>input_sequence_40756
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-------------------------------------------------ACAATCCAAAACCCCGAGAACCTTCTCTCTC
-----CTCTCTCACAACT-------CTCTCTCTCTCTTCTCTCTCTCTCTAGAACCGCGAGAACATGGTGCAACAGCACA
GAATCTACGTCGTGCAGTTCGACAAGGGGGAGCCGGACCAGGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGC
GGCCGCCGGATCATGTACTACTACCATGACTACGGCACCGGAGGCGGCGCCGGCAAGAACGGCAAGCCGGCCAAGTCCAG
GGCGCTCAGCCTGAGCGGCTTCTTCGGCTTGCTCCTCATCTGCCTTTTCGGCCTCGCCACGCTCCTCGCGGCCCCGGGCG
CCTTCTTCTCCTTCGCGCGCACCGGCGGC---------GCGGCGGCGACGGCGGCGGCCACGCAGCAGCGGCAGAGCGAG
CGGTGCTCCGGGATCGGCAACGACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGACATGTGCTTCGCGCGCGGCGA
CCTGCGCATGCACTCGGCGAGCGCGTCGTTCCAGCTCGTGTCCTCCGCTGGGCGACCGGC------GGAGGAGGAGAGGA
TACGGCCGTACACGCGCAAGTGGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGGTTCCGGCGCGTGCCCCCCGGC
GA---------GGCGGCGCGCTGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAA
CGTGTACCACGAGTTCAACGACGGCCTCCTCCCGATGTTCGTGACTGCGGGCCACCTCCAGCGCCGCGTGGTGTTGGTCA
TCCTCGAGTACCACGACTGGTGGATGACCAAGTACGGCGACGTCGTGTCCCGCCTCTCGGCGTTCCCGCCCATCGACTTC
ACCGCCGACCGCCGCGTGCACTGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGTGAGCTCACCGTGGACCCGGC
CAGGACCCCCGAGGGCCGGA---GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACC
TGGAGCGCATGGAGCGCAAGGCCGCCCGCAAGCAGCGCCGCGCCAGC---------------------------------
AAGCACCCGGCGGCTCCGGCG---------GAGAGGCCGAAGCTGGTGATCGTGTCTCGGACGGGGTCCCGCGTGATCGA
GAACGAGGAGGAGCTCAAGGCGGTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTGCGGCCGGAGCGGAGCACGGAGA
TGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTTC
ATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCGAACGAGTACTACGGCGAGCCGGC
GGCGCGGCTCGGCCTGCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCGCTCGCCCGCGAGTACCCGGCCGGCC
ACCCCGTGCTGACGGACCCCGCCGGCGTGGCGCAGCGAGGCTGGGACGTGACCAAGAAGGTATACCTGGACCGGCAGAAC
GTGCGGCTCGACCTGGCGCGGTTCCGGGAGGAGCTGGTCGCCGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCG
GCCGAAAACCAAACCTCTTGCCATATGATCGATCGGCCGATATAATCATCTCCGTTAGCAAACAAACATCCCGTATAGCA
GTACACCATAGATCAAAATTTACAGACACC-TTTCTCCTCTCCTCTCTGTTCTTGTCAGTTACAGTTACAGCGGCTAACT
CCATACCTGACCATTCATTTCATTTAGATTGTTACTCTCCGTTTTGACGCTTCATTA-----------------------
--------GATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCGATGCCGGCT-------TGATGTGAATACATA
CATACATACATACATACCCAATAAA-------------------------------------------------------
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>chr2A_1_TraesCS2A01G132600
TATAAGGGCTTCAAATAAATTGTCTATGTATACTTCTGCCTTCTCTATAGGTGTTTATTTTGAGGGTGGTGGCGCATACG
AGAAGGACACAAGATGCATATTTGGTTATTCTTACTTTTTTTCTAGGGAATGGTAAAAAATGTATACATTTATACAATGA
ACACAAATATAGCATCTAACGCGACATCCGGTGCAACAAGATATTCATCTATCAACTAATGTGACAATCGGCGCAACAAA
ATATGGGTCTATCATCTAATGTGACACTAGGCGCAACAAGATATGGATCTATCATCTAACGTGACTTTAGGCGCAACAAG
ATATGTATGACGTATCTATCATCAAACCAACTAGCGTCACTCTGAAGTCTTGCATTTGTGAATTGTCTCCAACCAAGCAC
ATTATACAACAAATACTGATCTAATGCAGCCCTTTAGCGCAACTAGATATGGATCAACCATACAAACAACCATCGTCGCT
ATGCTGTCTTGCATTTGTGAGTTGTTTCAAATCGTGCATGATATACCATCACAAGAGATAGACCTAACCGCTTTATCTAA
ACGACTATTCTCCGTCACTCTAGATGTATCACGCATGTAGCGGCTACAAATCAAGCAATGTGGCACGGGAAAAGCGAGAA
GACTCGCCTTTTCTGAGTTGTACCGGTGTCGAATAGTGACGGCGTACGATGGAAGCGTTGTGTCTGAATACATGGCTGGC
