGT 60.470 52.381 0.00 0.00 35.85 4.18
942 1257 1.742768 CTCTATGCACCTCCCCGAC 59.257 63.158 0.00 0.00 0.00 4.79
969 1284 4.270153 TGACCTCCACAGCCCCCT 62.270 66.667 0.00 0.00 0.00 4.79
993 1308 2.750350 CACACACCCCTCACCTCC 59.250 66.667 0.00 0.00 0.00 4.30
994 1309 2.146724 CACACACCCCTCACCTCCA 61.147 63.158 0.00 0.00 0.00 3.86
995 1310 1.843376 ACACACCCCTCACCTCCAG 60.843 63.158 0.00 0.00 0.00 3.86
996 1311 1.843376 CACACCCCTCACCTCCAGT 60.843 63.158 0.00 0.00 0.00 4.00
997 1312 1.073706 ACACCCCTCACCTCCAGTT 60.074 57.895 0.00 0.00 0.00 3.16
998 1313 1.376466 CACCCCTCACCTCCAGTTG 59.624 63.158 0.00 0.00 0.00 3.16
999 1314 1.127567 CACCCCTCACCTCCAGTTGA 61.128 60.000 0.00 0.00 0.00 3.18
1000 1315 1.128188 ACCCCTCACCTCCAGTTGAC 61.128 60.000 0.00 0.00 0.00 3.18
1001 1316 1.127567 CCCCTCACCTCCAGTTGACA 61.128 60.000 0.00 0.00 0.00 3.58
1002 1317 0.035458 CCCTCACCTCCAGTTGACAC 59.965 60.000 0.00 0.00 0.00 3.67
1003 1318 1.051812 CCTCACCTCCAGTTGACACT 58.948 55.000 0.00 0.00 0.00 3.55
1004 1319 2.248248 CCTCACCTCCAGTTGACACTA 58.752 52.381 0.00 0.00 0.00 2.74
1005 1320 2.028930 CCTCACCTCCAGTTGACACTAC 60.029 54.545 0.00 0.00 0.00 2.73
1023 1338 2.376808 ACTGCTCGTCAATCTCAAGG 57.623 50.000 0.00 0.00 0.00 3.61
1088 1403 1.891919 GGTCAGCAGCACCAACGAA 60.892 57.895 0.00 0.00 33.63 3.85
1490 1805 1.155889 CCATGTGTGCGAGTGCTTTA 58.844 50.000 0.00 0.00 43.34 1.85
1718 2049 4.021981 GCTTTCAGGTTGTTGAATAGGCTT 60.022 41.667 0.00 0.00 36.97 4.35
1742 2073 6.913170 TGAGGAAGTCATGAATTTTGTAAGC 58.087 36.000 10.13 0.00 0.00 3.09
1802 2134 0.834687 TCGGCTAGGAGGTTGGTTGT 60.835 55.000 0.00 0.00 0.00 3.32
1820 2152 1.419387 TGTGGTCATGTGTGTGGATCA 59.581 47.619 0.00 0.00 0.00 2.92
1822 2154 2.485426 GTGGTCATGTGTGTGGATCAAG 59.515 50.000 0.00 0.00 0.00 3.02
1859 2191 7.770366 TTTTAATACTCCCTTTGGTCCTTTC 57.230 36.000 0.00 0.00 0.00 2.62
1980 2319 4.497473 TGTGAAAATTAAAGCCACGAGG 57.503 40.909 0.00 0.00 38.23 4.63
2075 2414 7.418378 TCTTATATGGGGAACAAAAATGACCT 58.582 34.615 0.00 0.00 0.00 3.85
2125 2464 4.920640 TTACCGTTTCCAGCAAAATTCA 57.079 36.364 0.00 0.00 0.00 2.57
2265 2604 0.730265 GGACGTGCGCATTGGAATAA 59.270 50.000 15.91 0.00 0.00 1.40
2266 2605 1.333619 GGACGTGCGCATTGGAATAAT 59.666 47.619 15.91 0.00 0.00 1.28
2267 2606 2.546368 GGACGTGCGCATTGGAATAATA 59.454 45.455 15.91 0.00 0.00 0.98
2292 2631 4.685924 TCTTTTAAAAGACCGACGTCAGT 58.314 39.130 23.65 10.79 41.87 3.41
2299 2638 3.103911 CCGACGTCAGTCCGCAAC 61.104 66.667 17.16 0.00 44.28 4.17
2373 2714 6.635030 AAGGGCGGAATTTATTAGCTTAAG 57.365 37.500 0.00 0.00 0.00 1.85
