Multiple sequence alignment - TraesCS2A01G132600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G132600 chr2A 100.000 3936 0 0 1 3936 79444090 79440155 0.000000e+00 7269.0
1 TraesCS2A01G132600 chr2A 89.677 155 12 3 1131 1281 79541133 79540979 1.120000e-45 195.0
2 TraesCS2A01G132600 chr2A 80.070 286 32 15 1061 1331 79498147 79497872 5.190000e-44 189.0
3 TraesCS2A01G132600 chr2A 96.552 58 2 0 3613 3670 752459486 752459429 3.240000e-16 97.1
4 TraesCS2A01G132600 chr2D 91.504 3237 143 40 439 3602 79234736 79231559 0.000000e+00 4333.0
5 TraesCS2A01G132600 chr2D 89.591 269 13 11 3672 3934 79231559 79231300 1.050000e-85 327.0
6 TraesCS2A01G132600 chr2D 83.654 208 25 7 1061 1259 79332906 79332699 1.870000e-43 187.0
7 TraesCS2A01G132600 chr2D 91.803 61 5 0 1138 1198 79260105 79260045 7.010000e-13 86.1
8 TraesCS2A01G132600 chr2B 90.723 2878 155 40 1 2826 123103041 123100224 0.000000e+00 3733.0
9 TraesCS2A01G132600 chr2B 87.320 1041 90 17 1 1038 128260557 128259556 0.000000e+00 1153.0
10 TraesCS2A01G132600 chr2B 83.563 797 66 35 2840 3614 123100241 123099488 0.000000e+00 686.0
11 TraesCS2A01G132600 chr2B 87.866 239 22 5 3674 3912 123099503 123099272 1.390000e-69 274.0
12 TraesCS2A01G132600 chr2B 88.053 226 22 3 1063 1284 128312186 128311962 3.020000e-66 263.0
13 TraesCS2A01G132600 chr2B 86.184 152 11 5 1138 1281 123130270 123130121 5.270000e-34 156.0
14 TraesCS2A01G132600 chr1B 76.626 1061 178 59 1573 2586 20836132 20835095 4.510000e-144 521.0
15 TraesCS2A01G132600 chr1D 76.244 1065 181 58 1573 2586 15049761 15048718 2.110000e-137 499.0
16 TraesCS2A01G132600 chr1A 76.087 966 177 45 1651 2577 15517203 15518153 4.640000e-124 455.0
17 TraesCS2A01G132600 chr1A 96.667 60 2 0 3616 3675 51963418 51963477 2.500000e-17 100.0
18 TraesCS2A01G132600 chr7D 100.000 57 0 0 3614 3670 631085922 631085866 5.380000e-19 106.0
19 TraesCS2A01G132600 chr3A 94.203 69 3 1 3608 3675 13367745 13367677 1.930000e-18 104.0
20 TraesCS2A01G132600 chr3A 98.214 56 1 0 3615 3670 740388556 740388501 9.000000e-17 99.0
21 TraesCS2A01G132600 chr3A 96.552 58 2 0 3614 3671 39315469 39315526 3.240000e-16 97.1
22 TraesCS2A01G132600 chr3A 96.552 58 2 0 3614 3671 39332201 39332258 3.240000e-16 97.1
23 TraesCS2A01G132600 chr7A 96.491 57 2 0 3614 3670 14359343 14359287 1.160000e-15 95.3
24 TraesCS2A01G132600 chr7A 94.828 58 3 0 3608 3665 554406345 554406402 1.510000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G132600 chr2A 79440155 79444090 3935 True 7269.000000 7269 100.0000 1 3936 1 chr2A.!!$R1 3935
1 TraesCS2A01G132600 chr2D 79231300 79234736 3436 True 2330.000000 4333 90.5475 439 3934 2 chr2D.!!$R3 3495
2 TraesCS2A01G132600 chr2B 123099272 123103041 3769 True 1564.333333 3733 87.3840 1 3912 3 chr2B.!!$R4 3911
3 TraesCS2A01G132600 chr2B 128259556 128260557 1001 True 1153.000000 1153 87.3200 1 1038 1 chr2B.!!$R2 1037
4 TraesCS2A01G132600 chr1B 20835095 20836132 1037 True 521.000000 521 76.6260 1573 2586 1 chr1B.!!$R1 1013
5 TraesCS2A01G132600 chr1D 15048718 15049761 1043 True 499.000000 499 76.2440 1573 2586 1 chr1D.!!$R1 1013
6 TraesCS2A01G132600 chr1A 15517203 15518153 950 False 455.000000 455 76.0870 1651 2577 1 chr1A.!!$F1 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.034756 ATGTGACACTAGGCGCAACA 59.965 50.0 10.83 0.22 0.0 3.33 F
278 279 0.179070 TGTGACACTAGGCGCAACAA 60.179 50.0 10.83 0.00 0.0 2.83 F
280 281 0.391228 TGACACTAGGCGCAACAAGA 59.609 50.0 10.83 0.00 0.0 3.02 F
2126 2217 0.109086 CGAAGCTGGTGATCGTGTCT 60.109 55.0 0.00 0.00 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1133 1155 0.980231 ATGACAGCTCCTCCTGGTCC 60.980 60.000 0.00 0.00 37.16 4.46 R
1934 1980 3.311110 GGGTCCACGGTGAGCTCA 61.311 66.667 13.74 13.74 33.34 4.26 R
2507 2598 2.847234 TTGGTCACGTCCCAGCCT 60.847 61.111 3.85 0.00 32.49 4.58 R
3667 3834 0.169672 CCAAAGCAACGATCTGCCTG 59.830 55.000 3.46 2.40 43.73 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.278461 TGTCTATGTATACTTCTGCCTTCTC 57.722 40.000 4.17 0.00 0.00 2.87
46 47 8.218488 TGTCTATGTATACTTCTGCCTTCTCTA 58.782 37.037 4.17 0.00 0.00 2.43
56 57 6.668283 ACTTCTGCCTTCTCTATAGGTGTTTA 59.332 38.462 0.00 0.00 35.13 2.01
76 77 2.992817 TTTTGAGGGTGGTGGCGCAT 62.993 55.000 10.83 0.00 0.00 4.73
79 80 4.467084 AGGGTGGTGGCGCATACG 62.467 66.667 10.83 0.00 44.07 3.06
106 107 5.018809 AGGACACAAGATGCATATTTGGTT 58.981 37.500 21.05 11.33 0.00 3.67
107 108 6.186957 AGGACACAAGATGCATATTTGGTTA 58.813 36.000 21.05 0.00 0.00 2.85
109 110 7.342799 AGGACACAAGATGCATATTTGGTTATT 59.657 33.333 21.05 7.04 0.00 1.40
110 111 7.649306 GGACACAAGATGCATATTTGGTTATTC 59.351 37.037 21.05 12.20 0.00 1.75
112 113 8.752187 ACACAAGATGCATATTTGGTTATTCTT 58.248 29.630 21.05 6.65 0.00 2.52
187 188 6.089551 ACAAATATAGCATCTAACGCGACATC 59.910 38.462 15.93 0.00 0.00 3.06
204 205 3.620488 ACATCCGGTGCAACAAGATATT 58.380 40.909 0.98 0.00 39.98 1.28
205 206 3.627577 ACATCCGGTGCAACAAGATATTC 59.372 43.478 0.98 0.00 39.98 1.75
206 207 3.342377 TCCGGTGCAACAAGATATTCA 57.658 42.857 0.98 0.00 39.98 2.57
239 240 0.317436 GTGACAATCGGCGCAACAAA 60.317 50.000 10.83 0.00 0.00 2.83
266 267 6.161855 TGGGTCTATCATCTAATGTGACAC 57.838 41.667 0.00 0.00 33.65 3.67
267 268 5.899547 TGGGTCTATCATCTAATGTGACACT 59.100 40.000 7.20 0.00 33.92 3.55
268 269 7.066781 TGGGTCTATCATCTAATGTGACACTA 58.933 38.462 7.20 0.00 33.92 2.74
271 272 7.087639 GTCTATCATCTAATGTGACACTAGGC 58.912 42.308 7.20 0.00 0.00 3.93
272 273 4.307443 TCATCTAATGTGACACTAGGCG 57.693 45.455 7.20 0.00 0.00 5.52