TTTAATTTT------GAGAGAAAAGGAACGTGAGAAGGTAAGTGCCCATTTATGATTTTGACATTTGACTAATGAATCGC
AGTTACCCAACAAAAGCTTTGCGCCGATATCCCGCCATTGATGCTCCGTTGCAATGAGAGGACCCCACAA-TTTTCTTCA
GGGATGTTCCATGGGTGCTGTGGCCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTC--TACTCC
CTTCTGCAGTGCCATTTATAGCTCCCGGGCTCTCTCCTCTCGCTTCGTCACAATCCAAAACCCCGAGAACCTTCTCTCTC
-----CTCTCTCACAACT-------CTCTCTCTCTCTTCTCTCTCTCTCTAGAACCGCGAGAACATGGTGCAACAGCACA
GAATCTACGTCGTGCAGTTCGACAAGGGGGAGCCGGACCAGGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGC
GGCCGCCGGATCATGTACTACTACCATGACTACGGCACCGGAGGCGGCGCCGGCAAGAACGGCAAGCCGGCCAAGTCCAG
GGCGCTCAGCCTGAGCGGCTTCTTCGGCTTGCTCCTCATCTGCCTTTTCGGCCTCGCCACGCTCCTCGCGGCCCCGGGCG
CCTTCTTCTCCTTCGCGCGCACCGGCGGC---------GCGGCGGCGACGGCGGCGGCCACGCAGCAGCGGCAGAGCGAG
CGGTGCTCCGGGATCGGCAACGACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGACATGTGCTTCGCGCGCGGCGA
CCTGCGCATGCACTCGGCGAGCGCGTCGTTCCAGCTCGTGTCCTCCGCTGGGCGACCGGC------GGAGGAGGAGAGGA
TACGGCCGTACACGCGCAAGTGGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGGTTCCGGCGCGTGCCCCCCGGC
GA---------GGCGGCGCGCTGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAA
CGTGTACCACGAGTTCAACGACGGCCTCCTCCCGATGTTCGTGACTGCGGGCCACCTCCAGCGCCGCGTGGTGTTGGTCA
TCCTCGAGTACCACGACTGGTGGATGACCAAGTACGGCGACGTCGTGTCCCGCCTCTCGGCGTTCCCGCCCATCGACTTC
ACCGCCGACCGCCGCGTGCACTGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGTGAGCTCACCGTGGACCCGGC
CAGGACCCCCGAGGGCCGGA---GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACC
TGGAGCGCATGGAGCGCAAGGCCGCCCGCAAGCAGCGCCGCGCCAGC---------------------------------
AAGCACCCGGCGGCTCCGGCG---------GAGAGGCCGAAGCTGGTGATCGTGTCTCGGACGGGGTCCCGCGTGATCGA
GAACGAGGAGGAGCTCAAGGCGGTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTGCGGCCGGAGCGGAGCACGGAGA
TGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTTC
ATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCGAACGAGTACTACGGCGAGCCGGC
GGCGCGGCTCGGCCTGCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCGCTCGCCCGCGAGTACCCGGCCGGCC
ACCCCGTGCTGACGGACCCCGCCGGCGTGGCGCAGCGAGGCTGGGACGTGACCAAGAAGGTATACCTGGACCGGCAGAAC
GTGCGGCTCGACCTGGCGCGGTTCCGGGAGGAGCTGGTCGCCGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCG
GCCGAAAACCAAACCTCTTGCCATATGATCGATCGGCCGATATAATCATCTCCGTTAGCAAACAAACATCCCGTATAGCA
GTACACCATAGATCAAAATTTACAGACACC-TTTCTCCTCTCCTCTCTGTTCTTGTCAGTTACAGTTACAGCGGCTAACT
CCATACCTGACCATTCATTTCATTTAGATTGTTACTCTCCGTTTTGACGCTTCATTA-----------------------
--------GATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCGATGCCGGCT-------TGATGTGAATACATA
CATACATACATACATACCCAATAAAGAGGGATTCAGTTACAATTTAGCGTCCT----GACAGACAGTGATCCGGAACAAG
ATTCCTGCGTGCTGGTGGCAGAGCGGCAGAGGCAGAGCACCGGCCGGTTGGTG----GTGCTTGCAGGGCACGAACTGTG
AACCGCCTCTGCTGTTGCGCACACACAGCACACAGCAGGAGGATCCATCTGAAACGCATGCAGAGGGCAGG---------
-----------------GTTCCGTGCTTCCTACCCCGGATTCCAATCCAATCCAA---TATGCCGATCAATCGACCATCG
ATCGTCCATGGATGTGGTGTGGTTGTGTTTGGATGGGTTGGTTGGAACATACTGGTCGGCTTTCGTTAAGCGTCAATAAA
GCGCTGATAATTAGTGGGCCGATAAAGTTATTATCACCACCAGCAGTGCTCGGGGATGGCGACTGCGGCTGCATCCAGAG
GTGCGTGTGTATTCCTACTCCGGCTTCTTTTTCTACTGCTGCCACTGAGGTGAAGGATGGAACGGCTAGTTATTGTTGTG
GAAAGCAGAGTCATGGGTCAATTGTTTGAGTGGGAAGCTATTTTACTTGCTTGCGCAGGCCAGTCACTGCCTTGCCTAGA
