Multiple sequence alignment - TraesCS2A01G144700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G144700 chr2A 100.000 2698 0 0 1 2698 89595744 89598441 0.000000e+00 4983
1 TraesCS2A01G144700 chr2A 79.001 681 100 27 933 1593 89585405 89586062 2.480000e-115 425
2 TraesCS2A01G144700 chr5D 97.413 889 19 4 1812 2698 548630601 548631487 0.000000e+00 1511
3 TraesCS2A01G144700 chr5D 86.443 686 73 17 1914 2591 407694538 407695211 0.000000e+00 734
4 TraesCS2A01G144700 chr5D 86.111 72 6 2 1722 1793 548630535 548630602 1.040000e-09 75
5 TraesCS2A01G144700 chr7D 91.066 985 64 17 1718 2698 509833076 509832112 0.000000e+00 1310
6 TraesCS2A01G144700 chr7D 90.937 993 63 17 1719 2698 590351831 590352809 0.000000e+00 1310
7 TraesCS2A01G144700 chr7D 90.520 981 69 17 1722 2698 603471439 603470479 0.000000e+00 1275
8 TraesCS2A01G144700 chr7D 79.538 303 40 17 2399 2698 477648655 477648938 2.120000e-46 196
9 TraesCS2A01G144700 chr2B 86.645 921 79 22 717 1606 142675232 142676139 0.000000e+00 979
10 TraesCS2A01G144700 chr2B 77.239 681 110 32 929 1587 142445879 142446536 9.190000e-95 357
11 TraesCS2A01G144700 chr2B 83.957 187 29 1 4 190 142447773 142447958 7.680000e-41 178
12 TraesCS2A01G144700 chr2B 92.632 95 6 1 888 982 142449346 142449439 4.690000e-28 135
13 TraesCS2A01G144700 chr2D 87.339 853 69 17 872 1701 89940527 89941363 0.000000e+00 941
14 TraesCS2A01G144700 chr2D 84.065 433 51 8 927 1358 89907848 89908263 4.180000e-108 401
15 TraesCS2A01G144700 chr6D 88.278 691 58 15 1905 2591 446619047 446618376 0.000000e+00 806
16 TraesCS2A01G144700 chr1D 87.954 689 63 14 1908 2591 342451428 342450755 0.000000e+00 795
17 TraesCS2A01G144700 chr1D 87.410 691 63 16 1905 2591 46325969 46326639 0.000000e+00 773
18 TraesCS2A01G144700 chr4D 87.627 687 61 15 1908 2591 204710099 204709434 0.000000e+00 776
19 TraesCS2A01G144700 chr4D 82.587 201 21 8 2478 2677 461359861 461360048 5.980000e-37 165
20 TraesCS2A01G144700 chr4D 85.625 160 9 11 2540 2698 393642781 393642927 3.600000e-34 156
21 TraesCS2A01G144700 chr5B 83.871 155 11 10 2543 2696 532700114 532699973 4.690000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G144700 chr2A 89595744 89598441 2697 False 4983.000000 4983 100.000000 1 2698 1 chr2A.!!$F2 2697
1 TraesCS2A01G144700 chr2A 89585405 89586062 657 False 425.000000 425 79.001000 933 1593 1 chr2A.!!$F1 660
2 TraesCS2A01G144700 chr5D 548630535 548631487 952 False 793.000000 1511 91.762000 1722 2698 2 chr5D.!!$F2 976
3 TraesCS2A01G144700 chr5D 407694538 407695211 673 False 734.000000 734 86.443000 1914 2591 1 chr5D.!!$F1 677
4 TraesCS2A01G144700 chr7D 509832112 509833076 964 True 1310.000000 1310 91.066000 1718 2698 1 chr7D.!!$R1 980
5 TraesCS2A01G144700 chr7D 590351831 590352809 978 False 1310.000000 1310 90.937000 1719 2698 1 chr7D.!!$F2 979
6 TraesCS2A01G144700 chr7D 603470479 603471439 960 True 1275.000000 1275 90.520000 1722 2698 1 chr7D.!!$R2 976
7 TraesCS2A01G144700 chr2B 142675232 142676139 907 False 979.000000 979 86.645000 717 1606 1 chr2B.!!$F1 889
8 TraesCS2A01G144700 chr2B 142445879 142449439 3560 False 223.333333 357 84.609333 4 1587 3 chr2B.!!$F2 1583
9 TraesCS2A01G144700 chr2D 89940527 89941363 836 False 941.000000 941 87.339000 872 1701 1 chr2D.!!$F2 829
10 TraesCS2A01G144700 chr6D 446618376 446619047 671 True 806.000000 806 88.278000 1905 2591 1 chr6D.!!$R1 686
11 TraesCS2A01G144700 chr1D 342450755 342451428 673 True 795.000000 795 87.954000 1908 2591 1 chr1D.!!$R1 683
12 TraesCS2A01G144700 chr1D 46325969 46326639 670 False 773.000000 773 87.410000 1905 2591 1 chr1D.!!$F1 686
13 TraesCS2A01G144700 chr4D 204709434 204710099 665 True 776.000000 776 87.627000 1908 2591 1 chr4D.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.034896 TCTTTCCGGTGGAAGCTCAC 59.965 55.0 0.00 0.00 43.06 3.51 F
846 848 0.948623 TTTCCATCACTGTCGGCGTG 60.949 55.0 6.85 5.78 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1095 1114 0.880278 TCTCAACCTGTTCGCTGTGC 60.880 55.000 0.00 0.0 0.00 4.57 R
1758 3466 1.154263 CGAGTCGTTCGGTCTGGTC 60.154 63.158 3.82 0.0 45.54 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.865590 AAAAAGTAGCGAAATAACATGTTTGT 57.134 26.923 17.78 3.25 37.82 2.83
26 27 7.851822 AAAGTAGCGAAATAACATGTTTGTG 57.148 32.000 17.78 4.20 35.83 3.33
27 28 5.938322 AGTAGCGAAATAACATGTTTGTGG 58.062 37.500 17.78 5.09 35.83 4.17
28 29 3.574614 AGCGAAATAACATGTTTGTGGC 58.425 40.909 17.78 14.17 35.83 5.01
29 30 3.255642 AGCGAAATAACATGTTTGTGGCT 59.744 39.130 17.78 16.04 35.83 4.75
30 31 3.987220 GCGAAATAACATGTTTGTGGCTT 59.013 39.130 17.78 1.69 35.83 4.35
31 32 4.447389 GCGAAATAACATGTTTGTGGCTTT 59.553 37.500 17.78 7.38 35.83 3.51
32 33 5.050431 GCGAAATAACATGTTTGTGGCTTTT 60.050 36.000 17.78 5.94 35.83 2.27
33 34 6.354080 CGAAATAACATGTTTGTGGCTTTTG 58.646 36.000 17.78 7.57 35.83 2.44
34 35 6.019156 CGAAATAACATGTTTGTGGCTTTTGT 60.019 34.615 17.78 0.00 35.83 2.83
35 36 6.601741 AATAACATGTTTGTGGCTTTTGTG 57.398 33.333 17.78 0.00 35.83 3.33
36 37 3.608316 ACATGTTTGTGGCTTTTGTGT 57.392 38.095 0.00 0.00 33.85 3.72
37 38 3.936564 ACATGTTTGTGGCTTTTGTGTT 58.063 36.364 0.00 0.00 33.85 3.32
38 39 5.078411 ACATGTTTGTGGCTTTTGTGTTA 57.922 34.783 0.00 0.00 33.85 2.41
39 40 5.108517 ACATGTTTGTGGCTTTTGTGTTAG 58.891 37.500 0.00 0.00 33.85 2.34
40 41 5.105554 ACATGTTTGTGGCTTTTGTGTTAGA 60.106 36.000 0.00 0.00 33.85 2.10
41 42 4.992688 TGTTTGTGGCTTTTGTGTTAGAG 58.007 39.130 0.00 0.00 0.00 2.43
42 43 3.708563 TTGTGGCTTTTGTGTTAGAGC 57.291 42.857 0.00 0.00 0.00 4.09
46 47 2.316119 GCTTTTGTGTTAGAGCCACG 57.684 50.000 0.00 0.00 35.56 4.94
47 48 1.602377 GCTTTTGTGTTAGAGCCACGT 59.398 47.619 0.00 0.00 35.56 4.49
48 49 2.032924 GCTTTTGTGTTAGAGCCACGTT 59.967 45.455 0.00 0.00 35.56 3.99
49 50 3.488553 GCTTTTGTGTTAGAGCCACGTTT 60.489 43.478 0.00 0.00 35.56 3.60
50 51 3.684103 TTTGTGTTAGAGCCACGTTTG 57.316 42.857 0.00 0.00 35.56 2.93
51 52 2.319136 TGTGTTAGAGCCACGTTTGT 57.681 45.000 0.00 0.00 35.56 2.83
52 53 2.634600 TGTGTTAGAGCCACGTTTGTT 58.365 42.857 0.00 0.00 35.56 2.83
53 54 2.353269 TGTGTTAGAGCCACGTTTGTTG 59.647 45.455 0.00 0.00 35.56 3.33
54 55 2.610374 GTGTTAGAGCCACGTTTGTTGA 59.390 45.455 0.00 0.00 0.00 3.18
55 56 3.064271 GTGTTAGAGCCACGTTTGTTGAA 59.936 43.478 0.00 0.00 0.00 2.69
56 57 3.880490 TGTTAGAGCCACGTTTGTTGAAT 59.120 39.130 0.00 0.00 0.00 2.57
57 58 5.049954 GTGTTAGAGCCACGTTTGTTGAATA 60.050 40.000 0.00 0.00 0.00 1.75
58 59 5.703592 TGTTAGAGCCACGTTTGTTGAATAT 59.296 36.000 0.00 0.00 0.00 1.28
59 60 6.205853 TGTTAGAGCCACGTTTGTTGAATATT 59.794 34.615 0.00 0.00 0.00 1.28
60 61 7.388224 TGTTAGAGCCACGTTTGTTGAATATTA 59.612 33.333 0.00 0.00 0.00 0.98
61 62 8.395633 GTTAGAGCCACGTTTGTTGAATATTAT 58.604 33.333 0.00 0.00 0.00 1.28
62 63 6.785191 AGAGCCACGTTTGTTGAATATTATG 58.215 36.000 0.00 0.00 0.00 1.90
63 64 6.374333 AGAGCCACGTTTGTTGAATATTATGT 59.626 34.615 0.00 0.00 0.00 2.29