273 274 2.579207 TCTAATGTGACACTAGGCGC 57.421 50.000 7.20 0.00 0.00 6.53
274 275 1.822371 TCTAATGTGACACTAGGCGCA 59.178 47.619 10.83 0.00 0.00 6.09
276 277 1.156736 AATGTGACACTAGGCGCAAC 58.843 50.000 10.83 0.00 0.00 4.17
277 278 0.034756 ATGTGACACTAGGCGCAACA 59.965 50.000 10.83 0.22 0.00 3.33
278 279 0.179070 TGTGACACTAGGCGCAACAA 60.179 50.000 10.83 0.00 0.00 2.83
279 280 0.512952 GTGACACTAGGCGCAACAAG 59.487 55.000 10.83 2.56 0.00 3.16
280 281 0.391228 TGACACTAGGCGCAACAAGA 59.609 50.000 10.83 0.00 0.00 3.02
281 282 1.001974 TGACACTAGGCGCAACAAGAT 59.998 47.619 10.83 0.00 0.00 2.40
282 283 2.232696 TGACACTAGGCGCAACAAGATA 59.767 45.455 10.83 0.00 0.00 1.98
283 284 3.118775 TGACACTAGGCGCAACAAGATAT 60.119 43.478 10.83 0.00 0.00 1.63
284 285 3.198068 ACACTAGGCGCAACAAGATATG 58.802 45.455 10.83 0.00 0.00 1.78
285 286 2.545526 CACTAGGCGCAACAAGATATGG 59.454 50.000 10.83 0.00 0.00 2.74
286 287 2.434336 ACTAGGCGCAACAAGATATGGA 59.566 45.455 10.83 0.00 0.00 3.41
287 288 2.645838 AGGCGCAACAAGATATGGAT 57.354 45.000 10.83 0.00 0.00 3.41
288 289 2.498167 AGGCGCAACAAGATATGGATC 58.502 47.619 10.83 0.00 0.00 3.36
289 290 2.105477 AGGCGCAACAAGATATGGATCT 59.895 45.455 10.83 0.00 44.79 2.75
290 291 3.324846 AGGCGCAACAAGATATGGATCTA 59.675 43.478 10.83 0.00 41.87 1.98
291 292 4.019860 AGGCGCAACAAGATATGGATCTAT 60.020 41.667 10.83 0.00 41.87 1.98
292 293 4.331168 GGCGCAACAAGATATGGATCTATC 59.669 45.833 10.83 0.00 41.87 2.08
293 294 4.931601 GCGCAACAAGATATGGATCTATCA 59.068 41.667 0.30 0.00 41.87 2.15
294 295 5.583854 GCGCAACAAGATATGGATCTATCAT 59.416 40.000 0.30 0.00 41.87 2.45
295 296 6.238049 GCGCAACAAGATATGGATCTATCATC 60.238 42.308 0.30 0.00 41.87 2.92
296 297 7.040494 CGCAACAAGATATGGATCTATCATCT 58.960 38.462 0.00 0.71 41.87 2.90
297 298 8.193438 CGCAACAAGATATGGATCTATCATCTA 58.807 37.037 0.00 0.00 41.87 1.98
298 299 9.881649 GCAACAAGATATGGATCTATCATCTAA 57.118 33.333 0.00 0.00 41.87 2.10
324 325 4.332543 TGACTTTAGGCGCAACAAGATATG 59.667 41.667 10.83 0.00 0.00 1.78
325 326 4.261801 ACTTTAGGCGCAACAAGATATGT 58.738 39.130 10.83 0.00 46.82 2.29
326 327 5.424757 ACTTTAGGCGCAACAAGATATGTA 58.575 37.500 10.83 0.00 42.99 2.29
327 328 6.055588 ACTTTAGGCGCAACAAGATATGTAT 58.944 36.000 10.83 0.00 42.99 2.29
328 329 5.922739 TTAGGCGCAACAAGATATGTATG 57.077 39.130 10.83 0.00 42.99 2.39
329 330 4.071961 AGGCGCAACAAGATATGTATGA 57.928 40.909 10.83 0.00 42.99 2.15
330 331 3.809832 AGGCGCAACAAGATATGTATGAC 59.190 43.478 10.83 0.00 42.99 3.06
331 332 3.362986 GGCGCAACAAGATATGTATGACG 60.363 47.826 10.83 0.00 42.99 4.35
332 333 3.245284 GCGCAACAAGATATGTATGACGT 59.755 43.478 0.30 0.00 42.99 4.34
347 348 8.988064 ATGTATGACGTATCTATCATCAAACC 57.012 34.615 0.00 0.00 36.87 3.27
373 374 1.869754 GCGTCACTCTGAAGTCTTGCA 60.870 52.381 0.00 0.00 31.71 4.08
381 382 4.883585 ACTCTGAAGTCTTGCATTTGTGAA 59.116 37.500 0.00 0.00 0.00 3.18
386 387 5.978919 TGAAGTCTTGCATTTGTGAATTGTC 59.021 36.000 0.00 0.00 0.00 3.18
389 390 4.919754 GTCTTGCATTTGTGAATTGTCTCC 59.080 41.667 0.00 0.00 0.00 3.71
394 395 4.501229 GCATTTGTGAATTGTCTCCAACCA 60.501 41.667 0.00 0.00 32.26 3.67
399 400 2.622942 TGAATTGTCTCCAACCAAGCAC 59.377 45.455 0.00 0.00 32.26 4.40
400 401 2.363306 ATTGTCTCCAACCAAGCACA 57.637 45.000 0.00 0.00 32.26 4.57
401 402 2.363306 TTGTCTCCAACCAAGCACAT 57.637 45.000 0.00 0.00 0.00 3.21
409 410 5.414454 TCTCCAACCAAGCACATTATACAAC 59.586 40.000 0.00 0.00 0.00 3.32
411 412 5.536538 TCCAACCAAGCACATTATACAACAA 59.463 36.000 0.00 0.00 0.00 2.83
416 417 8.348285 ACCAAGCACATTATACAACAAATACT 57.652 30.769 0.00 0.00 0.00 2.12
430 431 6.183360 ACAACAAATACTGATCTAATGCAGCC 60.183 38.462 0.00 0.00 35.57 4.85
434 435 3.659183 ACTGATCTAATGCAGCCCTTT 57.341 42.857 0.00 0.00 35.57 3.11
443 444 2.335712 GCAGCCCTTTAGCGCAACT 61.336 57.895 11.47 0.00 38.01 3.16
455 456 5.722021 TTAGCGCAACTAGATATGGATCA 57.278 39.130 11.47 0.00 34.17 2.92
483 484 1.006832 AACAACCATCGTCGCTATGC 58.993 50.000 0.00 0.00 0.00 3.14
485 486 0.578683 CAACCATCGTCGCTATGCTG 59.421 55.000 0.00 0.00 0.00 4.41
514 515 5.231991 GCATTTGTGAGTTGTTTCAAATCGT 59.768 36.000 5.68 0.00 38.08 3.73
518 519 4.202000 TGTGAGTTGTTTCAAATCGTGCAT 60.202 37.500 0.00 0.00 0.00 3.96
545 546 9.688091 GATATACCATCACAAGAGATAGACCTA 57.312 37.037 0.00 0.00 0.00 3.08
591 592 5.057819 TCTCCGTCACTCTAGATGTATCAC 58.942 45.833 0.00 0.00 0.00 3.06
595 596 4.319839 CGTCACTCTAGATGTATCACGCAT 60.320 45.833 0.00 0.00 0.00 4.73
597 598 4.580580 TCACTCTAGATGTATCACGCATGT 59.419 41.667 0.00 0.00 0.00 3.21
622 623 3.514645 GGCTACAAATCAAGCAATGTGG 58.485 45.455 0.00 0.00 40.61 4.17
624 625 3.614630 GCTACAAATCAAGCAATGTGGCA 60.615 43.478 8.00 0.00 45.88 4.92
662 663 3.391049 ACTCGCCTTTTCTGAGTTGTAC 58.609 45.455 0.00 0.00 39.87 2.90
676 677 2.821969 AGTTGTACCGGTGTCGAATAGT 59.178 45.455 19.93 0.00 39.00 2.12
679 680 2.162208 TGTACCGGTGTCGAATAGTGAC 59.838 50.000 19.93 2.66 39.00 3.67
710 711 3.064207 TGGAAGCGTTGTGTCTGAATAC 58.936 45.455 0.00 0.00 0.00 1.89
738 745 6.367149 GGCTGGCTTTAATTTTGAGAGAAAAG 59.633 38.462 0.00 0.00 0.00 2.27
742 749 7.926018 TGGCTTTAATTTTGAGAGAAAAGGAAC 59.074 33.333 0.00 0.00 0.00 3.62
751 758 3.991121 GAGAGAAAAGGAACGTGAGAAGG 59.009 47.826 0.00 0.00 0.00 3.46
759 766 2.067013 GAACGTGAGAAGGTAAGTGCC 58.933 52.381 0.00 0.00 0.00 5.01
849 856 2.190161 CATTGATGCTCCGTTGCAATG 58.810 47.619 11.90 11.90 46.61 2.82
851 858 1.089112 TGATGCTCCGTTGCAATGAG 58.911 50.000 20.36 19.72 46.61 2.90
856 863 1.363744 CTCCGTTGCAATGAGAGGAC 58.636 55.000 20.36 0.00 0.00 3.85
873 881 3.500343 AGGACCCCACAATTTTCTTCAG 58.500 45.455 0.00 0.00 0.00 3.02
