Multiple sequence alignment - TraesCS2A01G129500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G129500 chr2A 100.000 2400 0 0 1 2400 77526184 77528583 0.000000e+00 4433.0
1 TraesCS2A01G129500 chr2A 94.872 39 2 0 1 39 436384470 436384432 7.160000e-06 62.1
2 TraesCS2A01G129500 chr2B 91.150 1661 79 33 758 2400 118602194 118603804 0.000000e+00 2191.0
3 TraesCS2A01G129500 chr2B 87.267 589 53 14 185 766 118601590 118602163 0.000000e+00 652.0
4 TraesCS2A01G129500 chr2B 97.297 37 1 0 1 37 77901775 77901811 1.990000e-06 63.9
5 TraesCS2A01G129500 chr2D 89.256 1666 89 40 766 2400 76857654 76859260 0.000000e+00 2002.0
6 TraesCS2A01G129500 chr2D 84.988 433 26 14 346 765 76857216 76857622 1.030000e-108 403.0
7 TraesCS2A01G129500 chr2D 80.921 152 29 0 160 311 1664253 1664404 1.170000e-23 121.0
8 TraesCS2A01G129500 chr4A 82.432 148 25 1 164 310 108868644 108868497 6.960000e-26 128.0
9 TraesCS2A01G129500 chr4A 81.081 148 26 2 164 309 710231012 710231159 1.510000e-22 117.0
10 TraesCS2A01G129500 chr3A 81.579 152 27 1 164 314 633846903 633846752 9.010000e-25 124.0
11 TraesCS2A01G129500 chr5A 80.892 157 27 3 170 324 16733192 16733037 1.170000e-23 121.0
12 TraesCS2A01G129500 chr7B 81.295 139 25 1 166 303 527045620 527045482 7.010000e-21 111.0
13 TraesCS2A01G129500 chr7B 97.222 36 1 0 1 36 619102346 619102311 7.160000e-06 62.1
14 TraesCS2A01G129500 chr7B 97.222 36 1 0 1 36 735588416 735588451 7.160000e-06 62.1
15 TraesCS2A01G129500 chr6D 78.846 156 29 3 164 315 160556830 160556985 4.220000e-18 102.0
16 TraesCS2A01G129500 chr3D 77.515 169 36 2 166 332 63859106 63859274 1.520000e-17 100.0
17 TraesCS2A01G129500 chr7A 95.122 41 1 1 1 40 671590 671550 1.990000e-06 63.9
18 TraesCS2A01G129500 chr7A 97.222 36 1 0 1 36 227897857 227897892 7.160000e-06 62.1
19 TraesCS2A01G129500 chr4B 97.222 36 1 0 1 36 83305493 83305458 7.160000e-06 62.1
20 TraesCS2A01G129500 chr1B 97.222 36 1 0 1 36 377839961 377839996 7.160000e-06 62.1
21 TraesCS2A01G129500 chr1B 97.222 36 1 0 1 36 622884495 622884530 7.160000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G129500 chr2A 77526184 77528583 2399 False 4433.0 4433 100.0000 1 2400 1 chr2A.!!$F1 2399
1 TraesCS2A01G129500 chr2B 118601590 118603804 2214 False 1421.5 2191 89.2085 185 2400 2 chr2B.!!$F2 2215
