Multiple sequence alignment - TraesCS2A01G141000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G141000 chr2A 100.000 3143 0 0 1 3143 86289137 86285995 0.000000e+00 5805
1 TraesCS2A01G141000 chr2D 93.813 1697 76 11 737 2427 85777661 85775988 0.000000e+00 2525
2 TraesCS2A01G141000 chr2D 86.239 545 70 4 194 735 552066086 552066628 1.260000e-163 586
3 TraesCS2A01G141000 chr2D 91.940 397 11 4 2443 2821 85776007 85775614 1.280000e-148 536
4 TraesCS2A01G141000 chr6D 91.168 736 63 2 1 735 378432600 378431866 0.000000e+00 998
5 TraesCS2A01G141000 chr6D 88.595 719 58 6 18 734 327609099 327608403 0.000000e+00 852
6 TraesCS2A01G141000 chr2B 92.429 700 35 13 737 1423 138802514 138801820 0.000000e+00 983
7 TraesCS2A01G141000 chr2B 91.701 482 33 5 1449 1923 138796798 138796317 0.000000e+00 662
8 TraesCS2A01G141000 chr2B 93.675 332 17 1 1921 2252 138787684 138787357 7.830000e-136 494
9 TraesCS2A01G141000 chr2B 94.427 323 15 1 2821 3143 587835727 587836046 7.830000e-136 494
10 TraesCS2A01G141000 chr2B 89.908 109 11 0 1345 1453 138801820 138801712 1.180000e-29 141
11 TraesCS2A01G141000 chr5A 88.467 737 82 3 3 737 632192921 632193656 0.000000e+00 887
12 TraesCS2A01G141000 chr5A 95.046 323 13 1 2821 3143 76749042 76748723 3.620000e-139 505
13 TraesCS2A01G141000 chr5A 94.190 327 14 5 2818 3143 446609559 446609881 7.830000e-136 494
14 TraesCS2A01G141000 chr5A 75.065 1155 233 39 1007 2142 573749553 573750671 1.310000e-133 486
15 TraesCS2A01G141000 chr7A 88.347 738 83 3 3 738 20429577 20430313 0.000000e+00 883
16 TraesCS2A01G141000 chr3A 88.243 740 83 4 3 739 79379180 79379918 0.000000e+00 881
17 TraesCS2A01G141000 chr7B 85.034 735 107 3 1 734 696890384 696889652 0.000000e+00 745
18 TraesCS2A01G141000 chr7B 94.495 327 14 2 2818 3143 93261587 93261910 4.680000e-138 501
19 TraesCS2A01G141000 chr7B 94.427 323 15 3 2821 3143 47604971 47605290 7.830000e-136 494
20 TraesCS2A01G141000 chr7B 94.427 323 15 1 2821 3143 253903495 253903814 7.830000e-136 494
21 TraesCS2A01G141000 chr1D 90.377 530 50 1 207 735 307154753 307154224 0.000000e+00 695
22 TraesCS2A01G141000 chr3B 86.634 621 80 3 1 619 812784384 812783765 0.000000e+00 684
23 TraesCS2A01G141000 chr1A 94.737 323 14 1 2821 3143 479210209 479209890 1.680000e-137 499
24 TraesCS2A01G141000 chr5B 94.427 323 15 3 2821 3143 579529875 579530194 7.830000e-136 494
25 TraesCS2A01G141000 chr4B 94.427 323 15 1 2821 3143 493537169 493536850 7.830000e-136 494
26 TraesCS2A01G141000 chr5D 74.636 1167 225 50 1007 2141 454799173 454800300 1.720000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G141000 chr2A 86285995 86289137 3142 True 5805.0 5805 100.0000 1 3143 1 chr2A.!!$R1 3142
1 TraesCS2A01G141000 chr2D 85775614 85777661 2047 True 1530.5 2525 92.8765 737 2821 2 chr2D.!!$R1 2084
2 TraesCS2A01G141000 chr2D 552066086 552066628 542 False 586.0 586 86.2390 194 735 1 chr2D.!!$F1 541
3 TraesCS2A01G141000 chr6D 378431866 378432600 734 True 998.0 998 91.1680 1 735 1 chr6D.!!$R2 734
4 TraesCS2A01G141000 chr6D 327608403 327609099 696 True 852.0 852 88.5950 18 734 1 chr6D.!!$R1 716
5 TraesCS2A01G141000 chr2B 138801712 138802514 802 True 562.0 983 91.1685 737 1453 2 chr2B.!!$R3 716
6 TraesCS2A01G141000 chr5A 632192921 632193656 735 False 887.0 887 88.4670 3 737 1 chr5A.!!$F3 734
7 TraesCS2A01G141000 chr5A 573749553 573750671 1118 False 486.0 486 75.0650 1007 2142 1 chr5A.!!$F2 1135
8 TraesCS2A01G141000 chr7A 20429577 20430313 736 False 883.0 883 88.3470 3 738 1 chr7A.!!$F1 735
9 TraesCS2A01G141000 chr3A 79379180 79379918 738 False 881.0 881 88.2430 3 739 1 chr3A.!!$F1 736
10 TraesCS2A01G141000 chr7B 696889652 696890384 732 True 745.0 745 85.0340 1 734 1 chr7B.!!$R1 733
11 TraesCS2A01G141000 chr1D 307154224 307154753 529 True 695.0 695 90.3770 207 735 1 chr1D.!!$R1 528
12 TraesCS2A01G141000 chr3B 812783765 812784384 619 True 684.0 684 86.6340 1 619 1 chr3B.!!$R1 618
13 TraesCS2A01G141000 chr5D 454799173 454800300 1127 False 449.0 449 74.6360 1007 2141 1 chr5D.!!$F1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 840 0.391661 TCAGCGAATCCAGCTTCCAC 60.392 55.0 0.0 0.0 44.06 4.02 F
1523 1630 0.108585 GTTCACTGCAACCCCTCTGA 59.891 55.0 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 1783 0.037975 GGTGCCAAAGCCATTGTCAG 60.038 55.0 0.00 0.0 37.32 3.51 R
2935 3070 0.038709 GAGAGGCGCTGCATAGTAGG 60.039 60.0 7.64 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.268544 TCATTACTACACTCGTTATCGCAC 58.731 41.667 0.00 0.00 36.96 5.34
67 68 1.671845 GTAACACTTTGGGCAACGTGA 59.328 47.619 0.76 0.00 41.38 4.35
104 106 2.421424 GCAATTCACGAAGGCATCTTCT 59.579 45.455 0.00 0.00 45.36 2.85
180 183 5.700402 ATAGTTAAGGAGAACCAGCATGT 57.300 39.130 0.00 0.00 38.94 3.21
463 466 0.817654 AGAATCTGATCGTGGCGTCA 59.182 50.000 0.00 0.00 0.00 4.35
486 489 1.208642 GCAAAACGAGTGGTGCAAGC 61.209 55.000 0.00 0.00 36.97 4.01
588 591 2.128507 TTTTTGAAGGGCGCCGGTT 61.129 52.632 22.54 16.91 0.00 4.44
669 673 3.054213 TGTGGCTTACTAACCCCCATAAC 60.054 47.826 0.00 0.00 0.00 1.89
673 677 3.203710 GCTTACTAACCCCCATAACCCTT 59.796 47.826 0.00 0.00 0.00 3.95
683 687 4.326610 CCCCCATAACCCTTTTTGTATCCT 60.327 45.833 0.00 0.00 0.00 3.24
784 792 3.157949 CCTCCCTCTCGCCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
830 838 1.012841 CTTCAGCGAATCCAGCTTCC 58.987 55.000 0.00 0.00 44.06 3.46
832 840 0.391661 TCAGCGAATCCAGCTTCCAC 60.392 55.000 0.00 0.00 44.06 4.02
1020 1037 3.202001 CGGCGGCGGTTCATCAAT 61.202 61.111 25.36 0.00 0.00 2.57
1347 1376 4.070552 GACGCCGACCCTTGCTCT 62.071 66.667 0.00 0.00 0.00 4.09