1038 1053 3.591527 AGAACCTTCTCTCTCCTCTCTCA 59.408 47.826 0.00 0.00 29.94 3.27
1040 1055 2.647299 ACCTTCTCTCTCCTCTCTCACA 59.353 50.000 0.00 0.00 0.00 3.58
1041 1056 3.075283 ACCTTCTCTCTCCTCTCTCACAA 59.925 47.826 0.00 0.00 0.00 3.33
1042 1057 3.443681 CCTTCTCTCTCCTCTCTCACAAC 59.556 52.174 0.00 0.00 0.00 3.32
1043 1058 4.335416 CTTCTCTCTCCTCTCTCACAACT 58.665 47.826 0.00 0.00 0.00 3.16
1133 1155 3.702048 TTCGACAAGGGGGAGCCG 61.702 66.667 0.00 0.00 0.00 5.52
1538 1569 3.753434 CAGCTCGTGTCCTCCGCT 61.753 66.667 0.00 0.00 0.00 5.52
1622 1659 4.129737 ACCATCGACGAGGTGCGG 62.130 66.667 15.33 7.95 46.49 5.69
1760 1806 0.611062 TCCTCCCGATGTTCGTGACT 60.611 55.000 0.00 0.00 38.40 3.41
2126 2217 0.109086 CGAAGCTGGTGATCGTGTCT 60.109 55.000 0.00 0.00 0.00 3.41
2165 2256 0.745128 TCGAGAACGAGGAGGAGCTC 60.745 60.000 4.71 4.71 43.81 4.09
2651 2742 1.269569 CCGAAAACCAAACCTCTTGCC 60.270 52.381 0.00 0.00 0.00 4.52
2654 2745 3.254657 CGAAAACCAAACCTCTTGCCATA 59.745 43.478 0.00 0.00 0.00 2.74
2656 2747 4.806640 AAACCAAACCTCTTGCCATATG 57.193 40.909 0.00 0.00 0.00 1.78
2657 2748 3.737559 ACCAAACCTCTTGCCATATGA 57.262 42.857 3.65 0.00 0.00 2.15
2658 2749 4.255510 ACCAAACCTCTTGCCATATGAT 57.744 40.909 3.65 0.00 0.00 2.45
2659 2750 4.210331 ACCAAACCTCTTGCCATATGATC 58.790 43.478 3.65 0.00 0.00 2.92
2694 2785 8.902540 ATATAATCATCTCCGTTAGCAAACAA 57.097 30.769 0.00 0.00 35.16 2.83
2695 2786 5.957842 AATCATCTCCGTTAGCAAACAAA 57.042 34.783 0.00 0.00 35.16 2.83
2696 2787 4.742438 TCATCTCCGTTAGCAAACAAAC 57.258 40.909 0.00 0.00 35.16 2.93
2697 2788 4.130857 TCATCTCCGTTAGCAAACAAACA 58.869 39.130 0.00 0.00 35.16 2.83
2713 2804 4.690122 ACAAACATCCCGTATAGCAGTAC 58.310 43.478 0.00 0.00 0.00 2.73
2750 2842 5.470047 TTTACAGACACCTTTCTCCTCTC 57.530 43.478 0.00 0.00 0.00 3.20
2756 2848 2.381961 ACACCTTTCTCCTCTCCTCTCT 59.618 50.000 0.00 0.00 0.00 3.10
2761 2853 4.344104 CTTTCTCCTCTCCTCTCTGTTCT 58.656 47.826 0.00 0.00 0.00 3.01
2781 2873 4.295870 TCTTGTCAGTTACAGTTACAGCG 58.704 43.478 0.00 0.00 39.87 5.18
2789 2881 2.365408 ACAGTTACAGCGGCTAACTC 57.635 50.000 13.76 1.63 33.05 3.01
2813 2905 6.896860 TCCATACCTGACCATTCATTTCATTT 59.103 34.615 0.00 0.00 0.00 2.32
2814 2906 8.058235 TCCATACCTGACCATTCATTTCATTTA 58.942 33.333 0.00 0.00 0.00 1.40
2815 2907 8.355169 CCATACCTGACCATTCATTTCATTTAG 58.645 37.037 0.00 0.00 0.00 1.85
2816 2908 9.123902 CATACCTGACCATTCATTTCATTTAGA 57.876 33.333 0.00 0.00 0.00 2.10
2817 2909 9.872684 ATACCTGACCATTCATTTCATTTAGAT 57.127 29.630 0.00 0.00 0.00 1.98
2818 2910 8.599624 ACCTGACCATTCATTTCATTTAGATT 57.400 30.769 0.00 0.00 0.00 2.40
2819 2911 8.472413 ACCTGACCATTCATTTCATTTAGATTG 58.528 33.333 0.00 0.00 0.00 2.67
2820 2912 8.472413 CCTGACCATTCATTTCATTTAGATTGT 58.528 33.333 0.00 0.00 0.00 2.71
2821 2913 9.865321 CTGACCATTCATTTCATTTAGATTGTT 57.135 29.630 0.00 0.00 0.00 2.83
2829 2921 9.098355 TCATTTCATTTAGATTGTTACTCTCCG 57.902 33.333 0.00 0.00 0.00 4.63
2830 2922 8.883731 CATTTCATTTAGATTGTTACTCTCCGT 58.116 33.333 0.00 0.00 0.00 4.69
2831 2923 8.842358 TTTCATTTAGATTGTTACTCTCCGTT 57.158 30.769 0.00 0.00 0.00 4.44
2832 2924 8.842358 TTCATTTAGATTGTTACTCTCCGTTT 57.158 30.769 0.00 0.00 0.00 3.60
2833 2925 8.842358 TCATTTAGATTGTTACTCTCCGTTTT 57.158 30.769 0.00 0.00 0.00 2.43
2834 2926 8.717821 TCATTTAGATTGTTACTCTCCGTTTTG 58.282 33.333 0.00 0.00 0.00 2.44
2835 2927 8.717821 CATTTAGATTGTTACTCTCCGTTTTGA 58.282 33.333 0.00 0.00 0.00 2.69
2836 2928 7.647907 TTAGATTGTTACTCTCCGTTTTGAC 57.352 36.000 0.00 0.00 0.00 3.18
2837 2929 4.684703 AGATTGTTACTCTCCGTTTTGACG 59.315 41.667 0.00 0.00 0.00 4.35
2838 2930 2.129607 TGTTACTCTCCGTTTTGACGC 58.870 47.619 0.00 0.00 0.00 5.19
2839 2931 2.223876 TGTTACTCTCCGTTTTGACGCT 60.224 45.455 0.00 0.00 0.00 5.07
2840 2932 2.798847 GTTACTCTCCGTTTTGACGCTT 59.201 45.455 0.00 0.00 0.00 4.68
2841 2933 1.499049 ACTCTCCGTTTTGACGCTTC 58.501 50.000 0.00 0.00 0.00 3.86
2842 2934 1.202486 ACTCTCCGTTTTGACGCTTCA 60.202 47.619 0.00 0.00 0.00 3.02
2843 2935 2.069273 CTCTCCGTTTTGACGCTTCAT 58.931 47.619 0.00 0.00 0.00 2.57
2844 2936 2.480419 CTCTCCGTTTTGACGCTTCATT 59.520 45.455 0.00 0.00 0.00 2.57
2891 3014 1.734477 CCCGTGATCGATCGATGCC 60.734 63.158 33.86 20.72 39.71 4.40
2969 3103 3.678056 ACAATTTAGCGTCCTGACAGA 57.322 42.857 3.32 0.00 0.00 3.41
2970 3104 3.326747 ACAATTTAGCGTCCTGACAGAC 58.673 45.455 3.32 0.00 0.00 3.51
2973 3107 1.617322 TTAGCGTCCTGACAGACAGT 58.383 50.000 3.32 0.00 44.40 3.55
2974 3108 0.881796 TAGCGTCCTGACAGACAGTG 59.118 55.000 3.32 0.00 44.40 3.66
2975 3109 0.823769 AGCGTCCTGACAGACAGTGA 60.824 55.000 3.32 0.00 44.40 3.41
2976 3110 0.244994 GCGTCCTGACAGACAGTGAT 59.755 55.000 3.32 0.00 44.40 3.06
2977 3111 1.734047 GCGTCCTGACAGACAGTGATC 60.734 57.143 3.32 0.00 44.40 2.92
2982 3116 1.546029 CTGACAGACAGTGATCCGGAA 59.454 52.381 9.01 0.00 41.30 4.30
2983 3117 1.272490 TGACAGACAGTGATCCGGAAC 59.728 52.381 9.01 6.48 0.00 3.62
2999 3133 1.160137 GAACAAGATTCCTGCGTGCT 58.840 50.000 0.00 0.00 0.00 4.40
3000 3134 0.877071 AACAAGATTCCTGCGTGCTG 59.123 50.000 0.00 0.00 0.00 4.41
3079 3217 1.597854 TGAACCGCCTCTGCTGTTG 60.598 57.895 0.00 0.00 43.76 3.33
3084 3222 4.395583 GCCTCTGCTGTTGCGCAC 62.396 66.667 11.12 6.28 43.34 5.34
3085 3223 2.974148 CCTCTGCTGTTGCGCACA 60.974 61.111 11.12 11.23 43.34 4.57
3086 3224 2.250485 CTCTGCTGTTGCGCACAC 59.750 61.111 11.12 12.73 43.34 3.82
3087 3225 2.513435 TCTGCTGTTGCGCACACA 60.513 55.556 11.12 16.82 43.34 3.72
3088 3226 2.352686 CTGCTGTTGCGCACACAC 60.353 61.111 11.12 6.69 43.34 3.82
3089 3227 3.110868 CTGCTGTTGCGCACACACA 62.111 57.895 11.12 11.98 43.34 3.72