2 TraesCS2A01G129500 chr2D 76857216 76859260 2044 False 1202.5 2002 87.1220 346 2400 2 chr2D.!!$F2 2054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 317 0.034896 GGAAGGAGCCGTTCTTGTCA 59.965 55.0 7.31 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 1498 0.324645 ATCCCATTGCCCAGAACACC 60.325 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.776647 GGTGCGCCGATGCCAAAC 62.777 66.667 4.18 0.00 0.00 2.93
31 32 4.398598 GCGCCGATGCCAAACGTT 62.399 61.111 0.00 0.00 0.00 3.99
32 33 2.254051 CGCCGATGCCAAACGTTT 59.746 55.556 7.96 7.96 0.00 3.60
33 34 1.795962 CGCCGATGCCAAACGTTTC 60.796 57.895 11.37 1.28 0.00 2.78
34 35 1.443702 GCCGATGCCAAACGTTTCC 60.444 57.895 11.37 5.92 0.00 3.13
35 36 1.211709 CCGATGCCAAACGTTTCCC 59.788 57.895 11.37 5.55 0.00 3.97
36 37 1.519751 CCGATGCCAAACGTTTCCCA 61.520 55.000 11.37 11.30 0.00 4.37
37 38 0.312416 CGATGCCAAACGTTTCCCAA 59.688 50.000 11.37 0.00 0.00 4.12
38 39 1.067915 CGATGCCAAACGTTTCCCAAT 60.068 47.619 11.37 2.73 0.00 3.16
39 40 2.336667 GATGCCAAACGTTTCCCAATG 58.663 47.619 11.37 0.00 0.00 2.82
40 41 0.390860 TGCCAAACGTTTCCCAATGG 59.609 50.000 11.37 10.33 0.00 3.16
41 42 0.676736 GCCAAACGTTTCCCAATGGA 59.323 50.000 16.68 0.00 39.54 3.41
52 53 2.379972 TCCCAATGGAAAAACACACGT 58.620 42.857 0.00 0.00 37.86 4.49
53 54 2.359531 TCCCAATGGAAAAACACACGTC 59.640 45.455 0.00 0.00 37.86 4.34
54 55 2.360801 CCCAATGGAAAAACACACGTCT 59.639 45.455 0.00 0.00 0.00 4.18
55 56 3.371168 CCAATGGAAAAACACACGTCTG 58.629 45.455 0.00 0.00 0.00 3.51
56 57 3.371168 CAATGGAAAAACACACGTCTGG 58.629 45.455 0.00 0.00 0.00 3.86
57 58 2.116827 TGGAAAAACACACGTCTGGT 57.883 45.000 0.00 0.00 0.00 4.00
66 67 4.513777 ACGTCTGGTGACTAGGCA 57.486 55.556 0.00 0.00 40.86 4.75
67 68 1.965219 ACGTCTGGTGACTAGGCAC 59.035 57.895 21.25 21.25 40.86 5.01
68 69 0.539901 ACGTCTGGTGACTAGGCACT 60.540 55.000 27.55 4.23 40.86 4.40
69 70 0.171455 CGTCTGGTGACTAGGCACTC 59.829 60.000 27.55 17.84 40.86 3.51
70 71 0.533032 GTCTGGTGACTAGGCACTCC 59.467 60.000 27.55 13.44 39.94 3.85
71 72 0.965866 TCTGGTGACTAGGCACTCCG 60.966 60.000 27.55 15.78 41.75 4.63
72 73 1.228769 TGGTGACTAGGCACTCCGT 60.229 57.895 27.55 0.00 41.75 4.69
73 74 0.830444 TGGTGACTAGGCACTCCGTT 60.830 55.000 27.55 0.00 41.75 4.44
74 75 0.320697 GGTGACTAGGCACTCCGTTT 59.679 55.000 27.55 0.00 41.75 3.60
75 76 1.429463 GTGACTAGGCACTCCGTTTG 58.571 55.000 22.07 0.00 41.75 2.93
76 77 1.045407 TGACTAGGCACTCCGTTTGT 58.955 50.000 0.00 0.00 41.75 2.83