1374 1481 3.186047 CTGCCCCGCGTTAACTCG 61.186 66.667 10.95 10.95 0.00 4.18
1403 1510 1.776662 CGAACTCCCATCTCCCTGTA 58.223 55.000 0.00 0.00 0.00 2.74
1482 1589 4.260985 TCTACGGCATCAACATGTTCAAT 58.739 39.130 8.48 2.54 31.86 2.57
1500 1607 4.604114 TCGAGCGACTTCGAGGTA 57.396 55.556 0.00 0.00 44.00 3.08
1520 1627 0.951040 CTCGTTCACTGCAACCCCTC 60.951 60.000 0.00 0.00 0.00 4.30
1521 1628 1.071471 CGTTCACTGCAACCCCTCT 59.929 57.895 0.00 0.00 0.00 3.69
1523 1630 0.108585 GTTCACTGCAACCCCTCTGA 59.891 55.000 0.00 0.00 0.00 3.27
1524 1631 0.108585 TTCACTGCAACCCCTCTGAC 59.891 55.000 0.00 0.00 0.00 3.51
1525 1632 0.764369 TCACTGCAACCCCTCTGACT 60.764 55.000 0.00 0.00 0.00 3.41
1526 1633 0.321122 CACTGCAACCCCTCTGACTC 60.321 60.000 0.00 0.00 0.00 3.36
1527 1634 0.472734 ACTGCAACCCCTCTGACTCT 60.473 55.000 0.00 0.00 0.00 3.24
1528 1635 1.203187 ACTGCAACCCCTCTGACTCTA 60.203 52.381 0.00 0.00 0.00 2.43
1529 1636 1.902508 CTGCAACCCCTCTGACTCTAA 59.097 52.381 0.00 0.00 0.00 2.10
1531 1638 1.903183 GCAACCCCTCTGACTCTAAGT 59.097 52.381 0.00 0.00 0.00 2.24
1533 1640 3.244596 GCAACCCCTCTGACTCTAAGTTT 60.245 47.826 0.00 0.00 0.00 2.66
1582 1689 4.821589 GGCTCAAGCTCCCGTCGG 62.822 72.222 3.60 3.60 41.70 4.79
1602 1709 1.348036 GCGCCCTACCTTGATAATCCT 59.652 52.381 0.00 0.00 0.00 3.24
1607 1714 3.973973 CCCTACCTTGATAATCCTGGTCA 59.026 47.826 0.00 0.00 32.74 4.02
1670 1780 1.949799 ACCATCTGCTTCTCCTCACT 58.050 50.000 0.00 0.00 0.00 3.41
1671 1781 2.264455 ACCATCTGCTTCTCCTCACTT 58.736 47.619 0.00 0.00 0.00 3.16
1673 1783 2.419851 CCATCTGCTTCTCCTCACTTCC 60.420 54.545 0.00 0.00 0.00 3.46
1674 1784 2.317371 TCTGCTTCTCCTCACTTCCT 57.683 50.000 0.00 0.00 0.00 3.36
1686 1799 3.152341 CTCACTTCCTGACAATGGCTTT 58.848 45.455 0.00 0.00 0.00 3.51
1707 1820 0.319555 GCACCTACTGCTTCGACACA 60.320 55.000 0.00 0.00 43.33 3.72
1711 1824 1.550065 CTACTGCTTCGACACATCCG 58.450 55.000 0.00 0.00 0.00 4.18
1716 1829 1.153369 CTTCGACACATCCGGCCAT 60.153 57.895 2.24 0.00 0.00 4.40
1783 1896 4.803426 GGCACGTCCCTGAGCTCG 62.803 72.222 9.64 3.88 0.00 5.03
1811 1924 3.793144 GTTCGGCTTCAGCGGCAG 61.793 66.667 1.45 0.00 43.26 4.85
1834 1947 3.222173 ACCCAAACAACATCTGTGCTA 57.778 42.857 0.00 0.00 38.67 3.49
1844 1957 4.134379 ACATCTGTGCTATTGACCTCTG 57.866 45.455 0.00 0.00 0.00 3.35
1845 1958 2.680312 TCTGTGCTATTGACCTCTGC 57.320 50.000 0.00 0.00 0.00 4.26
1851 1964 2.692557 TGCTATTGACCTCTGCTCTCTC 59.307 50.000 0.00 0.00 0.00 3.20
1855 1968 1.021920 TGACCTCTGCTCTCTCGACG 61.022 60.000 0.00 0.00 0.00 5.12
1938 2052 2.200373 ACAGCACCATGGTTTACCTC 57.800 50.000 16.84 0.28 36.82 3.85
1966 2080 1.145377 AGGTTTTGCGTCGTCAGGT 59.855 52.632 0.00 0.00 0.00 4.00
1971 2085 1.214367 TTTGCGTCGTCAGGTTCTTC 58.786 50.000 0.00 0.00 0.00 2.87
2037 2154 2.596904 CGGTTTCTATCATCACCGGT 57.403 50.000 0.00 0.00 46.92 5.28
2160 2277 6.367969 TGTTCTAATTAACTCTTGCGTCCTTC 59.632 38.462 0.00 0.00 0.00 3.46
2193 2310 4.602340 ACACTCTAGTTGGTTACAGTGG 57.398 45.455 8.34 0.00 34.34 4.00
2220 2337 4.207891 ACTGTTCTGTCCACCATGTATC 57.792 45.455 0.00 0.00 0.00 2.24
2414 2531 9.270640 CTCAGTATTCATTGCTTATTAGAAGCT 57.729 33.333 12.85 0.00 43.38 3.74
2415 2532 9.049523 TCAGTATTCATTGCTTATTAGAAGCTG 57.950 33.333 12.85 4.02 43.38 4.24
2416 2533 7.802251 CAGTATTCATTGCTTATTAGAAGCTGC 59.198 37.037 12.85 0.00 43.38 5.25
2417 2534 6.956202 ATTCATTGCTTATTAGAAGCTGCT 57.044 33.333 12.85 0.00 43.38 4.24
2418 2535 5.746307 TCATTGCTTATTAGAAGCTGCTG 57.254 39.130 12.85 7.50 43.38 4.41
2419 2536 5.430886 TCATTGCTTATTAGAAGCTGCTGA 58.569 37.500 12.85 9.46 43.38 4.26
2420 2537 5.526479 TCATTGCTTATTAGAAGCTGCTGAG 59.474 40.000 12.85 0.00 43.38 3.35
2421 2538 3.801698 TGCTTATTAGAAGCTGCTGAGG 58.198 45.455 12.85 0.00 43.38 3.86
2422 2539 2.547634 GCTTATTAGAAGCTGCTGAGGC 59.452 50.000 3.74 0.00 40.01 4.70
2423 2540 3.743899 GCTTATTAGAAGCTGCTGAGGCT 60.744 47.826 3.74 1.34 42.31 4.58
2427 2544 2.354343 AAGCTGCTGAGGCTTCCC 59.646 61.111 1.35 0.00 45.45 3.97
2428 2545 3.279504 AAGCTGCTGAGGCTTCCCC 62.280 63.158 1.35 0.00 45.45 4.81
2432 2549 4.722700 GCTGAGGCTTCCCCGCAA 62.723 66.667 0.00 0.00 43.17 4.85
2433 2550 2.034066 CTGAGGCTTCCCCGCAAA 59.966 61.111 0.00 0.00 43.17 3.68
2434 2551 1.603455 CTGAGGCTTCCCCGCAAAA 60.603 57.895 0.00 0.00 43.17 2.44
2435 2552 1.152652 TGAGGCTTCCCCGCAAAAA 60.153 52.632 0.00 0.00 40.71 1.94
2495 2612 4.999751 CTGACTTTTGTTAGTCTGCTCC 57.000 45.455 0.00 0.00 43.92 4.70
2661 2795 0.037326 CTGCTTTCTGGCTGGTACGA 60.037 55.000 0.00 0.00 0.00 3.43
2662 2796 0.613260 TGCTTTCTGGCTGGTACGAT 59.387 50.000 0.00 0.00 0.00 3.73
2740 2874 0.241481 GGCGACAGACTCTCGTTCTT 59.759 55.000 2.04 0.00 33.51 2.52
2743 2877 2.576406 CGACAGACTCTCGTTCTTGTC 58.424 52.381 0.00 0.00 0.00 3.18
2744 2878 2.576406 GACAGACTCTCGTTCTTGTCG 58.424 52.381 0.00 0.00 34.92 4.35
2745 2879 2.219458 ACAGACTCTCGTTCTTGTCGA 58.781 47.619 0.00 0.00 34.92 4.20
2784 2919 2.010670 CGTGAACGTGCAAAGTCCA 58.989 52.632 0.00 0.00 34.11 4.02
2786 2921 1.202087 CGTGAACGTGCAAAGTCCAAA 60.202 47.619 0.00 0.00 34.11 3.28
2787 2922 2.729467 CGTGAACGTGCAAAGTCCAAAA 60.729 45.455 0.00 0.00 34.11 2.44
2795 2930 1.269051 GCAAAGTCCAAAACCACGGAG 60.269 52.381 0.00 0.00 29.98 4.63
2798 2933 2.281208 TCCAAAACCACGGAGCCG 60.281 61.111 7.48 7.48 46.03 5.52
2825 2960 4.783621 GCACATCCCGCTGGCAGA 62.784 66.667 20.86 0.00 0.00 4.26
2826 2961 2.046023 CACATCCCGCTGGCAGAA 60.046 61.111 20.86 0.00 0.00 3.02
2827 2962 1.675310 CACATCCCGCTGGCAGAAA 60.675 57.895 20.86 0.00 0.00 2.52
2828 2963 1.033746 CACATCCCGCTGGCAGAAAT 61.034 55.000 20.86 2.01 0.00 2.17