3090 3228 2.352686 GCTGTTGCGCACACACAG 60.353 61.111 28.24 28.24 37.67 3.66
3097 3235 2.325511 CGCACACACAGCACACAG 59.674 61.111 0.00 0.00 0.00 3.66
3201 3368 4.228899 TCGACCATCGATCGTCCA 57.771 55.556 16.17 1.98 44.82 4.02
3202 3369 2.715536 TCGACCATCGATCGTCCAT 58.284 52.632 16.17 0.00 44.82 3.41
3203 3370 0.310854 TCGACCATCGATCGTCCATG 59.689 55.000 16.17 11.39 44.82 3.66
3220 3387 1.270274 CATGGATGTGGTGTGGTTGTG 59.730 52.381 0.00 0.00 0.00 3.33
3247 3414 2.870175 TGGGTTGGTTGGAACATACTG 58.130 47.619 0.00 0.00 39.30 2.74
3276 3443 3.628053 TCGTTAAGCGTCAATAAAGCG 57.372 42.857 0.00 0.00 42.13 4.68
3301 3468 6.182507 TGATAATTAGTGGGCCGATAAAGT 57.817 37.500 0.00 0.00 0.00 2.66
3304 3471 8.380099 TGATAATTAGTGGGCCGATAAAGTTAT 58.620 33.333 0.00 3.07 0.00 1.89
3362 3529 2.393768 GCATCCAGAGGTGCGTGTG 61.394 63.158 0.00 0.00 0.00 3.82
3402 3569 2.462456 TTTCTACTGCTGCCACTGAG 57.538 50.000 0.00 0.00 0.00 3.35
3404 3571 0.542938 TCTACTGCTGCCACTGAGGT 60.543 55.000 0.00 0.00 40.61 3.85
3405 3572 0.390866 CTACTGCTGCCACTGAGGTG 60.391 60.000 0.00 0.00 42.65 4.00
3406 3573 0.831711 TACTGCTGCCACTGAGGTGA 60.832 55.000 0.00 0.00 45.61 4.02
3407 3574 1.071987 CTGCTGCCACTGAGGTGAA 59.928 57.895 0.00 0.00 45.61 3.18
3408 3575 0.954449 CTGCTGCCACTGAGGTGAAG 60.954 60.000 0.00 0.00 45.61 3.02
3409 3576 1.673665 GCTGCCACTGAGGTGAAGG 60.674 63.158 0.00 0.00 45.61 3.46
3410 3577 2.061220 CTGCCACTGAGGTGAAGGA 58.939 57.895 0.00 0.00 45.61 3.36
3411 3578 0.617413 CTGCCACTGAGGTGAAGGAT 59.383 55.000 0.00 0.00 45.61 3.24
3412 3579 0.325933 TGCCACTGAGGTGAAGGATG 59.674 55.000 0.00 0.00 45.61 3.51
3425 3592 3.101437 TGAAGGATGGAACGGCTAGTTA 58.899 45.455 0.00 0.00 44.35 2.24
3436 3603 4.010667 ACGGCTAGTTATTGTTGTGGAA 57.989 40.909 0.00 0.00 0.00 3.53
3447 3614 3.213206 TGTTGTGGAAAGCAGAGTCAT 57.787 42.857 0.00 0.00 0.00 3.06
3448 3615 2.880268 TGTTGTGGAAAGCAGAGTCATG 59.120 45.455 0.00 0.00 0.00 3.07
3461 3628 4.801891 CAGAGTCATGGGTCAATTGTTTG 58.198 43.478 5.13 0.00 0.00 2.93
3482 3649 6.817765 TTGAGTGGGAAGCTATTTTACTTG 57.182 37.500 0.00 0.00 0.00 3.16
3507 3674 1.970114 CAGGCCAGTCACTGCCTTG 60.970 63.158 15.77 0.73 36.43 3.61
3521 3688 1.090728 GCCTTGCCTAGAAGCACTTC 58.909 55.000 2.04 2.04 43.97 3.01
3544 3711 5.632347 TCAAAAAGAAGAGATCCGTTCGTAC 59.368 40.000 0.00 0.00 0.00 3.67
3545 3712 5.388408 AAAAGAAGAGATCCGTTCGTACT 57.612 39.130 0.00 0.00 0.00 2.73
3546 3713 4.358494 AAGAAGAGATCCGTTCGTACTG 57.642 45.455 0.00 0.00 0.00 2.74
3602 3769 1.012998 CGATGCACACGCTTGATCG 60.013 57.895 0.00 0.00 39.64 3.69
3603 3770 1.686566 CGATGCACACGCTTGATCGT 61.687 55.000 0.00 0.00 44.35 3.73
3604 3771 0.443869 GATGCACACGCTTGATCGTT 59.556 50.000 0.00 0.00 41.21 3.85
3605 3772 0.166597 ATGCACACGCTTGATCGTTG 59.833 50.000 0.00 0.00 41.21 4.10
3606 3773 1.793613 GCACACGCTTGATCGTTGC 60.794 57.895 0.00 0.00 41.21 4.17
3607 3774 1.862123 CACACGCTTGATCGTTGCT 59.138 52.632 0.00 0.00 41.21 3.91
3608 3775 0.235665 CACACGCTTGATCGTTGCTT 59.764 50.000 0.00 0.00 41.21 3.91
3609 3776 0.944386 ACACGCTTGATCGTTGCTTT 59.056 45.000 0.00 0.00 41.21 3.51
3610 3777 1.321016 CACGCTTGATCGTTGCTTTG 58.679 50.000 0.00 0.00 41.21 2.77
3611 3778 0.238289 ACGCTTGATCGTTGCTTTGG 59.762 50.000 3.57 0.00 40.07 3.28
3612 3779 0.238289 CGCTTGATCGTTGCTTTGGT 59.762 50.000 3.57 0.00 0.00 3.67
3613 3780 1.334960 CGCTTGATCGTTGCTTTGGTT 60.335 47.619 3.57 0.00 0.00 3.67
3614 3781 2.742774 GCTTGATCGTTGCTTTGGTTT 58.257 42.857 0.00 0.00 0.00 3.27
3615 3782 3.123050 GCTTGATCGTTGCTTTGGTTTT 58.877 40.909 0.00 0.00 0.00 2.43
3616 3783 3.555547 GCTTGATCGTTGCTTTGGTTTTT 59.444 39.130 0.00 0.00 0.00 1.94
3652 3819 3.739401 AGGTTTCCCTCCGATTTCATT 57.261 42.857 0.00 0.00 35.62 2.57
3653 3820 4.855298 AGGTTTCCCTCCGATTTCATTA 57.145 40.909 0.00 0.00 35.62 1.90
3654 3821 5.187621 AGGTTTCCCTCCGATTTCATTAA 57.812 39.130 0.00 0.00 35.62 1.40
3655 3822 4.948004 AGGTTTCCCTCCGATTTCATTAAC 59.052 41.667 0.00 0.00 35.62 2.01
3656 3823 4.201881 GGTTTCCCTCCGATTTCATTAACG 60.202 45.833 0.00 0.00 0.00 3.18
3657 3824 4.475051 TTCCCTCCGATTTCATTAACGA 57.525 40.909 0.00 0.00 0.00 3.85
3658 3825 4.475051 TCCCTCCGATTTCATTAACGAA 57.525 40.909 0.00 0.00 0.00 3.85
3659 3826 4.834534 TCCCTCCGATTTCATTAACGAAA 58.165 39.130 0.00 0.00 39.13 3.46
3660 3827 4.632688 TCCCTCCGATTTCATTAACGAAAC 59.367 41.667 0.00 0.00 37.69 2.78
3661 3828 4.201881 CCCTCCGATTTCATTAACGAAACC 60.202 45.833 0.00 0.00 37.69 3.27
3662 3829 4.393680 CCTCCGATTTCATTAACGAAACCA 59.606 41.667 0.00 0.00 37.69 3.67
3663 3830 5.106475 CCTCCGATTTCATTAACGAAACCAA 60.106 40.000 0.00 0.00 37.69 3.67
3664 3831 6.315091 TCCGATTTCATTAACGAAACCAAA 57.685 33.333 0.00 0.00 37.69 3.28
3665 3832 6.736123 TCCGATTTCATTAACGAAACCAAAA 58.264 32.000 0.00 0.00 37.69 2.44
3666 3833 6.858993 TCCGATTTCATTAACGAAACCAAAAG 59.141 34.615 0.00 0.00 37.69 2.27
3667 3834 6.399564 CCGATTTCATTAACGAAACCAAAAGC 60.400 38.462 0.00 0.00 37.69 3.51
3668 3835 6.143118 CGATTTCATTAACGAAACCAAAAGCA 59.857 34.615 0.00 0.00 37.69 3.91
3669 3836 6.820470 TTTCATTAACGAAACCAAAAGCAG 57.180 33.333 0.00 0.00 30.00 4.24
3670 3837 4.865776 TCATTAACGAAACCAAAAGCAGG 58.134 39.130 0.00 0.00 0.00 4.85
3671 3838 2.785713 TAACGAAACCAAAAGCAGGC 57.214 45.000 0.00 0.00 0.00 4.85
3680 3847 1.401931 CCAAAAGCAGGCAGATCGTTG 60.402 52.381 0.00 0.00 0.00 4.10
3694 3861 1.943693 CGTTGCTTTGGTTGCACGG 60.944 57.895 0.00 0.00 40.40 4.94
3715 3882 5.221303 ACGGCAGTGAGTAAAAACAGTACTA 60.221 40.000 0.00 0.00 31.88 1.82
3716 3883 5.345202 CGGCAGTGAGTAAAAACAGTACTAG 59.655 44.000 0.00 0.00 31.88 2.57