AGCACTTCAAAAAGAAGAGATCCGTTCGTACTGGGAGTGTCTTGCTTGGCGCTCTGGGTAAGTCTAGAACCGATGCACAC
GCTTGATCGTTGCTTTGGTTTTTTTTTTTGAATAAAAGAGGTTTCCCTCCGATTTCATTAACGAAACCAAAAGCAGGCAG
ATCGTTGCTTTGGTTGCACGGCAGTGAGTAAAAACAGTACTAGTTACTTACTGGCTTTGTCTTGGATTCGAAGAAGCAAG
GCTGATGGATGGTTCCTTCCACAACACACACACACACATGA----CACATTTGGTCCTTCATTTTTGTGGTTGCGTGTCA
GTAAAAACCTCAGGTGCGTGAGATGCAACCTTTTTCCGCGGCGGTT---CTAGGAACAGCACCAGCGGAATGACAGCTCA
AATCATTTTGCGTGTACTATTAGCGGAGT
>chr2B_1
TATGAGGGATTCACATAAATTGTCTATGTATACTTCTGCCTTCTTTGTAGGTGTTTGTTTTGAGGGTGGTGGCGCACACT
AGAAGGACACAAGATGCATATTTGGTATTCTTAAA---TTTACTAAAGAATAGCAAAAAATAA--ACATTTGTACAATGA
ACACAAACCTAGCATCTAACGCGACATGCGGTGCAACAAGATATGGGTCTATCAACTAATGCGACACTCGGCGCAACAAG
ATATGAGTCTATCATCTAATGCGACATCTGGGCGCAAT----------------------GTGACTTTAGGCGCAACAAG
ATAT---------ATCTAGCATCGAACAAACTAGCGTCACTCTGAAGTCTTGCGCTTGTGAGTTGTTTCAAACCGAGGAG
GATATACAAGAGATACCGATCTAATGCGACACTTGAGCACAACAAGATATGGACCGACCATCCAGACAACTATCGTCGCT
ATGATATCCTGCATTTGTGAGTTGTTTCAAATCGAGCACGATATACCATCACAAGAGATAGACCACACCGCTTTATCTGA
ACAACTATTCTCTGTCAGTCTAGATGTATCATGCACGGAGCGGCTACAAATCAAGCGATCTGACGCGGGAAAAGCGAGAA
GACTCGCCTTTTCTGAGTTGTATCGGTGTCGAATAGCGATAGCGTACGATAGAAGCGTCGTGTCTGAATGTATGAATGGC
TTTAATTTT------GAGAGAAAA-GAATGTGAGAAGATAAGTGCTCATTTATGATTTTGACATTTGACTAATGAATCCC
AGTTACCCAACAAAAGCTTTACGCCGATATCCCGTCATTGATGCTCCGTTGCAATCAAAGGA-CCCACAA-TTTTCTTCA
AGGATGTTCCATGGGTGCTGTGGTCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTC--TACTCC
CTTCTGCAGTGCCATTTATAGCTCCCGGGTTCTCTCCTCTCGCTTCGTCAG--TCCAAAACCCCGAGAACCTTTCTCTCT
CCTCTCTCTCTCTCTCTCCCGTCGACTCTCTCCCC--TCTCTCTCTCTCTAGAACCGCAGGAACATGGTGCAACAGCACA
GAATCTACGTCGTGCAGTTCGACAAGGGGGAGCCTGATCATGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGC
GGCCGCCGGATCATGTACTACTACCATGACTACGGCACCGGAGGCGCCGCCGGCAAGAACGGCAAGCCGGCCAAGGGCAG
GGCGCTCAGCCTGAGCGGCTTCTTCGGCTTGCTCCTCATCTGCCTTTTCGGCCTGGCCACGCTCCTCGCGGCTCCGGGCG
CCTTCTTCTCCTTCGCGCGCACCGGCGGC---------GCGGCGGC---------GGCCACGCAGCAGCAGCAGAGCGAG
CGGTGCTCCGGGATCGGCAACGACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGATATGTGCTTCGCGCGCGGCGA
CCTGCGCATGCACTCGGCGAGCGCGTCGTTCCAGCTCGTGTCCTCCGCCGGGCGACCGGCGGTGGAGGAGGAGGAGCGGA
TACGGCCGTACACGCGCAAGTGGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGCTTCCACCGCGTGTCCGCCGGC
GA---------CGCCGCGCGCTGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAA
CGTGTACCACGAGTTCAACGACGGCCTCCTCCCGATGTTCGTGACGGCGGGCCACCTCCAGCGCCGCGTGGTGTTCGTCA
TCGTCGAGTACCACGACTGGTGGATGACCAAGTACGGCGACGTCGTGTCCCGGCTGTCGGCGTTCCCGCCCATCGACTTC
ACCGCCGATCGCCGCGTGCACTGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGCGAGCTCACCGTGGACCCCGC
CAAGACCCCCGAGGGCCGGA---GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACC
TGGAGCGCATGGAGCGCAAGGCCGCCCGCAAGCAACGCCGCGCCAGCGGCGCCGCCGCCACGAAGCTCGCCCTCCCGAAC
AAGCACCTGGCGGCGCCGGCG---------GAGAGGCCGAAGCTGGTGATCGTGTCGAGGACGGGGTCCCGCGTGATCGA
GAACGAGGAGGAGCTGAAGGCGCTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTCCGGCCGGAGCGGAGCACGGAGA
TGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTGTTC
ATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCAAACGAGTACTACGGCGAGCCGGC
GGCGCGCCTCGGCCTGCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCCCTGGCCCGCGAGTACCCCGCGGGCC