64 65 6.919721 AGCCACGTTTGTTGAATATTATGTT 58.080 32.000 0.00 0.00 0.00 2.71
65 66 7.375053 AGCCACGTTTGTTGAATATTATGTTT 58.625 30.769 0.00 0.00 0.00 2.83
66 67 7.540745 AGCCACGTTTGTTGAATATTATGTTTC 59.459 33.333 0.00 0.00 0.00 2.78
67 68 7.327275 GCCACGTTTGTTGAATATTATGTTTCA 59.673 33.333 0.00 0.00 0.00 2.69
68 69 9.186323 CCACGTTTGTTGAATATTATGTTTCAA 57.814 29.630 0.00 0.00 39.00 2.69
77 78 9.979578 TTGAATATTATGTTTCAACAAGCACTT 57.020 25.926 0.00 0.00 43.03 3.16
82 83 8.761575 ATTATGTTTCAACAAGCACTTATTGG 57.238 30.769 1.85 0.00 43.03 3.16
83 84 4.942852 TGTTTCAACAAGCACTTATTGGG 58.057 39.130 1.85 0.00 35.67 4.12
84 85 4.202202 TGTTTCAACAAGCACTTATTGGGG 60.202 41.667 1.85 0.00 35.67 4.96
85 86 3.517296 TCAACAAGCACTTATTGGGGA 57.483 42.857 1.85 0.00 28.70 4.81
86 87 4.046286 TCAACAAGCACTTATTGGGGAT 57.954 40.909 1.85 0.00 28.70 3.85
87 88 5.186256 TCAACAAGCACTTATTGGGGATA 57.814 39.130 1.85 0.00 28.70 2.59
88 89 5.575157 TCAACAAGCACTTATTGGGGATAA 58.425 37.500 1.85 0.00 28.70 1.75
97 98 5.228945 CTTATTGGGGATAAGTGGATCGT 57.771 43.478 0.00 0.00 41.46 3.73
98 99 5.621193 CTTATTGGGGATAAGTGGATCGTT 58.379 41.667 0.00 0.00 41.46 3.85
99 100 4.519906 ATTGGGGATAAGTGGATCGTTT 57.480 40.909 0.00 0.00 0.00 3.60
100 101 3.275617 TGGGGATAAGTGGATCGTTTG 57.724 47.619 0.00 0.00 0.00 2.93
101 102 2.092646 TGGGGATAAGTGGATCGTTTGG 60.093 50.000 0.00 0.00 0.00 3.28
102 103 2.572290 GGGATAAGTGGATCGTTTGGG 58.428 52.381 0.00 0.00 0.00 4.12
103 104 2.092592 GGGATAAGTGGATCGTTTGGGT 60.093 50.000 0.00 0.00 0.00 4.51
104 105 3.617284 GGATAAGTGGATCGTTTGGGTT 58.383 45.455 0.00 0.00 0.00 4.11
105 106 3.626217 GGATAAGTGGATCGTTTGGGTTC 59.374 47.826 0.00 0.00 0.00 3.62
106 107 2.649531 AAGTGGATCGTTTGGGTTCA 57.350 45.000 0.00 0.00 0.00 3.18
107 108 2.879103 AGTGGATCGTTTGGGTTCAT 57.121 45.000 0.00 0.00 0.00 2.57
108 109 3.154827 AGTGGATCGTTTGGGTTCATT 57.845 42.857 0.00 0.00 0.00 2.57
109 110 3.496331 AGTGGATCGTTTGGGTTCATTT 58.504 40.909 0.00 0.00 0.00 2.32
110 111 3.255642 AGTGGATCGTTTGGGTTCATTTG 59.744 43.478 0.00 0.00 0.00 2.32
111 112 2.029470 TGGATCGTTTGGGTTCATTTGC 60.029 45.455 0.00 0.00 0.00 3.68
112 113 2.231235 GGATCGTTTGGGTTCATTTGCT 59.769 45.455 0.00 0.00 0.00 3.91
113 114 3.501950 GATCGTTTGGGTTCATTTGCTC 58.498 45.455 0.00 0.00 0.00 4.26
114 115 1.611491 TCGTTTGGGTTCATTTGCTCC 59.389 47.619 0.00 0.00 0.00 4.70
115 116 1.339610 CGTTTGGGTTCATTTGCTCCA 59.660 47.619 0.00 0.00 0.00 3.86
116 117 2.223923 CGTTTGGGTTCATTTGCTCCAA 60.224 45.455 0.00 0.00 35.91 3.53
117 118 3.739519 CGTTTGGGTTCATTTGCTCCAAA 60.740 43.478 0.00 0.00 42.86 3.28
118 119 4.388485 GTTTGGGTTCATTTGCTCCAAAT 58.612 39.130 8.73 0.00 45.45 2.32
126 127 2.791383 TTTGCTCCAAATGTTGACGG 57.209 45.000 0.00 0.00 0.00 4.79
127 128 0.313672 TTGCTCCAAATGTTGACGGC 59.686 50.000 0.00 0.00 0.00 5.68
128 129 1.154225 GCTCCAAATGTTGACGGCG 60.154 57.895 4.80 4.80 0.00 6.46
129 130 1.501741 CTCCAAATGTTGACGGCGG 59.498 57.895 13.24 0.00 0.00 6.13
130 131 0.953471 CTCCAAATGTTGACGGCGGA 60.953 55.000 13.24 0.00 0.00 5.54
131 132 0.322098 TCCAAATGTTGACGGCGGAT 60.322 50.000 13.24 0.00 0.00 4.18
132 133 1.066071 TCCAAATGTTGACGGCGGATA 60.066 47.619 13.24 0.00 0.00 2.59
133 134 1.740585 CCAAATGTTGACGGCGGATAA 59.259 47.619 13.24 0.00 0.00 1.75
134 135 2.477189 CCAAATGTTGACGGCGGATAAC 60.477 50.000 13.24 13.50 0.00 1.89
135 136 1.375551 AATGTTGACGGCGGATAACC 58.624 50.000 13.24 0.00 0.00 2.85
136 137 0.539986 ATGTTGACGGCGGATAACCT 59.460 50.000 13.24 3.61 0.00 3.50
137 138 0.108520 TGTTGACGGCGGATAACCTC 60.109 55.000 13.24 0.00 0.00 3.85
138 139 0.808847 GTTGACGGCGGATAACCTCC 60.809 60.000 13.24 0.00 41.07 4.30
139 140 1.963464 TTGACGGCGGATAACCTCCC 61.963 60.000 13.24 0.00 41.49 4.30
140 141 3.495352 GACGGCGGATAACCTCCCG 62.495 68.421 13.24 13.87 46.50 5.14
144 145 4.438346 CGGATAACCTCCCGCTTG 57.562 61.111 0.00 0.00 41.49 4.01
145 146 1.820581 CGGATAACCTCCCGCTTGA 59.179 57.895 0.00 0.00 41.49 3.02
146 147 0.393077 CGGATAACCTCCCGCTTGAT 59.607 55.000 0.00 0.00 41.49 2.57
147 148 1.873903 CGGATAACCTCCCGCTTGATG 60.874 57.143 0.00 0.00 41.49 3.07
148 149 1.416401 GGATAACCTCCCGCTTGATGA 59.584 52.381 0.00 0.00 38.19 2.92
149 150 2.158813 GGATAACCTCCCGCTTGATGAA 60.159 50.000 0.00 0.00 38.19 2.57
150 151 2.691409 TAACCTCCCGCTTGATGAAG 57.309 50.000 0.00 0.00 0.00 3.02
151 152 0.984230 AACCTCCCGCTTGATGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
152 153 0.250513 ACCTCCCGCTTGATGAAGAC 59.749 55.000 0.00 0.00 0.00 3.01
153 154 0.539051 CCTCCCGCTTGATGAAGACT 59.461 55.000 0.00 0.00 0.00 3.24
154 155 1.472376 CCTCCCGCTTGATGAAGACTC 60.472 57.143 0.00 0.00 0.00 3.36
155 156 1.480137 CTCCCGCTTGATGAAGACTCT 59.520 52.381 0.00 0.00 0.00 3.24
156 157 1.902508 TCCCGCTTGATGAAGACTCTT 59.097 47.619 0.00 0.00 0.00 2.85
157 158 2.303022 TCCCGCTTGATGAAGACTCTTT 59.697 45.455 0.00 0.00 0.00 2.52
158 159 2.675348 CCCGCTTGATGAAGACTCTTTC 59.325 50.000 0.00 0.00 0.00 2.62
159 160 2.675348 CCGCTTGATGAAGACTCTTTCC 59.325 50.000 0.00 0.00 0.00 3.13
160 161 2.346847 CGCTTGATGAAGACTCTTTCCG 59.653 50.000 0.00 0.00 0.00 4.30
161 162 2.675348 GCTTGATGAAGACTCTTTCCGG 59.325 50.000 0.00 0.00 0.00 5.14
162 163 3.866449 GCTTGATGAAGACTCTTTCCGGT 60.866 47.826 0.00 0.00 0.00 5.28
163 164 3.319137 TGATGAAGACTCTTTCCGGTG 57.681 47.619 0.00 0.00 0.00 4.94
164 165 2.028112 TGATGAAGACTCTTTCCGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
165 166 1.712056 TGAAGACTCTTTCCGGTGGA 58.288 50.000 0.00 0.00 0.00 4.02
166 167 2.043992 TGAAGACTCTTTCCGGTGGAA 58.956 47.619 0.00 0.00 40.27 3.53
167 168 2.037251 TGAAGACTCTTTCCGGTGGAAG 59.963 50.000 0.00 4.99 43.06 3.46
168 169 0.321996 AGACTCTTTCCGGTGGAAGC 59.678 55.000 0.00 0.00 43.06 3.86
169 170 0.321996 GACTCTTTCCGGTGGAAGCT 59.678 55.000 0.00 0.00 43.06 3.74
170 171 0.321996 ACTCTTTCCGGTGGAAGCTC 59.678 55.000 0.00 0.00 43.06 4.09
171 172 0.321671 CTCTTTCCGGTGGAAGCTCA 59.678 55.000 0.00 0.00 43.06 4.26
172 173 0.034896 TCTTTCCGGTGGAAGCTCAC 59.965 55.000 0.00 0.00 43.06 3.51
180 181 2.730550 GTGGAAGCTCACCAATTTGG 57.269 50.000 14.02 14.02 45.02 3.28
181 182 1.273327 GTGGAAGCTCACCAATTTGGG 59.727 52.381 19.39 8.68 43.37 4.12
182 183 1.133199 TGGAAGCTCACCAATTTGGGT 60.133 47.619 19.39 2.84 43.37 4.51
193 194 5.823861 ACCAATTTGGGTGCTTTTCTATT 57.176 34.783 19.39 0.00 43.37 1.73
194 195 6.926630 ACCAATTTGGGTGCTTTTCTATTA 57.073 33.333 19.39 0.00 43.37 0.98
195 196 7.309770 ACCAATTTGGGTGCTTTTCTATTAA 57.690 32.000 19.39 0.00 43.37 1.40
196 197 7.386059 ACCAATTTGGGTGCTTTTCTATTAAG 58.614 34.615 19.39 0.00 43.37 1.85
197 198 7.016170 ACCAATTTGGGTGCTTTTCTATTAAGT 59.984 33.333 19.39 0.00 43.37 2.24
198 199 7.877612 CCAATTTGGGTGCTTTTCTATTAAGTT 59.122 33.333 7.60 0.00 32.67 2.66
199 200 9.271828 CAATTTGGGTGCTTTTCTATTAAGTTT 57.728 29.630 0.00 0.00 0.00 2.66
200 201 8.831715 ATTTGGGTGCTTTTCTATTAAGTTTG 57.168 30.769 0.00 0.00 0.00 2.93
201 202 5.778862 TGGGTGCTTTTCTATTAAGTTTGC 58.221 37.500 0.00 0.00 0.00 3.68