3717 3884 6.221659 GGCAGTGAGTAAAAACAGTACTAGT 58.778 40.000 0.00 0.00 31.88 2.57
3728 3895 8.599055 AAAAACAGTACTAGTTACTTACTGGC 57.401 34.615 21.24 0.00 44.71 4.85
3733 3900 7.015001 ACAGTACTAGTTACTTACTGGCTTTGT 59.985 37.037 21.24 4.73 44.71 2.83
3742 3909 4.762251 ACTTACTGGCTTTGTCTTGGATTC 59.238 41.667 0.00 0.00 0.00 2.52
3756 3923 1.003580 TGGATTCGAAGAAGCAAGGCT 59.996 47.619 3.35 0.00 45.90 4.58
3757 3924 1.399791 GGATTCGAAGAAGCAAGGCTG 59.600 52.381 3.35 0.00 45.90 4.85
3758 3925 2.350522 GATTCGAAGAAGCAAGGCTGA 58.649 47.619 3.35 0.00 45.90 4.26
3759 3926 2.479566 TTCGAAGAAGCAAGGCTGAT 57.520 45.000 0.00 0.00 45.90 2.90
3760 3927 1.730501 TCGAAGAAGCAAGGCTGATG 58.269 50.000 0.00 0.00 39.62 3.07
3775 3942 2.648059 CTGATGGATGGTTCCTTCCAC 58.352 52.381 22.86 17.64 42.75 4.02
3776 3943 1.991813 TGATGGATGGTTCCTTCCACA 59.008 47.619 22.86 19.30 42.75 4.17
3792 3959 1.472082 CCACAACACACACACACACAT 59.528 47.619 0.00 0.00 0.00 3.21
3793 3960 2.517935 CACAACACACACACACACATG 58.482 47.619 0.00 0.00 0.00 3.21
3805 3976 3.066621 ACACACACATGACACATTTGGTC 59.933 43.478 0.00 0.00 35.83 4.02
3806 3977 2.622942 ACACACATGACACATTTGGTCC 59.377 45.455 0.00 0.00 34.36 4.46
3840 4011 3.547413 GGTTGCGTGTCAGTAAAAACCTC 60.547 47.826 0.00 0.00 34.18 3.85
3921 4095 3.243501 ACAGCTCAAATCATTTTGCGTGT 60.244 39.130 0.00 3.27 41.66 4.49
3922 4096 4.023279 ACAGCTCAAATCATTTTGCGTGTA 60.023 37.500 0.00 0.00 41.66 2.90
3923 4097 4.321745 CAGCTCAAATCATTTTGCGTGTAC 59.678 41.667 0.00 0.00 41.66 2.90
3934 4108 2.768833 TGCGTGTACTATTAGCGGAG 57.231 50.000 0.00 0.00 0.00 4.63
3935 4109 2.019249 TGCGTGTACTATTAGCGGAGT 58.981 47.619 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.067008 CACCACCCTCAAAATAAACACCTATAG 59.933 40.741 0.00 0.00 0.00 1.31
46 47 5.714806 CACCACCCTCAAAATAAACACCTAT 59.285 40.000 0.00 0.00 0.00 2.57
56 57 2.275380 GCGCCACCACCCTCAAAAT 61.275 57.895 0.00 0.00 0.00 1.82
76 77 2.560981 TGCATCTTGTGTCCTTCTCGTA 59.439 45.455 0.00 0.00 0.00 3.43
79 80 6.459298 CCAAATATGCATCTTGTGTCCTTCTC 60.459 42.308 0.19 0.00 0.00 2.87
167 168 3.425758 CGGATGTCGCGTTAGATGCTATA 60.426 47.826 5.77 0.00 0.00 1.31
168 169 2.668556 CGGATGTCGCGTTAGATGCTAT 60.669 50.000 5.77 0.00 0.00 2.97
187 188 3.879295 AGATGAATATCTTGTTGCACCGG 59.121 43.478 0.00 0.00 40.79 5.28
204 205 7.653311 CCGATTGTCACATTAGTTGATAGATGA 59.347 37.037 0.00 0.00 0.00 2.92
205 206 7.570140 GCCGATTGTCACATTAGTTGATAGATG 60.570 40.741 0.00 0.00 0.00 2.90
206 207 6.425114 GCCGATTGTCACATTAGTTGATAGAT 59.575 38.462 0.00 0.00 0.00 1.98
221 222 0.382158 TTTTGTTGCGCCGATTGTCA 59.618 45.000 4.18 0.00 0.00 3.58
226 227 1.066908 CCCATATTTTGTTGCGCCGAT 59.933 47.619 4.18 0.00 0.00 4.18
239 240 9.104713 TGTCACATTAGATGATAGACCCATATT 57.895 33.333 0.00 0.00 33.02 1.28
261 262 0.391228 TCTTGTTGCGCCTAGTGTCA 59.609 50.000 4.18 0.00 0.00 3.58
266 267 3.111853 TCCATATCTTGTTGCGCCTAG 57.888 47.619 4.18 0.00 0.00 3.02
267 268 3.324846 AGATCCATATCTTGTTGCGCCTA 59.675 43.478 4.18 0.00 39.55 3.93
268 269 2.105477 AGATCCATATCTTGTTGCGCCT 59.895 45.455 4.18 0.00 39.55 5.52
271 272 7.040494 AGATGATAGATCCATATCTTGTTGCG 58.960 38.462 4.22 0.00 39.55 4.85
272 273 9.881649 TTAGATGATAGATCCATATCTTGTTGC 57.118 33.333 0.00 0.00 39.55 4.17
276 277 9.513727 CACGTTAGATGATAGATCCATATCTTG 57.486 37.037 0.00 0.00 39.55 3.02
277 278 9.467796 TCACGTTAGATGATAGATCCATATCTT 57.532 33.333 0.00 0.00 39.55 2.40
278 279 8.898761 GTCACGTTAGATGATAGATCCATATCT 58.101 37.037 0.00 0.00 44.80 1.98
279 280 8.898761 AGTCACGTTAGATGATAGATCCATATC 58.101 37.037 0.00 0.00 33.53 1.63
280 281 8.815565 AGTCACGTTAGATGATAGATCCATAT 57.184 34.615 0.00 0.00 0.00 1.78
281 282 8.637196 AAGTCACGTTAGATGATAGATCCATA 57.363 34.615 0.00 0.00 0.00 2.74
282 283 7.531857 AAGTCACGTTAGATGATAGATCCAT 57.468 36.000 0.00 0.00 0.00 3.41
283 284 6.961360 AAGTCACGTTAGATGATAGATCCA 57.039 37.500 0.00 0.00 0.00 3.41
284 285 8.024285 CCTAAAGTCACGTTAGATGATAGATCC 58.976 40.741 11.68 0.00 31.37 3.36
285 286 7.539366 GCCTAAAGTCACGTTAGATGATAGATC 59.461 40.741 11.68 0.00 31.37 2.75
286 287 7.371936 GCCTAAAGTCACGTTAGATGATAGAT 58.628 38.462 11.68 0.00 31.37 1.98
287 288 6.512903 CGCCTAAAGTCACGTTAGATGATAGA 60.513 42.308 11.68 0.00 31.37 1.98
288 289 5.625721 CGCCTAAAGTCACGTTAGATGATAG 59.374 44.000 11.68 0.00 31.37 2.08
289 290 5.516996 CGCCTAAAGTCACGTTAGATGATA 58.483 41.667 11.68 0.00 31.37 2.15
290 291 4.360563 CGCCTAAAGTCACGTTAGATGAT 58.639 43.478 11.68 0.00 31.37 2.45
291 292 3.766151 CGCCTAAAGTCACGTTAGATGA 58.234 45.455 11.68 0.00 31.37 2.92
292 293 2.281762 GCGCCTAAAGTCACGTTAGATG 59.718 50.000 11.68 5.14 31.37 2.90
293 294 2.094390 TGCGCCTAAAGTCACGTTAGAT 60.094 45.455 11.68 0.00 31.37 1.98
294 295 1.270274 TGCGCCTAAAGTCACGTTAGA 59.730 47.619 11.68 0.00 31.37 2.10
295 296 1.705256 TGCGCCTAAAGTCACGTTAG 58.295 50.000 4.18 3.65 0.00 2.34
296 297 1.794116 GTTGCGCCTAAAGTCACGTTA 59.206 47.619 4.18 0.00 0.00 3.18
297 298 0.584876 GTTGCGCCTAAAGTCACGTT 59.415 50.000 4.18 0.00 0.00 3.99
298 299 0.531090 TGTTGCGCCTAAAGTCACGT 60.531 50.000 4.18 0.00 0.00 4.49
299 300 0.584396 TTGTTGCGCCTAAAGTCACG 59.416 50.000 4.18 0.00 0.00 4.35
324 325 8.700644 GTTGGTTTGATGATAGATACGTCATAC 58.299 37.037 0.00 0.00 35.33 2.39
325 326 8.638873 AGTTGGTTTGATGATAGATACGTCATA 58.361 33.333 0.00 0.00 35.33 2.15
326 327 7.500992 AGTTGGTTTGATGATAGATACGTCAT 58.499 34.615 0.00 0.00 37.76 3.06
327 328 6.873997 AGTTGGTTTGATGATAGATACGTCA 58.126 36.000 0.00 0.00 0.00 4.35
328 329 7.115095 GCTAGTTGGTTTGATGATAGATACGTC 59.885 40.741 0.00 0.00 0.00 4.34
