>input_sequence_74590
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----------------------------------CACTACTGCTCGTCAATCTCAAGGGCACGAACGCCCAAGTCCCGTG
GCTGACGGCGACGGCGAGTAAGATGGTCAGCAGCACCAACGAAGTGCGGAGGACGGTGCAGGAGAGGCCGGTGGTGGTGG
TGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTCGCCCGGCACCTGCTCCTGCGGCAGGGCGTGAACCCGGCGGCCCTGGAG
GTCAGCTACGACGCCGACCCTGCGGCGCTCGTGTACGCGCTCCGGGCCAAGGACGACAACACCAAGTTGGTCACCGACGT
CGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGGCTGGACCGACTCATTACCATGCACATCGCCGAAGAGC
TCGTGCCGCTCCTGAGGCAGGCAGGTGCCCTGTGGCTCTGAACCTTCCTTGATGACATGCTGCCCGCTAATGGATGCCAG
TCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTTTATTTCCTGTTTTTTCCCCAATGTAT-TATGTCCGCA
TGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTCAAGAAATGGCAAATAAACCGAGTTTGTTCAT------
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>chr2A_1_TraesCS2A01G149100
ACGTACTCCAGTCTACTATACAAAAACGGACGTGATGTAAACGGCGAAAACTTGATTTTCAAGTGATCATGATGGCAGTG
GCGTCTAATTAACTTTTTTTT-AACACACGTCCGCTAATAAACTTGGTGTACGTGATATACGTGAC-GCAACAGACTTTC
TGGCCTTATACCAGTACTCCATCGCATGGGTGTTTCTTTTCTTTTAAGA-------------------------------
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------------------------------------------------------------------------------AA
AGATATGACATGT---------------TCAAAAAAATCATGGCCGGTTACGAAGATTGGAAGTTTGGCATTTTTATCTG
TTTCTTGGACAGATGTTTCTTTTTTAGTGGAAAGACAATGCTCTAGTAGTTTCTC--AAATAGCAATTGTGACTCCACTG
CTAAAATAGAGCGCTAACTATTACTCCCTCCATTCCA---AAATGTCTTAACTTTATACTAATTTTATATTAACTAATAT
AAAGTTAGTACAAAGTTGAGACATTTATTTTGGGACGGAAGGAGTACTATTTGTCATATGGATGACTATTGGCCACAAAT
GGTGAAAACTAAGTACTCCGACTAATTTAAGTATAATCAGAATAACGTGAGTGGGCATGGTGGTACGCATGCCATGTCCG
TCAGGATATG----TCAAACTCCGAATTGGACGTCATGTGTGTGTGCATGCGATATAC----GTCTCTATCAACAAGGAA
AAGCTTACGGTACGTGTCTCTGATTTAGTTTGTAGTGAGCGCGTATGAGTGACAGTGTGTATTTCCTTGTGTACAAGCGT
TGTACTTCCTCCT---------------ACTCAACTTTATACTAACTTTAGTATAAAGTTGAGACATTTATTTTGGGTCG
GAGTGATATATCCTATGTTTAGAGTATATTTTATAATTAATACGTACAATAAAGGAGTAAAGGTCCATGCATGTGCCATG
TGGCACGCCAGGACCACGAAGCTGACCTAATGCTCGTGCTCTATGCACCTCCCCGACCCATATTTCTGACCTCCACAGCC
CCCTCAAGGGCACACACCCCTCACCTCCAGTTGACACTACTGCTCGTCAATCTCAAGGGCACGAACGCCCAAGTCCCGTG
GCTGACGGCGACGGCGAGTAAGATGGTCAGCAGCACCAACGAAGTGCGGAGGACGGTGCAGGAGAGGCCGGTGGTGGTGG
TGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTCGCCCGGCACCTGCTCCTGCGGCAGGGCGTGAACCCGGCGGCCCTGGAG
GTCAGCTACGACGCCGACCCTGCGGCGCTCGTGTACGCGCTCCGGGCCAAGGACGACAACACCAAGTTGGTCACCGACGT
CGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGGCTGGACCGACTCATTACCATGCACATCGCCGAAGAGC
TCGTGCCGCTCCTGAGGCAGGCAGGTGCCCTGTGGCTCTGAACCTTCCTTGATGACATGCTGCCCGCTAATGGATGCCAG
TCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTTTATTTCCTGTTTTTTCCCCAATGTAT-TATGTCCGCA
TGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTCAAGAAATGGCAAATAAACCGAGTTTGTTCATAAGATT
GACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATTTC---------------ATTTTATTTTAGCGAGGCGG
CTTTCAGATTGTTTTTTTCACAAAGGCTTTCAGGTTGTTGAATAGGCTTGAGGAAGTCATGAATTTTGTAAGCTCTCAAC
TTTTGCTGACTTGTGTCATGCGACACAATTGTCTC-GGCTAGGAGGTTGGTTGTGGTCATGTGTGTGGATCAAGCAAGAC
TAATAATTTTAATACTCCCTTTGGTCCTTTCTTACTCCGCATATAAATTTTGTCTGAAGTCAAACTTTAAAAAGTTTAGT
CATATTCATATAAAATATATTTTAATATCTACCATACTA-------AAGTTATACAATGTGAAAATTAAAGCCACGAGGC