ACCCCGTGCTGACGGACCCCGCCGGCGTGGCGCAGCGCGGCTGGGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAAC
GTGCGGCTCGACCTGGCGCGGTTCCGGGAAGAGCTGGTCGCGGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCG
GCCGAAAAGCAGAGCTCTTGCGATGT----GATCGGCCGATATAATCGTCTCCGTTAACAAACA----TCCCGTATAGCA
GTATACCATAGATCAAAATTTACAGACACCTTTTCTCCTCTTCTCTCAGTTCCTGTCAGTTACAGTTACAGCAGCTAACT
TCATACCTGACCATTCATTTCATT--------------------------------A-----------------------
--------GATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCGATGCTGGTTTACATGCTGATGTGAATATATG
----------------CCCAATAAAGAAGGATTCAGTTACAATTTTGCGTCGT----GACAGTGAG-----CGGAGGAAG
ATTCCTGCGTGCAAGTAGCAGGGCGCCAGAGGCAGAGCACCGGCCGGTTGGTG----GTGCTTGCAGGGCACGAACTGTA
AACCGCCTGCTGTT-----------------ACACCACGAGGATCCATCTGAAACGTATGCAGAGGCAGCCAGGGAGGTC
AGGTTAGGCAGGGAGATGTTCCGTGTTTCCTACCCCAGATTCCAATCCAATCCCAGCGTATGCCGATCAATCGATCGTTG
ATCGTC----GATGTGGTGTGGTTGTTC-TGGATGGGTTGGTTGGAACATACTAGTCGGCTTTCGTTAAGCGTCAATAAA
GCACTGATAATTAGTGGACCGATAAAGCTA-TATCACCACCAGCAGTGCTCAGGGATGGCGACTGCGGCTGC------AG
GTGCGTGTATATTCCTACTCCGGCTTCCTTTTCTACTGCTGCCACTGAAG----ACT--GAACGGCTAGTTGTTGTTGTG
GAGAGCAGAGTCACCGGTCAATTGTTTCAGTGGGAAGCTATTTTACTTACTTGCGCAGGCCAGTCACTGCCTTACCAAGA
AGCACTTAAAAAA--AGAGATCCATTCGTA---GGAGTGTCTTGCTTGGCGCTCTGGGTGAGTCTAGAACCGATACACAC
GTTAATTT-----------------------------------------------------------------------G
ATCGTTACTTCGGTTGCACGCCAGTGAGTAAAAACAGTACTG--TACTTACTGGATTTGCCTTGGATTTGAAGAACCAAG
GCA----GATGGTTCCTTCCAACACACACACACACACAC-A----CACATTTGGTGGTTCATTTTTGTGGTTGCGTGTCA
GTAAAAACCTTAGGTGCGTGAGATGCAACCTTTTCCGGGGGCGAGTGTG---GGAACAGCACTAGCGGAATGACAGCTCG
AATCA------------------------
>chr2B_1
TATAAGGGATTCACATAAATTGTCTATGTATACTCCTGCCTTCTTTGTAGGTGTTTGTTTTGAGGGTGGTGGCGCACACT
AGAAGGACACAAGATGCGTATTTGGTATTCTTAAA---TTTTCTAGAGAATAGCAAAAAATAA--ACATTTGTACAATGA
ACACAAACCTAGCATCTAACGCGACATGCGGCGCAACAAGATATGGGTCTATCAACTAATGCGACACTCGGCGCAACAAG
ATATGGGTCTATCATCTAATGCGACATCTGGGCGCAAT----------------------GTGACTTTAGGCGCAACAAG
ATAT---------ATCTAGCATCGAACGAACTAGCGTCACTCTGAAGTCTTGCGTTTGTGAGTTGTTTCAAACCGAGCAT
GATATACAAGAGATATCGATCTAATGCTACACTTGAGCGCAACAAGATATGGATCGACCATCCAGACAACTATCGTCGCT
ATGATATCTTGCATTTGTGAGTTGTTTCAAATCGAGCACGATATGCCATCACAAGAGATAGACCTCACCGCTTTATCTGA
ACGACTATTCTCCATCACTCTAGATGTATCATGCACGGAGCGGCTACAAATCAAGCGATCTGACGCAGGAAAAGCGAGAA
GACTCGCCTTTTCTGAGTTGTATCGGTGTCGAATAGCGATAGCGTACGACAGAAGTGTTGTGTCTAAATATATGGCTGGC
TTTAATTTT------GAGAGAAAA-GAATGTGAGAAGATAAGTGCTCATTTATGATCTTGACATTTGACTAATGAATCCC
AGTTACCCAACAAAAGCTTTGCGCCGATATCCCGCCATTGATGCTCTGTTTCAATCAAAGGA-CCCACAA-TTTTCTTCA
AGGATGTTCCATGGGTGCTGTGGTCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTCTATACTCC
CTTCTGCAGTGCTATTTATAGCGCCCGGGCTCTCTCCTCTCGCTTCGGCACAATCCAAAACCCCGAGAACCTTCTCTCTC
-----CTCTCTC--------------------------------------------------------------------
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>chr2D_439
GCAACAAGATATTGCTCTACTATAAAACC---------------------------------------------------
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----------------------------AACTAGCGTCACTCTGAAGTGTTGCGTTTGCGAGTTGTTTT-----------
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----------------------------AAAGCGAGCACAATATACGATCACAAGAGATAGACCACACCGCTTTATCTAA
