>input_sequence_71437
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-------------------------------------------------------ACCCGGTCGCACCACCACCTCTCCT
CGCCTTGCTCGCCTCACCGCCGGCTATATAACAGTC---CACCTCTGGCCAAGACCCCCACCCCCAAGCACAGGCACAGC
GAACAGGTTGAGATCTT------GAGA--GAGAAGAGACTGCAGAGATACATACCGAGAGAAAATGT---CGCTTACTGG
TCAGGTGAAGTGGTTCAACGAATCCAAGGGGTTCGGCTTCATCACCCCCTCGGACGGCAGCAAGGACGTCTTCGTCCACT
ACTCGGCAATCGCTGGCCCCGGCCTCCGGAACCTCGCCGAGGGCCAGAATGTCGAATTCACCATCGAGAACGGCCCAAAA
GGTCCGACCGCCGCCAATGTCAAGGCCATATAGG---A---GGAGCAATATCGGC-TCCTTTTGTAATT-----TGCTCC
ACCCGGT--------CGAGCAAATGGAGTCCAAGGGTATGCTGCTTTCGTAAGGACTGCTGTTTGTTTGTGTTCTATTCT
CACCAGTGCACCAAAATCTGTACTGTTTCT---TTCTTTTCT--------CTTTTTACACCAAATCTACACGGGTTAATT
ACTGTTGCGTTCGGGTTTGCAAGGATTGTGGA-TTTTGTTTAAGTCAAATATTTAAAC---TTCGAATAAGTTTGTACAA
AGATGTA-----TCAACATTCACAGTACCATACCAAATCAATATCAATA-ATTTGTCATGAAATCTCTTCTTATTATGTA
TTTCCGGG------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G144700
AAAAAGTAGCGAAATAACATGTTTGTGGCTTTTGTGTTAGAGCCACGTTTGTTGAATATTATGTTTCAACAAGCACTTAT
TGGGGATAAGTGGATCGTTTGGGTTCATTTGCTCCAAATGTTGACGGCGGATAACCTCCCGCTTGATGAAGACTCTTTCC
GGTGGAAGCTCACCAATTTGGGTGCTTTTCTATTAAGTTTGCGTACGTTGGTATTATAAAAATTGGATCGACATTAAAAA
ACAAATGTTTCTTAAGTTGATGGCCCCATTAAAGATAAAGAATTGTATGTGGTTCTTATACAAAGGTGTATTTTCTAACC
AAAGTAAAACAAGTTACATGCTTAAAAAGTGTGTAAACATTCTATTTAAAAAGCATGATTTTTGGAAAGTTCATCGTCTA
TTTAATAAATGTGCATGACATATTTAAAAATTAACGTGTATTAAATTTTTCTCATATTTTAAAAAATGTTCAATGTGTGT
TTTAAAAAATCATTGTGTGTTTGAAAATTGTTCATCAGGTATTAAAAATGTTCAACATATTTTGCAAAAAGCATTCACCG
CATATTAGAAAAATGTTCATGTATAAAAATGCCCTAAAAAATATTAAACGAGAATAAAAAAATTCACCGTGTTTAAAAAA
GTTCAATGTGCATTTTCAAAAATCTTTGATAAAGAAATGCAAATTTAAATTATTCGCAAAAAATGTGATTAAAAATAAGG
GAGAAAAACGTAATAACAAAAACCGGAG-TGAAAAACCAAATCGGAAACAGAAAAACAAACAAGAAAACGTTGTACTGGA
GGAAAGCCCCCCGACTGGGCCGGCCCGATTTCCATCACTGTCGGCGTGCCACACAGTTCTCAAAAAAAAAAA--------
---GCGTGCACGTTGGAGCACGTGAACGGCGCGACAGTATCTGGGCAGGTTTGCGTGTGTGATTTGATCCTGATATGCAC
CCACCTCTCCAGCTA---CATGAAATCAATCGTACATGACATCCTGCACTAAAATACCCGGTCGCACCACCACCTCTCCT
CGCCTTGCTCGCCTCACCGCCGGCTATATAACAGTC---CACCTCTGGCCAAGACCCCCACCCCCAAGCACAGGCACAGC
GAACAGGTTGAGATCTT------GAGA--GAGAAGAGACTGCAGAGATACATACCGAGAGAAAATGT---CGCTTACTGG
TCAGGTGAAGTGGTTCAACGAATCCAAGGGGTTCGGCTTCATCACCCCCTCGGACGGCAGCAAGGACGTCTTCGTCCACT
ACTCGGCAATCGCTGGCCCCGGCCTCCGGAACCTCGCCGAGGGCCAGAATGTCGAATTCACCATCGAGAACGGCCCAAAA
GGTCCGACCGCCGCCAATGTCAAGGCCATATAGG---A---GGAGCAATATCGGC-TCCTTTTGTAATT-----TGCTCC
ACCCGGT--------CGAGCAAATGGAGTCCAAGGGTATGCTGCTTTCGTAAGGACTGCTGTTTGTTTGTGTTCTATTCT
CACCAGTGCACCAAAATCTGTACTGTTTCT---TTCTTTTCT--------CTTTTTACACCAAATCTACACGGGTTAATT
ACTGTTGCGTTCGGGTTTGCAAGGATTGTGGA-TTTTGTTTAAGTCAAATATTTAAAC---TTCGAATAAGTTTGTACAA
AGATGTA-----TCAACATTCACAGTACCATACCAAATCAATATCAATA-ATTTGTCATGAAATCTCTTCTTATTATGTA
TTTCCGGGATATTGTAAGATGTTATTAATACGGACGCCGATAACTGGC--------------------------------
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-----GAACGTTCGGTCTAGGGAGGGACCAGACCGAACGACTCGTTCGTGCTGGAGTAGTGAAGGACCGAACAAACTCGT
TCGGTGGAAAAGAACCTCCAGCCCGAACGCCTCACCCCCCCTAACGATCAAACTTGTCGTTACGCAAAACACACGATCCA
GTAGAGAAAGTGGGCCTACAGGCC-TTTTTCCTGTGAAAAG-AAAAACGAAAAATAAAGCCCATATTGAGTTATGAC---
---------TA-GTAAAAAGC----------TCAG-TTTCCTGTGACTAATAAACACTGGTC------------------