2829 2964 0.749454 ACATCCCGCTGGCAGAAATC 60.749 55.000 20.86 0.00 0.00 2.17
2830 2965 0.749091 CATCCCGCTGGCAGAAATCA 60.749 55.000 20.86 0.00 0.00 2.57
2831 2966 0.749454 ATCCCGCTGGCAGAAATCAC 60.749 55.000 20.86 0.00 0.00 3.06
2832 2967 1.675310 CCCGCTGGCAGAAATCACA 60.675 57.895 20.86 0.00 0.00 3.58
2833 2968 1.651240 CCCGCTGGCAGAAATCACAG 61.651 60.000 20.86 0.00 0.00 3.66
2834 2969 0.674581 CCGCTGGCAGAAATCACAGA 60.675 55.000 20.86 0.00 32.86 3.41
2835 2970 1.376543 CGCTGGCAGAAATCACAGAT 58.623 50.000 20.86 0.00 32.86 2.90
2836 2971 1.741706 CGCTGGCAGAAATCACAGATT 59.258 47.619 20.86 0.00 32.86 2.40
2837 2972 2.163010 CGCTGGCAGAAATCACAGATTT 59.837 45.455 20.86 4.77 32.86 2.17
2838 2973 3.508762 GCTGGCAGAAATCACAGATTTG 58.491 45.455 20.86 0.00 32.86 2.32
2839 2974 3.192001 GCTGGCAGAAATCACAGATTTGA 59.808 43.478 20.86 0.00 32.86 2.69
2840 2975 4.730657 CTGGCAGAAATCACAGATTTGAC 58.269 43.478 9.42 0.73 32.86 3.18
2841 2976 3.507233 TGGCAGAAATCACAGATTTGACC 59.493 43.478 9.49 8.32 0.00 4.02
2842 2977 3.760684 GGCAGAAATCACAGATTTGACCT 59.239 43.478 9.49 0.00 0.00 3.85
2843 2978 4.142513 GGCAGAAATCACAGATTTGACCTC 60.143 45.833 9.49 0.00 0.00 3.85
2844 2979 4.456911 GCAGAAATCACAGATTTGACCTCA 59.543 41.667 9.49 0.00 0.00 3.86
2845 2980 5.391736 GCAGAAATCACAGATTTGACCTCAG 60.392 44.000 9.49 0.00 0.00 3.35
2846 2981 5.123502 CAGAAATCACAGATTTGACCTCAGG 59.876 44.000 9.49 0.00 0.00 3.86
2847 2982 2.479566 TCACAGATTTGACCTCAGGC 57.520 50.000 0.00 0.00 0.00 4.85
2848 2983 1.699083 TCACAGATTTGACCTCAGGCA 59.301 47.619 0.00 0.00 0.00 4.75
2849 2984 2.082231 CACAGATTTGACCTCAGGCAG 58.918 52.381 0.00 0.00 0.00 4.85
2850 2985 1.980765 ACAGATTTGACCTCAGGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
2851 2986 2.373169 ACAGATTTGACCTCAGGCAGAA 59.627 45.455 0.00 0.00 0.00 3.02
2852 2987 3.181440 ACAGATTTGACCTCAGGCAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
2853 2988 4.015084 CAGATTTGACCTCAGGCAGAAAT 58.985 43.478 0.00 0.00 0.00 2.17
2854 2989 4.096081 CAGATTTGACCTCAGGCAGAAATC 59.904 45.833 12.10 12.10 31.04 2.17
2855 2990 3.507162 TTTGACCTCAGGCAGAAATCA 57.493 42.857 0.00 0.00 0.00 2.57
2856 2991 3.507162 TTGACCTCAGGCAGAAATCAA 57.493 42.857 0.00 0.00 31.30 2.57
2857 2992 3.507162 TGACCTCAGGCAGAAATCAAA 57.493 42.857 0.00 0.00 0.00 2.69
2858 2993 4.038271 TGACCTCAGGCAGAAATCAAAT 57.962 40.909 0.00 0.00 0.00 2.32
2859 2994 4.012374 TGACCTCAGGCAGAAATCAAATC 58.988 43.478 0.00 0.00 0.00 2.17
2860 2995 4.012374 GACCTCAGGCAGAAATCAAATCA 58.988 43.478 0.00 0.00 0.00 2.57
2861 2996 3.760684 ACCTCAGGCAGAAATCAAATCAC 59.239 43.478 0.00 0.00 0.00 3.06
2862 2997 3.760151 CCTCAGGCAGAAATCAAATCACA 59.240 43.478 0.00 0.00 0.00 3.58
2863 2998 4.219070 CCTCAGGCAGAAATCAAATCACAA 59.781 41.667 0.00 0.00 0.00 3.33
2864 2999 5.279106 CCTCAGGCAGAAATCAAATCACAAA 60.279 40.000 0.00 0.00 0.00 2.83
2865 3000 5.531634 TCAGGCAGAAATCAAATCACAAAC 58.468 37.500 0.00 0.00 0.00 2.93
2866 3001 5.302568 TCAGGCAGAAATCAAATCACAAACT 59.697 36.000 0.00 0.00 0.00 2.66
2867 3002 5.404366 CAGGCAGAAATCAAATCACAAACTG 59.596 40.000 0.00 0.00 0.00 3.16
2868 3003 5.302568 AGGCAGAAATCAAATCACAAACTGA 59.697 36.000 0.00 0.00 0.00 3.41
2869 3004 5.403466 GGCAGAAATCAAATCACAAACTGAC 59.597 40.000 0.00 0.00 0.00 3.51
2870 3005 5.403466 GCAGAAATCAAATCACAAACTGACC 59.597 40.000 0.00 0.00 0.00 4.02
2871 3006 6.736794 GCAGAAATCAAATCACAAACTGACCT 60.737 38.462 0.00 0.00 0.00 3.85
2872 3007 6.639686 CAGAAATCAAATCACAAACTGACCTG 59.360 38.462 0.00 0.00 0.00 4.00
2873 3008 6.322201 AGAAATCAAATCACAAACTGACCTGT 59.678 34.615 0.00 0.00 0.00 4.00
2874 3009 6.469782 AATCAAATCACAAACTGACCTGTT 57.530 33.333 0.00 0.00 0.00 3.16
2875 3010 5.499139 TCAAATCACAAACTGACCTGTTC 57.501 39.130 0.00 0.00 0.00 3.18
2876 3011 4.946772 TCAAATCACAAACTGACCTGTTCA 59.053 37.500 0.00 0.00 0.00 3.18
2877 3012 4.900635 AATCACAAACTGACCTGTTCAC 57.099 40.909 0.00 0.00 0.00 3.18
2878 3013 2.276201 TCACAAACTGACCTGTTCACG 58.724 47.619 0.00 0.00 0.00 4.35
2879 3014 2.093921 TCACAAACTGACCTGTTCACGA 60.094 45.455 0.00 0.00 0.00 4.35
2880 3015 2.675844 CACAAACTGACCTGTTCACGAA 59.324 45.455 0.00 0.00 0.00 3.85
2881 3016 3.126171 CACAAACTGACCTGTTCACGAAA 59.874 43.478 0.00 0.00 0.00 3.46
2882 3017 3.754323 ACAAACTGACCTGTTCACGAAAA 59.246 39.130 0.00 0.00 0.00 2.29
2883 3018 4.216687 ACAAACTGACCTGTTCACGAAAAA 59.783 37.500 0.00 0.00 0.00 1.94
2903 3038 6.705863 AAAAATTTCACTCTGCTGACTCTT 57.294 33.333 0.00 0.00 0.00 2.85
2904 3039 6.705863 AAAATTTCACTCTGCTGACTCTTT 57.294 33.333 0.00 0.00 0.00 2.52
2905 3040 5.686159 AATTTCACTCTGCTGACTCTTTG 57.314 39.130 0.00 0.00 0.00 2.77
2906 3041 2.827800 TCACTCTGCTGACTCTTTGG 57.172 50.000 0.00 0.00 0.00 3.28
2907 3042 2.042464 TCACTCTGCTGACTCTTTGGT 58.958 47.619 0.00 0.00 0.00 3.67
2908 3043 2.141517 CACTCTGCTGACTCTTTGGTG 58.858 52.381 0.00 0.00 0.00 4.17
2909 3044 1.765314 ACTCTGCTGACTCTTTGGTGT 59.235 47.619 0.00 0.00 0.00 4.16
2910 3045 2.141517 CTCTGCTGACTCTTTGGTGTG 58.858 52.381 0.00 0.00 0.00 3.82
2911 3046 1.202687 TCTGCTGACTCTTTGGTGTGG 60.203 52.381 0.00 0.00 0.00 4.17
2912 3047 0.819259 TGCTGACTCTTTGGTGTGGC 60.819 55.000 0.00 0.00 0.00 5.01
2913 3048 1.845809 GCTGACTCTTTGGTGTGGCG 61.846 60.000 0.00 0.00 0.00 5.69
2914 3049 1.845809 CTGACTCTTTGGTGTGGCGC 61.846 60.000 0.00 0.00 0.00 6.53
2915 3050 2.594592 ACTCTTTGGTGTGGCGCC 60.595 61.111 22.73 22.73 34.12 6.53
2916 3051 3.365265 CTCTTTGGTGTGGCGCCC 61.365 66.667 26.77 16.24 32.22 6.13
2942 3077 3.925090 GGCGCCGCACCCTACTAT 61.925 66.667 12.58 0.00 0.00 2.12
2943 3078 2.661866 GCGCCGCACCCTACTATG 60.662 66.667 3.15 0.00 0.00 2.23