ATGACTATTCTCCGTCACTCGAGATGTATCATGCACGGAGTGGCTACAAATCAAGCAACGGGACGCGGGAAAAGCGAGAA
GAGTCGCCTTTTCTGAGTTGTATCGGTGTCGAAAAGCGATGGCGTACGATGGAAGTGTGGTGTCTGAATATATGGCTGGC
TTTAATTTTTTTTGAGAGAGAAAA-GAATGTGAGAAGATAAGCCCTCATTTATGATTTTGACATTTGACTAATGAATCGC
AGTTACCCAACAAAAGCTTTGCGCCGATATCCCCACCTTGATGCTCCGTTGCAATCAAAGGA-CCCACAATTTTTCTTCA
AGGATGTTCCATGGGTGTTGTGGCCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTG--TACTCC
CTTCTGCCGTGCCATTTATAGCTCCCCGGCTCTCTCCTCTCGCTTCGTCACAATCCAAAACCCCGAGAACTTTCTCTCTC
-----CTCTCTCTCTCTCCCTTCGACTCTCTCTCTCTCTTCTCTCTCTCTAGAACCGCGAGAACATGGTGCAACAGCACA
GAATCTACGTCGTGCAGTTCGACAAGGGGGAGCCTGACCAGGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGC
GGCCGCCGGATCATGTACTACTACCATGACTACGGCACCGGAGGCGCCGCCGGCAAGAACGGCAAGCCGGCCAAGTCCAG
GGCGCTCAGCCTGAGCGGCTTCTTCGGCCTGCTCCTCATCTGCCTTTTCGGCCTCGCCACGCTCCTCGCGGCTCCGGGCG
CCTTCTTCTCCTTCGCGCGCACCGGCGGTGCGGCGGCGGCGGCGGC---------GGCCACGCAGCAGCAGCAGAGTGAG
AAGTGCTCCGGGATCGGCAACGACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGACATGTGCTTCGCGCGCGGCGA
CCTGCGCATGCACTCGGCGAGCGCGTCGTTCCAGCTCGTGTCCTCCGCCGGGCGACCGGCGGTGGAGGAGGAGGAGAGGA
TACGGCCGTACACGCGCAAGTGGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGCTTCCACCGCGTGTCCCCCGGC
GA---------GGCCGCGCGCTGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAA
CGTGTACCACGAGTTCAACGACGGCCTCCTCCCGATGTTCGTGACGGCGGGCCACCTCCAGCGCCGCGTGGTGTTCGTCA
TCCTCGAGTACCACGACTGGTGGATGACCAAGTACGGCGACGTCGTGTCCCGGCTCTCGGCGTTCCCGCCTATCGACTTC
ACCGCCGATCGCCGCGTGCACTGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGCGAGCTCACCGTGGACCCCGC
CAGGACCCCCGAGGGCCGGA---GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACC
TGGAGCGCATGGAGCGCAAGGCCGCCCGCAAGCAACGCCGCGCCAGCGGCGCCGCCGCCGGCAAGCTCGCGCTCCCGAGC
AAGCACCCGGCGGCTCCGGCG---------GAGAGGCCGAAGCTGGTGATCGTGTCGAGGACGGGGTCCCGCGTGATCGA
GAACGAGGAGGAGCTGAAGGCGGTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTCCGGCCGGAGCGGAGCACGGAGA
TGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTTC
ATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCGAACGAGTACTACGGCGAGCCGGC
GGCGCGCCTCGGCCTCCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCCCTGGCCCGCGAGTACCCGGCCGGCC
ACCCCGTGCTGACGGACCCCGCCGGCGTAGCGCAGCGCGGCTGGGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAAC
GTGCGGCTCGACCTGGCGCGGTTCCGGGAGGAGCTGGTCGCCGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCG
GCCGAAAACCAAACCTATTGCGATGT----GATCGGTCCATATAATCGTCTCCGTTAGCAAACA----TCCCGTATAGCA
GTATACCATAGATCAAAATTTACAGACACCTTTCTCTCTCCTCTCTCAGTTCCTGTCAGTTACAGTTACAGCAGCTAACT
TCATACCTGACCATTCATTTCATT--------------------------------AGATTGTTACTCTCTGTTTTGACG
CTTCATTAGATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCA-----GGCT-------TGATGTGAATACATA
CATA------------CCCAATAAAGAAGGATTCAGTTACAATTTTGCGTCCTGACAGACAGTGAG-----CGGAGGAAG
ATTCCTGCGTGCGAGTGGCAGAGCGCCAGAGGCAGAGCACCGGCCGGTTGGTGTTCCGTGCTTGCAGGGCACGAACTGTG
AACCGCCTCTGCTGTTACA---------CACACACCAGGAGGATCCATCTGAAACGCATGCAGAGGGCAG----------
-GGTTAGGCAGGGAGATGTTCCGTGCTTCCTACCCCGGATTCCAATCCAAC--------ATGCCGATCAATCGATCATCG
ATCGTC----GATGTGGTGTGGTTGT-TTTGGATGGGTTGGTTGGAACATACTAGTCAGCTTTCGTTAAGCGTCAGTAAA
GCACTGATAATTAGTGGGCCGATAAAGGTTGTATCACCACCAGCAGTGCTCGGAGATGGCGACTGCGGCTGC------AG