2412 2753 2.511659 ACACACAGAAAGAGCATGCAT 58.488 42.857 21.98 4.82 0.00 3.96
2420 2761 2.814805 AAGAGCATGCATTGGTACCT 57.185 45.000 21.98 0.00 35.82 3.08
2422 2763 1.561076 AGAGCATGCATTGGTACCTGA 59.439 47.619 21.98 1.90 35.82 3.86
2429 2770 2.840038 TGCATTGGTACCTGATCTCTGT 59.160 45.455 14.36 0.00 0.00 3.41
2442 2783 8.765488 ACCTGATCTCTGTATAGATATGATGG 57.235 38.462 0.00 0.00 36.33 3.51
2444 2785 9.590828 CCTGATCTCTGTATAGATATGATGGAT 57.409 37.037 0.00 0.00 36.33 3.41
2463 2804 2.623878 TACGGTCAACACCAACACAT 57.376 45.000 0.00 0.00 44.02 3.21
2506 2847 3.914364 GCTAGCAAAATCAAACAAGACCG 59.086 43.478 10.63 0.00 0.00 4.79
2514 2855 7.526608 CAAAATCAAACAAGACCGAAGCTATA 58.473 34.615 0.00 0.00 0.00 1.31
2520 2861 5.854010 ACAAGACCGAAGCTATATCTTGA 57.146 39.130 25.11 0.00 45.96 3.02
2573 2916 4.300803 TCAAAACAATGATCAACAGCAGC 58.699 39.130 0.00 0.00 0.00 5.25
2574 2917 4.052608 CAAAACAATGATCAACAGCAGCA 58.947 39.130 0.00 0.00 0.00 4.41
2575 2918 3.570926 AACAATGATCAACAGCAGCAG 57.429 42.857 0.00 0.00 0.00 4.24
2576 2919 2.511659 ACAATGATCAACAGCAGCAGT 58.488 42.857 0.00 0.00 0.00 4.40
2577 2920 3.678289 ACAATGATCAACAGCAGCAGTA 58.322 40.909 0.00 0.00 0.00 2.74
2578 2921 3.438087 ACAATGATCAACAGCAGCAGTAC 59.562 43.478 0.00 0.00 0.00 2.73
2579 2922 2.837532 TGATCAACAGCAGCAGTACA 57.162 45.000 0.00 0.00 0.00 2.90
2580 2923 3.124578 TGATCAACAGCAGCAGTACAA 57.875 42.857 0.00 0.00 0.00 2.41
2581 2924 2.807967 TGATCAACAGCAGCAGTACAAC 59.192 45.455 0.00 0.00 0.00 3.32
2582 2925 1.217001 TCAACAGCAGCAGTACAACG 58.783 50.000 0.00 0.00 0.00 4.10
2583 2926 1.202475 TCAACAGCAGCAGTACAACGA 60.202 47.619 0.00 0.00 0.00 3.85
2584 2927 1.193203 CAACAGCAGCAGTACAACGAG 59.807 52.381 0.00 0.00 0.00 4.18
2585 2928 0.673985 ACAGCAGCAGTACAACGAGA 59.326 50.000 0.00 0.00 0.00 4.04
2586 2929 1.068588 ACAGCAGCAGTACAACGAGAA 59.931 47.619 0.00 0.00 0.00 2.87
2587 2930 2.135139 CAGCAGCAGTACAACGAGAAA 58.865 47.619 0.00 0.00 0.00 2.52
2588 2931 2.543848 CAGCAGCAGTACAACGAGAAAA 59.456 45.455 0.00 0.00 0.00 2.29
2589 2932 3.002246 CAGCAGCAGTACAACGAGAAAAA 59.998 43.478 0.00 0.00 0.00 1.94
2590 2933 3.815401 AGCAGCAGTACAACGAGAAAAAT 59.185 39.130 0.00 0.00 0.00 1.82
2591 2934 4.275936 AGCAGCAGTACAACGAGAAAAATT 59.724 37.500 0.00 0.00 0.00 1.82
2592 2935 4.613031 GCAGCAGTACAACGAGAAAAATTC 59.387 41.667 0.00 0.00 0.00 2.17
2593 2936 5.560953 GCAGCAGTACAACGAGAAAAATTCT 60.561 40.000 0.00 0.00 44.21 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.010419 GCCGTTTACATCACGTCCGT 61.010 55.000 0.00 0.00 35.81 4.69
26 27 1.705727 GCCGTTTACATCACGTCCG 59.294 57.895 0.00 0.00 35.81 4.79