2944 3079 2.661866 CGCCGCACCCTACTATGC 60.662 66.667 0.00 0.00 38.52 3.14
2945 3080 2.504032 GCCGCACCCTACTATGCA 59.496 61.111 0.00 0.00 42.17 3.96
2946 3081 1.595382 GCCGCACCCTACTATGCAG 60.595 63.158 0.00 0.00 42.17 4.41
2947 3082 1.595382 CCGCACCCTACTATGCAGC 60.595 63.158 0.00 0.00 42.17 5.25
2948 3083 1.951130 CGCACCCTACTATGCAGCG 60.951 63.158 0.00 0.00 42.17 5.18
2949 3084 2.247437 GCACCCTACTATGCAGCGC 61.247 63.158 0.00 0.00 41.65 5.92
2950 3085 1.595382 CACCCTACTATGCAGCGCC 60.595 63.158 2.29 0.00 0.00 6.53
2951 3086 1.762460 ACCCTACTATGCAGCGCCT 60.762 57.895 2.29 0.00 0.00 5.52
2952 3087 1.005630 CCCTACTATGCAGCGCCTC 60.006 63.158 2.29 0.00 0.00 4.70
2953 3088 1.467678 CCCTACTATGCAGCGCCTCT 61.468 60.000 2.29 0.00 0.00 3.69
2954 3089 0.038709 CCTACTATGCAGCGCCTCTC 60.039 60.000 2.29 0.00 0.00 3.20
2955 3090 0.038709 CTACTATGCAGCGCCTCTCC 60.039 60.000 2.29 0.00 0.00 3.71
2956 3091 1.464376 TACTATGCAGCGCCTCTCCC 61.464 60.000 2.29 0.00 0.00 4.30
2957 3092 2.444706 TATGCAGCGCCTCTCCCT 60.445 61.111 2.29 0.00 0.00 4.20
2958 3093 2.037620 CTATGCAGCGCCTCTCCCTT 62.038 60.000 2.29 0.00 0.00 3.95
2959 3094 0.759060 TATGCAGCGCCTCTCCCTTA 60.759 55.000 2.29 0.00 0.00 2.69
2960 3095 2.037620 ATGCAGCGCCTCTCCCTTAG 62.038 60.000 2.29 0.00 0.00 2.18
2961 3096 2.818132 CAGCGCCTCTCCCTTAGG 59.182 66.667 2.29 0.00 37.17 2.69
2966 3101 3.121019 CCTCTCCCTTAGGCGTCG 58.879 66.667 0.00 0.00 0.00 5.12
2967 3102 2.413765 CTCTCCCTTAGGCGTCGC 59.586 66.667 9.22 9.22 0.00 5.19
2968 3103 2.361992 TCTCCCTTAGGCGTCGCA 60.362 61.111 20.50 0.00 0.00 5.10
2969 3104 2.202756 CTCCCTTAGGCGTCGCAC 60.203 66.667 20.50 8.57 0.00 5.34
2970 3105 2.992689 TCCCTTAGGCGTCGCACA 60.993 61.111 20.50 2.32 0.00 4.57
2971 3106 2.186903 CCCTTAGGCGTCGCACAT 59.813 61.111 20.50 6.81 0.00 3.21
2972 3107 1.883084 CCCTTAGGCGTCGCACATC 60.883 63.158 20.50 0.77 0.00 3.06
2973 3108 1.883084 CCTTAGGCGTCGCACATCC 60.883 63.158 20.50 0.35 0.00 3.51
2974 3109 1.141881 CTTAGGCGTCGCACATCCT 59.858 57.895 20.50 8.84 0.00 3.24
2975 3110 1.148157 CTTAGGCGTCGCACATCCTG 61.148 60.000 20.50 0.00 0.00 3.86
2976 3111 3.716539 TAGGCGTCGCACATCCTGC 62.717 63.158 20.50 0.00 43.21 4.85
2979 3114 3.190849 CGTCGCACATCCTGCCAG 61.191 66.667 0.00 0.00 43.84 4.85
2980 3115 3.503363 GTCGCACATCCTGCCAGC 61.503 66.667 0.00 0.00 43.84 4.85
2983 3118 3.807538 GCACATCCTGCCAGCGTG 61.808 66.667 3.57 3.57 40.42 5.34
2984 3119 3.129502 CACATCCTGCCAGCGTGG 61.130 66.667 0.25 0.25 41.55 4.94
2993 3128 4.845580 CCAGCGTGGCAGCCCTAG 62.846 72.222 9.64 0.74 38.01 3.02
2994 3129 4.087892 CAGCGTGGCAGCCCTAGT 62.088 66.667 9.64 0.00 38.01 2.57
2995 3130 3.775654 AGCGTGGCAGCCCTAGTC 61.776 66.667 9.64 0.00 38.01 2.59
2996 3131 4.840005 GCGTGGCAGCCCTAGTCC 62.840 72.222 9.64 0.00 0.00 3.85
2997 3132 3.390521 CGTGGCAGCCCTAGTCCA 61.391 66.667 9.64 0.00 0.00 4.02
2998 3133 2.586792 GTGGCAGCCCTAGTCCAG 59.413 66.667 9.64 0.00 0.00 3.86
2999 3134 2.122729 TGGCAGCCCTAGTCCAGT 59.877 61.111 9.64 0.00 0.00 4.00
3000 3135 1.538876 TGGCAGCCCTAGTCCAGTT 60.539 57.895 9.64 0.00 0.00 3.16
3001 3136 1.078143 GGCAGCCCTAGTCCAGTTG 60.078 63.158 0.00 0.00 0.00 3.16
3002 3137 1.746991 GCAGCCCTAGTCCAGTTGC 60.747 63.158 0.00 0.00 0.00 4.17
3003 3138 1.679311 CAGCCCTAGTCCAGTTGCA 59.321 57.895 0.00 0.00 0.00 4.08
3004 3139 0.392193 CAGCCCTAGTCCAGTTGCAG 60.392 60.000 0.00 0.00 0.00 4.41
3005 3140 1.746991 GCCCTAGTCCAGTTGCAGC 60.747 63.158 0.00 0.00 0.00 5.25
3006 3141 1.078143 CCCTAGTCCAGTTGCAGCC 60.078 63.158 0.00 0.00 0.00 4.85
3007 3142 1.078143 CCTAGTCCAGTTGCAGCCC 60.078 63.158 0.00 0.00 0.00 5.19
3008 3143 1.078143 CTAGTCCAGTTGCAGCCCC 60.078 63.158 0.00 0.00 0.00 5.80
3009 3144 1.841302 CTAGTCCAGTTGCAGCCCCA 61.841 60.000 0.00 0.00 0.00 4.96
3010 3145 2.124507 TAGTCCAGTTGCAGCCCCAC 62.125 60.000 0.00 0.00 0.00 4.61
3011 3146 3.497115 TCCAGTTGCAGCCCCACA 61.497 61.111 0.00 0.00 0.00 4.17
3012 3147 3.297620 CCAGTTGCAGCCCCACAC 61.298 66.667 0.00 0.00 0.00 3.82
3013 3148 3.663176 CAGTTGCAGCCCCACACG 61.663 66.667 0.00 0.00 0.00 4.49
3031 3166 2.358615 CACCTGTGCAGCGCCTAA 60.359 61.111 2.29 0.00 0.00 2.69
3032 3167 2.046892 ACCTGTGCAGCGCCTAAG 60.047 61.111 2.29 0.00 0.00 2.18
3033 3168 2.821366 CCTGTGCAGCGCCTAAGG 60.821 66.667 2.29 0.06 0.00 2.69
3034 3169 2.821366 CTGTGCAGCGCCTAAGGG 60.821 66.667 2.29 0.00 0.00 3.95
3051 3186 4.394712 GCTAGGCGCCACACACCT 62.395 66.667 31.54 8.51 37.61 4.00
3052 3187 2.434884 CTAGGCGCCACACACCTG 60.435 66.667 31.54 4.92 34.92 4.00
3053 3188 3.238497 TAGGCGCCACACACCTGT 61.238 61.111 31.54 6.76 34.92 4.00
3054 3189 1.884075 CTAGGCGCCACACACCTGTA 61.884 60.000 31.54 7.71 34.92 2.74
3055 3190 1.473497 TAGGCGCCACACACCTGTAA 61.473 55.000 31.54 0.00 34.92 2.41
3056 3191 1.674322 GGCGCCACACACCTGTAAT 60.674 57.895 24.80 0.00 0.00 1.89
3057 3192 1.501741 GCGCCACACACCTGTAATG 59.498 57.895 0.00 0.00 0.00 1.90
3058 3193 1.234615 GCGCCACACACCTGTAATGT 61.235 55.000 0.00 0.00 0.00 2.71
3064 3199 0.166597 CACACCTGTAATGTGCAGCG 59.833 55.000 0.00 0.00 40.94 5.18
3065 3200 1.135315 CACCTGTAATGTGCAGCGC 59.865 57.895 0.00 0.00 32.93 5.92
3066 3201 2.040544 ACCTGTAATGTGCAGCGCC 61.041 57.895 2.29 0.00 32.93 6.53
3067 3202 1.746615 CCTGTAATGTGCAGCGCCT 60.747 57.895 2.29 0.00 32.93 5.52
3068 3203 0.461870 CCTGTAATGTGCAGCGCCTA 60.462 55.000 2.29 0.00 32.93 3.93
3069 3204 0.933097 CTGTAATGTGCAGCGCCTAG 59.067 55.000 2.29 0.00 0.00 3.02
3081 3216 4.168291 GCCTAGCTCTTGGGCGCT 62.168 66.667 7.64 0.00 40.15 5.92
3082 3217 2.797278 GCCTAGCTCTTGGGCGCTA 61.797 63.158 7.64 0.00 37.68 4.26