GTGCGTGTACATTCCTACTCCGGCTTCTTTTTCTACTGCTGCCACTGAAGACTGACT--GAACGGCTAGTTGTTGTTGTG
GAGAGCAGAGTCACCGGTCAATTGTTTCAGTGGGAAGCTATTTTACTTACTTGCGCAGGCCAGTCACTGCCTCACCTAGA
GGCACTTAAAAAAGAAGAGATCCATTCGTA---GGAGTGTCTTGCTTGGCGCTCTGGGTAAGTCTAGAACCGATGAACAC
GCTTGATC----------------------------------------------------------------------AG
ATCGTTACTTTGGCTGCACGCCAGTGAGTAAAAACAGTACTG--TAGTTACTGGATTTGCCTTGGATTTGAAGAAGCAAG
GCA----GATGGTTCCTTCCAACACACACACACACACAC-ACACACACATTTGGTGGTTCATTTTTGTGGTTGCGTGTCA
GTAAAAACCTTAGGTGCGTGAGATGCAACCTTTTTCCGCGGCGATGGTACTAGGAACAGCACCAGCGGAATGACAGCTCA
AATCATTTTGCGTG---TATTAGCGGA--
>chr1B_1573
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--------TACACCCGCAAGTGGGAGTCCAGCGTCATGAGCACCATCGACGAGCTGCGCCTCCGAGCCCTGCCCGACCCC
GA------GGGCGCTGCACGCTGCGACGTCCGGCACGACGTCCCCGCCGTCGTCTTCTCCACCGGCGGCTACACCGGCAA
CGTGTACCACGAGTTCAACGACGGCATCATCCCGCTCTACATCACCGCCCGGCGGTACAACAGGAAGGTGGTGTTCGTGA
TGCTCGAGTACCACGACTGGTGGATGACCAAGTACGGCCACATCGTCGAGCAGCTCTCCGACTTCCCGCCCGTCGACTTC
TCCAACGACACCCGCACGCACTGCTTCCCGGAGGCCGTCGTCGGCCTGCGCATCCACGACGAGCTCGCCATCGACGCGTC
ACGGATGCCGGGAAACCAGG---GCATCCGGGACTTCCGGCACATGCTCGACGACGCGCACCGCGGCCGCATCAACGCCA
TCATCGAGGAGGAG-------------------AACGCCGCGCCACAAGCGGCGCCGGCGGCGGCG--GCACTAGCAAAG
AAACACGTCACGGAGGCGCTCGCGGACGACGACAAGCCGCGGCTGGTGATCGTGTCGCGCAACGGGTCGCGCGCGATCGA
GAACGAGCCGGAGCTGGCGCGCGCGGCGGGGAGGGCCGGGTTCCGGGTGACGGTGCTCCGGCCGCGCCCGGACACGGAGC
TCGCGCAGATGTACCGCGTCCTGAACGGCTCGGACGTGATGGTGGGCGTGCACGGTGCCGCCATGACGCACTTCCTCTTC
ATGCGCCCGGGGTCGGTCTTCATCCAGGTGGTGCCGCTGGGAACCGACTGGGCCGCCGAGAACTACTACGGCGAGCCGGC
GCGGCGGCTCGGCCTGCGCTACGTCCCCTACAAGATCCTGCCGTCGGAGAGCTCGCTGTTCCGGCGCTACGCCAGGGACG
ACCCCGTGCTCACCGACCCCGTCGCCGTTAACGCCAAGGGATGGCAGGTCACCAAGAAGGTGTACCTCGACGGGCAGAAC
GTGCGGCTGGACATGGCGCGGTTCCGGCGACGGCTG--------------------------------------------
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>chr1D_1573
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--------TACACCCGCAAGTGGGAGTCCAGCGTCATGAGCACCATCGACGAGCTGCGCCTCCGGGCCGTGCCCGTCCCC
GACCCCGAGGGCGCTGCACGCTGCGACGTCCGGCACGACGTCCCCGCCGTCGTCTTCTCCACCGGCGGCTACACCGGCAA
CGTGTACCACGAGTTCAACGACGGCATCATCCCGCTCTACATCACCGCGCGCCGGTACAACAGGAAGGTGGTGTTCGTCA
TGCTCGAGTACCACGACTGGTGGATGACCAAGTACGGCCACATCGTCGAGCAGCTCTCCGACTTCCCGCCGGTCGACTTC
TCCAACGACACGCGCACGCACTGCTTCCCGGAGGCCGTCGTCGGCCTGCGCATCCACGACGAGCTCGCCATCGACGCGTC
GCGGATGCCGGGAAGCCAGG---GCATCCGGGACTTCCGGCACATGCTCGACGACGCGCACCGCGGCCGCATCAACGCGA
TCATCGAGGAGGAG-------------------AACGCCGCGCCACAAGCAGCGCCGGCGGCGGCG--GCACTAGCGAAG
AAACGCATCACGGAGCAGCTCGCGGTCGACGACAGGCCGCGGCTGGTGATCGTGTCCCGGAACGGGTCGCGCGCGATCGA
GAACGAGTTGGAGCTGGCGCGTGCGGCGGCGAGGGCCGGGTTCCGGGTGACCGTGCTCCGGCCGCGCCCGGACACGGAGC
TCGCGCAGATGTACCGCGTGCTGAACGGCTCGGACGTGATGGTGGGCGTGCACGGCGCGGCCATGACGCACTTCCTCTTC
ATGCGCCCGGGGTCCGCCTTCATCCAGGTGGTGCCGCTCGGGACTGACTGGGCCGCCGAGAACTACTACGGCGAGCCGGC
GCGGCGGCTCGGCCTGCACTACATCCCCTACAAGATCCTGCCGTCCGAGAGCTCGCTGTTCCGGCGATACGCCAGGGACG
ACCCCGTGCTCACCGACCCGGTCGCCGTCAACGCCAAGGGATGGCAGGTCACCAAGAAGGTGTACCTCGACGGGCAGAAC
GTGCGGCTCGACATGGCGCGGTTCCGGCGACGGCTG--------------------------------------------
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>chr1A_1651