---------------------------------------------------------------------TTTTGCACGAC
AAAAATGTCATTGACTATTGGCATTCTATGAAATAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------CAAAAATGGCACAAAAAAA-GGAAGAAGTTCATGGCAATCTGC
ATCGCTACGGTATGAAAAGTTGCCATCACTACGAAA-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAA-CA-A
AAAAG-TTGCCATGAAGTG---------------ATATGATGAAAAAGGTTCTGTGT-----------------------
--------------AGACACATAGAAAAAATTCAG-A--AAAAATATAAAGAAAACA-TCTTAAGTTGTAATGATATCGT
TCATGTAATCCCCATGGCAAAACAAATTTCAAAGGATC--AAAACTTTTTGCCATGGCAAAAACAAATTTGAAAAAA---
----------CAAACTTGCCGTATTCTCAAACTAATTTGTAAAAATGGCCATGACTAACATTCTACGGATGGACATGGCA
AA-AAGACACAACGAACCATGGCAAAAAATGCATTTAGTTGCCATGGAAAAATTC-GCATCTATAAACAAATACTGATTT
TAGTTGCCATGGCAAGTTTGCCATGGGTTTGAACATCTTAGCTTGC-CATGTTTTTTAACATCTTTAGTTGTCATAGCAA
GTTTGTCATGTTCATGTTTGCCATCTATTTGTACAAACTTAATTAAAACAGAAGTTTGCCTTGTTTTTGCACATCTTAAG
TTTGCCATGGCAAGTTTGTAAAATGTATTTGACATCTTA
>chr2B_4
GATTT---------------------------------------------------------------------------
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-----------------------------------------------------------------GATCCTGATATGCAC
CCACTTCTCCAGCTAGTACATGAAACTAATCATACATGATGTCCGCCACCT-------------------CACCTCACCT
CGCCTTGTTCGCCTCACCGCCGGCTATATAATAGTCTGT---CTCTGGCCAAGACCCCCACCCCCAACCACAG------C
GAACAGAGTGAGATTTAGATTTAGACA--GAGAAAAGACTAC--AGATACATACCGAGAGAAAATGC---AGATTACTGG
TGTGGTCAAGTGGTTCAACGAAACCAAGGGGTTCGGCTTCATCACCCCCGACGACGGCAGCAAGGACGTCTTCGTCCACT
TCACCGCAATCCAATCCCATGGCTTCAAGACCCTCGCCGAGGGCCAGCGTGTCGAATTCGAAATTCAAGACGGCCAAAAA
GGCCCGTCCGCCGTCAATGTCAAGCCCCTAGAGGTAGAGGAGGATAAGAGGATTTCGAGCAAATTGTAAGAGGATGCTCC
ACCCATCCACCCGCGTCGATGTGTAATATCC-----TATGCTGCGTTCGGAAAGATTGCTATT-GTTTGTCTTCTCTTCT
CACATGTACACTGAAATCTGCACTGTTTCTCTTTTCTTTTTT--------ATTAGTACATCAAGTCTACAGGGGTTAACT
GCTGCTCCGTTCGGGTTTGCAAGGAATGTGGA-TTTTGTTTGAGTCAATTCTTTTTTACTTTTTTAAAAAGTTTATACTA
CAAAGAA---TATCGATGTTTAAAG-----TACCAAATCAGGATCAACAGAATTATCCTGAAATATGCTTCTATAATGTA
CTCCCTCCGTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGACATATTTTAGTTCTAGATACATCCATTTTTATGC
ATTTTTGCGACAAGTATTTCCGGACGGAGGGAGTATTTGTTGGGTATTTTAAATGTTGGTAACTATTTAAACTTGGTCCA
CTACTGCAGAAATTAGTCTCTTGACACTCCTCATTGCACACGGTCTTGACGAAACGGTATGCAGGACCAAGAGATTTTAT
AAACAACTACGTAAATGTGTAGCGATGAAAATGGTGCTCATTATATGACAAATCAAGTTGTCTGGAAAAAATGATACCAA
ACCTGATTGAAGTTGAACACACACTCTGTTGCCCTAACATGCATGTATGCAATGTAGCAGGGAAGATTTTTCTATATGTG
ATGGCGCTATTATCACAAATAGATCAAAATTTTCAGCATTTAACAAAAAATCTCGGACCATTAGGTCCATTGAGTTGTCC
AATTTTAACCCAACATGTAAACTCCACAAAACCGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCTCCTCCGAAATCCTTTGGCAACTACGAACTAGCTCCAACTATCACCGTTATCATCATTCGTGTTTACTCAG
TAAATGGCTATTCAACCTACTCAAAGGGGAATATGTTTGGCAGGAACTGCTTCGTAATAAGTACCAACATGCCAAGACTT
TATCCCAAGTGACGGCTAAACCAACAATTTGCCCTTTTGCCAGGGTCGGATGAGGGTGAAGGTTGATTTATTTAGCCGAG
GGAATATCATAATATGCAACAGTCAAACTAAACAGTTTTGGGAAGATACTTGGATAGGATAGGGGATGCTCGGGTAGGCC
TTAAATACCATTAAGTAGCGTAATACACGTATGTTGCTTCTGTGTTAGAGGTGCATCTGTTGAATATTCAGTTTCAACAA
GCACTTATTGGGGATAAGTAGATTGATTAAGTTCATTTGCTCCAACCGTTGACGACAGACAACCTCTCGCTAGATGAAGG
ATCTTCCCCGTGGAAGCTCACCAATTCGGGTGCTTTTCCGTTTGCGCTGATAACTTGGCCAAACGTAGGTGGCAAGGTTG