77 78 1.270094 TGACTAGGCACTCCGTTTGTG 60.270 52.381 0.00 0.00 41.75 3.33
78 79 0.756903 ACTAGGCACTCCGTTTGTGT 59.243 50.000 0.00 0.00 41.75 3.72
79 80 1.965643 ACTAGGCACTCCGTTTGTGTA 59.034 47.619 0.00 0.00 41.75 2.90
80 81 2.565834 ACTAGGCACTCCGTTTGTGTAT 59.434 45.455 0.00 0.00 41.75 2.29
81 82 2.561478 AGGCACTCCGTTTGTGTATT 57.439 45.000 0.00 0.00 37.70 1.89
82 83 2.151202 AGGCACTCCGTTTGTGTATTG 58.849 47.619 0.00 0.00 37.70 1.90
83 84 1.199097 GGCACTCCGTTTGTGTATTGG 59.801 52.381 0.00 0.00 37.70 3.16
84 85 1.199097 GCACTCCGTTTGTGTATTGGG 59.801 52.381 0.00 0.00 37.70 4.12
85 86 1.810151 CACTCCGTTTGTGTATTGGGG 59.190 52.381 0.00 0.00 0.00 4.96
86 87 1.271707 ACTCCGTTTGTGTATTGGGGG 60.272 52.381 0.00 0.00 0.00 5.40
113 114 5.398603 CAAATGCTTTGGTATACACCCAA 57.601 39.130 5.01 0.00 45.11 4.12
114 115 5.788450 CAAATGCTTTGGTATACACCCAAA 58.212 37.500 5.01 5.62 46.85 3.28
115 116 5.400066 AATGCTTTGGTATACACCCAAAC 57.600 39.130 5.01 3.06 44.81 2.93
116 117 3.158676 TGCTTTGGTATACACCCAAACC 58.841 45.455 5.01 0.00 44.81 3.27
117 118 3.158676 GCTTTGGTATACACCCAAACCA 58.841 45.455 5.01 0.00 44.81 3.67
121 122 5.986501 TTGGTATACACCCAAACCAAATC 57.013 39.130 5.01 0.00 46.26 2.17
122 123 4.999310 TGGTATACACCCAAACCAAATCA 58.001 39.130 5.01 0.00 45.11 2.57
123 124 5.394738 TGGTATACACCCAAACCAAATCAA 58.605 37.500 5.01 0.00 45.11 2.57
124 125 5.839063 TGGTATACACCCAAACCAAATCAAA 59.161 36.000 5.01 0.00 45.11 2.69
125 126 6.015010 TGGTATACACCCAAACCAAATCAAAG 60.015 38.462 5.01 0.00 45.11 2.77
126 127 6.014925 GGTATACACCCAAACCAAATCAAAGT 60.015 38.462 5.01 0.00 39.11 2.66
127 128 4.835284 ACACCCAAACCAAATCAAAGTT 57.165 36.364 0.00 0.00 0.00 2.66
128 129 5.941555 ACACCCAAACCAAATCAAAGTTA 57.058 34.783 0.00 0.00 0.00 2.24
129 130 5.666462 ACACCCAAACCAAATCAAAGTTAC 58.334 37.500 0.00 0.00 0.00 2.50
130 131 5.423931 ACACCCAAACCAAATCAAAGTTACT 59.576 36.000 0.00 0.00 0.00 2.24
131 132 6.070481 ACACCCAAACCAAATCAAAGTTACTT 60.070 34.615 0.00 0.00 0.00 2.24
132 133 6.821160 CACCCAAACCAAATCAAAGTTACTTT 59.179 34.615 4.30 4.30 33.58 2.66
144 145 5.852282 AAAGTTACTTTGAACCATGCTGT 57.148 34.783 9.77 0.00 31.98 4.40
145 146 5.438761 AAGTTACTTTGAACCATGCTGTC 57.561 39.130 0.00 0.00 0.00 3.51
146 147 3.821033 AGTTACTTTGAACCATGCTGTCC 59.179 43.478 0.00 0.00 0.00 4.02
147 148 1.238439 ACTTTGAACCATGCTGTCCG 58.762 50.000 0.00 0.00 0.00 4.79