ATCTAATGATATTGATTTCGTATTGTGGATGTTAATTAATTTTATATAAAATTTTGATTTCAGACAGATCTTATATGGGG
AACAAAAATGACCTGAGGGAGGAATAAAACAAAGAAGGAACTTTACCGTTTCCAGCAAAATTCAGTCGTTGAAGCAAGAC
AATAGTTACGGAAAAGTCTTTTTTCAACCGACGAAACATTTTGGAAAGGAAGAGAGTTCAGGAGTTTGACCCCCATTACC
AACGTCGGCTATTAGTGCTAGTTTGGACGTGCGCATTGGAATAATAAGTCTTTTAAAAGACCGACGTCAGTCCGCAACAA
GGATGGGCGTTATGTTTTTATATTGATATCTTATAATATT--TTAAATAAAAGGGCGGAATTTATTAGCTTAAGATGAAG
CACTAAGGGGATACACACAGAAAGAGCATGCATTGGTACCTGATCTCTGTATAGATATGATGGATACGGTCAACACCAAC
ACATGTAAGAAAATCATGTCGACAGCTAGCAAAATCAAACAAGACCGAAGCTATATCTTGATGGAATA--AAAAGAACAA
AACTCCGAAGCGATCAAAACAATGATCAACAGCAGCAGTACAACGAGAAAAATTCTCCACC
>chr2D_1
ACGTACTCCAGTCTACTATACAAAAGTGGACGTGATGTAAACGGCGAAAACTTGATTTTCAAGTGATCATGATGGCGGTG
GCGTCTAATTAACTTTTTTTTGAACACACGTCCGCTAATTAACTTGTAGTACGTGATATACGTGACGGCAACAGACTTTC
TGGCCTTATACCAGTACTGGATCGCATGGGTGTTTCTTTTCTTTTAAGA-------------------------------
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AGATATGACATGTCCACACACTTGGTTATCAAAAAAATCATGGCTAGTTCCGAAGAATGGAAGTTTGGCATTTTTATATG
TTTCTTGGACAGATGTTTCTTTTTTAGTGGAAAGACAATGCTCTTGTAGTTTCTCCAAAATAGCAATTGTGACCCCACTG
TTAAAATAGAGTGCTAATTATTACTCCCTTGTTTCAAAATAAGTGACTCGACTTTGTACTAACTTTATATAC-------T
AAAGTTGGTACAAAGTTAAGTCACTTATTTTAGGACGAATGGAG---TATTTTTTAGATGGATGACTATTAGCCACAAAT
GGTGAAAACTAAGTACTCCTACTAATTTAAGTATAATCAGAATGACG--AGTGGGCATGGTGGTACGCATGCCCTGTCCG
TCGGGATATG----TCAAGCTCCGAATTTGACGTCATGGGTGTGTGCATGCGATAGATAGAAGTCTCTATCAACATGGAA
AAGCTTAT-GTACGTGTCTCTTATTTAGTTTGTAATGAGCGTGTATGAGTGACAGTGTGTATTTGCTTGCGTACAAGCGT
CGTACTCCCTTCTTTCAAAAAA--------------------TAACTTTAGTATAAAGTTGAGTCATTTATTTTGGGTCG
GAGTGATATATCCTATGTTTAGAATATATTTTATAATTAATACGTACAATAAAGGAGTAAAGCTCCATGCATGTGCCATG
TGGCACGCCAGGACCACAAAGCAGACCTAATGTTCCGGCTCTATGCACCTCCCCGATCCATATTTCTGACCTCCACAGCC
CCCACAAGGGCACACAC-----------------------TGCTCGTCGAACTCAAGCGCACGAACGCC-AAGTACCGTG
GCTGACGGCGACGGCGAATAAGATGGTGAGCAGCACCAACGAGGTGCGGAGGACGGTGCAGGAGAGGCCGGTGGTGGTGG
TGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCTGCTCCTGCGGCAGGGCGTGAACCCGACGGTGCTGGAG
GTCAGCTACGACGCCGACCCGGCGGCGCTCGTCTACGCGCTCCGGTCCAAGGACGACAACACCAAGTTGGTCACCGACGT
CGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGGCTGGACCGACTCATTACCATGCACATCGCCGAAGAGC
TCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAACCTTCCTTGATGACATGCTGCCCGCTAATGGATGCCAG
TCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTTTGTTTCCTGTTTTTTCCCCAATGTAT-TATGTCTGCA
TGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTCAAGAAATGGCAAATAAACCGAGTTTGTTCATAAGATC
GACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATTTCATTTCATTTCATTTTATTTTATTTTAGCGAGGCGG
CTTTCAGATTGTTTTTTTTACAAAGGCTTTCAGGTTGTTGAATAGGCTCGAGGAAGTCATGAATTTTGTAAGTTCTCAAC
TTTTGCTGACTTGTGTCATGCGACACAATTGTCTTAGGTTAGGAGGTTGGTTGAGGTCATGAGTGTGGATCGAACAAGAC
TAATAATTTTAATACTCCCTCTGGTTCTTT-TTACTCCGCATATAAATTTTGTCTTAAGTCAAACTTCAAAAGGTTTAAT
CATATTTATATAAAATATATATATTAATAT------CTACCATACTAAGTTATACAATGTGAAAATTAAAGCCACGAGAC
ATCTAATGATATTGATTTCGTATTGTGAATGTTCATTAATTCTATATGAAATTTTGATTTCAGACAGATCTTATATGGGA
AACAAAAATGACTGGATGGAGGAATAAAACAAAGAAGGAACTTTACCGTTTCCAGCAAAATTCGGTCGTTGAAGCGAGAC
AATAGTTACGGAAAAGTCTTTTATCAACCGACGAAACATTTTCGAAAGGAAGAGAGTTCAGGAGTTTGACCCCCATTACC