3083 3218 1.068250 CCTAGCTCTTGGGCGCTAC 59.932 63.158 7.64 0.66 37.68 3.58
3084 3219 1.676678 CCTAGCTCTTGGGCGCTACA 61.677 60.000 7.64 3.94 37.68 2.74
3085 3220 0.528684 CTAGCTCTTGGGCGCTACAC 60.529 60.000 7.64 0.00 37.68 2.90
3086 3221 1.254975 TAGCTCTTGGGCGCTACACA 61.255 55.000 7.64 0.00 37.68 3.72
3087 3222 2.103042 GCTCTTGGGCGCTACACAG 61.103 63.158 7.64 6.86 0.00 3.66
3088 3223 1.293498 CTCTTGGGCGCTACACAGT 59.707 57.895 7.64 0.00 0.00 3.55
3089 3224 1.005037 TCTTGGGCGCTACACAGTG 60.005 57.895 7.64 0.00 35.26 3.66
3090 3225 1.005037 CTTGGGCGCTACACAGTGA 60.005 57.895 7.81 0.00 33.92 3.41
3091 3226 1.291877 CTTGGGCGCTACACAGTGAC 61.292 60.000 7.81 0.00 39.82 3.67
3092 3227 1.754380 TTGGGCGCTACACAGTGACT 61.754 55.000 7.81 0.00 40.45 3.41
3093 3228 1.004918 GGGCGCTACACAGTGACTT 60.005 57.895 7.81 0.00 40.45 3.01
3094 3229 0.245539 GGGCGCTACACAGTGACTTA 59.754 55.000 7.81 0.00 40.45 2.24
3095 3230 1.337447 GGGCGCTACACAGTGACTTAA 60.337 52.381 7.81 0.00 40.45 1.85
3096 3231 1.993370 GGCGCTACACAGTGACTTAAG 59.007 52.381 7.81 0.00 37.33 1.85
3097 3232 1.390463 GCGCTACACAGTGACTTAAGC 59.610 52.381 7.81 6.99 33.92 3.09
3098 3233 1.649171 CGCTACACAGTGACTTAAGCG 59.351 52.381 7.81 14.40 44.22 4.68
3099 3234 1.390463 GCTACACAGTGACTTAAGCGC 59.610 52.381 7.81 0.00 0.00 5.92
3100 3235 1.649171 CTACACAGTGACTTAAGCGCG 59.351 52.381 7.81 0.00 0.00 6.86
3101 3236 0.944311 ACACAGTGACTTAAGCGCGG 60.944 55.000 8.83 5.82 0.00 6.46
3102 3237 2.027625 ACAGTGACTTAAGCGCGGC 61.028 57.895 8.83 0.00 0.00 6.53
3103 3238 2.434359 AGTGACTTAAGCGCGGCC 60.434 61.111 8.83 0.00 0.00 6.13
3104 3239 3.849953 GTGACTTAAGCGCGGCCG 61.850 66.667 24.05 24.05 37.57 6.13
3128 3263 2.750350 CCCGACCAGGCAGTTCTT 59.250 61.111 0.00 0.00 39.21 2.52
3129 3264 1.376037 CCCGACCAGGCAGTTCTTC 60.376 63.158 0.00 0.00 39.21 2.87
3130 3265 1.738099 CCGACCAGGCAGTTCTTCG 60.738 63.158 0.00 0.00 0.00 3.79
3131 3266 1.006102 CGACCAGGCAGTTCTTCGT 60.006 57.895 0.00 0.00 0.00 3.85
3132 3267 1.009389 CGACCAGGCAGTTCTTCGTC 61.009 60.000 0.00 0.00 0.00 4.20
3133 3268 0.318762 GACCAGGCAGTTCTTCGTCT 59.681 55.000 0.00 0.00 0.00 4.18
3134 3269 0.318762 ACCAGGCAGTTCTTCGTCTC 59.681 55.000 0.00 0.00 0.00 3.36
3135 3270 0.605589 CCAGGCAGTTCTTCGTCTCT 59.394 55.000 0.00 0.00 0.00 3.10
3136 3271 1.403514 CCAGGCAGTTCTTCGTCTCTC 60.404 57.143 0.00 0.00 0.00 3.20
3137 3272 0.892063 AGGCAGTTCTTCGTCTCTCC 59.108 55.000 0.00 0.00 0.00 3.71
3138 3273 0.456995 GGCAGTTCTTCGTCTCTCCG 60.457 60.000 0.00 0.00 0.00 4.63
3139 3274 1.073768 GCAGTTCTTCGTCTCTCCGC 61.074 60.000 0.00 0.00 0.00 5.54
3140 3275 0.523966 CAGTTCTTCGTCTCTCCGCT 59.476 55.000 0.00 0.00 0.00 5.52
3141 3276 0.806241 AGTTCTTCGTCTCTCCGCTC 59.194 55.000 0.00 0.00 0.00 5.03
3142 3277 0.806241 GTTCTTCGTCTCTCCGCTCT 59.194 55.000 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.506810 TGCCAGTTTCACAAAAACTTCG 58.493 40.909 0.58 0.00 38.32 3.79
67 68 0.108585 TTGCCTTTCTCCTCGCTGTT 59.891 50.000 0.00 0.00 0.00 3.16
104 106 2.360726 TGTCGCGTGAGGGCTCTA 60.361 61.111 5.77 0.00 44.70 2.43
180 183 3.181493 GGGTATTGCTCTTCTCGACGTTA 60.181 47.826 0.00 0.00 0.00 3.18
219 222 2.501602 GCCTTTGGCCTTGCACTGT 61.502 57.895 3.32 0.00 44.06 3.55
254 257 3.317149 CCTGCATCGACATGGATTTTGAT 59.683 43.478 0.00 0.00 28.54 2.57
463 466 1.772063 GCACCACTCGTTTTGCGTCT 61.772 55.000 0.00 0.00 42.13 4.18
474 477 4.241681 GCTAGATATAGCTTGCACCACTC 58.758 47.826 17.63 0.00 39.84 3.51
486 489 3.580458 ACCCCTGCTGTTGCTAGATATAG 59.420 47.826 0.00 0.00 40.48 1.31
556 559 6.568653 GCCCTTCAAAAACTATCTGACAGTTC 60.569 42.308 1.23 0.00 35.19 3.01
588 591 5.983720 GCTAAACTATGAGCATCTCCGTTAA 59.016 40.000 0.00 0.00 38.62 2.01
656 660 4.422057 ACAAAAAGGGTTATGGGGGTTAG 58.578 43.478 0.00 0.00 0.00 2.34
683 687 6.261158 TCATTCATCGAAAACCACAGTTTGTA 59.739 34.615 0.00 0.00 45.54 2.41
773 781 2.687566 GGGAAGGGGAAGGCGAGA 60.688 66.667 0.00 0.00 0.00 4.04
784 792 0.399233 AGAGGATTCGGGAGGGAAGG 60.399 60.000 0.00 0.00 0.00 3.46
1020 1037 2.158957 GGCGTAATCCTTCATCACCAGA 60.159 50.000 0.00 0.00 0.00 3.86
1132 1149 0.622665 ATCTTGTCCTTCCTGGCCTG 59.377 55.000 3.32 2.54 35.26 4.85
1133 1150 0.915364 GATCTTGTCCTTCCTGGCCT 59.085 55.000 3.32 0.00 35.26 5.19
1134 1151 0.620556 TGATCTTGTCCTTCCTGGCC 59.379 55.000 0.00 0.00 35.26 5.36
1146 1163 1.599667 GGCAGCATCGCATTGATCTTG 60.600 52.381 0.00 0.00 34.13 3.02
1150 1167 1.378882 AACGGCAGCATCGCATTGAT 61.379 50.000 0.00 0.00 38.01 2.57
1374 1481 0.606604 TGGGAGTTCGCCAGTTAGAC 59.393 55.000 0.00 0.00 0.00 2.59
1446 1553 3.506096 TAGAGCACGTCGGAGCCG 61.506 66.667 1.74 1.74 41.35 5.52
1447 1554 2.102553 GTAGAGCACGTCGGAGCC 59.897 66.667 8.11 1.56 0.00 4.70
1482 1589 0.445436 GTACCTCGAAGTCGCTCGAA 59.555 55.000 0.00 0.00 46.53 3.71
1499 1606 0.034337 GGGGTTGCAGTGAACGAGTA 59.966 55.000 0.00 0.00 0.00 2.59
1500 1607 1.227853 GGGGTTGCAGTGAACGAGT 60.228 57.895 0.00 0.00 0.00 4.18
1506 1613 0.764369 AGTCAGAGGGGTTGCAGTGA 60.764 55.000 0.00 0.00 0.00 3.41
1520 1627 4.440802 CGATCCTCCCAAACTTAGAGTCAG 60.441 50.000 0.00 0.00 0.00 3.51
1521 1628 3.447586 CGATCCTCCCAAACTTAGAGTCA 59.552 47.826 0.00 0.00 0.00 3.41
1523 1630 3.709587 TCGATCCTCCCAAACTTAGAGT 58.290 45.455 0.00 0.00 0.00 3.24
1524 1631 4.502259 CCATCGATCCTCCCAAACTTAGAG 60.502 50.000 0.00 0.00 0.00 2.43
1525 1632 3.388024 CCATCGATCCTCCCAAACTTAGA 59.612 47.826 0.00 0.00 0.00 2.10
1526 1633 3.388024 TCCATCGATCCTCCCAAACTTAG 59.612 47.826 0.00 0.00 0.00 2.18
1527 1634 3.380393 TCCATCGATCCTCCCAAACTTA 58.620 45.455 0.00 0.00 0.00 2.24