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---------------GCGCGCTGCGACGTCCGGCACGACGTCCCCGCCGTCGTCTTCTCCACCGGCGGCTACACCGGCAA
CGTGTACCACGAGTTCAACGACGGCATCATCCCGCTCTACATCACCGCCCGGCGGTACAACAGGAAGGTGGTGTTCGTGA
TGCTCGAGTACCACGACTGGTGGATGACCAAGTACGGCCACATCGTGGAGCAGCTCTCCGACTTCCCGCCCCTCGACTTC
TCCAACGACACCCGCACGCACTGCTTCCCGGAGGCCGTCGTCGGCCTACGCATCCACGACGAGCTCGCCATCGACGCGTC
GCGGATGCCGGGAAACCAGGCCGGCATCCAGGACTTCCGGCACATGCTCGACGACGCGCACCGCGGCCGCATCAACGCCA
TCATCGAGGAGGAG-------------------AACGCCGCGCCACAAGCCTCCCCGGCGGCGGCG--GCACTAGCGAAG
AAACTCGTCACGGAGCAGCTCGCGGACGACGACAAGCCGCGGCTGGTGATCGTGTCCCGGAACGGGTCGCGCGCGATCGA
GAACGAGCCGGAGCTGGCGCGGGAGGCGGCGAGGGCGGGGTTCCGGGTGACAGTGCTCCGGCCTCGCCCGGACACGGAGC
TCGCGCAGATGTACCGCGTCCTGAACGGCTCGGACGTGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTTC
ATGCGCCCGGGGTCGGCCTTCATCCAGGTGGTGCCGCTCGGCACCGACTGGGCCGCCGAGAATTACTACGGCGAGCCGGC
GCGGCGGCTCGGCCTGCACTACATCCCCTACAAGATCCTGCCGTCGGAGAGCTCGCTGTTCCGGCGCTACGCCAGGGACG
ACCCCGTGCTCACCGACCCCGTCGCCGTCAACGCCAAGGGGTGGCAGGTCACCAAGAGGGTGTACCTCGACGGGCAGAAC
GTGCGGCTCGACATGGCGCGGTTCCGG-----------------------------------------------------
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-----------------------------
>SNPs
--------S----S------------------------------S-S---------S-------------------S--S
--------------------------SS-SS-S-SSSS--------S----S-S-------SSSS------S--------
-------SS------------------S----------------SSS--------------S----S------------S
---------------------S----SSS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSS--------------------
----SSSSSSSSS-----S----S---S-------------------------S-------S----S--S----S----S
SS-------S-S----S----------SS-S---S--------S-----------S-----S--S-----S---------
---S-S----------------------------S---S--------------------------S--------------
-------------------------------S---S-S------------------------S-S---------------
----------------------S-------------S--S------------------------------S---------
------------------------S---S--------S-------S----------------------------------
-------------------------------------------------------S-S----S-----------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-SSSS--------------------------------------------------------------
----------------------------------S---------------------------------------------
----------------------------------------------S---------------------------------
------------------------------------------------------------------------S-------
----------------------------------------------SSSSSSSSS--------------S----------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------------------------S---------------------
--------------S-----------------------------------------------------------------
---------------------------------------------S-----------------------------S----
----------------------------------------------------S---------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------S-----------------------
---------------S-----------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-------------------------------------S-----------------------S------------------
--------------------------------------------------------------------------------