202 203 4.857037 GGGTGCTTTTCTATTAAGTTTGCG 59.143 41.667 0.00 0.00 0.00 4.85
203 204 5.458015 GGTGCTTTTCTATTAAGTTTGCGT 58.542 37.500 0.00 0.00 0.00 5.24
204 205 6.348704 GGGTGCTTTTCTATTAAGTTTGCGTA 60.349 38.462 0.00 0.00 0.00 4.42
205 206 6.522165 GGTGCTTTTCTATTAAGTTTGCGTAC 59.478 38.462 0.00 0.00 0.00 3.67
206 207 6.245710 GTGCTTTTCTATTAAGTTTGCGTACG 59.754 38.462 11.84 11.84 0.00 3.67
207 208 6.073657 TGCTTTTCTATTAAGTTTGCGTACGT 60.074 34.615 17.90 0.00 0.00 3.57
208 209 6.793680 GCTTTTCTATTAAGTTTGCGTACGTT 59.206 34.615 17.90 5.20 0.00 3.99
209 210 7.201124 GCTTTTCTATTAAGTTTGCGTACGTTG 60.201 37.037 17.90 0.00 0.00 4.10
210 211 5.766702 TCTATTAAGTTTGCGTACGTTGG 57.233 39.130 17.90 0.00 0.00 3.77
211 212 5.229423 TCTATTAAGTTTGCGTACGTTGGT 58.771 37.500 17.90 0.56 0.00 3.67
212 213 6.385843 TCTATTAAGTTTGCGTACGTTGGTA 58.614 36.000 17.90 0.00 0.00 3.25
213 214 7.035004 TCTATTAAGTTTGCGTACGTTGGTAT 58.965 34.615 17.90 2.72 0.00 2.73
214 215 5.921004 TTAAGTTTGCGTACGTTGGTATT 57.079 34.783 17.90 7.89 0.00 1.89
215 216 7.593875 ATTAAGTTTGCGTACGTTGGTATTA 57.406 32.000 17.90 6.95 0.00 0.98
216 217 7.593875 TTAAGTTTGCGTACGTTGGTATTAT 57.406 32.000 17.90 0.00 0.00 1.28
217 218 8.694975 TTAAGTTTGCGTACGTTGGTATTATA 57.305 30.769 17.90 0.00 0.00 0.98
218 219 7.593875 AAGTTTGCGTACGTTGGTATTATAA 57.406 32.000 17.90 0.00 0.00 0.98
219 220 7.593875 AGTTTGCGTACGTTGGTATTATAAA 57.406 32.000 17.90 1.29 0.00 1.40
220 221 8.027440 AGTTTGCGTACGTTGGTATTATAAAA 57.973 30.769 17.90 0.00 0.00 1.52
221 222 8.502387 AGTTTGCGTACGTTGGTATTATAAAAA 58.498 29.630 17.90 0.00 0.00 1.94
222 223 9.276397 GTTTGCGTACGTTGGTATTATAAAAAT 57.724 29.630 17.90 0.00 0.00 1.82
223 224 9.837525 TTTGCGTACGTTGGTATTATAAAAATT 57.162 25.926 17.90 0.00 0.00 1.82
224 225 8.823584 TGCGTACGTTGGTATTATAAAAATTG 57.176 30.769 17.90 0.00 0.00 2.32
225 226 7.909121 TGCGTACGTTGGTATTATAAAAATTGG 59.091 33.333 17.90 0.00 0.00 3.16
226 227 8.121708 GCGTACGTTGGTATTATAAAAATTGGA 58.878 33.333 17.90 0.00 0.00 3.53
230 231 9.111613 ACGTTGGTATTATAAAAATTGGATCGA 57.888 29.630 0.00 0.00 0.00 3.59
231 232 9.377383 CGTTGGTATTATAAAAATTGGATCGAC 57.623 33.333 0.00 0.00 0.00 4.20
263 264 7.713764 AACAAATGTTTCTTAAGTTGATGGC 57.286 32.000 1.63 0.00 33.93 4.40
264 265 6.223120 ACAAATGTTTCTTAAGTTGATGGCC 58.777 36.000 0.00 0.00 0.00 5.36
265 266 5.405935 AATGTTTCTTAAGTTGATGGCCC 57.594 39.130 0.00 0.00 0.00 5.80
266 267 3.161866 TGTTTCTTAAGTTGATGGCCCC 58.838 45.455 0.00 0.00 0.00 5.80
267 268 3.161866 GTTTCTTAAGTTGATGGCCCCA 58.838 45.455 0.00 0.00 0.00 4.96
268 269 3.756082 TTCTTAAGTTGATGGCCCCAT 57.244 42.857 0.00 0.00 39.69 4.00
269 270 3.756082 TCTTAAGTTGATGGCCCCATT 57.244 42.857 0.00 0.00 36.70 3.16
270 271 4.871871 TCTTAAGTTGATGGCCCCATTA 57.128 40.909 0.00 0.00 36.70 1.90
271 272 5.199982 TCTTAAGTTGATGGCCCCATTAA 57.800 39.130 0.00 0.73 36.70 1.40
272 273 5.584913 TCTTAAGTTGATGGCCCCATTAAA 58.415 37.500 0.00 0.27 36.70 1.52
273 274 5.656416 TCTTAAGTTGATGGCCCCATTAAAG 59.344 40.000 0.00 1.69 36.70 1.85
274 275 3.756082 AGTTGATGGCCCCATTAAAGA 57.244 42.857 0.00 0.00 36.70 2.52
275 276 4.270317 AGTTGATGGCCCCATTAAAGAT 57.730 40.909 0.00 0.00 36.70 2.40
276 277 5.402054 AGTTGATGGCCCCATTAAAGATA 57.598 39.130 0.00 0.00 36.70 1.98
277 278 5.776358 AGTTGATGGCCCCATTAAAGATAA 58.224 37.500 0.00 0.00 36.70 1.75
278 279 6.201591 AGTTGATGGCCCCATTAAAGATAAA 58.798 36.000 0.00 0.00 36.70 1.40
279 280 6.324770 AGTTGATGGCCCCATTAAAGATAAAG 59.675 38.462 0.00 0.00 36.70 1.85
280 281 6.024563 TGATGGCCCCATTAAAGATAAAGA 57.975 37.500 0.00 0.00 36.70 2.52
281 282 6.439487 TGATGGCCCCATTAAAGATAAAGAA 58.561 36.000 0.00 0.00 36.70 2.52
282 283 7.075148 TGATGGCCCCATTAAAGATAAAGAAT 58.925 34.615 0.00 0.00 36.70 2.40
283 284 7.568366 TGATGGCCCCATTAAAGATAAAGAATT 59.432 33.333 0.00 0.00 36.70 2.17
284 285 7.123355 TGGCCCCATTAAAGATAAAGAATTG 57.877 36.000 0.00 0.00 0.00 2.32
285 286 6.671779 TGGCCCCATTAAAGATAAAGAATTGT 59.328 34.615 0.00 0.00 0.00 2.71
286 287 7.841729 TGGCCCCATTAAAGATAAAGAATTGTA 59.158 33.333 0.00 0.00 0.00 2.41
287 288 8.870116 GGCCCCATTAAAGATAAAGAATTGTAT 58.130 33.333 0.00 0.00 0.00 2.29
288 289 9.696917 GCCCCATTAAAGATAAAGAATTGTATG 57.303 33.333 0.00 0.00 0.00 2.39
306 307 9.528489 AATTGTATGTGGTTCTTATACAAAGGT 57.472 29.630 11.57 1.09 45.16 3.50
307 308 7.915293 TGTATGTGGTTCTTATACAAAGGTG 57.085 36.000 0.00 0.00 35.14 4.00
308 309 7.455058 TGTATGTGGTTCTTATACAAAGGTGT 58.545 34.615 0.00 0.00 42.09 4.16
309 310 8.595421 TGTATGTGGTTCTTATACAAAGGTGTA 58.405 33.333 0.00 0.00 44.29 2.90
312 313 8.927675 TGTGGTTCTTATACAAAGGTGTATTT 57.072 30.769 4.80 0.00 46.74 1.40
313 314 9.357161 TGTGGTTCTTATACAAAGGTGTATTTT 57.643 29.630 4.80 0.00 46.74 1.82
314 315 9.836076 GTGGTTCTTATACAAAGGTGTATTTTC 57.164 33.333 4.80 0.00 46.74 2.29
315 316 9.802039 TGGTTCTTATACAAAGGTGTATTTTCT 57.198 29.630 4.80 0.00 46.74 2.52
324 325 8.301252 ACAAAGGTGTATTTTCTAACCAAAGT 57.699 30.769 0.00 0.00 35.72 2.66
325 326 9.411189 ACAAAGGTGTATTTTCTAACCAAAGTA 57.589 29.630 0.00 0.00 35.72 2.24
340 341 7.764695 AACCAAAGTAAAACAAGTTACATGC 57.235 32.000 0.00 0.00 36.59 4.06
341 342 7.107639 ACCAAAGTAAAACAAGTTACATGCT 57.892 32.000 0.00 0.00 36.59 3.79
342 343 7.552459 ACCAAAGTAAAACAAGTTACATGCTT 58.448 30.769 0.00 0.00 36.59 3.91
343 344 8.688151 ACCAAAGTAAAACAAGTTACATGCTTA 58.312 29.630 0.00 0.00 36.59 3.09
344 345 9.522804 CCAAAGTAAAACAAGTTACATGCTTAA 57.477 29.630 0.00 0.00 36.59 1.85
351 352 8.996024 AAACAAGTTACATGCTTAAAAAGTGT 57.004 26.923 0.00 0.00 0.00 3.55
352 353 7.985634 ACAAGTTACATGCTTAAAAAGTGTG 57.014 32.000 0.00 0.00 0.00 3.82
353 354 7.543756 ACAAGTTACATGCTTAAAAAGTGTGT 58.456 30.769 0.00 0.00 34.35 3.72
354 355 8.679100 ACAAGTTACATGCTTAAAAAGTGTGTA 58.321 29.630 0.00 0.00 32.92 2.90
355 356 9.509855 CAAGTTACATGCTTAAAAAGTGTGTAA 57.490 29.630 0.00 11.48 37.73 2.41
357 358 9.511144 AGTTACATGCTTAAAAAGTGTGTAAAC 57.489 29.630 14.63 11.27 39.61 2.01
358 359 9.291664 GTTACATGCTTAAAAAGTGTGTAAACA 57.708 29.630 14.63 0.00 39.61 2.83
360 361 8.940768 ACATGCTTAAAAAGTGTGTAAACATT 57.059 26.923 0.00 0.00 0.00 2.71
361 362 9.030301 ACATGCTTAAAAAGTGTGTAAACATTC 57.970 29.630 0.00 0.00 0.00 2.67
362 363 9.248291 CATGCTTAAAAAGTGTGTAAACATTCT 57.752 29.630 0.00 0.00 0.00 2.40
392 393 7.862512 AAAAGCATGATTTTTGGAAAGTTCA 57.137 28.000 15.67 0.00 0.00 3.18
393 394 8.454570 AAAAGCATGATTTTTGGAAAGTTCAT 57.545 26.923 15.67 0.00 0.00 2.57
394 395 7.662604 AAGCATGATTTTTGGAAAGTTCATC 57.337 32.000 0.00 0.00 0.00 2.92
395 396 5.865552 AGCATGATTTTTGGAAAGTTCATCG 59.134 36.000 0.00 0.00 0.00 3.84
396 397 5.634859 GCATGATTTTTGGAAAGTTCATCGT 59.365 36.000 0.00 0.00 0.00 3.73
397 398 6.183360 GCATGATTTTTGGAAAGTTCATCGTC 60.183 38.462 0.00 0.00 0.00 4.20
398 399 6.633500 TGATTTTTGGAAAGTTCATCGTCT 57.367 33.333 0.00 0.00 0.00 4.18
399 400 7.737972 TGATTTTTGGAAAGTTCATCGTCTA 57.262 32.000 0.00 0.00 0.00 2.59