AACGTCGGCTATTAGTGCTAGATTGGACGTGCGCATTGGAATA---AGTCTTCTAAAAGACCGACGTCAGCCCGCAAAAA
GGATAGGCGTTATGTTTTTATATTGATATCTTATAATATT--TTCAATAAAAAGGCAGAATTTATTAGCTTAAAATGAAG
CACTAAGGGGATACACACAGAAAGAGCATGCACTGGTACCCGGTCTTTGCATAATGCATAT------AGTCAACACTAAC
ACACGTAAGAAAATCACGTCGGCAGCTAGCAAAATCAAACAAGACCAAAACTATGTCTTGGTGGAATATAAAAAGAACAA
AACTCCGAAGCAATCAAAACAATGATCAACA------------------------------
>chr2B_146
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-------------------------------------------------------------------GCAACAGACTTTC
TGCCCTTACACTAGTACTGGATCGCATGGGTGTTTCTTTTCTTTTAAGACTAGTTGTCGGACTGGGTGGAGGCATGGGAA
TGGACGGCGCCGGCAGGCGGCAGCGGCCACCATGCTAGATTGTTCCAGAAACTTCCTTTTTTTAATTTCTCAGCAATGAG
GTTGTGGGAGATAAGGATGTGAAGAGAGGTGCGGGTATCTTTTGTAAAATTATCATAGTTTGCTTTCTATCCGTCAAATA
TAGATCGGGCGGTCTATATTACAAGATGGCAGGCACACCATGCATCATCACAAACTCGGTTTTTTATAAAGATAAAGAAA
AGATATGACATGTTCACACACTTGGTTATCAAAAGAATCATGGCTGGTTCCGAAGATTGGAAGTTTGGCATTTTTATCTG
TTTCTTGGACAGATGTTTCTTTTTAC-TGGAAAGACAATGCTCTAGTAGTTTCTCAAAA-TAGCGATTGTGACTCCACTG
CTGAAATAGGGCGATAATTAATTAT-------------------------------------------------------
-----------------------------------------------TATTTGTCAGATGGATGACTATTTGCCACAAAT
GGTGAAAACTAAGTACTCGTACTAATTTAAGTATAATCAGAATCACGTAAATGGGCATGGTGGTACGCATGCCCTGTCCG
TCAGGATATGCATGTCAAACTCCGAATTTGATGTCATGTGTGTGTGCATGCGATAGGC----GTCTCTATCAACAAGGAA
AAGCTTAC-GTACGCGTCTCTGATTTAGTTTGTAGTGAGCGCGTATGAGTGACAGTGTGTATTTGCTTGCGTACAAGTGT
TGTACTCCCTCCTTTTTAAAAATAAGTGACTCAACTTTATACTAACTTTAGTATAAAGTTAAGTCATTTATTTTGGGTGG
GAGTGATATATCCTATGTTTGGAGTATTTTCTATAATCAATACGTACAATAAAGGAGTAAAGCTCCATGCATGTGCCATG
TGGCACGCCAGGACCACGAAGCTGACCTAATGTTCCGGCTCTATGCACCTCCCCGATCCATATTTCTGACCTCCACAGCC
CCCACAAGGGCACACACCCCTCACCTCAGTCGA----------TCGTCAATCTCAAGCGCACGAACGCG-AAGTCCCGTG
GCCGACGGCGACGGCCGCAACCATGGTCAGCAGCACCAACGAGGTGCGGAGGACGGTGCAAGAGAGGCCGGTTGTGGTGG
TGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCTGCTCCTGCGACAAGGCGTGAACCCGGCGGTGCTGGAG
GTCAGCTACGACGCCGACCCGGCGACGCTCGTCTACGCGCTCCGGTCCAAGGACGACAACACCAAGTTGGTCACCGACGT
CGCCTTCCCGGTGGTGTTCGTCGGGGGCAGGCTGTTGGGCGGGCTGGACCGACTCATTACCATGCACATCGCCGAGGAGC
TCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAACCTTCCTGGATGACACGCTGCCCGTTAATGCATCCCAG
CCTGAATCAGTTATAAGCTTCCGTTCCATGTGTGCGAGTGCTTTGTTTCCTGTTTTTTCCTCAATGTATCTATATCCGCA
TGCCATATACTCTACCTAGTATTGTAAGCTTCCTTTATCCTTCAAGAAATGGCAAATAAACCG-GTTTGTTCATAAGATC
GACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATTTTATTTTATTTTAA-----------TTAGCGAGGAGG
CTTTCAGATTGTTTTTT-CACAAAGCCTTTCAGGTTGTTGAATAGGCTCGAGGAAGTGATGAATTTTGTAAGATCTCAAC
TTTTGCTAACTTGTGTCATGCGACACAATTGTCTG-GGCTAGGAGGTTGGTTGAGGACATGTATGTGGATCGAACAAGAC
TAATAATTTTAATACTCCCTCTTGCCCTTT-TTACTCCGCATATAAAATTTGTCTGAAGTCAAACTTTAAAAAGTTTAAC
CATATTTATATAAAA---ATATATTAATAT------CTA-------AAGTTATACAGTGTGAAAATTAAAGCCACCACAC
ATCTAATGATATTGATTTCGTATTGTGATTATTAATTGTCTTTATATAAAATTTTGATTTCAGACAAATCTTATGTGGGG
AACAAAAATGACCGGAGGGAGGAATAAAACAAAGAAGGAAGTTTACCGTTTCCAGCAAAATCCGGTCGTTGAAGCGAGAC
AGTAGTTATGGAAAAGTCTTTTTTCAACCGGCGAAACATTTCGCAAAGGAAGAGAGTTCAGGA-----------------
------GGCTATTAGTGCTAGTTTGGACGTGCGCATTGGAACA---AGTCTTTTGAAAGACCGACGTAAGCCCGCAAAAA
GGATGAGTGTTACGTTTTTTTATTGATATCTTATAATTTATCTTCAATAAAAAGGTGGAATTTATTAGCTTAAAATGAAG