1528 1635 2.171448 CTCCATCGATCCTCCCAAACTT 59.829 50.000 0.00 0.00 0.00 2.66
1529 1636 1.765314 CTCCATCGATCCTCCCAAACT 59.235 52.381 0.00 0.00 0.00 2.66
1531 1638 0.469917 GCTCCATCGATCCTCCCAAA 59.530 55.000 0.00 0.00 0.00 3.28
1533 1640 0.482887 TAGCTCCATCGATCCTCCCA 59.517 55.000 0.00 0.00 0.00 4.37
1582 1689 1.348036 AGGATTATCAAGGTAGGGCGC 59.652 52.381 0.00 0.00 0.00 6.53
1602 1709 0.911769 GGATGGTGTGATCCTGACCA 59.088 55.000 9.36 9.36 43.83 4.02
1607 1714 2.496297 AGGAATGGATGGTGTGATCCT 58.504 47.619 0.00 0.00 42.36 3.24
1670 1780 0.968405 GCCAAAGCCATTGTCAGGAA 59.032 50.000 0.00 0.00 37.32 3.36
1671 1781 0.178967 TGCCAAAGCCATTGTCAGGA 60.179 50.000 0.00 0.00 37.32 3.86
1673 1783 0.037975 GGTGCCAAAGCCATTGTCAG 60.038 55.000 0.00 0.00 37.32 3.51
1674 1784 0.469705 AGGTGCCAAAGCCATTGTCA 60.470 50.000 0.00 0.00 37.32 3.58
1707 1820 2.746375 GGTCCACTCATGGCCGGAT 61.746 63.158 5.05 0.00 46.80 4.18
1711 1824 1.379044 CCTTGGTCCACTCATGGCC 60.379 63.158 0.00 0.00 46.80 5.36
1716 1829 3.636231 CCGGCCTTGGTCCACTCA 61.636 66.667 0.00 0.00 0.00 3.41
1783 1896 3.056328 GCCGAACCAGAGGTTGCC 61.056 66.667 6.10 0.00 46.95 4.52
1811 1924 2.472816 CACAGATGTTGTTTGGGTTGC 58.527 47.619 0.00 0.00 38.16 4.17
1834 1947 1.748493 GTCGAGAGAGCAGAGGTCAAT 59.252 52.381 0.00 0.00 43.49 2.57
1844 1957 2.474612 GGAGGACCGTCGAGAGAGC 61.475 68.421 0.00 0.00 43.49 4.09
1845 1958 1.820481 GGGAGGACCGTCGAGAGAG 60.820 68.421 0.00 0.00 43.49 3.20
1851 1964 2.995574 ACCTTGGGAGGACCGTCG 60.996 66.667 0.00 0.00 46.74 5.12
1855 1968 2.352805 CAGCACCTTGGGAGGACC 59.647 66.667 0.00 0.00 46.74 4.46
1938 2052 2.733945 CAAAACCTGTTGCCCCCG 59.266 61.111 0.00 0.00 0.00 5.73
1966 2080 2.481185 GTCCATTGTAAACGCCGAAGAA 59.519 45.455 0.00 0.00 0.00 2.52
1971 2085 1.650314 GGGGTCCATTGTAAACGCCG 61.650 60.000 0.00 0.00 36.46 6.46
2079 2196 1.467734 CTGCTCTTGTGCTTGACCATC 59.532 52.381 0.00 0.00 0.00 3.51
2160 2277 3.378339 ACTAGAGTGTTGAAACCGAACG 58.622 45.455 0.00 0.00 0.00 3.95
2193 2310 3.013921 TGGTGGACAGAACAGTTGAAAC 58.986 45.455 0.00 0.00 0.00 2.78
2415 2532 4.722700 TTGCGGGGAAGCCTCAGC 62.723 66.667 0.00 0.00 40.32 4.26
2416 2533 1.178534 TTTTTGCGGGGAAGCCTCAG 61.179 55.000 0.00 0.00 36.02 3.35
2417 2534 1.152652 TTTTTGCGGGGAAGCCTCA 60.153 52.632 0.00 0.00 36.02 3.86
2418 2535 3.771978 TTTTTGCGGGGAAGCCTC 58.228 55.556 0.00 0.00 36.02 4.70
2438 2555 1.885233 GAGCCTCAGCAGCTTCTTTTT 59.115 47.619 0.00 0.00 41.75 1.94
2439 2556 1.073603 AGAGCCTCAGCAGCTTCTTTT 59.926 47.619 0.00 0.00 41.75 2.27
2440 2557 0.691904 AGAGCCTCAGCAGCTTCTTT 59.308 50.000 0.00 0.00 41.75 2.52
2441 2558 0.249955 GAGAGCCTCAGCAGCTTCTT 59.750 55.000 0.00 0.00 41.75 2.52
2442 2559 1.616091 GGAGAGCCTCAGCAGCTTCT 61.616 60.000 0.00 0.00 41.75 2.85
2443 2560 1.153389 GGAGAGCCTCAGCAGCTTC 60.153 63.158 0.00 0.00 41.75 3.86
2444 2561 1.486997 TTGGAGAGCCTCAGCAGCTT 61.487 55.000 0.00 0.00 41.75 3.74
2445 2562 1.486997 TTTGGAGAGCCTCAGCAGCT 61.487 55.000 0.00 0.00 45.23 4.24
2446 2563 0.607489 TTTTGGAGAGCCTCAGCAGC 60.607 55.000 0.00 0.00 43.56 5.25
2447 2564 2.125773 ATTTTGGAGAGCCTCAGCAG 57.874 50.000 0.00 0.00 43.56 4.24
2448 2565 2.592102 AATTTTGGAGAGCCTCAGCA 57.408 45.000 0.00 0.00 43.56 4.41
2661 2795 6.012745 AGTCCCTTTGAAAAACTGCAGATAT 58.987 36.000 23.35 0.59 0.00 1.63
2662 2796 5.385198 AGTCCCTTTGAAAAACTGCAGATA 58.615 37.500 23.35 0.00 0.00 1.98
2740 2874 7.060289 GTGCGAGTTTATTTATATCGATCGACA 59.940 37.037 22.06 9.97 35.47 4.35
2743 2877 6.032146 ACGTGCGAGTTTATTTATATCGATCG 59.968 38.462 9.36 9.36 37.20 3.69
2744 2878 7.060289 TCACGTGCGAGTTTATTTATATCGATC 59.940 37.037 11.67 0.00 35.47 3.69
2745 2879 6.859508 TCACGTGCGAGTTTATTTATATCGAT 59.140 34.615 11.67 2.16 35.47 3.59
2775 2910 0.741915 TCCGTGGTTTTGGACTTTGC 59.258 50.000 0.00 0.00 0.00 3.68
2784 2919 3.284449 GTGCGGCTCCGTGGTTTT 61.284 61.111 10.24 0.00 42.09 2.43
2786 2921 4.555709 TTGTGCGGCTCCGTGGTT 62.556 61.111 10.24 0.00 42.09 3.67
2787 2922 4.988598 CTTGTGCGGCTCCGTGGT 62.989 66.667 10.24 0.00 42.09 4.16
2798 2933 2.126734 GGATGTGCGTGCTTGTGC 60.127 61.111 0.00 0.00 40.20 4.57
2821 2956 4.456911 TGAGGTCAAATCTGTGATTTCTGC 59.543 41.667 2.92 0.00 0.00 4.26
2822 2957 5.123502 CCTGAGGTCAAATCTGTGATTTCTG 59.876 44.000 2.92 0.00 0.00 3.02
2823 2958 5.251764 CCTGAGGTCAAATCTGTGATTTCT 58.748 41.667 2.92 0.00 0.00 2.52
2824 2959 4.142513 GCCTGAGGTCAAATCTGTGATTTC 60.143 45.833 0.00 0.00 0.00 2.17
2825 2960 3.760684 GCCTGAGGTCAAATCTGTGATTT 59.239 43.478 0.00 0.25 0.00 2.17
2826 2961 3.245016 TGCCTGAGGTCAAATCTGTGATT 60.245 43.478 0.00 0.00 0.00 2.57
2827 2962 2.306805 TGCCTGAGGTCAAATCTGTGAT 59.693 45.455 0.00 0.00 0.00 3.06
2828 2963 1.699083 TGCCTGAGGTCAAATCTGTGA 59.301 47.619 0.00 0.00 0.00 3.58
2829 2964 2.082231 CTGCCTGAGGTCAAATCTGTG 58.918 52.381 0.00 0.00 0.00 3.66
2830 2965 1.980765 TCTGCCTGAGGTCAAATCTGT 59.019 47.619 0.00 0.00 0.00 3.41
2831 2966 2.775911 TCTGCCTGAGGTCAAATCTG 57.224 50.000 0.00 0.00 0.00 2.90
2832 2967 3.795688 TTTCTGCCTGAGGTCAAATCT 57.204 42.857 0.00 0.00 0.00 2.40
2833 2968 4.012374 TGATTTCTGCCTGAGGTCAAATC 58.988 43.478 17.71 17.71 0.00 2.17
2834 2969 4.038271 TGATTTCTGCCTGAGGTCAAAT 57.962 40.909 0.00 2.33 0.00 2.32
2835 2970 3.507162 TGATTTCTGCCTGAGGTCAAA 57.493 42.857 0.00 0.00 0.00 2.69
2836 2971 3.507162 TTGATTTCTGCCTGAGGTCAA 57.493 42.857 0.00 0.00 31.83 3.18
2837 2972 3.507162 TTTGATTTCTGCCTGAGGTCA 57.493 42.857 0.00 0.00 0.00 4.02
2838 2973 4.012374 TGATTTGATTTCTGCCTGAGGTC 58.988 43.478 0.00 0.00 0.00 3.85
2839 2974 3.760684 GTGATTTGATTTCTGCCTGAGGT 59.239 43.478 0.00 0.00 0.00 3.85