400 401 8.335532 TGATTTTTGGAAAGTTCATCGTCTAT 57.664 30.769 0.00 0.00 0.00 1.98
401 402 8.792633 TGATTTTTGGAAAGTTCATCGTCTATT 58.207 29.630 0.00 0.00 0.00 1.73
402 403 9.626045 GATTTTTGGAAAGTTCATCGTCTATTT 57.374 29.630 0.00 0.00 0.00 1.40
414 415 9.929722 GTTCATCGTCTATTTAATAAATGTGCA 57.070 29.630 8.39 0.00 32.38 4.57
419 420 9.103861 TCGTCTATTTAATAAATGTGCATGACA 57.896 29.630 8.39 0.00 39.53 3.58
512 513 9.771915 AAATCATTGTGTGTTTGAAAATTGTTC 57.228 25.926 0.00 0.00 0.00 3.18
513 514 7.895975 TCATTGTGTGTTTGAAAATTGTTCA 57.104 28.000 0.00 0.00 0.00 3.18
514 515 8.489990 TCATTGTGTGTTTGAAAATTGTTCAT 57.510 26.923 0.00 0.00 0.00 2.57
515 516 8.602328 TCATTGTGTGTTTGAAAATTGTTCATC 58.398 29.630 0.00 0.00 0.00 2.92
516 517 7.895975 TTGTGTGTTTGAAAATTGTTCATCA 57.104 28.000 0.00 0.00 0.00 3.07
517 518 7.522901 TGTGTGTTTGAAAATTGTTCATCAG 57.477 32.000 0.00 0.00 0.00 2.90
518 519 6.534436 TGTGTGTTTGAAAATTGTTCATCAGG 59.466 34.615 0.00 0.00 0.00 3.86
519 520 6.534793 GTGTGTTTGAAAATTGTTCATCAGGT 59.465 34.615 0.00 0.00 0.00 4.00
520 521 7.704472 GTGTGTTTGAAAATTGTTCATCAGGTA 59.296 33.333 0.00 0.00 0.00 3.08
521 522 8.420222 TGTGTTTGAAAATTGTTCATCAGGTAT 58.580 29.630 0.00 0.00 0.00 2.73
522 523 9.260002 GTGTTTGAAAATTGTTCATCAGGTATT 57.740 29.630 0.00 0.00 0.00 1.89
551 552 8.785468 AATGTTCAACATATTTTGCAAAAAGC 57.215 26.923 27.10 12.10 37.97 3.51
552 553 7.928103 ATGTTCAACATATTTTGCAAAAAGCA 58.072 26.923 27.10 16.87 44.31 3.91
553 554 8.569641 ATGTTCAACATATTTTGCAAAAAGCAT 58.430 25.926 27.10 18.18 44.93 3.79
561 562 2.897780 GCAAAAAGCATTCACCGCA 58.102 47.368 0.00 0.00 44.79 5.69
562 563 1.431496 GCAAAAAGCATTCACCGCAT 58.569 45.000 0.00 0.00 44.79 4.73
563 564 2.605030 GCAAAAAGCATTCACCGCATA 58.395 42.857 0.00 0.00 44.79 3.14
564 565 3.189285 GCAAAAAGCATTCACCGCATAT 58.811 40.909 0.00 0.00 44.79 1.78
565 566 3.618150 GCAAAAAGCATTCACCGCATATT 59.382 39.130 0.00 0.00 44.79 1.28
566 567 4.803088 GCAAAAAGCATTCACCGCATATTA 59.197 37.500 0.00 0.00 44.79 0.98
567 568 5.051508 GCAAAAAGCATTCACCGCATATTAG 60.052 40.000 0.00 0.00 44.79 1.73
568 569 6.264832 CAAAAAGCATTCACCGCATATTAGA 58.735 36.000 0.00 0.00 0.00 2.10
569 570 6.449635 AAAAGCATTCACCGCATATTAGAA 57.550 33.333 0.00 0.00 0.00 2.10
570 571 6.449635 AAAGCATTCACCGCATATTAGAAA 57.550 33.333 0.00 0.00 0.00 2.52
571 572 6.449635 AAGCATTCACCGCATATTAGAAAA 57.550 33.333 0.00 0.00 0.00 2.29
572 573 6.449635 AGCATTCACCGCATATTAGAAAAA 57.550 33.333 0.00 0.00 0.00 1.94
573 574 7.042797 AGCATTCACCGCATATTAGAAAAAT 57.957 32.000 0.00 0.00 0.00 1.82
574 575 6.919662 AGCATTCACCGCATATTAGAAAAATG 59.080 34.615 0.00 0.00 0.00 2.32
575 576 6.697019 GCATTCACCGCATATTAGAAAAATGT 59.303 34.615 0.00 0.00 0.00 2.71
576 577 7.222611 GCATTCACCGCATATTAGAAAAATGTT 59.777 33.333 0.00 0.00 0.00 2.71
577 578 8.745837 CATTCACCGCATATTAGAAAAATGTTC 58.254 33.333 0.00 0.00 0.00 3.18
578 579 7.384439 TCACCGCATATTAGAAAAATGTTCA 57.616 32.000 0.00 0.00 0.00 3.18
579 580 7.995289 TCACCGCATATTAGAAAAATGTTCAT 58.005 30.769 0.00 0.00 0.00 2.57
580 581 7.914871 TCACCGCATATTAGAAAAATGTTCATG 59.085 33.333 0.00 0.00 0.00 3.07
581 582 7.701924 CACCGCATATTAGAAAAATGTTCATGT 59.298 33.333 0.00 0.00 0.00 3.21
582 583 8.898761 ACCGCATATTAGAAAAATGTTCATGTA 58.101 29.630 0.00 0.00 0.00 2.29
583 584 9.897744 CCGCATATTAGAAAAATGTTCATGTAT 57.102 29.630 0.00 0.00 0.00 2.29
593 594 9.986833 GAAAAATGTTCATGTATAAAAATGCCC 57.013 29.630 0.00 0.00 0.00 5.36
594 595 9.737844 AAAAATGTTCATGTATAAAAATGCCCT 57.262 25.926 0.00 0.00 0.00 5.19
661 662 9.688592 AAAAAGTTCAATGTGCATTTTCAAAAA 57.311 22.222 0.00 0.00 0.00 1.94
662 663 9.857957 AAAAGTTCAATGTGCATTTTCAAAAAT 57.142 22.222 0.00 0.00 39.07 1.82
663 664 9.505995 AAAGTTCAATGTGCATTTTCAAAAATC 57.494 25.926 0.00 0.00 36.52 2.17
664 665 8.441312 AGTTCAATGTGCATTTTCAAAAATCT 57.559 26.923 0.00 0.00 36.52 2.40
665 666 8.895737 AGTTCAATGTGCATTTTCAAAAATCTT 58.104 25.926 0.00 0.00 36.52 2.40
666 667 9.505995 GTTCAATGTGCATTTTCAAAAATCTTT 57.494 25.926 0.00 0.00 36.52 2.52
667 668 9.504710 TTCAATGTGCATTTTCAAAAATCTTTG 57.495 25.926 0.00 3.81 42.88 2.77
742 743 8.861033 AGGGAGAAAAACGTAATAACAAAAAC 57.139 30.769 0.00 0.00 0.00 2.43
744 745 7.096518 GGGAGAAAAACGTAATAACAAAAACCG 60.097 37.037 0.00 0.00 0.00 4.44
746 747 7.479150 AGAAAAACGTAATAACAAAAACCGGA 58.521 30.769 9.46 0.00 0.00 5.14
747 748 7.644945 AGAAAAACGTAATAACAAAAACCGGAG 59.355 33.333 9.46 0.00 0.00 4.63
776 778 5.331876 ACCAAATCGGAAACAGAAAAACA 57.668 34.783 0.00 0.00 38.63 2.83
789 791 7.471657 AACAGAAAAACAAACAAGAAAACGT 57.528 28.000 0.00 0.00 0.00 3.99
790 792 7.471657 ACAGAAAAACAAACAAGAAAACGTT 57.528 28.000 0.00 0.00 0.00 3.99
791 793 7.341446 ACAGAAAAACAAACAAGAAAACGTTG 58.659 30.769 0.00 0.00 0.00 4.10
792 794 7.010645 ACAGAAAAACAAACAAGAAAACGTTGT 59.989 29.630 0.00 0.00 39.89 3.32
797 799 5.395642 ACAAACAAGAAAACGTTGTACTGG 58.604 37.500 0.00 2.05 37.13 4.00
805 807 2.165319 ACGTTGTACTGGAGGAAAGC 57.835 50.000 0.00 0.00 0.00 3.51
846 848 0.948623 TTTCCATCACTGTCGGCGTG 60.949 55.000 6.85 5.78 0.00 5.34
847 849 3.490759 CCATCACTGTCGGCGTGC 61.491 66.667 6.85 1.63 32.54 5.34
848 850 3.490759 CATCACTGTCGGCGTGCC 61.491 66.667 6.85 0.00 32.54 5.01
850 852 4.961511 TCACTGTCGGCGTGCCAC 62.962 66.667 12.06 8.83 35.37 5.01
856 858 4.539083 TCGGCGTGCCACACAGTT 62.539 61.111 12.06 0.00 33.40 3.16
857 859 4.012895 CGGCGTGCCACACAGTTC 62.013 66.667 12.06 0.00 33.40 3.01
859 861 2.607892 GGCGTGCCACACAGTTCTC 61.608 63.158 5.89 0.00 33.40 2.87
860 862 1.887242 GCGTGCCACACAGTTCTCA 60.887 57.895 0.00 0.00 33.40 3.27
861 863 1.436195 GCGTGCCACACAGTTCTCAA 61.436 55.000 0.00 0.00 33.40 3.02
862 864 1.013596 CGTGCCACACAGTTCTCAAA 58.986 50.000 0.00 0.00 33.40 2.69
863 865 1.400142 CGTGCCACACAGTTCTCAAAA 59.600 47.619 0.00 0.00 33.40 2.44
864 866 2.159448 CGTGCCACACAGTTCTCAAAAA 60.159 45.455 0.00 0.00 33.40 1.94
913 926 2.962253 GCGCGACAGTATCTGGGC 60.962 66.667 12.10 3.93 35.51 5.36
976 992 5.052481 TCTCCAGCTACATGAAATCAATCG 58.948 41.667 0.00 0.00 0.00 3.34
984 1000 7.042456 AGCTACATGAAATCAATCGTACATGAC 60.042 37.037 0.00 0.00 38.55 3.06
985 1001 6.983474 ACATGAAATCAATCGTACATGACA 57.017 33.333 0.00 0.00 38.55 3.58
990 1006 6.258507 TGAAATCAATCGTACATGACATCCTG 59.741 38.462 0.00 0.00 0.00 3.86
1002 1018 5.590259 ACATGACATCCTGCACTAAAATACC 59.410 40.000 0.00 0.00 0.00 2.73
1006 1022 1.910671 TCCTGCACTAAAATACCCGGT 59.089 47.619 0.00 0.00 0.00 5.28
1021 1037 3.626924 GGTCGCACCACCACCTCT 61.627 66.667 1.01 0.00 38.42 3.69
1056 1072 1.403780 CCTCACCGCCGGCTATATAAC 60.404 57.143 26.68 0.00 0.00 1.89
1095 1114 4.684134 CCCACCCCCAAGCACAGG 62.684 72.222 0.00 0.00 0.00 4.00
1097 1116 4.601794 CACCCCCAAGCACAGGCA 62.602 66.667 0.00 0.00 44.61 4.75
1098 1117 4.603535 ACCCCCAAGCACAGGCAC 62.604 66.667 0.00 0.00 44.61 5.01
1099 1118 4.601794 CCCCCAAGCACAGGCACA 62.602 66.667 0.00 0.00 44.61 4.57
1100 1119 2.987547 CCCCAAGCACAGGCACAG 60.988 66.667 0.00 0.00 44.61 3.66