TAACAGAAAAATCGTGGCCAGGAGAAAATGATTCAGCATTTGTTCGGATCTTACCCGATCACGATGCTCAGTGGAAGCAT
GGCGATGCGGTTGCGGTTGATGGTGTTGTGCGCGGTCTGGTGGCGCGACGGGCAGCGGCTTGTACCGGGCGTGCACTCGG
TGCTTCCCGACTAGTTCTACGTACGACGATGCGTCACCATTCAAATAGTGGGCCCATGCGTCGCACGGTAGTTGCGCATC
GTGCATGCATGCGAGCATGGACGCAGAAGTTGGGCCGTACCGTCATACAGTTGAGGCTACGATAGAGGGAGTCATTGGCC
AAATGGACCATTTGGCTTGCGATTTTTCCCGAACTAGGTCTTAGCTCGGGCGAGGAGGCTTCTATCCTTGAACATTGTAC
TTCGTCATCGGCTTTGTAGATGTTTTTTATTTGCTTGGTTCTTTTATAAAAACATAC-----------------------
--------------------------TTTTTTTCCTAAAAGTGTGAACGGAAAGTTAGTTTCGTGCTTTTATAAAGTGTG
TGAACATTTTA-TTAAAAAGCATGATTCTTTTAAATTATTGTGTATTTAATAAATGTTCACGGCATATTAAAAAGTTGAA
CGTGTAGTGAAAAGAGTTAAACCCAAATATCCAGTGAACGTTAGATTTTTAGACATGCAAATTGAACGTTTTTGCATGGC
AAATTATGTTTGCCGAGGGTGGCAAGTTTAGTTTGTGAGCATGACAAATCCGTCTCAGTTCATGTTTATGCCAGAAAATT
GTCATGCTCGTCAACTAAATTTGTCATCCTGCACCAACATAAATTGCGCTAAAAAATGTTTG------------------
-----------------ATTTGCCATGTCTAAAAAT-CTAACATCAGATTTTTAGCATTTGTAAAAAAAATTATCGTATT
TTTAAAGATGTTCAATGTGTCTTTAAAACAATTTCATTATTTATTTGAAAAAAATTCGTCATGTATTAAAAAATTTCAAC
ATGTTTTGCAAAAAGTGTTCACCGTATGAAAAATGTTCATGTATAAAAACGCTCTAAAAATATTAAATGAAAATAAAA-A
AAATG-TCACCATGTTTCAAAAAATGTTCAATGTATATTTTGAAAAATCT-TTCTAATTGTAAAGCAAAATGAATATGGA
AAATAATAATAAAGAGAAAATTAGAAAAACGTAAGAA--AAGAAATCTAATAAACCGGAAT-------------------
--------------------------------------------------------GAAAAAACAGATCGGAAACAG---
----------AAAAAACAACAAGAAAATGCTACACTACAGAAGCTCAGGGAAGTCGCACTGCAGGAAAGCACCCGACAAG
GCCGGC-------------------------------------------------------------------CCGATTT
CCATCGTCAGGTAAGGATTTGCCTGGACGCAGAGCTGCACATGCGTGCACGTTTGAGCACGTTATTAGGCGACGTGATCG
GCGCGACCGTATCTGGGTAGGTTGCGTGTGTGATTTGATCCTGATATGCACCCACCCCTCCAGCTAAATGAAATCAATCA
TACAT----------------------------------
>chr2B_717
AACGGAG-------------------------------------------------------------------------
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----AAAACGTAAAAACAAAAAACCGGACTGAAAAACCAAATCGGAAACAGAAAAACCAACAAGAAAACGCGC-ACTGCA
GGAAAG-CCCCCGACTGGGCCGGCCCGATTTCCATCACTGTCGGCGTCAGAGGTAGGATTTGCCTGGACGGAGAGCTACA
CATGCGTTCACGTTCGAGCACGTGAACGGCGCGACAGTATCAGGTTAGGTTTGCGTGTGTGATTTGATCCTGATATGCAA
CCACCCGTCCAGCTC---ATGAAACCAAATCATACATGATCTCCTACAGTAAAACACGCGGCCGCACCGCCACAACGCCT
GGCCTTGCTCGCCTCACCGCCGGCTATATAATAGTCGTCCAGCTCCGGCCAAGACCCCTACCCCCAAGCAGAG------C
GAACAGGTTGAGATCTG------GAGA--GAGAAGAGACTAC--AGATACATACTGAGAGAAAATGCCTGCGCTTACTGG
TCAGGTGAAGTGGTTCAACGAATCCAAGGGGTTCGGCTTCATCACCCCCTCGGACGGCAGCAATGATGTCTTCGTCCACT
TCTCGGCAATCACTGGCCCCGGCTTCAAGACCCTCGCCGAGGGCCAGAATGTCGAATTCACCATCGAAAACGGCACAAAA
GGCCCGACCGCCGCCAATGTCAAGGCCATATAGG---AGGAGAAGCAATATCGGCATCCTTTTGTAATT-----TGCTCC
ACCCATCCACCCGGCCGAGCAAATGGAGTCCAAGAGTATGCTGCTTTCGGAAGGATTGCTATTTGTTTGTGTTCTATTCT
CACCAGTGCACTGAAATCTGTACTGTTTCT---TTCTTTTTTTCTTTACAAA---------AAATCTACACGGGTTAACT
ACTGCTGCGTTCGGGTTTGCATGGAATATGGA-TTTTGTTTAAATCAAATCTTTGAAC---TTCTAATAA----------
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>chr2D_872
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---GCGTGCACGCTGGAGCACGTGAACGGCGCGACAGTATCTGGGTAGGTCTGCGTGTGTGATTTGATCCTGATATGCAA
CCACCTGCCCAGCTC---ATGAAACCAAATCATACACGATGTCCTACAGTAAAACACGAGGCCGCACCACCACCTCACTT
CGCCTTGCTCGCCTCGCCGCCGGCTATATAATAGTC---CAGCTC-GGCCAAGACCCCTA-CCCCAAGCACAG------C