177 180 3.057315 AGAAAAGAAACACCCATGCGATG 60.057 43.478 0.00 0.00 0.00 3.84
238 525 4.378046 CCAAACTTCCAATCTTCGTAACCG 60.378 45.833 0.00 0.00 0.00 4.44
243 530 2.582052 TGCCAAACTTCCAATCTTCGT 58.418 42.857 0.00 0.00 0.00 3.85
369 658 7.062957 ACATTTTGGAATGGAGGGAGTAATAG 58.937 38.462 4.39 0.00 45.56 1.73
435 727 9.965824 CCAAAATAAATGTCTCAACTTTGTACT 57.034 29.630 0.00 0.00 0.00 2.73
446 738 5.163652 CCTTCCGTCCCAAAATAAATGTCTC 60.164 44.000 0.00 0.00 0.00 3.36
449 741 4.668636 TCCTTCCGTCCCAAAATAAATGT 58.331 39.130 0.00 0.00 0.00 2.71
452 744 4.376225 ACTCCTTCCGTCCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
460 752 3.450096 ACAAATAGTACTCCTTCCGTCCC 59.550 47.826 0.00 0.00 0.00 4.46
466 758 9.429359 CATCCATATGACAAATAGTACTCCTTC 57.571 37.037 3.65 0.00 34.84 3.46
468 760 8.727100 TCATCCATATGACAAATAGTACTCCT 57.273 34.615 3.65 0.00 37.20 3.69
485 777 4.787135 TTGTGGCCAATAGTCATCCATA 57.213 40.909 7.24 0.00 0.00 2.74
499 791 2.908688 AGTTTTCACCATTTGTGGCC 57.091 45.000 0.00 0.00 45.48 5.36
552 844 1.600636 CACCATGCCCACTCACGTT 60.601 57.895 0.00 0.00 0.00 3.99
557 849 1.449601 CGTACCACCATGCCCACTC 60.450 63.158 0.00 0.00 0.00 3.51
582 874 4.162320 AGTTTGACATATCCTGACGGACAT 59.838 41.667 0.00 0.00 43.51 3.06
613 909 1.157257 TGCACACACACATGACGTCC 61.157 55.000 14.12 0.00 0.00 4.79
640 936 5.867716 GCTTTTCCTTGTTGATAGAGACGTA 59.132 40.000 0.00 0.00 0.00 3.57
669 969 5.924825 ACAAACTAAATCAGAGACACGTACC 59.075 40.000 0.00 0.00 0.00 3.34
747 1047 9.765295 AAGTTAGTATAAAGTTGAGTAGGAGGA 57.235 33.333 0.00 0.00 0.00 3.71
789 1104 4.658063 TCACTCCGACCCAAAATAAATGT 58.342 39.130 0.00 0.00 0.00 2.71
942 1257 3.813443 CTGTGGAGGTCAGAAATATGGG 58.187 50.000 0.00 0.00 35.20 4.00
993 1308 2.287608 TGACGAGCAGTAGTGTCAACTG 60.288 50.000 0.00 0.94 45.80 3.16
994 1309 1.954382 TGACGAGCAGTAGTGTCAACT 59.046 47.619 0.00 0.00 38.32 3.16
995 1310 2.417339 TGACGAGCAGTAGTGTCAAC 57.583 50.000 0.00 0.00 38.32 3.18
997 1312 2.820197 AGATTGACGAGCAGTAGTGTCA 59.180 45.455 0.00 0.00 39.42 3.58
998 1313 3.119814 TGAGATTGACGAGCAGTAGTGTC 60.120 47.826 0.00 0.00 0.00 3.67
999 1314 2.820197 TGAGATTGACGAGCAGTAGTGT 59.180 45.455 0.00 0.00 0.00 3.55
1000 1315 3.494045 TGAGATTGACGAGCAGTAGTG 57.506 47.619 0.00 0.00 0.00 2.74
1001 1316 3.119316 CCTTGAGATTGACGAGCAGTAGT 60.119 47.826 0.00 0.00 0.00 2.73
1002 1317 3.443037 CCTTGAGATTGACGAGCAGTAG 58.557 50.000 0.00 0.00 0.00 2.57
1003 1318 2.166459 CCCTTGAGATTGACGAGCAGTA 59.834 50.000 0.00 0.00 0.00 2.74
1004 1319 1.066573 CCCTTGAGATTGACGAGCAGT 60.067 52.381 0.00 0.00 0.00 4.40
1005 1320 1.649664 CCCTTGAGATTGACGAGCAG 58.350 55.000 0.00 0.00 0.00 4.24