1118 1137 2.037772 ACAGCGAACAGGTTGAGATCTT 59.962 45.455 0.00 0.00 0.00 2.40
1134 1161 5.882000 TGAGATCTTGAGAGAGAAGAGACTG 59.118 44.000 0.00 0.00 34.85 3.51
1136 1163 3.760738 TCTTGAGAGAGAAGAGACTGCA 58.239 45.455 0.00 0.00 0.00 4.41
1137 1164 3.758023 TCTTGAGAGAGAAGAGACTGCAG 59.242 47.826 13.48 13.48 0.00 4.41
1160 1187 7.429633 CAGAGATACATACCGAGAGAAAATGT 58.570 38.462 0.00 0.00 0.00 2.71
1333 1363 1.599797 CGAGAACGGCCCAAAAGGT 60.600 57.895 0.00 0.00 38.26 3.50
1404 1446 1.540267 TTGTAATTTGCTCCACCCGG 58.460 50.000 0.00 0.00 0.00 5.73
1405 1447 0.402504 TGTAATTTGCTCCACCCGGT 59.597 50.000 0.00 0.00 0.00 5.28
1425 1475 1.089920 CGAGCAAATGGAGTCCAAGG 58.910 55.000 17.71 9.75 36.95 3.61
1440 1490 1.453155 CAAGGGTATGCTGCTTTCGT 58.547 50.000 0.00 0.00 0.00 3.85
1446 1496 2.608090 GGTATGCTGCTTTCGTAAGGAC 59.392 50.000 0.00 0.00 38.47 3.85
1451 1501 1.728971 CTGCTTTCGTAAGGACTGCTG 59.271 52.381 3.85 0.00 38.47 4.41
1482 1532 3.003480 GTTCTATTCTCACCAGTGCACC 58.997 50.000 14.63 0.00 0.00 5.01
1565 1626 1.862602 GCGTTCGGGTTTGCAAGGAT 61.863 55.000 0.00 0.00 0.00 3.24
1636 1706 7.750229 ACAAAGATGTATCAACATTCACAGT 57.250 32.000 0.00 0.00 46.49 3.55
1637 1707 8.846943 ACAAAGATGTATCAACATTCACAGTA 57.153 30.769 0.00 0.00 46.49 2.74
1638 1708 8.721478 ACAAAGATGTATCAACATTCACAGTAC 58.279 33.333 0.00 0.00 46.49 2.73
1639 1709 7.849804 AAGATGTATCAACATTCACAGTACC 57.150 36.000 0.00 0.00 46.49 3.34
1640 1710 6.946340 AGATGTATCAACATTCACAGTACCA 58.054 36.000 0.00 0.00 46.49 3.25
1710 1781 8.792830 ATGTATTTCCGGGATATTGTAAGATG 57.207 34.615 0.00 0.00 0.00 2.90
1712 1783 8.215050 TGTATTTCCGGGATATTGTAAGATGTT 58.785 33.333 0.00 0.00 0.00 2.71
1713 1784 9.715121 GTATTTCCGGGATATTGTAAGATGTTA 57.285 33.333 0.00 0.00 0.00 2.41
1715 1786 9.807921 ATTTCCGGGATATTGTAAGATGTTATT 57.192 29.630 0.00 0.00 0.00 1.40
1754 3462 4.779819 CGAACGTTCGGTCTAGGG 57.220 61.111 36.53 11.49 46.30 3.53
1755 3463 2.174334 CGAACGTTCGGTCTAGGGA 58.826 57.895 36.53 0.00 46.30 4.20
1756 3464 0.098376 CGAACGTTCGGTCTAGGGAG 59.902 60.000 36.53 10.09 46.30 4.30
1757 3465 0.455005 GAACGTTCGGTCTAGGGAGG 59.545 60.000 13.36 0.00 0.00 4.30
1758 3466 0.969409 AACGTTCGGTCTAGGGAGGG 60.969 60.000 0.00 0.00 0.00 4.30
1759 3467 1.077212 CGTTCGGTCTAGGGAGGGA 60.077 63.158 0.00 0.00 0.00 4.20
1805 3513 1.891150 GGAGTAGTGAAGGACCGAACA 59.109 52.381 0.00 0.00 0.00 3.18
1808 3516 3.725490 AGTAGTGAAGGACCGAACAAAC 58.275 45.455 0.00 0.00 0.00 2.93
1876 3584 4.364817 AACGATCAAACTTGTCGTTACG 57.635 40.909 20.75 0.00 44.60 3.18
2197 4280 6.839124 AAAAGTTGCCATGAAGTGATATGA 57.161 33.333 0.00 0.00 0.00 2.15
2349 4475 5.809051 GCCATGGCAAAAACAAATTTGAAAA 59.191 32.000 32.08 2.06 41.73 2.29
2397 4536 7.906327 ACTAATTTGTAAAAATGGCCATGACT 58.094 30.769 21.63 9.00 0.00 3.41
2406 4545 7.716799 AAAAATGGCCATGACTAACATTCTA 57.283 32.000 21.63 0.00 37.07 2.10
2639 4781 9.884636 AAACTTAATTAAAACAGAAGTTTGCCT 57.115 25.926 10.65 0.00 46.79 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.378582 CCACAAACATGTTATTTCGCTACTT 58.621 36.000 12.39 0.00 0.00 2.24
4 5 5.619086 GCCACAAACATGTTATTTCGCTACT 60.619 40.000 12.39 0.00 0.00 2.57
5 6 4.557301 GCCACAAACATGTTATTTCGCTAC 59.443 41.667 12.39 0.00 0.00 3.58
6 7 4.457603 AGCCACAAACATGTTATTTCGCTA 59.542 37.500 12.39 0.00 0.00 4.26
7 8 3.255642 AGCCACAAACATGTTATTTCGCT 59.744 39.130 12.39 12.11 0.00 4.93
8 9 3.574614 AGCCACAAACATGTTATTTCGC 58.425 40.909 12.39 10.07 0.00 4.70
9 10 6.019156 ACAAAAGCCACAAACATGTTATTTCG 60.019 34.615 12.39 1.22 0.00 3.46
10 11 7.125113 CACAAAAGCCACAAACATGTTATTTC 58.875 34.615 12.39 0.88 0.00 2.17
11 12 6.597280 ACACAAAAGCCACAAACATGTTATTT 59.403 30.769 12.39 4.13 0.00 1.40
12 13 6.112058 ACACAAAAGCCACAAACATGTTATT 58.888 32.000 12.39 0.00 0.00 1.40
13 14 5.669477 ACACAAAAGCCACAAACATGTTAT 58.331 33.333 12.39 0.00 0.00 1.89
14 15 5.078411 ACACAAAAGCCACAAACATGTTA 57.922 34.783 12.39 0.00 0.00 2.41
15 16 3.936564 ACACAAAAGCCACAAACATGTT 58.063 36.364 4.92 4.92 0.00 2.71
16 17 3.608316 ACACAAAAGCCACAAACATGT 57.392 38.095 0.00 0.00 0.00 3.21
17 18 5.347342 TCTAACACAAAAGCCACAAACATG 58.653 37.500 0.00 0.00 0.00 3.21
18 19 5.590530 TCTAACACAAAAGCCACAAACAT 57.409 34.783 0.00 0.00 0.00 2.71
19 20 4.676723 GCTCTAACACAAAAGCCACAAACA 60.677 41.667 0.00 0.00 0.00 2.83
20 21 3.796717 GCTCTAACACAAAAGCCACAAAC 59.203 43.478 0.00 0.00 0.00 2.93
21 22 4.040445 GCTCTAACACAAAAGCCACAAA 57.960 40.909 0.00 0.00 0.00 2.83
22 23 3.708563 GCTCTAACACAAAAGCCACAA 57.291 42.857 0.00 0.00 0.00 3.33
27 28 1.602377 ACGTGGCTCTAACACAAAAGC 59.398 47.619 0.00 0.00 38.74 3.51
28 29 3.963383 AACGTGGCTCTAACACAAAAG 57.037 42.857 0.00 0.00 38.74 2.27
29 30 3.440872 ACAAACGTGGCTCTAACACAAAA 59.559 39.130 0.00 0.00 38.74 2.44
30 31 3.011119 ACAAACGTGGCTCTAACACAAA 58.989 40.909 0.00 0.00 38.74 2.83
31 32 2.634600 ACAAACGTGGCTCTAACACAA 58.365 42.857 0.00 0.00 38.74 3.33
32 33 2.319136 ACAAACGTGGCTCTAACACA 57.681 45.000 0.00 0.00 38.74 3.72
33 34 2.610374 TCAACAAACGTGGCTCTAACAC 59.390 45.455 0.00 0.00 35.55 3.32
34 35 2.907634 TCAACAAACGTGGCTCTAACA 58.092 42.857 0.00 0.00 0.00 2.41
35 36 3.955771 TTCAACAAACGTGGCTCTAAC 57.044 42.857 0.00 0.00 0.00 2.34
36 37 6.811253 AATATTCAACAAACGTGGCTCTAA 57.189 33.333 0.00 0.00 0.00 2.10
37 38 7.551262 ACATAATATTCAACAAACGTGGCTCTA 59.449 33.333 0.00 0.00 0.00 2.43
38 39 6.374333 ACATAATATTCAACAAACGTGGCTCT 59.626 34.615 0.00 0.00 0.00 4.09
39 40 6.551736 ACATAATATTCAACAAACGTGGCTC 58.448 36.000 0.00 0.00 0.00 4.70
40 41 6.509418 ACATAATATTCAACAAACGTGGCT 57.491 33.333 0.00 0.00 0.00 4.75
41 42 7.327275 TGAAACATAATATTCAACAAACGTGGC 59.673 33.333 0.00 0.00 32.89 5.01
42 43 8.735303 TGAAACATAATATTCAACAAACGTGG 57.265 30.769 0.00 0.00 32.89 4.94
51 52 9.979578 AAGTGCTTGTTGAAACATAATATTCAA 57.020 25.926 0.00 0.00 41.78 2.69
56 57 9.853555 CCAATAAGTGCTTGTTGAAACATAATA 57.146 29.630 18.61 0.00 42.04 0.98
57 58 7.818930 CCCAATAAGTGCTTGTTGAAACATAAT 59.181 33.333 18.61 0.00 42.04 1.28
58 59 7.151308 CCCAATAAGTGCTTGTTGAAACATAA 58.849 34.615 18.61 0.00 42.04 1.90
59 60 6.295011 CCCCAATAAGTGCTTGTTGAAACATA 60.295 38.462 18.61 0.00 42.04 2.29
60 61 5.511202 CCCCAATAAGTGCTTGTTGAAACAT 60.511 40.000 18.61 0.00 42.04 2.71
61 62 4.202202 CCCCAATAAGTGCTTGTTGAAACA 60.202 41.667 18.61 0.00 42.04 2.83
62 63 4.038642 TCCCCAATAAGTGCTTGTTGAAAC 59.961 41.667 18.61 0.00 42.04 2.78
63 64 4.219115 TCCCCAATAAGTGCTTGTTGAAA 58.781 39.130 18.61 5.20 42.04 2.69
64 65 3.838565 TCCCCAATAAGTGCTTGTTGAA 58.161 40.909 18.61 5.47 42.04 2.69
65 66 3.517296 TCCCCAATAAGTGCTTGTTGA 57.483 42.857 18.61 1.52 42.04 3.18
66 67 5.894807 CTTATCCCCAATAAGTGCTTGTTG 58.105 41.667 12.49 12.49 41.30 3.33
76 77 5.640158 AACGATCCACTTATCCCCAATAA 57.360 39.130 0.00 0.00 0.00 1.40
77 78 5.373222 CAAACGATCCACTTATCCCCAATA 58.627 41.667 0.00 0.00 0.00 1.90
78 79 4.207165 CAAACGATCCACTTATCCCCAAT 58.793 43.478 0.00 0.00 0.00 3.16