GAACAGGTTGAGATCTA------GAAAGGGAGAGGAGACTAC--AGATACATACTGAGAGAAAATGCCAGCGCTTACTGG
TCAGGTGAAGTGGTTCAACGAGAGCAAGGGGTTCGGCTTTATCACCCCCGACGACGGCAGCAAGGACGTCTTCGTGCACT
TCTCGGCAATCGTTGACGCCGGCTTCAAGACCCTCGCCGAGGGCCAGCGTGTCGAATTCAGAATCGAAAGCGGCGCAAAA
GGCCCGTCCGCCGCCAATGTCAAGGCCATATAGG---AGGAGGAGCAATATCGGCATCCTTTTGTAATT-----TGCTCC
ACCCGA--------CCGAGCAAATGGAGTCCAAGAGTATGCTGCTTTAGGAAGGATTGTTATTTGTTTGTGTTCTATTCT
CACCAGTGCACTAAAATCTGTACTGTTTCT---TTCTTTTCTTTTCTTTTCTTTTCACATCAAATCTACACGGGTTAATT
ACTGTTGCGTTCGGGTTTGCAAGGAATGTGGA-TTTTGTTTAAGTCAAATCTTTAAAC---TTCGAATAAGTTTGTACAA
AGATGTACTGTATCAATATTCACAG-----TACCAAATCAATATCAATA-AATTATCATGAAATCTCTTCTTATTATGTA
TTTCCGGGATA---------------------------------------------------------------------
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>chr2A_933
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----------------------------------------------------------------TGATCCTGATATGCAC
CCACTTCTCCAGCTA---CACGAAATCAATCATACATGATGTCCTACAGTCAAGTAAGGG---GCACCGC-----CACCT
CGCCTTGCTCGCCTCATCGCCGGCTATATAATAGTCGG---CCTCTGGCCAAGACCCCCACCCCCAACCACAG------C
GAACAGAGTGAGATTTA------GACAGAGA--AAAGGCTAC--GGATACATACGGAGAGAAAATGC---AGATTACTGG
TAAGGTGAAGTGGTTCAACGAATCCAAGGGGTTCGGCTTCATCACCCCCGACGACGGCAGCAAGGACGTCTTCGTCCACT
TCAGCGCAATCCATGGCAAGGGCTTCAAGACCCTCGCCGAGGGCCAGCGTGTCGAATTCGAAATTCAAGACGGCCAAAAA
GGCCCGTCCGCCGTCAATGTCAAGGCCCTAGAGCTAGAGGAGGATAAAAGGATTTCGAGCAAATTGTAAGAGGATGCTCC
ACCCATCCACATCGTGCGATGCGTGATATCC-----TATGCTGCGTTCGGAAGGATTTGCTATTGTTTGTATTCTCTTCT
CACCTGTGCACTAAAATCTGTACCGTTTCTCCTTTTCTTTTT-------------TACATCAAG-CTACATGGGTTAACT
ACTGCTCTGTTCGGGCTTGCAAGGAATATGGTTTTTTGTTTGAGTCAAATGTTT--------------------------
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>chr7D_1718
ATAGG---------------------------------------------------------------------------
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---------------------------------ACACCGATAAGTGCC--------------------------------
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-----GACCGTTTGGCCTGGGAGACTCCCAGACCGAACGACTCGTTCGTGCTGGAGTGGAGAAGGATCCAACGAATTCGT
TC-GTGGAAAAGAACCTCCAGCCCGAACGCCTCACCTCCCGTGACGATCGAACTTGTCGTTACACAAAGCACACGATCCA
GTAGAGAAAGTGGGCCTACAGGCC-TTTTTCCTGTGAAAAG-AAAAACGAAAAATAAAGCCCATATTAAGTTATGAC---
---------TA-TAAAAAA-C----------TTAGTTTTTCTGTGACTAATAAACACTGGTC------------------
---------------------------------------------------------------------TTTTGCACGAT
AAAAATGTCATTGACTATTGCCATTCTATGAAATAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------CAAAAATGGCACAAAAAAA-GGAAGAAGTTCATGGCAATCTGC
ATCTCTACAGTACGAAAAGTTGCCATCACTACGAAA-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAAAAAC-
------TTTCCATGAAGTG---------------ATATGGTGAAAAAGGTTCTCTCT-----------------------
--------------AGACACA--GATTTTTTTTAG-AACAATAA-ATAAAGAAAACA-TCTTAAGTTGTAATGATATCGT
TCATGTAATCCCCATGGCAAAACAAATTTCAAAGGATC--AAACCTTTTTGCCATGTTCT---CAAACTT----GAA---
----------AGAACTTGCCGTGTTCTCAAACTAATTGGTAAAA-TGGCCATGACAAACATTCTTCGGACGGACATGGCA
AA-AAGACACAACGAACCATGGCAAAAAATGCATTTAGTTGCCATGGAAAAATTC-ACATCTATAAACAAATATTGATTT
TAGTTGCCATGGCAAGTTTGCCATGGGTTTGAACATATTAGCTTGC-CATGTTTTTTAACATCTTTAGTTGCCATAGCAA