2840 2975 3.760151 TGTGATTTGATTTCTGCCTGAGG 59.240 43.478 0.00 0.00 0.00 3.86
2841 2976 5.381174 TTGTGATTTGATTTCTGCCTGAG 57.619 39.130 0.00 0.00 0.00 3.35
2842 2977 5.302568 AGTTTGTGATTTGATTTCTGCCTGA 59.697 36.000 0.00 0.00 0.00 3.86
2843 2978 5.404366 CAGTTTGTGATTTGATTTCTGCCTG 59.596 40.000 0.00 0.00 0.00 4.85
2844 2979 5.302568 TCAGTTTGTGATTTGATTTCTGCCT 59.697 36.000 0.00 0.00 0.00 4.75
2845 2980 5.403466 GTCAGTTTGTGATTTGATTTCTGCC 59.597 40.000 0.00 0.00 37.56 4.85
2846 2981 5.403466 GGTCAGTTTGTGATTTGATTTCTGC 59.597 40.000 0.00 0.00 37.56 4.26
2847 2982 6.639686 CAGGTCAGTTTGTGATTTGATTTCTG 59.360 38.462 0.00 0.00 37.56 3.02
2848 2983 6.322201 ACAGGTCAGTTTGTGATTTGATTTCT 59.678 34.615 0.00 0.00 37.56 2.52
2849 2984 6.507023 ACAGGTCAGTTTGTGATTTGATTTC 58.493 36.000 0.00 0.00 37.56 2.17
2850 2985 6.469782 ACAGGTCAGTTTGTGATTTGATTT 57.530 33.333 0.00 0.00 37.56 2.17
2851 2986 6.096705 TGAACAGGTCAGTTTGTGATTTGATT 59.903 34.615 0.00 0.00 37.56 2.57
2852 2987 5.593909 TGAACAGGTCAGTTTGTGATTTGAT 59.406 36.000 0.00 0.00 37.56 2.57
2853 2988 4.946772 TGAACAGGTCAGTTTGTGATTTGA 59.053 37.500 0.00 0.00 37.56 2.69
2854 2989 5.036737 GTGAACAGGTCAGTTTGTGATTTG 58.963 41.667 0.00 0.00 37.56 2.32
2855 2990 4.201910 CGTGAACAGGTCAGTTTGTGATTT 60.202 41.667 0.00 0.00 37.56 2.17
2856 2991 3.312421 CGTGAACAGGTCAGTTTGTGATT 59.688 43.478 0.00 0.00 37.56 2.57
2857 2992 2.872245 CGTGAACAGGTCAGTTTGTGAT 59.128 45.455 0.00 0.00 37.56 3.06
2858 2993 2.093921 TCGTGAACAGGTCAGTTTGTGA 60.094 45.455 0.00 0.00 36.74 3.58
2859 2994 2.276201 TCGTGAACAGGTCAGTTTGTG 58.724 47.619 0.00 0.00 36.74 3.33
2860 2995 2.684001 TCGTGAACAGGTCAGTTTGT 57.316 45.000 0.00 0.00 36.74 2.83
2861 2996 4.349663 TTTTCGTGAACAGGTCAGTTTG 57.650 40.909 0.00 0.00 36.74 2.93
2880 3015 6.705863 AAGAGTCAGCAGAGTGAAATTTTT 57.294 33.333 0.00 0.00 0.00 1.94
2881 3016 6.460676 CCAAAGAGTCAGCAGAGTGAAATTTT 60.461 38.462 0.00 0.00 0.00 1.82
2882 3017 5.009410 CCAAAGAGTCAGCAGAGTGAAATTT 59.991 40.000 0.00 0.00 0.00 1.82
2883 3018 4.518211 CCAAAGAGTCAGCAGAGTGAAATT 59.482 41.667 0.00 0.00 0.00 1.82
2884 3019 4.070716 CCAAAGAGTCAGCAGAGTGAAAT 58.929 43.478 0.00 0.00 0.00 2.17
2885 3020 3.118261 ACCAAAGAGTCAGCAGAGTGAAA 60.118 43.478 0.00 0.00 0.00 2.69
2886 3021 2.435805 ACCAAAGAGTCAGCAGAGTGAA 59.564 45.455 0.00 0.00 0.00 3.18
2887 3022 2.042464 ACCAAAGAGTCAGCAGAGTGA 58.958 47.619 0.00 0.00 0.00 3.41
2888 3023 2.141517 CACCAAAGAGTCAGCAGAGTG 58.858 52.381 0.00 0.00 0.00 3.51
2889 3024 1.765314 ACACCAAAGAGTCAGCAGAGT 59.235 47.619 0.00 0.00 0.00 3.24
2890 3025 2.141517 CACACCAAAGAGTCAGCAGAG 58.858 52.381 0.00 0.00 0.00 3.35
2891 3026 1.202687 CCACACCAAAGAGTCAGCAGA 60.203 52.381 0.00 0.00 0.00 4.26
2892 3027 1.233019 CCACACCAAAGAGTCAGCAG 58.767 55.000 0.00 0.00 0.00 4.24
2893 3028 0.819259 GCCACACCAAAGAGTCAGCA 60.819 55.000 0.00 0.00 0.00 4.41
2894 3029 1.845809 CGCCACACCAAAGAGTCAGC 61.846 60.000 0.00 0.00 0.00 4.26
2895 3030 1.845809 GCGCCACACCAAAGAGTCAG 61.846 60.000 0.00 0.00 0.00 3.51
2896 3031 1.891919 GCGCCACACCAAAGAGTCA 60.892 57.895 0.00 0.00 0.00 3.41
2897 3032 2.617274 GGCGCCACACCAAAGAGTC 61.617 63.158 24.80 0.00 0.00 3.36
2898 3033 2.594592 GGCGCCACACCAAAGAGT 60.595 61.111 24.80 0.00 0.00 3.24
2899 3034 3.365265 GGGCGCCACACCAAAGAG 61.365 66.667 30.85 0.00 0.00 2.85
2925 3060 3.925090 ATAGTAGGGTGCGGCGCC 61.925 66.667 30.82 24.06 0.00 6.53
2926 3061 2.661866 CATAGTAGGGTGCGGCGC 60.662 66.667 27.44 27.44 0.00 6.53
2927 3062 2.661866 GCATAGTAGGGTGCGGCG 60.662 66.667 0.51 0.51 0.00 6.46
2928 3063 1.595382 CTGCATAGTAGGGTGCGGC 60.595 63.158 0.00 0.00 44.11 6.53
2929 3064 4.758692 CTGCATAGTAGGGTGCGG 57.241 61.111 0.00 0.00 44.11 5.69
2930 3065 1.951130 CGCTGCATAGTAGGGTGCG 60.951 63.158 0.00 0.00 44.11 5.34
2931 3066 2.247437 GCGCTGCATAGTAGGGTGC 61.247 63.158 0.00 0.00 41.61 5.01
2932 3067 1.595382 GGCGCTGCATAGTAGGGTG 60.595 63.158 7.64 0.00 0.00 4.61
2933 3068 1.749334 GAGGCGCTGCATAGTAGGGT 61.749 60.000 7.64 0.00 0.00 4.34
2934 3069 1.005630 GAGGCGCTGCATAGTAGGG 60.006 63.158 7.64 0.00 0.00 3.53
2935 3070 0.038709 GAGAGGCGCTGCATAGTAGG 60.039 60.000 7.64 0.00 0.00 3.18
2936 3071 0.038709 GGAGAGGCGCTGCATAGTAG 60.039 60.000 7.64 0.00 34.66 2.57
2937 3072 1.464376 GGGAGAGGCGCTGCATAGTA 61.464 60.000 12.29 0.00 36.54 1.82
2938 3073 2.801631 GGGAGAGGCGCTGCATAGT 61.802 63.158 12.29 0.00 36.54 2.12
2939 3074 2.030262 GGGAGAGGCGCTGCATAG 59.970 66.667 12.29 0.00 36.54 2.23
2940 3075 0.759060 TAAGGGAGAGGCGCTGCATA 60.759 55.000 12.29 1.44 40.06 3.14
2941 3076 2.037620 CTAAGGGAGAGGCGCTGCAT 62.038 60.000 12.29 0.65 40.06 3.96
2942 3077 2.683572 TAAGGGAGAGGCGCTGCA 60.684 61.111 12.29 0.00 40.06 4.41
2943 3078 2.107953 CTAAGGGAGAGGCGCTGC 59.892 66.667 7.64 0.06 40.06 5.25
2944 3079 2.818132 CCTAAGGGAGAGGCGCTG 59.182 66.667 7.64 0.00 40.06 5.18
2949 3084 3.121019 CGACGCCTAAGGGAGAGG 58.879 66.667 0.00 0.00 36.25 3.69
2950 3085 2.413765 GCGACGCCTAAGGGAGAG 59.586 66.667 9.14 0.00 36.25 3.20
2951 3086 2.361992 TGCGACGCCTAAGGGAGA 60.362 61.111 18.69 0.00 36.25 3.71
2952 3087 2.202756 GTGCGACGCCTAAGGGAG 60.203 66.667 18.69 0.00 38.41 4.30
2953 3088 2.292794 GATGTGCGACGCCTAAGGGA 62.293 60.000 18.69 0.00 33.58 4.20
2954 3089 1.883084 GATGTGCGACGCCTAAGGG 60.883 63.158 18.69 0.00 0.00 3.95
2955 3090 1.883084 GGATGTGCGACGCCTAAGG 60.883 63.158 18.69 0.00 0.00 2.69
2956 3091 1.141881 AGGATGTGCGACGCCTAAG 59.858 57.895 18.69 0.00 0.00 2.18
2957 3092 1.153647 CAGGATGTGCGACGCCTAA 60.154 57.895 18.69 2.73 0.00 2.69
2958 3093 2.494445 CAGGATGTGCGACGCCTA 59.506 61.111 18.69 6.47 0.00 3.93