79 80 3.616219 CAAACGATCCACTTATCCCCAA 58.384 45.455 0.00 0.00 0.00 4.12
80 81 2.092646 CCAAACGATCCACTTATCCCCA 60.093 50.000 0.00 0.00 0.00 4.96
81 82 2.572290 CCAAACGATCCACTTATCCCC 58.428 52.381 0.00 0.00 0.00 4.81
82 83 2.092592 ACCCAAACGATCCACTTATCCC 60.093 50.000 0.00 0.00 0.00 3.85
83 84 3.277142 ACCCAAACGATCCACTTATCC 57.723 47.619 0.00 0.00 0.00 2.59
84 85 4.258543 TGAACCCAAACGATCCACTTATC 58.741 43.478 0.00 0.00 0.00 1.75
85 86 4.295141 TGAACCCAAACGATCCACTTAT 57.705 40.909 0.00 0.00 0.00 1.73
86 87 3.773418 TGAACCCAAACGATCCACTTA 57.227 42.857 0.00 0.00 0.00 2.24
87 88 2.649531 TGAACCCAAACGATCCACTT 57.350 45.000 0.00 0.00 0.00 3.16
88 89 2.879103 ATGAACCCAAACGATCCACT 57.121 45.000 0.00 0.00 0.00 4.00
89 90 3.574614 CAAATGAACCCAAACGATCCAC 58.425 45.455 0.00 0.00 0.00 4.02
90 91 2.029470 GCAAATGAACCCAAACGATCCA 60.029 45.455 0.00 0.00 0.00 3.41
91 92 2.231235 AGCAAATGAACCCAAACGATCC 59.769 45.455 0.00 0.00 0.00 3.36
92 93 3.501950 GAGCAAATGAACCCAAACGATC 58.498 45.455 0.00 0.00 0.00 3.69
93 94 2.231235 GGAGCAAATGAACCCAAACGAT 59.769 45.455 0.00 0.00 0.00 3.73
94 95 1.611491 GGAGCAAATGAACCCAAACGA 59.389 47.619 0.00 0.00 0.00 3.85
95 96 1.339610 TGGAGCAAATGAACCCAAACG 59.660 47.619 0.00 0.00 0.00 3.60
96 97 3.467374 TTGGAGCAAATGAACCCAAAC 57.533 42.857 0.00 0.00 34.33 2.93
97 98 4.703379 ATTTGGAGCAAATGAACCCAAA 57.297 36.364 0.00 0.00 46.75 3.28
106 107 2.610232 GCCGTCAACATTTGGAGCAAAT 60.610 45.455 0.00 0.00 43.71 2.32
107 108 1.269517 GCCGTCAACATTTGGAGCAAA 60.270 47.619 0.00 0.00 37.75 3.68
108 109 0.313672 GCCGTCAACATTTGGAGCAA 59.686 50.000 0.00 0.00 0.00 3.91
109 110 1.851021 CGCCGTCAACATTTGGAGCA 61.851 55.000 0.00 0.00 0.00 4.26
110 111 1.154225 CGCCGTCAACATTTGGAGC 60.154 57.895 0.00 0.00 0.00 4.70
111 112 0.953471 TCCGCCGTCAACATTTGGAG 60.953 55.000 0.00 0.00 0.00 3.86
112 113 0.322098 ATCCGCCGTCAACATTTGGA 60.322 50.000 0.00 0.00 0.00 3.53
113 114 1.374560 TATCCGCCGTCAACATTTGG 58.625 50.000 0.00 0.00 0.00 3.28
114 115 2.477189 GGTTATCCGCCGTCAACATTTG 60.477 50.000 0.00 0.00 0.00 2.32
115 116 1.741145 GGTTATCCGCCGTCAACATTT 59.259 47.619 0.00 0.00 0.00 2.32
116 117 1.065709 AGGTTATCCGCCGTCAACATT 60.066 47.619 0.00 0.00 39.05 2.71
117 118 0.539986 AGGTTATCCGCCGTCAACAT 59.460 50.000 0.00 0.00 39.05 2.71
118 119 0.108520 GAGGTTATCCGCCGTCAACA 60.109 55.000 0.00 0.00 39.05 3.33
119 120 0.808847 GGAGGTTATCCGCCGTCAAC 60.809 60.000 0.00 0.00 43.32 3.18
120 121 1.518774 GGAGGTTATCCGCCGTCAA 59.481 57.895 0.00 0.00 43.32 3.18
121 122 3.213264 GGAGGTTATCCGCCGTCA 58.787 61.111 0.00 0.00 43.32 4.35
133 134 0.250513 GTCTTCATCAAGCGGGAGGT 59.749 55.000 0.00 0.00 46.35 3.85
134 135 0.539051 AGTCTTCATCAAGCGGGAGG 59.461 55.000 0.00 0.00 0.00 4.30
135 136 1.480137 AGAGTCTTCATCAAGCGGGAG 59.520 52.381 0.00 0.00 0.00 4.30
136 137 1.561643 AGAGTCTTCATCAAGCGGGA 58.438 50.000 0.00 0.00 0.00 5.14
137 138 2.393271 AAGAGTCTTCATCAAGCGGG 57.607 50.000 0.00 0.00 0.00 6.13
138 139 2.675348 GGAAAGAGTCTTCATCAAGCGG 59.325 50.000 5.70 0.00 0.00 5.52
139 140 2.346847 CGGAAAGAGTCTTCATCAAGCG 59.653 50.000 5.70 0.00 0.00 4.68
140 141 2.675348 CCGGAAAGAGTCTTCATCAAGC 59.325 50.000 5.70 0.00 0.00 4.01
141 142 3.681897 CACCGGAAAGAGTCTTCATCAAG 59.318 47.826 9.46 0.00 0.00 3.02
142 143 3.557054 CCACCGGAAAGAGTCTTCATCAA 60.557 47.826 9.46 0.00 0.00 2.57
143 144 2.028112 CCACCGGAAAGAGTCTTCATCA 60.028 50.000 9.46 0.00 0.00 3.07
144 145 2.233922 TCCACCGGAAAGAGTCTTCATC 59.766 50.000 9.46 0.70 0.00 2.92
145 146 2.257207 TCCACCGGAAAGAGTCTTCAT 58.743 47.619 9.46 0.00 0.00 2.57
146 147 1.712056 TCCACCGGAAAGAGTCTTCA 58.288 50.000 9.46 0.00 0.00 3.02
147 148 2.689646 CTTCCACCGGAAAGAGTCTTC 58.310 52.381 9.46 0.01 41.54 2.87
148 149 1.270893 GCTTCCACCGGAAAGAGTCTT 60.271 52.381 9.46 0.00 41.54 3.01
149 150 0.321996 GCTTCCACCGGAAAGAGTCT 59.678 55.000 9.46 0.00 41.54 3.24
150 151 0.321996 AGCTTCCACCGGAAAGAGTC 59.678 55.000 9.46 0.00 41.54 3.36
151 152 0.321996 GAGCTTCCACCGGAAAGAGT 59.678 55.000 9.46 0.00 41.54 3.24
152 153 0.321671 TGAGCTTCCACCGGAAAGAG 59.678 55.000 9.46 1.44 41.54 2.85
153 154 0.034896 GTGAGCTTCCACCGGAAAGA 59.965 55.000 9.46 0.00 41.54 2.52
154 155 0.955919 GGTGAGCTTCCACCGGAAAG 60.956 60.000 9.46 10.07 46.00 2.62
155 156 1.072505 GGTGAGCTTCCACCGGAAA 59.927 57.895 9.46 0.00 46.00 3.13
156 157 2.747686 GGTGAGCTTCCACCGGAA 59.252 61.111 9.46 0.00 46.00 4.30
161 162 1.273327 CCCAAATTGGTGAGCTTCCAC 59.727 52.381 11.52 4.21 35.17 4.02
162 163 1.133199 ACCCAAATTGGTGAGCTTCCA 60.133 47.619 11.52 7.38 37.20 3.53
163 164 1.632589 ACCCAAATTGGTGAGCTTCC 58.367 50.000 11.52 0.00 37.20 3.46
171 172 5.823861 AATAGAAAAGCACCCAAATTGGT 57.176 34.783 11.52 0.00 39.96 3.67
172 173 7.386059 ACTTAATAGAAAAGCACCCAAATTGG 58.614 34.615 4.74 4.74 37.25 3.16
173 174 8.831715 AACTTAATAGAAAAGCACCCAAATTG 57.168 30.769 0.00 0.00 0.00 2.32
174 175 9.271828 CAAACTTAATAGAAAAGCACCCAAATT 57.728 29.630 0.00 0.00 0.00 1.82
175 176 7.387673 GCAAACTTAATAGAAAAGCACCCAAAT 59.612 33.333 0.00 0.00 0.00 2.32
176 177 6.704050 GCAAACTTAATAGAAAAGCACCCAAA 59.296 34.615 0.00 0.00 0.00 3.28
177 178 6.220201 GCAAACTTAATAGAAAAGCACCCAA 58.780 36.000 0.00 0.00 0.00 4.12
178 179 5.563867 CGCAAACTTAATAGAAAAGCACCCA 60.564 40.000 0.00 0.00 0.00 4.51
179 180 4.857037 CGCAAACTTAATAGAAAAGCACCC 59.143 41.667 0.00 0.00 0.00 4.61
180 181 5.458015 ACGCAAACTTAATAGAAAAGCACC 58.542 37.500 0.00 0.00 0.00 5.01
181 182 6.245710 CGTACGCAAACTTAATAGAAAAGCAC 59.754 38.462 0.52 0.00 0.00 4.40
182 183 6.073657 ACGTACGCAAACTTAATAGAAAAGCA 60.074 34.615 16.72 0.00 0.00 3.91
183 184 6.301861 ACGTACGCAAACTTAATAGAAAAGC 58.698 36.000 16.72 0.00 0.00 3.51
184 185 7.267600 CCAACGTACGCAAACTTAATAGAAAAG 59.732 37.037 16.72 0.00 0.00 2.27
185 186 7.070798 CCAACGTACGCAAACTTAATAGAAAA 58.929 34.615 16.72 0.00 0.00 2.29
186 187 6.202570 ACCAACGTACGCAAACTTAATAGAAA 59.797 34.615 16.72 0.00 0.00 2.52
187 188 5.695816 ACCAACGTACGCAAACTTAATAGAA 59.304 36.000 16.72 0.00 0.00 2.10
188 189 5.229423 ACCAACGTACGCAAACTTAATAGA 58.771 37.500 16.72 0.00 0.00 1.98
189 190 5.520022 ACCAACGTACGCAAACTTAATAG 57.480 39.130 16.72 0.00 0.00 1.73
190 191 7.593875 AATACCAACGTACGCAAACTTAATA 57.406 32.000 16.72 0.00 0.00 0.98
191 192 6.484818 AATACCAACGTACGCAAACTTAAT 57.515 33.333 16.72 0.00 0.00 1.40
192 193 5.921004 AATACCAACGTACGCAAACTTAA 57.079 34.783 16.72 0.00 0.00 1.85
193 194 8.694975 TTATAATACCAACGTACGCAAACTTA 57.305 30.769 16.72 7.16 0.00 2.24
194 195 7.593875 TTATAATACCAACGTACGCAAACTT 57.406 32.000 16.72 5.08 0.00 2.66
195 196 7.593875 TTTATAATACCAACGTACGCAAACT 57.406 32.000 16.72 0.00 0.00 2.66
196 197 8.652592 TTTTTATAATACCAACGTACGCAAAC 57.347 30.769 16.72 0.00 0.00 2.93
197 198 9.837525 AATTTTTATAATACCAACGTACGCAAA 57.162 25.926 16.72 0.00 0.00 3.68
198 199 9.275231 CAATTTTTATAATACCAACGTACGCAA 57.725 29.630 16.72 0.00 0.00 4.85
199 200 7.909121 CCAATTTTTATAATACCAACGTACGCA 59.091 33.333 16.72 0.00 0.00 5.24