GTTTGTCATGTTCATGTTTGCCATGTATTTATACAAACTTAATTAAAAAAGAAGTTTGACATGTTTTTGCACATCTTAAG
TTTGCCATGGCAAGTTTGC-AAATGTTTTTGACATCTTA
>chr7D_1719
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----------------------------TATGGACACCGATAAGTGCC--------------------------------
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-----GACCGTTCGGCCTGGGAGACTCCCAGGCCGAACGACTCGTTCGTGCTGGAGTGGAGAAGGATCGAACGAATTCGT
TCGGTGGAAAAGAACCTCCAGCCCGAACGCCTCACCTCCCGTAACGATCAAACTTGTCGTTACACAAAGCACACGATCCA
GTAGATAAAGTGGGCCTACAGGCC-TTTTTCCTGTGAAAAG-AAAAACGAAAAATAAAGCCCATATTAAGTTATGAC---
---------TACTAAAAAA-C----------TCAGTTTTTCTGTGACTAATAAACACTGGTC------------------
---------------------------------------------------------------------TTTTGCACGAT
AAAAATGTCATTGACTATTGCCATTCTATGAAATAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------TAAAAATGGCAC-AAAAAA-GGAAGAAGTTCATGGCAATCTGC
ATCTCTACACTATGAAAAGTTGCCATCACTACGAAA-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAAA--C-
------TTTCCATGAAGTG---------------ATATGGTGAAAAAGGTTCTCTCT-----------------------
--------------AGACACA--GAATTTAATTAG-A--AAAAA-GTAAAGAAAACA-TCTTAAGTTGTAATGATATCGT
TCATGTAATCCCCATGGCAAAACAAATTTCAAAGGATC--AAACCTTTTTGCCATGTTCT---CAAACTTGAAAGAACTT
GCCGTGTTCTCAAACTTGCCGTGTTCTCAAACTAATTTGTAAAA-TGGCCATGACAAACATTCTTCGGACGGACATGGCA
AA-AAGACACAACGAACCATGGCAAAAAATGCATTTAGTTGCCATGGAAAATTTC-ACATCTATAAACAAATACTGATTT
TATTTGCCATGGCAAGTTTGCCATGGGTTTGAACATCTTAGCTTGC-CATGTTTTTTAACATCTTTAGTTGTCATGGCAA
GTTTGTCATGTTCATGTTTGCCATATATTTGTACAAACTTAATTAAAAAAGAAGTTTGACATGTTTTTGCACATCTTAAG
TTTGCCATGGCAAGTTTGC-AAATGTTTTTGACATCTTA
>chr5D_1722
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-------------------------------GGACGTCGATAACGGCC--------------------------------
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-----GAACGTTCGGTCTGGTC----CCCAGACCGAACGACTCGTTCGTGCTGGAGTA--------------------GT
TCGGTGGAAAAGAACCTCCAGCCCGAACGCCTCACCTCCCCTAACGATCAAACTTGTCGTTACACAAAACACACAATCCA
GTAGAGAAAGTGGGCCTACAGGCC-TTTTTCCTGTGAAAAG-AAAAACGAAAAATAAAGCCCATATTGAGTTATGAC---
---------TA-GTAAAAAGC----------TCAGTTTT-CTGTGACT-ATAAACACTGGTC------------------
---------------------------------------------------------------------TTTTGCACGAC
AAAAATGTCATTGACTATTGCCATTCTATGAAATAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------CAAAAATGGCACAAAAAAAAGGAAGAAGTTCATGGCAATCTGC
ATCTCTACGATATGAAAAGTTGCCATCACTACGAAA-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAA-C-GA
AAAAG-TTGCCATGAAGTG---------------ATATGGTGAAAAAGGTTCTGTGT-----------------------
--------------AGACACATAGAAAAATTTCAGAA--AAAAATATAAAGAAAACA-TCTTAAGTTGTAATGATATCGT
TCATGTAATCCCCATGGCAAAACAAATTTCAAAGGATC--AAAACTTTTTGCCATGGCAAAAACAAATTTGAAAGAA---
----------CAAACTTGCCGTATTCTCAAACTAATTTGTAAAA-TGGCCATGACAAACATTCTTGGGACGGACATGGCA
AA-AAGACACAACGAGCCATGGCAAAAAATGCATTTAGTTGCCATGGAAAAATTC-GCATCTATAAACAAATACTGATTT
TAGTTGCCATGGCAAGTTTTCCATGGGTTTGAACATCTTAGCTTGC-CATGTTTTTTAACATCTTTAGTTGCCATAGCAA
GTTTGTCATGTTCATGTTTGCCATCTATTTGTACAAACTTAATTAAAACAGAAGTTTGCCATGTTTTTGCACATCTTAAG
TTTGCCATGGCAAGTTTGTAAAATGTATTTGACATCTTA
>chr7D_1722
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-------------------------------GGACACCGATAAATGCC--------------------------------