148 149 1.202758 ACTTTGAACCATGCTGTCCGA 60.203 47.619 0.00 0.00 0.00 4.55
149 150 1.879380 CTTTGAACCATGCTGTCCGAA 59.121 47.619 0.00 0.00 0.00 4.30
150 151 1.974265 TTGAACCATGCTGTCCGAAA 58.026 45.000 0.00 0.00 0.00 3.46
151 152 2.198827 TGAACCATGCTGTCCGAAAT 57.801 45.000 0.00 0.00 0.00 2.17
152 153 3.342377 TGAACCATGCTGTCCGAAATA 57.658 42.857 0.00 0.00 0.00 1.40
153 154 3.884895 TGAACCATGCTGTCCGAAATAT 58.115 40.909 0.00 0.00 0.00 1.28
154 155 5.029807 TGAACCATGCTGTCCGAAATATA 57.970 39.130 0.00 0.00 0.00 0.86
155 156 5.432645 TGAACCATGCTGTCCGAAATATAA 58.567 37.500 0.00 0.00 0.00 0.98
156 157 5.883115 TGAACCATGCTGTCCGAAATATAAA 59.117 36.000 0.00 0.00 0.00 1.40
157 158 6.545666 TGAACCATGCTGTCCGAAATATAAAT 59.454 34.615 0.00 0.00 0.00 1.40
158 159 7.717436 TGAACCATGCTGTCCGAAATATAAATA 59.283 33.333 0.00 0.00 0.00 1.40
159 160 8.635765 AACCATGCTGTCCGAAATATAAATAT 57.364 30.769 0.00 0.00 0.00 1.28
160 161 8.635765 ACCATGCTGTCCGAAATATAAATATT 57.364 30.769 0.00 0.00 34.59 1.28
161 162 8.514594 ACCATGCTGTCCGAAATATAAATATTG 58.485 33.333 0.00 0.00 33.51 1.90
162 163 8.514594 CCATGCTGTCCGAAATATAAATATTGT 58.485 33.333 0.00 0.00 33.51 2.71
163 164 9.333497 CATGCTGTCCGAAATATAAATATTGTG 57.667 33.333 0.00 0.00 33.51 3.33
164 165 8.445275 TGCTGTCCGAAATATAAATATTGTGT 57.555 30.769 0.00 0.00 33.51 3.72
165 166 8.341903 TGCTGTCCGAAATATAAATATTGTGTG 58.658 33.333 0.00 0.00 33.51 3.82
166 167 8.556194 GCTGTCCGAAATATAAATATTGTGTGA 58.444 33.333 0.00 0.00 33.51 3.58
169 170 9.659830 GTCCGAAATATAAATATTGTGTGAACC 57.340 33.333 0.00 0.00 33.51 3.62
170 171 9.397280 TCCGAAATATAAATATTGTGTGAACCA 57.603 29.630 0.00 0.00 33.51 3.67
206 207 2.077687 TTAGGAGGACGGTGGTATCC 57.922 55.000 0.00 0.00 34.01 2.59
219 221 1.843851 TGGTATCCCAGCTTGTTAGGG 59.156 52.381 0.00 0.00 44.22 3.53
221 223 2.241430 GGTATCCCAGCTTGTTAGGGTT 59.759 50.000 5.99 0.95 43.31 4.11
233 235 5.479124 TTGTTAGGGTTCAAGTCCTAGAC 57.521 43.478 0.00 0.00 37.01 2.59
234 236 4.748701 TGTTAGGGTTCAAGTCCTAGACT 58.251 43.478 0.00 0.00 45.64 3.24
260 262 0.516877 CGGTGCTCGCATTTTTCTGA 59.483 50.000 0.00 0.00 0.00 3.27
271 273 8.434661 GCTCGCATTTTTCTGAATTTATTTCAA 58.565 29.630 0.00 0.00 43.64 2.69
274 276 9.029123 CGCATTTTTCTGAATTTATTTCAAACG 57.971 29.630 0.00 0.00 43.64 3.60
279 281 7.845617 TTCTGAATTTATTTCAAACGTTCCG 57.154 32.000 0.00 0.00 43.64 4.30