1035 1350 2.738521 CGTCAGCCACGGGACTTG 60.739 66.667 0.00 0.00 45.46 3.16
1063 1378 1.339055 TGGTGCTGCTGACCATCTTAC 60.339 52.381 7.68 0.00 38.63 2.34
1198 1513 1.379977 TCGTAGCTGACCTCCAGGG 60.380 63.158 0.00 0.00 43.13 4.45
1199 1514 1.810532 GTCGTAGCTGACCTCCAGG 59.189 63.158 0.00 0.00 43.13 4.45
1251 1566 1.098712 TTGGTGTTGTCGTCCTTGGC 61.099 55.000 0.00 0.00 0.00 4.52
1604 1920 1.391157 AAGGCCTTTTGCGCAAGTCA 61.391 50.000 23.68 5.83 42.61 3.41
1718 2049 6.716628 AGCTTACAAAATTCATGACTTCCTCA 59.283 34.615 0.00 0.00 0.00 3.86
1742 2073 4.095483 ACACAAGTCAGCAAAAGTTGAGAG 59.905 41.667 7.35 1.61 32.53 3.20
1784 2115 0.673644 CACAACCAACCTCCTAGCCG 60.674 60.000 0.00 0.00 0.00 5.52
1802 2134 2.781923 CTTGATCCACACACATGACCA 58.218 47.619 0.00 0.00 0.00 4.02
1849 2181 1.695242 TGCGGAGTAAGAAAGGACCAA 59.305 47.619 0.00 0.00 0.00 3.67
1859 2191 8.826710 TCAGACAAAATTTATATGCGGAGTAAG 58.173 33.333 0.00 0.00 0.00 2.34
2075 2414 6.010219 CCTTCTTTGTTTTATTCCTCCCTCA 58.990 40.000 0.00 0.00 0.00 3.86
2125 2464 4.632153 ACTATTGTCTTGCTTCAACGACT 58.368 39.130 0.00 0.00 0.00 4.18
2137 2476 8.672823 AAAGACTTTTCCGTAACTATTGTCTT 57.327 30.769 0.00 0.00 41.90 3.01
2292 2631 2.361104 GCCCATCCTTGTTGCGGA 60.361 61.111 0.00 0.00 34.52 5.54
2299 2638 3.866883 AAAACATAACGCCCATCCTTG 57.133 42.857 0.00 0.00 0.00 3.61
2344 2685 8.018537 AGCTAATAAATTCCGCCCTTTTATTT 57.981 30.769 5.50 0.00 37.02 1.40
2352 2693 6.430000 TCATCTTAAGCTAATAAATTCCGCCC 59.570 38.462 0.00 0.00 0.00 6.13
2373 2714 4.141711 TGTGTATCCCCTTAGTGCTTCATC 60.142 45.833 0.00 0.00 0.00 2.92
2412 2753 9.467796 CATATCTATACAGAGATCAGGTACCAA 57.532 37.037 15.94 1.46 37.38 3.67
2422 2763 9.513906 CCGTATCCATCATATCTATACAGAGAT 57.486 37.037 0.00 0.00 39.54 2.75
2429 2770 8.683615 GTGTTGACCGTATCCATCATATCTATA 58.316 37.037 0.00 0.00 0.00 1.31
2437 2778 1.903183 TGGTGTTGACCGTATCCATCA 59.097 47.619 0.00 0.00 46.62 3.07
2442 2783 2.485903 TGTGTTGGTGTTGACCGTATC 58.514 47.619 0.00 0.00 46.62 2.24
2444 2785 2.214347 CATGTGTTGGTGTTGACCGTA 58.786 47.619 0.00 0.00 46.62 4.02
2447 2788 3.880490 TCTTACATGTGTTGGTGTTGACC 59.120 43.478 9.11 0.00 43.48 4.02
2463 2804 5.237815 AGCTGTCGACATGATTTTCTTACA 58.762 37.500 20.40 0.00 0.00 2.41
2520 2861 7.947282 TCGGAGTTTTGTTCTTTTTATTCCAT 58.053 30.769 0.00 0.00 0.00 3.41
2569 2912 3.602390 TTTTTCTCGTTGTACTGCTGC 57.398 42.857 0.00 0.00 0.00 5.25
2570 2913 5.990408 AGAATTTTTCTCGTTGTACTGCTG 58.010 37.500 0.00 0.00 34.07 4.41
2571 2914 6.229561 GAGAATTTTTCTCGTTGTACTGCT 57.770 37.500 1.79 0.00 45.85 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.