2967 3102 3.129502 CCACGCTGGCAGGATGTG 61.130 66.667 17.64 9.10 39.31 3.21
2976 3111 4.845580 CTAGGGCTGCCACGCTGG 62.846 72.222 22.05 6.71 41.55 4.85
2977 3112 4.087892 ACTAGGGCTGCCACGCTG 62.088 66.667 22.05 7.84 34.29 5.18
2978 3113 3.775654 GACTAGGGCTGCCACGCT 61.776 66.667 22.05 11.05 36.67 5.07
2979 3114 4.840005 GGACTAGGGCTGCCACGC 62.840 72.222 22.05 2.80 0.00 5.34
2980 3115 3.376935 CTGGACTAGGGCTGCCACG 62.377 68.421 22.05 10.15 0.00 4.94
2981 3116 1.842381 AACTGGACTAGGGCTGCCAC 61.842 60.000 22.05 10.03 0.00 5.01
2982 3117 1.538876 AACTGGACTAGGGCTGCCA 60.539 57.895 22.05 0.00 0.00 4.92
2983 3118 1.078143 CAACTGGACTAGGGCTGCC 60.078 63.158 11.05 11.05 0.00 4.85
2984 3119 1.746991 GCAACTGGACTAGGGCTGC 60.747 63.158 0.00 0.00 0.00 5.25
2985 3120 0.392193 CTGCAACTGGACTAGGGCTG 60.392 60.000 0.00 2.84 33.52 4.85
2986 3121 1.986413 CTGCAACTGGACTAGGGCT 59.014 57.895 0.00 0.00 33.52 5.19
2987 3122 1.746991 GCTGCAACTGGACTAGGGC 60.747 63.158 0.00 0.00 0.00 5.19
2988 3123 1.078143 GGCTGCAACTGGACTAGGG 60.078 63.158 0.50 0.00 0.00 3.53
2989 3124 1.078143 GGGCTGCAACTGGACTAGG 60.078 63.158 0.50 0.00 0.00 3.02
2990 3125 1.078143 GGGGCTGCAACTGGACTAG 60.078 63.158 0.50 0.00 0.00 2.57
2991 3126 1.845664 TGGGGCTGCAACTGGACTA 60.846 57.895 0.50 0.00 0.00 2.59
2992 3127 3.177884 TGGGGCTGCAACTGGACT 61.178 61.111 0.50 0.00 0.00 3.85
2993 3128 2.985847 GTGGGGCTGCAACTGGAC 60.986 66.667 0.50 0.00 0.00 4.02
2994 3129 3.497115 TGTGGGGCTGCAACTGGA 61.497 61.111 0.50 0.00 0.00 3.86
2995 3130 3.297620 GTGTGGGGCTGCAACTGG 61.298 66.667 0.50 0.00 0.00 4.00
2996 3131 3.663176 CGTGTGGGGCTGCAACTG 61.663 66.667 0.50 0.00 0.00 3.16
3014 3149 2.358615 TTAGGCGCTGCACAGGTG 60.359 61.111 7.64 0.00 0.00 4.00
3015 3150 2.046892 CTTAGGCGCTGCACAGGT 60.047 61.111 7.64 0.00 0.00 4.00
3016 3151 2.821366 CCTTAGGCGCTGCACAGG 60.821 66.667 7.64 2.12 0.00 4.00
3017 3152 2.821366 CCCTTAGGCGCTGCACAG 60.821 66.667 7.64 0.00 0.00 3.66
3039 3174 1.234615 ACATTACAGGTGTGTGGCGC 61.235 55.000 0.00 0.00 37.52 6.53
3040 3175 0.516877 CACATTACAGGTGTGTGGCG 59.483 55.000 10.21 0.00 41.48 5.69
3041 3176 0.240945 GCACATTACAGGTGTGTGGC 59.759 55.000 16.29 8.79 46.59 5.01
3042 3177 1.536766 CTGCACATTACAGGTGTGTGG 59.463 52.381 16.29 0.00 46.59 4.17
3043 3178 1.069022 GCTGCACATTACAGGTGTGTG 60.069 52.381 12.53 12.53 46.59 3.82
3044 3179 1.238439 GCTGCACATTACAGGTGTGT 58.762 50.000 7.92 0.00 46.59 3.72
3046 3181 1.577328 GCGCTGCACATTACAGGTGT 61.577 55.000 0.00 0.00 38.51 4.16
3047 3182 1.135315 GCGCTGCACATTACAGGTG 59.865 57.895 0.00 0.00 39.25 4.00
3048 3183 2.040544 GGCGCTGCACATTACAGGT 61.041 57.895 7.64 0.00 35.62 4.00
3049 3184 0.461870 TAGGCGCTGCACATTACAGG 60.462 55.000 7.64 0.00 35.62 4.00
3050 3185 0.933097 CTAGGCGCTGCACATTACAG 59.067 55.000 7.64 0.00 38.22 2.74
3051 3186 1.089481 GCTAGGCGCTGCACATTACA 61.089 55.000 7.64 0.00 35.14 2.41
3052 3187 1.643832 GCTAGGCGCTGCACATTAC 59.356 57.895 7.64 0.00 35.14 1.89
3053 3188 4.124910 GCTAGGCGCTGCACATTA 57.875 55.556 7.64 0.00 35.14 1.90
3069 3204 2.047274 TGTGTAGCGCCCAAGAGC 60.047 61.111 2.29 0.00 39.42 4.09
3070 3205 1.016130 CACTGTGTAGCGCCCAAGAG 61.016 60.000 2.29 0.00 0.00 2.85
3071 3206 1.005037 CACTGTGTAGCGCCCAAGA 60.005 57.895 2.29 0.00 0.00 3.02
3072 3207 1.005037 TCACTGTGTAGCGCCCAAG 60.005 57.895 2.29 4.75 0.00 3.61
3073 3208 1.301401 GTCACTGTGTAGCGCCCAA 60.301 57.895 2.29 0.00 0.00 4.12
3074 3209 1.754380 AAGTCACTGTGTAGCGCCCA 61.754 55.000 2.29 0.00 0.00 5.36
3075 3210 0.245539 TAAGTCACTGTGTAGCGCCC 59.754 55.000 2.29 0.00 0.00 6.13
3076 3211 1.993370 CTTAAGTCACTGTGTAGCGCC 59.007 52.381 2.29 0.00 0.00 6.53
3077 3212 1.390463 GCTTAAGTCACTGTGTAGCGC 59.610 52.381 7.79 0.00 0.00 5.92
3078 3213 1.649171 CGCTTAAGTCACTGTGTAGCG 59.351 52.381 19.74 19.74 42.96 4.26
3079 3214 1.390463 GCGCTTAAGTCACTGTGTAGC 59.610 52.381 7.79 8.99 0.00 3.58
3080 3215 1.649171 CGCGCTTAAGTCACTGTGTAG 59.351 52.381 5.56 0.93 0.00 2.74
3081 3216 1.667756 CCGCGCTTAAGTCACTGTGTA 60.668 52.381 5.56 0.00 0.00 2.90
3082 3217 0.944311 CCGCGCTTAAGTCACTGTGT 60.944 55.000 5.56 0.00 0.00 3.72
3083 3218 1.781555 CCGCGCTTAAGTCACTGTG 59.218 57.895 5.56 0.17 0.00 3.66
3084 3219 2.027625 GCCGCGCTTAAGTCACTGT 61.028 57.895 5.56 0.00 0.00 3.55
3085 3220 2.740714 GGCCGCGCTTAAGTCACTG 61.741 63.158 5.56 0.00 0.00 3.66
3086 3221 2.434359 GGCCGCGCTTAAGTCACT 60.434 61.111 5.56 0.00 0.00 3.41
3087 3222 3.849953 CGGCCGCGCTTAAGTCAC 61.850 66.667 14.67 0.00 0.00 3.67
3111 3246 1.376037 GAAGAACTGCCTGGTCGGG 60.376 63.158 0.00 0.00 37.49 5.14
3112 3247 1.738099 CGAAGAACTGCCTGGTCGG 60.738 63.158 0.00 0.00 37.49 4.79
3113 3248 1.006102 ACGAAGAACTGCCTGGTCG 60.006 57.895 0.00 0.00 37.49 4.79
3114 3249 0.318762 AGACGAAGAACTGCCTGGTC 59.681 55.000 0.00 0.00 0.00 4.02
3115 3250 0.318762 GAGACGAAGAACTGCCTGGT 59.681 55.000 0.00 0.00 0.00 4.00
3116 3251 0.605589 AGAGACGAAGAACTGCCTGG 59.394 55.000 0.00 0.00 0.00 4.45
3117 3252 1.403514 GGAGAGACGAAGAACTGCCTG 60.404 57.143 0.00 0.00 0.00 4.85
3118 3253 0.892063 GGAGAGACGAAGAACTGCCT 59.108 55.000 0.00 0.00 0.00 4.75
3119 3254 0.456995 CGGAGAGACGAAGAACTGCC 60.457 60.000 0.00 0.00 35.47 4.85
3120 3255 1.073768 GCGGAGAGACGAAGAACTGC 61.074 60.000 0.00 0.00 35.47 4.40
3121 3256 0.523966 AGCGGAGAGACGAAGAACTG 59.476 55.000 0.00 0.00 35.47 3.16
3122 3257 0.806241 GAGCGGAGAGACGAAGAACT 59.194 55.000 0.00 0.00 35.47 3.01
3123 3258 0.806241 AGAGCGGAGAGACGAAGAAC 59.194 55.000 0.00 0.00 35.47 3.01
3124 3259 3.251332 AGAGCGGAGAGACGAAGAA 57.749 52.632 0.00 0.00 35.47 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.