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-----GACCGTTCGGCCTGGGAGACTCCGAGACCGAACGACTCGTTCGTGCTGGAGTGGAGAAGGATCGAACGAATTCGT
TCGC-GGAAAAGAACCTCCAGCCCGAACGCCTCACCTCCCGTAACCATCGAACTTGTGGTTACACAAAGCACACGATCCA
GTAGAGAAAGTGGGCCTACAGGCC-TTTTTCCTGTGAAAGG-AAAAACAAAAAATAAAGCCCATATTAAGTTATGAC---
---------TA-CTAAAAAAC----------TTAGTTTTTCTGTGACTAATAAACGCTGGTC------------------
---------------------------------------------------------------------TTTTGCACGAT
AAAAATGTCATTGACTATTGCCAA-CTATGAAATAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------CAAAAATGGCAC-AAAAAAAGGAAGAAGTTCATGGCAATCTGC
ATCTCTACAGTACGAAAAGTTGCCATCACTACGAAA-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAAAAAC-
------TTTCCATGAAGTG---------------ATATGGTGAAAAAGGTTCTCTCT-----------------------
--------------AGACACA--GAATTTTTTTAG-AAAATAAA-ATAAA-AAAACA-TCTTAAGTTGTAATGATATCGT
TCATGTAATCCTCATGGCAAAACAAATTTCAAAGGATC--AAACCTTTTTGCCATGTTCT---CAAACTT----GAA---
----------AGAACTTGCCGTGTTCTCAAACTAATTGGTAAAA-TGGCCATGACAAACATTCTTCGGACGGACATGGCA
AA-AAGACACAACAAACCATGGCAAAAAATGCATTTAGTTGCCATCGAAAAATTC-ACATCTATAAACAAATACCGATTT
TAGTTGCCATGGCAAGTTTGCCATGGGTTTGAACATATTAGCTTGC-CATGTTTTTTAACATCTTTAGTTGCCATAGCAA
GTTTGTCATGTTCATGTTTGCCATGTATTTGTACAAACTTAATTAAAAAAGAAGTTTGACATGTTTTTGCACATCTTAAG
TTTGCCATGGCAAGTTTGC-AAATGTTTTTGACATCTTA
>chr6D_1905
GGGCCC--------------------------------------------------------------------------
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----------------TACAGGCC-TTTTTCTTGTGAAAAG-AAAAACGACAAATAAAGCCCATG------TATGAC---
---------TA-GTAAAAATC----------CCAGTTTTTCTACGACTAATAAACACTAGTC------------------
---------------------------------------------------------------------TTTTGCACGAT
AAAATTGCCATGGACTTTTGCCATTCTATGAAAGAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------AAAAAATGGCACAAAATA--GGAAGAAG-TCATGGCAACCTGC
ATCTCTACAGTACGAAAAGTTGCCATCACTACGAAG-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAATGGGA
AAAAG-TTGCCATGAAGTG---------------ATAGGGTGAAAACATTTCTCTCT-----------------------
--------------AGACACATAGAAAATTTTCA--A--AAAAA-ATGAAGAAAACC-TTTTAAGTTGTGATGATATCGT
ACATGTAATCCCCATGGCAAAATAAATTTCAAAGAATC--AAAACTTTTTGCCATGGAAAAGACAATTTTGAAAGAA---
----------CAAACTTGTCGTGTTCTCAAACTAATTTGTAA---TGGCCATGACAAAC----TTCGGATGGACATGGCA
AA-AAGACACAATGAACCATGGCAAAAAATGCATTTAGTTGCCATGGAAAAA-AC-ACATTTATAAAC-AATACTGATTT
TAGTTGCCATGGCAAATTTGCCATGTTTTTGAACATCTTAGGTTGC-CATGTTTTTTAACATCATTAGTTGCCATAGCAA
GTTTGCCATGTT--------------------------------------------------------------------
---------------------------------------
>chr1D_1905
GGGCCC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------TACAGGTCTTTTTTCCTGTGAAAAG-AAAAACGAAAAATAAAACCCATG------TATGAC---
---------TA-GTAAAAAGC----------TCAGTTTTTCTGCGACTAATAAACACTAGTC------------------
---------------------------------------------------------------------TGTTGCACGAT
AAAACTGCCATGGACTTTTGCCATTCTATGAAAGAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------CAAAAATGGCGCAAAAAT--GCAAGAAG-TCATGGAAACCTGC
ATCTCTACAGTACGAAAAGTTGCCATCACCACGAAG-ATTATA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAA-GGGA
AAGAG-TTGCCATGAAGTG---------------ATAGGGTGAAATTTTTTCTCTCT-----------------------