200 201 8.121708 TCCAATTTTTATAATACCAACGTACGC 58.878 33.333 16.72 0.00 0.00 4.42
204 205 9.111613 TCGATCCAATTTTTATAATACCAACGT 57.888 29.630 0.00 0.00 0.00 3.99
205 206 9.377383 GTCGATCCAATTTTTATAATACCAACG 57.623 33.333 0.00 0.00 0.00 4.10
239 240 6.705825 GGCCATCAACTTAAGAAACATTTGTT 59.294 34.615 10.09 0.00 40.50 2.83
240 241 6.223120 GGCCATCAACTTAAGAAACATTTGT 58.777 36.000 10.09 0.00 0.00 2.83
241 242 5.639082 GGGCCATCAACTTAAGAAACATTTG 59.361 40.000 10.09 2.20 0.00 2.32
242 243 5.279960 GGGGCCATCAACTTAAGAAACATTT 60.280 40.000 10.09 0.00 0.00 2.32
243 244 4.222810 GGGGCCATCAACTTAAGAAACATT 59.777 41.667 10.09 0.00 0.00 2.71
244 245 3.769300 GGGGCCATCAACTTAAGAAACAT 59.231 43.478 10.09 0.00 0.00 2.71
245 246 3.161866 GGGGCCATCAACTTAAGAAACA 58.838 45.455 10.09 0.00 0.00 2.83
246 247 3.161866 TGGGGCCATCAACTTAAGAAAC 58.838 45.455 10.09 0.00 0.00 2.78
247 248 3.534357 TGGGGCCATCAACTTAAGAAA 57.466 42.857 10.09 0.00 0.00 2.52
248 249 3.756082 ATGGGGCCATCAACTTAAGAA 57.244 42.857 10.09 0.00 29.42 2.52
249 250 3.756082 AATGGGGCCATCAACTTAAGA 57.244 42.857 10.09 0.00 35.31 2.10
250 251 5.656416 TCTTTAATGGGGCCATCAACTTAAG 59.344 40.000 4.39 0.00 35.31 1.85
251 252 5.584913 TCTTTAATGGGGCCATCAACTTAA 58.415 37.500 4.39 2.83 35.31 1.85
252 253 5.199982 TCTTTAATGGGGCCATCAACTTA 57.800 39.130 4.39 0.00 35.31 2.24
253 254 4.059773 TCTTTAATGGGGCCATCAACTT 57.940 40.909 4.39 0.00 35.31 2.66
254 255 3.756082 TCTTTAATGGGGCCATCAACT 57.244 42.857 4.39 0.00 35.31 3.16
255 256 6.323739 TCTTTATCTTTAATGGGGCCATCAAC 59.676 38.462 4.39 0.00 35.31 3.18
256 257 6.439487 TCTTTATCTTTAATGGGGCCATCAA 58.561 36.000 4.39 0.00 35.31 2.57
257 258 6.024563 TCTTTATCTTTAATGGGGCCATCA 57.975 37.500 4.39 2.02 35.31 3.07
258 259 6.976934 TTCTTTATCTTTAATGGGGCCATC 57.023 37.500 4.39 0.00 35.31 3.51
259 260 7.348011 ACAATTCTTTATCTTTAATGGGGCCAT 59.652 33.333 4.39 0.00 38.46 4.40
260 261 6.671779 ACAATTCTTTATCTTTAATGGGGCCA 59.328 34.615 4.39 0.00 0.00 5.36
261 262 7.124573 ACAATTCTTTATCTTTAATGGGGCC 57.875 36.000 0.00 0.00 0.00 5.80
262 263 9.696917 CATACAATTCTTTATCTTTAATGGGGC 57.303 33.333 0.00 0.00 0.00 5.80
280 281 9.528489 ACCTTTGTATAAGAACCACATACAATT 57.472 29.630 7.09 0.00 41.98 2.32
281 282 8.956426 CACCTTTGTATAAGAACCACATACAAT 58.044 33.333 7.09 0.00 41.98 2.71
282 283 7.940137 ACACCTTTGTATAAGAACCACATACAA 59.060 33.333 3.02 3.02 41.18 2.41
283 284 7.455058 ACACCTTTGTATAAGAACCACATACA 58.545 34.615 0.00 0.00 32.60 2.29
284 285 7.916914 ACACCTTTGTATAAGAACCACATAC 57.083 36.000 0.00 0.00 32.60 2.39
286 287 9.528489 AAATACACCTTTGTATAAGAACCACAT 57.472 29.630 0.00 0.00 46.45 3.21
287 288 8.927675 AAATACACCTTTGTATAAGAACCACA 57.072 30.769 0.00 0.00 46.45 4.17
288 289 9.836076 GAAAATACACCTTTGTATAAGAACCAC 57.164 33.333 0.00 0.00 46.45 4.16
289 290 9.802039 AGAAAATACACCTTTGTATAAGAACCA 57.198 29.630 0.00 0.00 46.45 3.67
298 299 9.411189 ACTTTGGTTAGAAAATACACCTTTGTA 57.589 29.630 0.00 0.00 42.53 2.41
299 300 8.301252 ACTTTGGTTAGAAAATACACCTTTGT 57.699 30.769 0.00 0.00 40.02 2.83
314 315 8.964150 GCATGTAACTTGTTTTACTTTGGTTAG 58.036 33.333 0.00 0.00 33.73 2.34
315 316 8.688151 AGCATGTAACTTGTTTTACTTTGGTTA 58.312 29.630 0.00 0.00 33.73 2.85
316 317 7.552459 AGCATGTAACTTGTTTTACTTTGGTT 58.448 30.769 0.00 0.00 33.73 3.67
317 318 7.107639 AGCATGTAACTTGTTTTACTTTGGT 57.892 32.000 0.00 0.00 33.73 3.67
318 319 9.522804 TTAAGCATGTAACTTGTTTTACTTTGG 57.477 29.630 0.00 0.00 33.73 3.28
325 326 9.430623 ACACTTTTTAAGCATGTAACTTGTTTT 57.569 25.926 0.00 0.00 0.00 2.43
326 327 8.868916 CACACTTTTTAAGCATGTAACTTGTTT 58.131 29.630 0.00 0.00 0.00 2.83
327 328 8.032451 ACACACTTTTTAAGCATGTAACTTGTT 58.968 29.630 0.00 0.00 30.59 2.83
328 329 7.543756 ACACACTTTTTAAGCATGTAACTTGT 58.456 30.769 0.00 0.00 30.59 3.16
329 330 7.985634 ACACACTTTTTAAGCATGTAACTTG 57.014 32.000 0.00 0.00 30.59 3.16
331 332 9.511144 GTTTACACACTTTTTAAGCATGTAACT 57.489 29.630 12.17 0.00 39.68 2.24
332 333 9.291664 TGTTTACACACTTTTTAAGCATGTAAC 57.708 29.630 12.17 9.70 39.68 2.50
335 336 8.940768 AATGTTTACACACTTTTTAAGCATGT 57.059 26.923 0.00 0.00 35.03 3.21
336 337 9.248291 AGAATGTTTACACACTTTTTAAGCATG 57.752 29.630 0.00 0.00 35.03 4.06
366 367 9.388506 TGAACTTTCCAAAAATCATGCTTTTTA 57.611 25.926 17.12 3.42 36.45 1.52
367 368 8.278729 TGAACTTTCCAAAAATCATGCTTTTT 57.721 26.923 12.95 12.95 38.51 1.94
368 369 7.862512 TGAACTTTCCAAAAATCATGCTTTT 57.137 28.000 1.44 1.44 0.00 2.27
369 370 7.095523 CGATGAACTTTCCAAAAATCATGCTTT 60.096 33.333 0.00 0.00 0.00 3.51
370 371 6.366877 CGATGAACTTTCCAAAAATCATGCTT 59.633 34.615 0.00 0.00 0.00 3.91
371 372 5.865552 CGATGAACTTTCCAAAAATCATGCT 59.134 36.000 0.00 0.00 0.00 3.79
372 373 5.634859 ACGATGAACTTTCCAAAAATCATGC 59.365 36.000 0.00 0.00 0.00 4.06
373 374 7.086376 AGACGATGAACTTTCCAAAAATCATG 58.914 34.615 0.00 0.00 0.00 3.07
374 375 7.219484 AGACGATGAACTTTCCAAAAATCAT 57.781 32.000 0.00 0.00 0.00 2.45
375 376 6.633500 AGACGATGAACTTTCCAAAAATCA 57.367 33.333 0.00 0.00 0.00 2.57
376 377 9.626045 AAATAGACGATGAACTTTCCAAAAATC 57.374 29.630 0.00 0.00 0.00 2.17
388 389 9.929722 TGCACATTTATTAAATAGACGATGAAC 57.070 29.630 1.41 0.00 0.00 3.18
393 394 9.103861 TGTCATGCACATTTATTAAATAGACGA 57.896 29.630 1.41 0.00 0.00 4.20
394 395 9.882996 ATGTCATGCACATTTATTAAATAGACG 57.117 29.630 1.41 0.00 43.89 4.18
486 487 9.771915 GAACAATTTTCAAACACACAATGATTT 57.228 25.926 0.00 0.00 0.00 2.17
487 488 8.944029 TGAACAATTTTCAAACACACAATGATT 58.056 25.926 0.00 0.00 0.00 2.57
488 489 8.489990 TGAACAATTTTCAAACACACAATGAT 57.510 26.923 0.00 0.00 0.00 2.45
489 490 7.895975 TGAACAATTTTCAAACACACAATGA 57.104 28.000 0.00 0.00 0.00 2.57
490 491 8.388853 TGATGAACAATTTTCAAACACACAATG 58.611 29.630 7.01 0.00 31.55 2.82
491 492 8.489990 TGATGAACAATTTTCAAACACACAAT 57.510 26.923 7.01 0.00 31.55 2.71
492 493 7.064371 CCTGATGAACAATTTTCAAACACACAA 59.936 33.333 7.01 0.00 31.55 3.33
493 494 6.534436 CCTGATGAACAATTTTCAAACACACA 59.466 34.615 7.01 0.00 31.55 3.72
494 495 6.534793 ACCTGATGAACAATTTTCAAACACAC 59.465 34.615 7.01 0.00 31.55 3.82
495 496 6.638610 ACCTGATGAACAATTTTCAAACACA 58.361 32.000 7.01 0.00 31.55 3.72
496 497 8.816640 ATACCTGATGAACAATTTTCAAACAC 57.183 30.769 7.01 2.64 31.55 3.32
525 526 9.235537 GCTTTTTGCAAAATATGTTGAACATTT 57.764 25.926 24.39 5.74 39.62 2.32
526 527 8.785468 GCTTTTTGCAAAATATGTTGAACATT 57.215 26.923 24.39 0.00 39.62 2.71
543 544 1.431496 ATGCGGTGAATGCTTTTTGC 58.569 45.000 0.00 0.00 43.25 3.68
544 545 6.264832 TCTAATATGCGGTGAATGCTTTTTG 58.735 36.000 0.00 0.00 0.00 2.44
545 546 6.449635 TCTAATATGCGGTGAATGCTTTTT 57.550 33.333 0.00 0.00 0.00 1.94
546 547 6.449635 TTCTAATATGCGGTGAATGCTTTT 57.550 33.333 0.00 0.00 0.00 2.27
547 548 6.449635 TTTCTAATATGCGGTGAATGCTTT 57.550 33.333 0.00 0.00 0.00 3.51
548 549 6.449635 TTTTCTAATATGCGGTGAATGCTT 57.550 33.333 0.00 0.00 0.00 3.91
549 550 6.449635 TTTTTCTAATATGCGGTGAATGCT 57.550 33.333 0.00 0.00 0.00 3.79