CATTAAGGGGATACACACAAAAAGAGCATGCACTGGTACTCGGTCTCTGCATAGATAGGATGTACACAGTCAACACCAAT
ACACGTAAGAAAATCATGTCGACAGCTAGCAAAATCAAACAAAACCAAAGGTATGTCTTGGTGGAAT--AAAAAGAACAA
AACTCTGAAGCGATCAAAACAATGATCAACA------------------------------
>SNPs
-------------------------SS-------------------------------------------------S---
---------------------------------------S------SS--------------------------------
------------------SS------------------------------------------------------------
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--------------------------------------------S----S------------------------------
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-----------------S-----------SSS---S------S--S--SS-----S------S-------SSSSSSSSS-
------S----------S--S--S-------S-----S-S----SSS---------S-------------S---------
-------------------S-----------------------S----S------------------------S------
----------------------------S--------------------------S------------------------
--------S-------------------------------------------------------S----S----------
------S--------------------------------------------------------S----------------
--------------------------------------------------------------S-----------------
--------------------------------S--SS-------------------S-----------------------
---S-----------------------SSSSSSSSSSSSS-----------------S-----------S----------
-----------------S------------------------S-------------------------------------
-------------------------------S----------------------------------------SS------
--------------------S-----------S------------S----------------------------------
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-------------------------S------------------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------------------------------------------------------------S
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------------------------------------------------S-----------------------S-------
----------------------------------S------------------S-----------------S-S------
--------------------S---------S-----------------------------------------------S-
------S-------------S-SSSS--S-SSSSSS------------------------------------------S-
---------------------------S----------------------------------------------------
-------------S-------------------------------------------------S-----------S----
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-------------------------------------------SSS------------------------S------S--
--------------------------------------------S-------S--------------------S------
--------------------------------S-------S-S------S-------S----S-S--S------------
---S------------------------------------------S-------S-----S-------------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1233
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-------------CCACGAAGCTGACCTAATGC-----------------------------------------------
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>reverse_2115
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----------------------------------CGGCTAGGAGGTTGGTTGTG--------------------------
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