--------------AGACACATAGAAAATTTTCA--A--AAAAA-ATGGAGAAAACA-TTTTAAGTTGTGATGATATCGT
ACATGTAATCCCCATGGCAAAACAAATTTCAAAGAATC--AAAACTTTTTGCCATGGAAAAAACAATTTTGAAAGAA---
----------CAAACTTGCCGTGTTCTCAAACTAATTTGTAA---TGGCCATGACAAAC----TTCGGATGGACATGGCA
AA-AAGACACAATGAACCATGGCAAAAAATGCATTTGGTTGCCAT-GAAAAAAAA-ACATTTATAAAC-AATACTGATTT
TAGTTGCCATGGCAAGTTTGCCATGTTTTTGAACATCTTAGGTTGC-CATGTTTTTGAACATCATTAGTT-CCATAGCAA
GTTTGCCATGTT--------------------------------------------------------------------
---------------------------------------
>chr1D_1908
--------------------------------------------------------------------------------
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--------------CCTACAGGCCTTTTTCCTTGTGAAAAG-AAAAACGAAAAATAAAGCCCGTG------TATGAC---
---------TA-GTAAAAAGC----------CCAGTTTTTCTGCGACTAATAAACACCGGTC------------------
---------------------------------------------------------------------TTTTGTACGAC
AAAATTGCCATGGACTTTTGCCATTCTATGAAAGAAATTGCCAT-------------GTTCACCTTTATGTTTT------
-------------------------------------CAAAAATGGCGCAAAAAA--GGAAGAAG-TCATGGCAACCTGC
ATTTCTACAGTACGAAAAGTTGCCATCACTACGAAAGTTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAA-G-GA
ATTTTTTTTCCATGAAGTG---------------ATATGGTGAAAAAATT-CTCTCT-----------------------
--------------AGACACATAGAATTTTTTCA--A--AAAAA-ATGGAGAAAACATTTTTAAGTTGTAATGATATCGT
ACATGTAATCCCCATGGCAAAACAAATTTCAAAGAATC--AAAACTTTTTGCCATGGAAAAAACAATTTTGAAAGAA---
----------CAAACTTGCCGTGTTCTCAAACTAATTTGTAA---TGGTCATGACAAACATTCTTCGGGTGGACGTGGCA
AA-AAGACACAATGAACCATGGCAAAAAATGCATTTAGTTGCCATCGAAAAAAAC-ACATTTATAAAC-AATACTGATTT
TAGTTGCCATGGCAAGTTTGCCATATTTTTGAACATCTTAGGTTGC-CATGTTTTTGAACATCATTAGTTGCCATAGCAA
GTTTGCCATGTT--------------------------------------------------------------------
---------------------------------------
>chr4D_1908
--------------------------------------------------------------------------------
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--------------CCTACAGGTC-TTTTTCTTGTGAAAAGAAAAAACGAAAAATAAAGCCCATG------TATGAC---
---------TA-GTAAAAAGC----------TCAGTTTTTCTGCGACTAATAAACACTAGTC------------------
---------------------------------------------------------------------TGTTGCACGAT
AAAACTGCCATGGACTTTTGCCATTCTATGAAAGAAATTGCCAT-------------GTTCAAGTTTATGTTTT------
-------------------------------------CAAAAATGGCGCAAAAAT--GGAAGAAG-CCATGGAAACCTGC
ATCTCTACAGTACGAAAAGTTGCCATCACCACGAAG-TTTATA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAA-GGGA
AAGAG-TTG-CATGAAGTG---------------ATAGGGTGAAATTTTTTCTCTCT-----------------------
--------------AGACACATAGAAAATTTTCA--A--AAAAA-ATGGAGAAAACA-TTTTAAGTTGTGATGATATCGT
ACATGTAATCCCCATGGCAAAACAAATTTCAAAGAATC--AAAACTTTTTGCCATGGAAAAAACAATTTTGAAAGAA---
----------CAAACTTGACGTGTTCTCAAACTAATTTGTAA---TGGCCATGACAAAC----TTCGGATGGACATGGCA
AA-AAGACACAATGAACCATGGCAAAAAATGCATTTAGTTGCCAT-G-AAAAAAA-ACATTTATAAAC-AATACTGATTT
TAGTTGCCATGGCAAGTTTGCCATGTTTTTGAACATCTTAGGTTGC-CATGTTTTTGAACATCATTAGTTGCCATAGCAA
GTTTGCCATGTT--------------------------------------------------------------------
---------------------------------------
>chr5D_1914
--------------------------------------------------------------------------------