301 303 1.938577 CGATGTGCATTCAGAGGAAGG 59.061 52.381 0.00 0.00 37.84 3.46
304 306 1.339438 TGTGCATTCAGAGGAAGGAGC 60.339 52.381 0.00 0.00 36.97 4.70
309 311 0.608640 TTCAGAGGAAGGAGCCGTTC 59.391 55.000 0.00 0.00 0.00 3.95
311 313 0.610687 CAGAGGAAGGAGCCGTTCTT 59.389 55.000 7.31 1.31 0.00 2.52
315 317 0.034896 GGAAGGAGCCGTTCTTGTCA 59.965 55.000 7.31 0.00 0.00 3.58
318 320 0.468226 AGGAGCCGTTCTTGTCAACA 59.532 50.000 0.00 0.00 0.00 3.33
328 331 4.509970 CGTTCTTGTCAACATGAAGGTGTA 59.490 41.667 16.87 0.00 39.61 2.90
380 384 6.999705 TCTACTACCAAAAGAGTAAACCCA 57.000 37.500 0.00 0.00 0.00 4.51
437 452 6.983474 AAAAACAAAGTAATGCACAAAGCT 57.017 29.167 0.00 0.00 45.94 3.74
438 453 6.983474 AAAACAAAGTAATGCACAAAGCTT 57.017 29.167 0.00 0.00 45.94 3.74
439 454 6.588348 AAACAAAGTAATGCACAAAGCTTC 57.412 33.333 0.00 0.00 45.94 3.86
468 483 5.304778 TCTAGAACAATGCACAAAGCTACA 58.695 37.500 0.00 0.00 45.94 2.74
469 484 4.494350 AGAACAATGCACAAAGCTACAG 57.506 40.909 0.00 0.00 45.94 2.74
470 485 3.885297 AGAACAATGCACAAAGCTACAGT 59.115 39.130 0.00 0.00 45.94 3.55
634 653 0.865111 TGCGTCACATGAAAGAACGG 59.135 50.000 0.00 0.00 0.00 4.44
637 656 2.661979 GCGTCACATGAAAGAACGGAAC 60.662 50.000 0.00 0.00 0.00 3.62
646 665 1.037493 AAGAACGGAACCAAAAGGCC 58.963 50.000 0.00 0.00 0.00 5.19
647 666 0.826256 AGAACGGAACCAAAAGGCCC 60.826 55.000 0.00 0.00 0.00 5.80
648 667 1.075896 AACGGAACCAAAAGGCCCA 60.076 52.632 0.00 0.00 0.00 5.36
649 668 0.471022 AACGGAACCAAAAGGCCCAT 60.471 50.000 0.00 0.00 0.00 4.00
650 669 1.184970 ACGGAACCAAAAGGCCCATG 61.185 55.000 0.00 0.00 0.00 3.66
651 670 0.897863 CGGAACCAAAAGGCCCATGA 60.898 55.000 0.00 0.00 0.00 3.07
674 693 7.272978 TGACCATAACTTCTAAATCTGCCTAC 58.727 38.462 0.00 0.00 0.00 3.18
691 711 1.198637 CTACTCACAAAAGGCAGCAGC 59.801 52.381 0.00 0.00 41.10 5.25
743 763 0.469917 CCCTGTCCTAATCATGCGGT 59.530 55.000 0.00 0.00 0.00 5.68
796 859 1.970352 GCAGCAAGAGGGAGGGAGAG 61.970 65.000 0.00 0.00 0.00 3.20
797 860 0.325110 CAGCAAGAGGGAGGGAGAGA 60.325 60.000 0.00 0.00 0.00 3.10
838 901 0.194587 CCCATCCCCACTATCTCCCT 59.805 60.000 0.00 0.00 0.00 4.20
840 903 1.150986 CCATCCCCACTATCTCCCTCT 59.849 57.143 0.00 0.00 0.00 3.69
843 906 0.178918 CCCCACTATCTCCCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
844 907 0.563173 CCCACTATCTCCCTCTCCCA 59.437 60.000 0.00 0.00 0.00 4.37