550 551 6.697019 ACATTTTTCTAATATGCGGTGAATGC 59.303 34.615 0.00 0.00 0.00 3.56
551 552 8.633075 AACATTTTTCTAATATGCGGTGAATG 57.367 30.769 0.00 0.00 0.00 2.67
552 553 8.465999 TGAACATTTTTCTAATATGCGGTGAAT 58.534 29.630 0.00 0.00 0.00 2.57
553 554 7.821652 TGAACATTTTTCTAATATGCGGTGAA 58.178 30.769 0.00 0.00 0.00 3.18
554 555 7.384439 TGAACATTTTTCTAATATGCGGTGA 57.616 32.000 0.00 0.00 0.00 4.02
555 556 7.701924 ACATGAACATTTTTCTAATATGCGGTG 59.298 33.333 0.00 0.00 0.00 4.94
556 557 7.771183 ACATGAACATTTTTCTAATATGCGGT 58.229 30.769 0.00 0.00 0.00 5.68
557 558 9.897744 ATACATGAACATTTTTCTAATATGCGG 57.102 29.630 0.00 0.00 0.00 5.69
567 568 9.986833 GGGCATTTTTATACATGAACATTTTTC 57.013 29.630 0.00 0.00 0.00 2.29
568 569 9.737844 AGGGCATTTTTATACATGAACATTTTT 57.262 25.926 0.00 0.00 0.00 1.94
635 636 9.688592 TTTTTGAAAATGCACATTGAACTTTTT 57.311 22.222 0.00 0.00 0.00 1.94
636 637 9.857957 ATTTTTGAAAATGCACATTGAACTTTT 57.142 22.222 0.00 0.00 37.24 2.27
637 638 9.505995 GATTTTTGAAAATGCACATTGAACTTT 57.494 25.926 6.44 0.00 38.64 2.66
638 639 8.895737 AGATTTTTGAAAATGCACATTGAACTT 58.104 25.926 6.44 0.00 38.64 2.66
639 640 8.441312 AGATTTTTGAAAATGCACATTGAACT 57.559 26.923 6.44 0.00 38.64 3.01
640 641 9.505995 AAAGATTTTTGAAAATGCACATTGAAC 57.494 25.926 6.44 0.00 38.64 3.18
641 642 9.504710 CAAAGATTTTTGAAAATGCACATTGAA 57.495 25.926 2.58 0.00 45.21 2.69
703 704 9.685828 CGTTTTTCTCCCTTATTTTTAATCACA 57.314 29.630 0.00 0.00 0.00 3.58
704 705 9.687210 ACGTTTTTCTCCCTTATTTTTAATCAC 57.313 29.630 0.00 0.00 0.00 3.06
716 717 9.304731 GTTTTTGTTATTACGTTTTTCTCCCTT 57.695 29.630 0.00 0.00 0.00 3.95
717 718 7.922278 GGTTTTTGTTATTACGTTTTTCTCCCT 59.078 33.333 0.00 0.00 0.00 4.20
718 719 7.096518 CGGTTTTTGTTATTACGTTTTTCTCCC 60.097 37.037 0.00 0.00 0.00 4.30
719 720 7.096518 CCGGTTTTTGTTATTACGTTTTTCTCC 60.097 37.037 0.00 0.00 0.00 3.71
720 721 7.643371 TCCGGTTTTTGTTATTACGTTTTTCTC 59.357 33.333 0.00 0.00 0.00 2.87
721 722 7.479150 TCCGGTTTTTGTTATTACGTTTTTCT 58.521 30.769 0.00 0.00 0.00 2.52
722 723 7.431960 ACTCCGGTTTTTGTTATTACGTTTTTC 59.568 33.333 0.00 0.00 0.00 2.29
723 724 7.220491 CACTCCGGTTTTTGTTATTACGTTTTT 59.780 33.333 0.00 0.00 0.00 1.94
733 734 5.047519 TGGTTTTTCACTCCGGTTTTTGTTA 60.048 36.000 0.00 0.00 0.00 2.41
742 743 2.351350 CCGATTTGGTTTTTCACTCCGG 60.351 50.000 0.00 0.00 0.00 5.14
744 745 4.577834 TTCCGATTTGGTTTTTCACTCC 57.422 40.909 0.00 0.00 39.52 3.85
746 747 5.126384 TCTGTTTCCGATTTGGTTTTTCACT 59.874 36.000 0.00 0.00 39.52 3.41
747 748 5.344884 TCTGTTTCCGATTTGGTTTTTCAC 58.655 37.500 0.00 0.00 39.52 3.18
776 778 5.163693 CCTCCAGTACAACGTTTTCTTGTTT 60.164 40.000 0.00 0.00 33.79 2.83
789 791 0.696501 GGGGCTTTCCTCCAGTACAA 59.303 55.000 0.00 0.00 35.33 2.41
790 792 2.383608 GGGGCTTTCCTCCAGTACA 58.616 57.895 0.00 0.00 35.33 2.90
867 869 1.355210 CTCCAACGTGCACGCTTTT 59.645 52.632 37.35 22.36 44.43 2.27
868 870 3.022287 CTCCAACGTGCACGCTTT 58.978 55.556 37.35 23.11 44.43 3.51
869 871 3.649986 GCTCCAACGTGCACGCTT 61.650 61.111 37.35 26.17 44.43 4.68
913 926 2.118683 CAAATCACACACGCAAACCTG 58.881 47.619 0.00 0.00 0.00 4.00
976 992 6.683974 ATTTTAGTGCAGGATGTCATGTAC 57.316 37.500 7.63 7.63 42.15 2.90
984 1000 2.878406 CCGGGTATTTTAGTGCAGGATG 59.122 50.000 0.00 0.00 40.87 3.51
985 1001 2.508300 ACCGGGTATTTTAGTGCAGGAT 59.492 45.455 6.32 0.00 0.00 3.24
990 1006 0.654160 GCGACCGGGTATTTTAGTGC 59.346 55.000 6.32 0.00 0.00 4.40
1006 1022 3.311110 GGAGAGGTGGTGGTGCGA 61.311 66.667 0.00 0.00 0.00 5.10
1095 1114 0.880278 TCTCAACCTGTTCGCTGTGC 60.880 55.000 0.00 0.00 0.00 4.57
1096 1115 1.728971 GATCTCAACCTGTTCGCTGTG 59.271 52.381 0.00 0.00 0.00 3.66
1097 1116 1.620819 AGATCTCAACCTGTTCGCTGT 59.379 47.619 0.00 0.00 0.00 4.40
1098 1117 2.376808 AGATCTCAACCTGTTCGCTG 57.623 50.000 0.00 0.00 0.00 5.18
1099 1118 2.300152 TCAAGATCTCAACCTGTTCGCT 59.700 45.455 0.00 0.00 0.00 4.93
1100 1119 2.670414 CTCAAGATCTCAACCTGTTCGC 59.330 50.000 0.00 0.00 0.00 4.70
1118 1137 3.008923 TCTCTGCAGTCTCTTCTCTCTCA 59.991 47.826 14.67 0.00 0.00 3.27
1134 1161 5.440234 TTTCTCTCGGTATGTATCTCTGC 57.560 43.478 0.00 0.00 0.00 4.26
1136 1163 7.520776 CGACATTTTCTCTCGGTATGTATCTCT 60.521 40.741 0.00 0.00 30.14 3.10
1137 1164 6.579292 CGACATTTTCTCTCGGTATGTATCTC 59.421 42.308 0.00 0.00 30.14 2.75
1160 1187 1.272490 CTTCACCTGACCAGTAAGCGA 59.728 52.381 0.00 0.00 0.00 4.93
1274 1304 4.194720 CTCGGCGAGGTTCCGGAG 62.195 72.222 28.52 0.25 46.43 4.63
1404 1446 1.734465 CTTGGACTCCATTTGCTCGAC 59.266 52.381 0.00 0.00 31.53 4.20
1405 1447 1.339055 CCTTGGACTCCATTTGCTCGA 60.339 52.381 0.00 0.00 31.53 4.04
1425 1475 2.608090 GTCCTTACGAAAGCAGCATACC 59.392 50.000 0.00 0.00 0.00 2.73
1440 1490 4.013728 ACACAAACAAACAGCAGTCCTTA 58.986 39.130 0.00 0.00 0.00 2.69
1446 1496 6.498304 AGAATAGAACACAAACAAACAGCAG 58.502 36.000 0.00 0.00 0.00 4.24
1451 1501 6.791303 TGGTGAGAATAGAACACAAACAAAC 58.209 36.000 0.00 0.00 36.42 2.93
1519 1580 6.596497 ACAGTAATTAACCCGTGTAGATTTGG 59.404 38.462 0.00 0.00 0.00 3.28
1627 1697 7.389803 TTGATTTGGTATGGTACTGTGAATG 57.610 36.000 0.00 0.00 0.00 2.67
1701 1772 7.169645 GGCGTCCGTATTAATAACATCTTACAA 59.830 37.037 0.00 0.00 0.00 2.41
1702 1773 6.642131 GGCGTCCGTATTAATAACATCTTACA 59.358 38.462 0.00 0.00 0.00 2.41
1704 1775 5.858049 CGGCGTCCGTATTAATAACATCTTA 59.142 40.000 9.69 0.00 42.73 2.10
1707 1778 4.557276 CGGCGTCCGTATTAATAACATC 57.443 45.455 9.69 0.00 42.73 3.06
1751 3459 2.865147 TTCGGTCTGGTCCCTCCCT 61.865 63.158 0.00 0.00 34.77 4.20
1754 3462 1.975407 TCGTTCGGTCTGGTCCCTC 60.975 63.158 0.00 0.00 0.00 4.30
1755 3463 2.116772 TCGTTCGGTCTGGTCCCT 59.883 61.111 0.00 0.00 0.00 4.20
1756 3464 2.210341 GAGTCGTTCGGTCTGGTCCC 62.210 65.000 0.00 0.00 0.00 4.46
1757 3465 1.212229 GAGTCGTTCGGTCTGGTCC 59.788 63.158 0.00 0.00 0.00 4.46
1758 3466 1.154263 CGAGTCGTTCGGTCTGGTC 60.154 63.158 3.82 0.00 45.54 4.02
1759 3467 2.952245 CGAGTCGTTCGGTCTGGT 59.048 61.111 3.82 0.00 45.54 4.00
1805 3513 2.908916 TCTTTTCCACCGAACGAGTTT 58.091 42.857 0.00 0.00 0.00 2.66
1808 3516 1.529865 GGTTCTTTTCCACCGAACGAG 59.470 52.381 0.00 0.00 38.27 4.18
1849 3557 3.007635 GACAAGTTTGATCGTTAGGGGG 58.992 50.000 0.00 0.00 0.00 5.40
1876 3584 3.064207 TCTACTGGATCGTGTGTTTTGC 58.936 45.455 0.27 0.00 0.00 3.68
1986 3720 5.794894 AGACCAGTGTTTATTAGTCACAGG 58.205 41.667 0.00 0.00 41.99 4.00
2126 4004 2.745281 TGGCAACTTTTCATACCGTAGC 59.255 45.455 0.00 0.00 37.61 3.58
2197 4280 6.619801 GTGTCTACACAGAACCTTTTTCAT 57.380 37.500 8.35 0.00 45.75 2.57
2349 4475 5.508200 TTGAGAATACGGCAAGTTTGTTT 57.492 34.783 0.00 0.00 0.00 2.83
2386 4525 4.380531 CGTAGAATGTTAGTCATGGCCAT 58.619 43.478 14.09 14.09 36.81 4.40
2397 4536 4.742440 GCCATGTCCATCCGTAGAATGTTA 60.742 45.833 0.00 0.00 0.00 2.41
2406 4545 1.545582 CTTTTTGCCATGTCCATCCGT 59.454 47.619 0.00 0.00 0.00 4.69
2639 4781 6.183360 GGCAAACTTAAGATGTGCAAAAACAA 60.183 34.615 22.15 0.00 36.93 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.