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--------------------GGCC-TTTTTCCTGTGAAAAG-AAAAACGAAAAATAAAGTCCATATTAAGTTGTGAC---
---------TA-GTAAAAAGC----------CCAGTTTTTCAATGACTAAAAAAACACTGGCC-----------------
----------------------------------------------------------------------TTTGCACAAC
AAAATTGCCATGGACTTTTGCCATTCTATGAAA-AAATTGTCAT-------------GCTCAAAATTATGTTTT------
-------------------------------------AAAAAACTGTGCAAAAAA--GGACGAAG-TCATGGCAATCTGT
ATCTCTACAGTACGAAAAGTTGCCATCACTACGAAG-TTTACA-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAAAAAAAC-A
AAAAG-TTGCCATGAAGTG---------------ATATGGTGAGAAAAGTTCCCTCT-----------------------
--------------AGACACATAGAAAATATTCAG-A--AAAAA-ATGGAGAAAACA-TCTTAAGTTGTGATGATAACGT
ACATGTAATCCCCATGGCAAAACAAATTTCAAAGTGATAAAAACTCTTTTGGCATGGCAAAAACAAATTTGAAAGAA---
----------CAAAACTGTTATGTTCTAAAACTAATTTGTAA---TGGCGATGACAAACATTCTTTAGATGGACATGGCA
AAGAAGACACAGCGAACCTCGGCAAAAAATGCATTTAGTTGCCAT-G-GAAAAAACACATTTATAAAC-AATATTGATTT
TAGTTTCCATGGCAAGTTCGGCATGTTTTTTAATATCTTAGGTAGC-CATGTTTTTGAACATCTTTAGTTGACATAGCAA
GTTTGCCATGTT--------------------------------------------------------------------
---------------------------------------
>SNPs
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------S--------S-S-SS-----------------------------S------------SSSS----S-
------S----------------------------------------SSS-SSS--SSS-SSSSSSS-SSS---------
---------------------------------------------S----------------------------------
-------------------------------S-------SS----S-----------S---S--------------S---
-------------------------------S-----------------------------------------SSSSSS-
----------------S-----------------------S-SS----------------------S-------------
--------------------------------------------------------------------------------
S----------------------S--SS--S------------------------------------S------------
--S-----------------------------------------------------------------------------
-----SS---------------------------S--------------S-----S----S-------------------
-----------S-----------------------------------------------S--------------------
-------------------------S------------------------S-----------------------------
----------------S--------SSSSS---------------------S--S-------------------------
-----------SS-S--S-SS-SSSSS---S---------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--SSSSSS---------------------------------------------S--S----
------------------------------------S--------------------------S----------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------S----------S--------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
---------------------------------------
>forward_173
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCTTTCC
GGTGGAAGCTCAC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_1114
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GCACAGC
GAACAGGTTGAGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_848
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TTTCCATCACTGTCGGCGTG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_3466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GACCAGACCGAACGACTCG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