845 908 1.710816 CCACTATCTCCCTCTCCCAC 58.289 60.000 0.00 0.00 0.00 4.61
847 910 0.563672 ACTATCTCCCTCTCCCACCC 59.436 60.000 0.00 0.00 0.00 4.61
849 912 0.934302 TATCTCCCTCTCCCACCCCA 60.934 60.000 0.00 0.00 0.00 4.96
850 913 2.553438 ATCTCCCTCTCCCACCCCAC 62.553 65.000 0.00 0.00 0.00 4.61
851 914 3.537506 TCCCTCTCCCACCCCACA 61.538 66.667 0.00 0.00 0.00 4.17
852 915 3.330720 CCCTCTCCCACCCCACAC 61.331 72.222 0.00 0.00 0.00 3.82
853 916 3.706373 CCTCTCCCACCCCACACG 61.706 72.222 0.00 0.00 0.00 4.49
854 917 4.394712 CTCTCCCACCCCACACGC 62.395 72.222 0.00 0.00 0.00 5.34
894 957 3.305516 CACCTTGCCCTGCAACCC 61.306 66.667 0.00 0.00 43.99 4.11
900 963 3.994853 GCCCTGCAACCCAGCAAC 61.995 66.667 0.00 0.00 45.13 4.17
903 966 2.126596 CCTGCAACCCAGCAACACA 61.127 57.895 0.00 0.00 45.13 3.72
918 981 1.053424 ACACACAACGTCCCACCTAT 58.947 50.000 0.00 0.00 0.00 2.57
919 982 1.001633 ACACACAACGTCCCACCTATC 59.998 52.381 0.00 0.00 0.00 2.08
920 983 1.275291 CACACAACGTCCCACCTATCT 59.725 52.381 0.00 0.00 0.00 1.98
921 984 1.549170 ACACAACGTCCCACCTATCTC 59.451 52.381 0.00 0.00 0.00 2.75
922 985 1.548719 CACAACGTCCCACCTATCTCA 59.451 52.381 0.00 0.00 0.00 3.27
923 986 1.549170 ACAACGTCCCACCTATCTCAC 59.451 52.381 0.00 0.00 0.00 3.51
924 987 1.134788 CAACGTCCCACCTATCTCACC 60.135 57.143 0.00 0.00 0.00 4.02
925 988 0.335361 ACGTCCCACCTATCTCACCT 59.665 55.000 0.00 0.00 0.00 4.00
926 989 1.033574 CGTCCCACCTATCTCACCTC 58.966 60.000 0.00 0.00 0.00 3.85
927 990 1.685180 CGTCCCACCTATCTCACCTCA 60.685 57.143 0.00 0.00 0.00 3.86
928 991 2.683768 GTCCCACCTATCTCACCTCAT 58.316 52.381 0.00 0.00 0.00 2.90
929 992 2.630580 GTCCCACCTATCTCACCTCATC 59.369 54.545 0.00 0.00 0.00 2.92
997 1062 1.583967 GTCCGTCTCGATCAGCACG 60.584 63.158 0.00 0.00 0.00 5.34
1119 1190 3.118454 GTGGTGCCGATGGACGTG 61.118 66.667 0.00 0.00 40.78 4.49
1315 1392 1.312815 AACTGCAAGCTGTTGAGACC 58.687 50.000 15.10 0.00 37.60 3.85
1345 1425 4.754114 AGAGTTGAGTCAGATGTTTTGCTC 59.246 41.667 0.00 0.00 0.00 4.26
1352 1432 5.526115 AGTCAGATGTTTTGCTCATGTTTG 58.474 37.500 0.00 0.00 0.00 2.93
1406 1486 1.798234 TTGCTGCTGGTGACATGCAC 61.798 55.000 10.63 10.63 46.98 4.57
1418 1498 1.216977 CATGCACCACTGCCCATTG 59.783 57.895 0.00 0.00 43.51 2.82
1424 1504 0.827507 ACCACTGCCCATTGGTGTTC 60.828 55.000 9.21 0.00 41.96 3.18
1425 1505 0.540365 CCACTGCCCATTGGTGTTCT 60.540 55.000 1.20 0.00 0.00 3.01