329 330 6.924060 GCTAGTTGGTTTGATGATAGATACGT 59.076 38.462 0.00 0.00 0.00 3.57
330 331 6.088217 CGCTAGTTGGTTTGATGATAGATACG 59.912 42.308 0.00 0.00 0.00 3.06
331 332 6.924060 ACGCTAGTTGGTTTGATGATAGATAC 59.076 38.462 0.00 0.00 0.00 2.24
332 333 7.050970 ACGCTAGTTGGTTTGATGATAGATA 57.949 36.000 0.00 0.00 0.00 1.98
338 339 3.064207 GTGACGCTAGTTGGTTTGATGA 58.936 45.455 0.00 0.00 0.00 2.92
343 344 2.364324 TCAGAGTGACGCTAGTTGGTTT 59.636 45.455 0.00 0.00 0.00 3.27
347 348 3.057876 AGACTTCAGAGTGACGCTAGTTG 60.058 47.826 0.00 0.00 35.88 3.16
386 387 5.182950 TGTTGTATAATGTGCTTGGTTGGAG 59.817 40.000 0.00 0.00 0.00 3.86
389 390 7.887996 ATTTGTTGTATAATGTGCTTGGTTG 57.112 32.000 0.00 0.00 0.00 3.77
409 410 5.068636 AGGGCTGCATTAGATCAGTATTTG 58.931 41.667 0.50 0.00 33.09 2.32
411 412 4.989875 AGGGCTGCATTAGATCAGTATT 57.010 40.909 0.50 0.00 33.09 1.89
416 417 3.480470 GCTAAAGGGCTGCATTAGATCA 58.520 45.455 17.65 0.00 0.00 2.92
430 431 4.883083 TCCATATCTAGTTGCGCTAAAGG 58.117 43.478 9.73 0.00 0.00 3.11
434 435 5.470368 GTTGATCCATATCTAGTTGCGCTA 58.530 41.667 9.73 0.00 32.93 4.26
455 456 3.187637 CGACGATGGTTGTTTGTATGGTT 59.812 43.478 0.00 0.00 0.00 3.67
461 462 2.157834 TAGCGACGATGGTTGTTTGT 57.842 45.000 0.00 0.00 0.00 2.83
464 465 1.006832 GCATAGCGACGATGGTTGTT 58.993 50.000 0.00 0.00 0.00 2.83
470 471 1.520174 CAAGACAGCATAGCGACGATG 59.480 52.381 0.00 0.00 0.00 3.84
483 484 4.297299 ACAACTCACAAATGCAAGACAG 57.703 40.909 0.00 0.00 0.00 3.51
485 486 5.101628 TGAAACAACTCACAAATGCAAGAC 58.898 37.500 0.00 0.00 0.00 3.01
514 515 6.423776 TCTCTTGTGATGGTATATCATGCA 57.576 37.500 2.38 0.00 0.00 3.96
518 519 8.173412 AGGTCTATCTCTTGTGATGGTATATCA 58.827 37.037 0.00 0.00 0.00 2.15
545 546 7.263496 AGAATAGTCGTTTAGATAAAGCGGTT 58.737 34.615 0.00 0.00 0.00 4.44
595 596 2.006888 GCTTGATTTGTAGCCGCTACA 58.993 47.619 26.06 26.06 44.00 2.74
597 598 2.394930 TGCTTGATTTGTAGCCGCTA 57.605 45.000 0.00 0.00 0.00 4.26
622 623 0.949105 TCTTCTCGCTTTTCCCGTGC 60.949 55.000 0.00 0.00 0.00 5.34
624 625 0.680061 AGTCTTCTCGCTTTTCCCGT 59.320 50.000 0.00 0.00 0.00 5.28
662 663 0.524816 CCGTCACTATTCGACACCGG 60.525 60.000 0.00 0.00 36.24 5.28
676 677 1.138036 CTTCCATCGTACGCCGTCA 59.862 57.895 11.24 0.00 37.94 4.35
679 680 3.320078 CGCTTCCATCGTACGCCG 61.320 66.667 11.24 3.41 38.13 6.46
710 711 5.075858 TCTCAAAATTAAAGCCAGCCATG 57.924 39.130 0.00 0.00 0.00 3.66
738 745 2.067013 GCACTTACCTTCTCACGTTCC 58.933 52.381 0.00 0.00 0.00 3.62
742 749 0.320374 TGGGCACTTACCTTCTCACG 59.680 55.000 0.00 0.00 0.00 4.35
751 758 7.319646 TGTCAAAATCATAAATGGGCACTTAC 58.680 34.615 0.00 0.00 0.00 2.34
849 856 3.441500 AGAAAATTGTGGGGTCCTCTC 57.558 47.619 0.00 0.00 0.00 3.20
851 858 3.496331 TGAAGAAAATTGTGGGGTCCTC 58.504 45.455 0.00 0.00 0.00 3.71
856 863 2.888212 TCCCTGAAGAAAATTGTGGGG 58.112 47.619 0.00 0.00 34.27 4.96
1038 1053 5.249393 AGAGAGAAGAGAGAGAGAGAGTTGT 59.751 44.000 0.00 0.00 0.00 3.32
1040 1055 5.723887 AGAGAGAGAAGAGAGAGAGAGAGTT 59.276 44.000 0.00 0.00 0.00 3.01
1041 1056 5.276440 AGAGAGAGAAGAGAGAGAGAGAGT 58.724 45.833 0.00 0.00 0.00 3.24
1042 1057 5.598005 AGAGAGAGAGAAGAGAGAGAGAGAG 59.402 48.000 0.00 0.00 0.00 3.20
1043 1058 5.523588 AGAGAGAGAGAAGAGAGAGAGAGA 58.476 45.833 0.00 0.00 0.00 3.10
1133 1155 0.980231 ATGACAGCTCCTCCTGGTCC 60.980 60.000 0.00 0.00 37.16 4.46
1331 1353 4.840005 GAGAAGAAGGCGCCCGGG 62.840 72.222 26.15 19.09 0.00 5.73
1934 1980 3.311110 GGGTCCACGGTGAGCTCA 61.311 66.667 13.74 13.74 33.34 4.26
2507 2598 2.847234 TTGGTCACGTCCCAGCCT 60.847 61.111 3.85 0.00 32.49 4.58
2531 2622 1.905512 GTTCTGCCGGTCCAGGTAT 59.094 57.895 1.90 0.00 33.64 2.73
2651 2742 2.498807 ATCGGCCGATCGATCATATG 57.501 50.000 34.60 11.51 45.43 1.78
2654 2745 4.278419 TGATTATATCGGCCGATCGATCAT 59.722 41.667 42.11 30.20 45.43 2.45
2656 2747 4.224715 TGATTATATCGGCCGATCGATC 57.775 45.455 42.11 35.24 45.43 3.69
2658 2749 3.883489 AGATGATTATATCGGCCGATCGA 59.117 43.478 42.11 27.54 43.61 3.59
2659 2750 4.222886 GAGATGATTATATCGGCCGATCG 58.777 47.826 42.11 9.14 36.17 3.69
2677 2768 4.156008 GGATGTTTGTTTGCTAACGGAGAT 59.844 41.667 6.55 1.90 37.06 2.75
2694 2785 3.069158 GGTGTACTGCTATACGGGATGTT 59.931 47.826 0.00 0.00 0.00 2.71
2695 2786 2.626743 GGTGTACTGCTATACGGGATGT 59.373 50.000 0.00 0.00 0.00 3.06
2696 2787 2.626266 TGGTGTACTGCTATACGGGATG 59.374 50.000 0.00 0.00 0.00 3.51
2697 2788 2.953453 TGGTGTACTGCTATACGGGAT 58.047 47.619 0.00 0.00 0.00 3.85
2713 2804 8.184192 GGTGTCTGTAAATTTTGATCTATGGTG 58.816 37.037 0.00 0.00 0.00 4.17
2750 2842 5.201713 TGTAACTGACAAGAACAGAGAGG 57.798 43.478 0.00 0.00 38.55 3.69
2756 2848 5.522460 GCTGTAACTGTAACTGACAAGAACA 59.478 40.000 0.00 0.00 37.70 3.18
2761 2853 3.386486 CCGCTGTAACTGTAACTGACAA 58.614 45.455 0.00 0.00 37.70 3.18
2781 2873 2.116238 TGGTCAGGTATGGAGTTAGCC 58.884 52.381 0.00 0.00 0.00 3.93
2789 2881 6.720112 AATGAAATGAATGGTCAGGTATGG 57.280 37.500 0.00 0.00 37.14 2.74
2813 2905 5.860182 CGTCAAAACGGAGAGTAACAATCTA 59.140 40.000 0.00 0.00 45.21 1.98
2814 2906 4.684703 CGTCAAAACGGAGAGTAACAATCT 59.315 41.667 0.00 0.00 45.21 2.40
2815 2907 4.942765 CGTCAAAACGGAGAGTAACAATC 58.057 43.478 0.00 0.00 45.21 2.67
2816 2908 4.985044 CGTCAAAACGGAGAGTAACAAT 57.015 40.909 0.00 0.00 45.21 2.71
2829 2921 8.015658 AGTAACAATCTAATGAAGCGTCAAAAC 58.984 33.333 6.39 0.00 37.30 2.43
2830 2922 8.094798 AGTAACAATCTAATGAAGCGTCAAAA 57.905 30.769 6.39 0.00 37.30 2.44
2831 2923 7.386573 TGAGTAACAATCTAATGAAGCGTCAAA 59.613 33.333 6.39 0.00 37.30 2.69
2832 2924 6.871492 TGAGTAACAATCTAATGAAGCGTCAA 59.129 34.615 6.39 0.00 37.30 3.18