---------------------S--S-SSSS-----------------S----------------SSSS------------
---S-------------------------------------S-----S----S-------------------S-------
S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
-----------------------------------------------------S--------------------------
----SSSSSSSSSSSS-----------S-----------------S----------------SS--SSSSS----SS---
------------SS-----------S------------------------------------------------------
----------------S-SSSSSSSSSS------S-----------------------------------S---------
-----------------------------------------------------S--------------------S-----
------SSSS----------------S--------------------------S--------------------------
--S------------------------S--S-----------------------------------------SSSSSS--
--------S---------------------------------------S-SSSSSSSSS------------S--------
--S----------SS------------S--------------------S------------------------S------
-------S---------------S------SSS-----------------------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
------S-------------S--------------------SSS----------S----S--------S-----------
--SSSSS--------------SS---------------SS---------------SS-----------------------
----------S--------------------------------S------------------------------------
--------------SSS----------SS
>forward_278
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------------------ATGTGACACTAGGCGCAACA------------------------------------------
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>reverse_1155
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----------------------------------GGACCAGGAGGAGCTGTCAT--------------------------
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>forward_279
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-------------------TGTGACACTAGGCGCAACAA-----------------------------------------
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>reverse_1980
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-----------------------------------------------------------TGAGCTCACCGTGGACCC---
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-----------------------------
>forward_281
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---------------------TGACACTAGGCGCAACAAGA---------------------------------------
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-----------------------------
>reverse_2598
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-------------------------------------AGGCTGGGACGTGACCAA-------------------------
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-----------------------------
>forward_2217
--------------------------------------------------------------------------------
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-------------------------------------CGAAGCTGGTGATCGTGTCT-----------------------
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-----------------------------
>reverse_3834
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-------------------------------------------------------------------------CAGGCAG
ATCGTTGCTTTGG-------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------