1433 1513 1.066716 CCATTGGTGTTCTGGGCAATG 60.067 52.381 0.00 0.00 0.00 2.82
1436 1516 1.076549 GGTGTTCTGGGCAATGGGA 59.923 57.895 0.00 0.00 0.00 4.37
1437 1517 0.324645 GGTGTTCTGGGCAATGGGAT 60.325 55.000 0.00 0.00 0.00 3.85
1438 1518 1.106285 GTGTTCTGGGCAATGGGATC 58.894 55.000 0.00 0.00 0.00 3.36
1439 1519 0.703488 TGTTCTGGGCAATGGGATCA 59.297 50.000 0.00 0.00 0.00 2.92
1491 1573 5.456548 TGCTAATCGATGTATTTACGGGA 57.543 39.130 0.00 0.00 0.00 5.14
1493 1575 6.282167 TGCTAATCGATGTATTTACGGGAAA 58.718 36.000 0.00 0.00 0.00 3.13
1629 1717 2.004583 TAAGCAGGTCATACGTGTGC 57.995 50.000 7.52 2.96 36.45 4.57
1680 1772 4.483683 CGACGGCGTTCATGCACG 62.484 66.667 16.19 13.75 43.36 5.34
1681 1773 4.147322 GACGGCGTTCATGCACGG 62.147 66.667 19.22 6.33 40.69 4.94
1755 1856 4.037021 GTGTTGTAAAAAGCGGTGGTAAC 58.963 43.478 0.00 0.00 0.00 2.50
1756 1857 3.946558 TGTTGTAAAAAGCGGTGGTAACT 59.053 39.130 0.00 0.00 37.61 2.24
1762 1863 2.561478 AAGCGGTGGTAACTGTTGAT 57.439 45.000 2.69 0.00 34.90 2.57
1858 1959 5.330233 TGTACTCAGACTCCCAGTTAATGA 58.670 41.667 0.00 0.00 0.00 2.57
1859 1960 5.419155 TGTACTCAGACTCCCAGTTAATGAG 59.581 44.000 10.55 10.55 38.46 2.90
1863 1964 2.093235 AGACTCCCAGTTAATGAGCTGC 60.093 50.000 0.00 0.00 0.00 5.25
2011 2118 5.649782 AACATCCTTTTTCTATGCACTGG 57.350 39.130 0.00 0.00 0.00 4.00
2101 2208 6.016610 GGAAACAACAGCAGTAAATTACCAGA 60.017 38.462 0.00 0.00 0.00 3.86
2137 2244 2.636893 CAATCCCACAGCCTAGCTCTAT 59.363 50.000 0.00 0.00 36.40 1.98
2172 2279 1.177401 GCAGTTTCATGGGGACTTCC 58.823 55.000 0.00 0.00 0.00 3.46
2277 2384 1.903183 ACTAGAGCAGGTGTTCCTTCC 59.097 52.381 0.00 0.00 43.07 3.46
2280 2387 0.322008 GAGCAGGTGTTCCTTCCAGG 60.322 60.000 0.00 0.00 43.07 4.45
2292 2399 0.107654 CTTCCAGGGCCTCTTTACCG 60.108 60.000 0.95 0.00 0.00 4.02
2295 2402 1.683441 CAGGGCCTCTTTACCGGTT 59.317 57.895 15.04 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.776647 GTTTGGCATCGGCGCACC 62.777 66.667 10.83 3.57 42.47 5.01
14 15 3.889831 AAACGTTTGGCATCGGCGC 62.890 57.895 13.81 0.00 42.47 6.53
15 16 1.795962 GAAACGTTTGGCATCGGCG 60.796 57.895 20.10 0.00 42.47 6.46
16 17 1.443702 GGAAACGTTTGGCATCGGC 60.444 57.895 20.10 0.57 40.13 5.54
17 18 1.211709 GGGAAACGTTTGGCATCGG 59.788 57.895 20.10 0.00 0.00 4.18
18 19 0.312416 TTGGGAAACGTTTGGCATCG 59.688 50.000 20.10 10.22 0.00 3.84
19 20 2.336667 CATTGGGAAACGTTTGGCATC 58.663 47.619 20.10 2.98 0.00 3.91