2833 2925 6.394809 TGAGTAACAATCTAATGAAGCGTCA 58.605 36.000 4.40 4.40 38.41 4.35
2834 2926 6.887376 TGAGTAACAATCTAATGAAGCGTC 57.113 37.500 0.00 0.00 0.00 5.19
2835 2927 6.818644 ACATGAGTAACAATCTAATGAAGCGT 59.181 34.615 0.00 0.00 30.55 5.07
2836 2928 7.121911 CACATGAGTAACAATCTAATGAAGCG 58.878 38.462 0.00 0.00 30.55 4.68
2837 2929 7.978982 ACACATGAGTAACAATCTAATGAAGC 58.021 34.615 0.00 0.00 30.55 3.86
2838 2930 9.764870 CAACACATGAGTAACAATCTAATGAAG 57.235 33.333 0.00 0.00 30.55 3.02
2839 2931 8.729756 CCAACACATGAGTAACAATCTAATGAA 58.270 33.333 0.00 0.00 30.55 2.57
2840 2932 7.882791 ACCAACACATGAGTAACAATCTAATGA 59.117 33.333 0.00 0.00 30.55 2.57
2841 2933 7.964559 CACCAACACATGAGTAACAATCTAATG 59.035 37.037 0.00 0.00 31.85 1.90
2842 2934 7.882791 TCACCAACACATGAGTAACAATCTAAT 59.117 33.333 0.00 0.00 0.00 1.73
2843 2935 7.220740 TCACCAACACATGAGTAACAATCTAA 58.779 34.615 0.00 0.00 0.00 2.10
2844 2936 6.764379 TCACCAACACATGAGTAACAATCTA 58.236 36.000 0.00 0.00 0.00 1.98
2891 3014 5.929697 ATGTATGTATTCACATCAAGCCG 57.070 39.130 0.00 0.00 44.42 5.52
2915 3045 8.602424 TCCCTCTTTATTGGGTATGTATGTATG 58.398 37.037 0.00 0.00 43.74 2.39
2916 3046 8.751215 TCCCTCTTTATTGGGTATGTATGTAT 57.249 34.615 0.00 0.00 43.74 2.29
2917 3047 8.751215 ATCCCTCTTTATTGGGTATGTATGTA 57.249 34.615 0.00 0.00 43.74 2.29
2918 3048 7.648177 ATCCCTCTTTATTGGGTATGTATGT 57.352 36.000 0.00 0.00 43.74 2.29
2919 3049 8.163408 TGAATCCCTCTTTATTGGGTATGTATG 58.837 37.037 0.00 0.00 43.74 2.39
2920 3050 8.287904 TGAATCCCTCTTTATTGGGTATGTAT 57.712 34.615 0.00 0.00 43.74 2.29
2921 3051 7.349859 ACTGAATCCCTCTTTATTGGGTATGTA 59.650 37.037 0.00 0.00 43.74 2.29
2922 3052 6.160459 ACTGAATCCCTCTTTATTGGGTATGT 59.840 38.462 0.00 0.00 43.74 2.29
2923 3053 6.605119 ACTGAATCCCTCTTTATTGGGTATG 58.395 40.000 0.00 0.00 43.74 2.39
2924 3054 6.848562 ACTGAATCCCTCTTTATTGGGTAT 57.151 37.500 0.00 0.00 43.74 2.73
2925 3055 6.652205 AACTGAATCCCTCTTTATTGGGTA 57.348 37.500 0.00 0.00 43.74 3.69
2926 3056 5.536497 AACTGAATCCCTCTTTATTGGGT 57.464 39.130 0.00 0.00 43.74 4.51
2938 3068 5.220796 GGACGCTAAATTGTAACTGAATCCC 60.221 44.000 0.00 0.00 0.00 3.85
2969 3103 3.600388 GAATCTTGTTCCGGATCACTGT 58.400 45.455 14.83 1.23 0.00 3.55
2970 3104 2.939103 GGAATCTTGTTCCGGATCACTG 59.061 50.000 14.83 10.78 0.00 3.66
2973 3107 2.680805 GCAGGAATCTTGTTCCGGATCA 60.681 50.000 11.25 11.25 43.23 2.92
2974 3108 1.943340 GCAGGAATCTTGTTCCGGATC 59.057 52.381 4.15 4.96 43.23 3.36
2975 3109 1.743772 CGCAGGAATCTTGTTCCGGAT 60.744 52.381 4.15 0.00 43.23 4.18
2976 3110 0.391130 CGCAGGAATCTTGTTCCGGA 60.391 55.000 0.00 0.00 43.23 5.14
2977 3111 0.673644 ACGCAGGAATCTTGTTCCGG 60.674 55.000 0.00 0.00 43.23 5.14
2982 3116 0.957395 CCAGCACGCAGGAATCTTGT 60.957 55.000 0.00 0.00 0.00 3.16
2983 3117 0.957395 ACCAGCACGCAGGAATCTTG 60.957 55.000 7.54 0.00 0.00 3.02
3079 3217 3.795280 CTGTGTGCTGTGTGTGCGC 62.795 63.158 0.00 0.00 40.87 6.09
3081 3219 2.025156 GCTGTGTGCTGTGTGTGC 59.975 61.111 0.00 0.00 38.95 4.57
3082 3220 1.354155 CTGCTGTGTGCTGTGTGTG 59.646 57.895 0.00 0.00 43.37 3.82
3083 3221 1.820906 CCTGCTGTGTGCTGTGTGT 60.821 57.895 0.00 0.00 43.37 3.72
3084 3222 1.504647 CTCCTGCTGTGTGCTGTGTG 61.505 60.000 0.00 0.00 43.37 3.82
3085 3223 1.227764 CTCCTGCTGTGTGCTGTGT 60.228 57.895 0.00 0.00 43.37 3.72
3086 3224 1.964891 CCTCCTGCTGTGTGCTGTG 60.965 63.158 0.00 0.00 43.37 3.66
3087 3225 1.486997 ATCCTCCTGCTGTGTGCTGT 61.487 55.000 0.00 0.00 43.37 4.40
3088 3226 0.743701 GATCCTCCTGCTGTGTGCTG 60.744 60.000 0.00 0.00 43.37 4.41
3089 3227 1.601171 GATCCTCCTGCTGTGTGCT 59.399 57.895 0.00 0.00 43.37 4.40
3090 3228 1.451028 GGATCCTCCTGCTGTGTGC 60.451 63.158 3.84 0.00 43.25 4.57
3097 3235 2.570135 GTTTCAGATGGATCCTCCTGC 58.430 52.381 21.65 10.04 37.46 4.85
3133 3271 1.078637 GGGTAGGAAGCACGGAACC 60.079 63.158 0.00 0.00 0.00 3.62
3200 3367 1.270274 CACAACCACACCACATCCATG 59.730 52.381 0.00 0.00 0.00 3.66
3201 3368 1.133513 ACACAACCACACCACATCCAT 60.134 47.619 0.00 0.00 0.00 3.41
3202 3369 0.257328 ACACAACCACACCACATCCA 59.743 50.000 0.00 0.00 0.00 3.41
3203 3370 1.398692 AACACAACCACACCACATCC 58.601 50.000 0.00 0.00 0.00 3.51
3220 3387 1.710816 TCCAACCAACCCATCCAAAC 58.289 50.000 0.00 0.00 0.00 2.93
3276 3443 2.543777 TCGGCCCACTAATTATCAGC 57.456 50.000 0.00 0.00 0.00 4.26
3301 3468 3.278574 GCACTGCTGGTGGTGATAATAA 58.721 45.455 11.18 0.00 45.44 1.40
3304 3471 3.248043 GCACTGCTGGTGGTGATAA 57.752 52.632 11.18 0.00 45.44 1.75
3346 3513 1.195115 ATACACACGCACCTCTGGAT 58.805 50.000 0.00 0.00 0.00 3.41
3347 3514 0.973632 AATACACACGCACCTCTGGA 59.026 50.000 0.00 0.00 0.00 3.86
3348 3515 1.359848 GAATACACACGCACCTCTGG 58.640 55.000 0.00 0.00 0.00 3.86
3349 3516 1.066858 AGGAATACACACGCACCTCTG 60.067 52.381 0.00 0.00 0.00 3.35
3350 3517 1.267121 AGGAATACACACGCACCTCT 58.733 50.000 0.00 0.00 0.00 3.69
3351 3518 2.165845 AGTAGGAATACACACGCACCTC 59.834 50.000 0.00 0.00 0.00 3.85
3362 3529 4.403585 AAAGAAGCCGGAGTAGGAATAC 57.596 45.455 5.05 0.00 0.00 1.89
3402 3569 0.539986 TAGCCGTTCCATCCTTCACC 59.460 55.000 0.00 0.00 0.00 4.02
3404 3571 1.568504 ACTAGCCGTTCCATCCTTCA 58.431 50.000 0.00 0.00 0.00 3.02
3405 3572 2.693267 AACTAGCCGTTCCATCCTTC 57.307 50.000 0.00 0.00 0.00 3.46
3406 3573 4.080526 ACAATAACTAGCCGTTCCATCCTT 60.081 41.667 0.00 0.00 37.05 3.36
3407 3574 3.454812 ACAATAACTAGCCGTTCCATCCT 59.545 43.478 0.00 0.00 37.05 3.24
3408 3575 3.805207 ACAATAACTAGCCGTTCCATCC 58.195 45.455 0.00 0.00 37.05 3.51
3409 3576 4.634443 ACAACAATAACTAGCCGTTCCATC 59.366 41.667 0.00 0.00 37.05 3.51
3410 3577 4.394920 CACAACAATAACTAGCCGTTCCAT 59.605 41.667 0.00 0.00 37.05 3.41
3411 3578 3.749088 CACAACAATAACTAGCCGTTCCA 59.251 43.478 0.00 0.00 37.05 3.53
3412 3579 3.126343 CCACAACAATAACTAGCCGTTCC 59.874 47.826 0.00 0.00 37.05 3.62
3425 3592 3.554934 TGACTCTGCTTTCCACAACAAT 58.445 40.909 0.00 0.00 0.00 2.71
3436 3603 3.087031 CAATTGACCCATGACTCTGCTT 58.913 45.455 0.00 0.00 0.00 3.91
3447 3614 2.091610 TCCCACTCAAACAATTGACCCA 60.092 45.455 13.59 0.00 40.59 4.51
3448 3615 2.593026 TCCCACTCAAACAATTGACCC 58.407 47.619 13.59 0.00 40.59 4.46
3461 3628 4.944317 AGCAAGTAAAATAGCTTCCCACTC 59.056 41.667 0.00 0.00 32.52 3.51
3507 3674 5.438761 TTCTTTTTGAAGTGCTTCTAGGC 57.561 39.130 12.44 0.00 40.14 3.93
3521 3688 4.992381 ACGAACGGATCTCTTCTTTTTG 57.008 40.909 0.00 0.00 0.00 2.44
3537 3704 2.673833 CAAGACACTCCCAGTACGAAC 58.326 52.381 0.00 0.00 0.00 3.95
3544 3711 1.239968 GCCAAGCAAGACACTCCCAG 61.240 60.000 0.00 0.00 0.00 4.45
3545 3712 1.228245 GCCAAGCAAGACACTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
3546 3713 2.328099 CGCCAAGCAAGACACTCCC 61.328 63.158 0.00 0.00 0.00 4.30
3633 3800 9.173844 TTTCGTTAATGAAATCGGAGGGAAACC 62.174 40.741 17.06 0.00 41.10 3.27
3634 3801 4.632688 TCGTTAATGAAATCGGAGGGAAAC 59.367 41.667 0.00 0.00 0.00 2.78
3635 3802 4.834534 TCGTTAATGAAATCGGAGGGAAA 58.165 39.130 0.00 0.00 0.00 3.13
3636 3803 4.475051 TCGTTAATGAAATCGGAGGGAA 57.525 40.909 0.00 0.00 0.00 3.97
3637 3804 4.475051 TTCGTTAATGAAATCGGAGGGA 57.525 40.909 7.67 0.00 0.00 4.20
3638 3805 4.201881 GGTTTCGTTAATGAAATCGGAGGG 60.202 45.833 22.33 0.00 39.80 4.30
3639 3806 4.393680 TGGTTTCGTTAATGAAATCGGAGG 59.606 41.667 22.33 0.00 40.97 4.30
3640 3807 5.539582 TGGTTTCGTTAATGAAATCGGAG 57.460 39.130 22.33 0.00 40.97 4.63
3641 3808 5.943706 TTGGTTTCGTTAATGAAATCGGA 57.056 34.783 22.33 13.44 40.97 4.55
3642 3809 6.399564 GCTTTTGGTTTCGTTAATGAAATCGG 60.400 38.462 22.33 14.78 40.97 4.18
3643 3810 6.143118 TGCTTTTGGTTTCGTTAATGAAATCG 59.857 34.615 22.33 12.09 40.97 3.34
3644 3811 7.359181 CCTGCTTTTGGTTTCGTTAATGAAATC 60.359 37.037 22.33 21.95 39.80 2.17
3645 3812 6.423604 CCTGCTTTTGGTTTCGTTAATGAAAT 59.576 34.615 22.33 0.00 39.80 2.17
3646 3813 5.751028 CCTGCTTTTGGTTTCGTTAATGAAA 59.249 36.000 17.06 17.06 35.58 2.69
3647 3814 5.285651 CCTGCTTTTGGTTTCGTTAATGAA 58.714 37.500 6.00 6.00 0.00 2.57
3648 3815 4.794655 GCCTGCTTTTGGTTTCGTTAATGA 60.795 41.667 0.00 0.00 0.00 2.57
3649 3816 3.428534 GCCTGCTTTTGGTTTCGTTAATG 59.571 43.478 0.00 0.00 0.00 1.90
3650 3817 3.068873 TGCCTGCTTTTGGTTTCGTTAAT 59.931 39.130 0.00 0.00 0.00 1.40
3651 3818 2.427453 TGCCTGCTTTTGGTTTCGTTAA 59.573 40.909 0.00 0.00 0.00 2.01
3652 3819 2.025155 TGCCTGCTTTTGGTTTCGTTA 58.975 42.857 0.00 0.00 0.00 3.18
3653 3820 0.820871 TGCCTGCTTTTGGTTTCGTT 59.179 45.000 0.00 0.00 0.00 3.85
3654 3821 0.385390 CTGCCTGCTTTTGGTTTCGT 59.615 50.000 0.00 0.00 0.00 3.85
3655 3822 0.667993 TCTGCCTGCTTTTGGTTTCG 59.332 50.000 0.00 0.00 0.00 3.46
3656 3823 2.669391 CGATCTGCCTGCTTTTGGTTTC 60.669 50.000 0.00 0.00 0.00 2.78
3657 3824 1.270550 CGATCTGCCTGCTTTTGGTTT 59.729 47.619 0.00 0.00 0.00 3.27
3658 3825 0.883833 CGATCTGCCTGCTTTTGGTT 59.116 50.000 0.00 0.00 0.00 3.67
3659 3826 0.250901 ACGATCTGCCTGCTTTTGGT 60.251 50.000 0.00 0.00 0.00 3.67
3660 3827 0.883833 AACGATCTGCCTGCTTTTGG 59.116 50.000 0.00 0.00 0.00 3.28
3661 3828 1.973138 CAACGATCTGCCTGCTTTTG 58.027 50.000 0.00 0.00 0.00 2.44
3662 3829 0.242017 GCAACGATCTGCCTGCTTTT 59.758 50.000 0.00 0.00 36.25 2.27
3663 3830 0.607489 AGCAACGATCTGCCTGCTTT 60.607 50.000 3.46 0.00 42.37 3.51
3664 3831 1.002868 AGCAACGATCTGCCTGCTT 60.003 52.632 3.46 0.00 42.37 3.91
3665 3832 0.607489 AAAGCAACGATCTGCCTGCT 60.607 50.000 3.46 6.23 46.85 4.24
3666 3833 0.455633 CAAAGCAACGATCTGCCTGC 60.456 55.000 3.46 4.34 43.73 4.85
3667 3834 0.169672 CCAAAGCAACGATCTGCCTG 59.830 55.000 3.46 2.40 43.73 4.85
3668 3835 0.250901 ACCAAAGCAACGATCTGCCT 60.251 50.000 3.46 0.00 43.73 4.75
3669 3836 0.598065 AACCAAAGCAACGATCTGCC 59.402 50.000 3.46 0.00 43.73 4.85
3670 3837 1.689959 CAACCAAAGCAACGATCTGC 58.310 50.000 0.00 0.00 42.97 4.26
3671 3838 1.001487 TGCAACCAAAGCAACGATCTG 60.001 47.619 0.00 0.00 39.39 2.90
3680 3847 2.355009 CTGCCGTGCAACCAAAGC 60.355 61.111 0.00 0.00 38.41 3.51
3694 3861 7.710766 AACTAGTACTGTTTTTACTCACTGC 57.289 36.000 5.39 0.00 31.99 4.40
3715 3882 5.063880 CCAAGACAAAGCCAGTAAGTAACT 58.936 41.667 0.00 0.00 39.81 2.24
3716 3883 5.061179 TCCAAGACAAAGCCAGTAAGTAAC 58.939 41.667 0.00 0.00 0.00 2.50
3717 3884 5.298989 TCCAAGACAAAGCCAGTAAGTAA 57.701 39.130 0.00 0.00 0.00 2.24
3728 3895 4.214119 TGCTTCTTCGAATCCAAGACAAAG 59.786 41.667 13.21 0.00 29.30 2.77
3733 3900 3.338249 CCTTGCTTCTTCGAATCCAAGA 58.662 45.455 19.79 4.69 33.40 3.02
3742 3909 0.731417 CCATCAGCCTTGCTTCTTCG 59.269 55.000 0.00 0.00 36.40 3.79
3760 3927 1.886542 GTGTTGTGGAAGGAACCATCC 59.113 52.381 8.02 8.02 46.98 3.51
3775 3942 2.161211 TGTCATGTGTGTGTGTGTGTTG 59.839 45.455 0.00 0.00 0.00 3.33
3776 3943 2.161410 GTGTCATGTGTGTGTGTGTGTT 59.839 45.455 0.00 0.00 0.00 3.32
3792 3959 5.867903 AAAATGAAGGACCAAATGTGTCA 57.132 34.783 0.00 0.00 34.36 3.58
3793 3960 6.018832 CACAAAAATGAAGGACCAAATGTGTC 60.019 38.462 0.00 0.00 32.11 3.67
3805 3976 2.539274 CACGCAACCACAAAAATGAAGG 59.461 45.455 0.00 0.00 0.00 3.46
3806 3977 3.186119 ACACGCAACCACAAAAATGAAG 58.814 40.909 0.00 0.00 0.00 3.02
3840 4011 1.499056 GTTGCATCTCACGCACCTG 59.501 57.895 0.00 0.00 39.59 4.00
3873 4044 1.443802 GCTGGTGCTGTTCCTAGAAC 58.556 55.000 0.47 0.47 36.03 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.