20 21 1.001860 CCATTGGGAAACGTTTGGCAT 59.998 47.619 20.10 2.09 35.59 4.40
21 22 0.390860 CCATTGGGAAACGTTTGGCA 59.609 50.000 20.10 0.00 35.59 4.92
22 23 0.676736 TCCATTGGGAAACGTTTGGC 59.323 50.000 20.10 4.58 41.32 4.52
32 33 2.359531 GACGTGTGTTTTTCCATTGGGA 59.640 45.455 2.09 0.00 43.03 4.37
33 34 2.360801 AGACGTGTGTTTTTCCATTGGG 59.639 45.455 2.09 0.00 0.00 4.12
34 35 3.371168 CAGACGTGTGTTTTTCCATTGG 58.629 45.455 4.19 0.00 0.00 3.16
35 36 3.181491 ACCAGACGTGTGTTTTTCCATTG 60.181 43.478 12.16 0.00 0.00 2.82
36 37 3.020984 ACCAGACGTGTGTTTTTCCATT 58.979 40.909 12.16 0.00 0.00 3.16
37 38 2.357637 CACCAGACGTGTGTTTTTCCAT 59.642 45.455 12.16 0.00 37.73 3.41
38 39 1.740585 CACCAGACGTGTGTTTTTCCA 59.259 47.619 12.16 0.00 37.73 3.53
39 40 2.011222 TCACCAGACGTGTGTTTTTCC 58.989 47.619 12.16 0.00 43.51 3.13
40 41 3.047613 GTCACCAGACGTGTGTTTTTC 57.952 47.619 12.16 0.00 43.51 2.29
51 52 0.533032 GGAGTGCCTAGTCACCAGAC 59.467 60.000 0.00 0.00 45.31 3.51
52 53 0.965866 CGGAGTGCCTAGTCACCAGA 60.966 60.000 0.00 0.00 37.68 3.86
53 54 1.251527 ACGGAGTGCCTAGTCACCAG 61.252 60.000 0.00 0.00 42.51 4.00
54 55 0.830444 AACGGAGTGCCTAGTCACCA 60.830 55.000 0.00 0.00 45.00 4.17
55 56 0.320697 AAACGGAGTGCCTAGTCACC 59.679 55.000 0.00 0.00 45.00 4.02
56 57 1.270147 ACAAACGGAGTGCCTAGTCAC 60.270 52.381 0.00 0.00 45.00 3.67
57 58 1.045407 ACAAACGGAGTGCCTAGTCA 58.955 50.000 0.00 0.00 45.00 3.41
58 59 1.270147 ACACAAACGGAGTGCCTAGTC 60.270 52.381 4.38 0.00 45.00 2.59
59 60 0.756903 ACACAAACGGAGTGCCTAGT 59.243 50.000 4.38 0.00 45.00 2.57
60 61 2.736144 TACACAAACGGAGTGCCTAG 57.264 50.000 4.38 0.00 45.00 3.02
61 62 3.331150 CAATACACAAACGGAGTGCCTA 58.669 45.455 4.38 0.00 45.00 3.93
62 63 2.151202 CAATACACAAACGGAGTGCCT 58.849 47.619 4.38 0.00 45.00 4.75
63 64 1.199097 CCAATACACAAACGGAGTGCC 59.801 52.381 4.38 0.00 45.00 5.01
64 65 1.199097 CCCAATACACAAACGGAGTGC 59.801 52.381 4.38 0.00 45.00 4.40
65 66 1.810151 CCCCAATACACAAACGGAGTG 59.190 52.381 3.11 3.11 45.00 3.51
67 68 1.459450 CCCCCAATACACAAACGGAG 58.541 55.000 0.00 0.00 0.00 4.63
68 69 3.654517 CCCCCAATACACAAACGGA 57.345 52.632 0.00 0.00 0.00 4.69
101 102 5.986501 TTGATTTGGTTTGGGTGTATACC 57.013 39.130 0.00 0.00 46.76 2.73
102 103 6.988522 ACTTTGATTTGGTTTGGGTGTATAC 58.011 36.000 0.00 0.00 0.00 1.47
103 104 7.604657 AACTTTGATTTGGTTTGGGTGTATA 57.395 32.000 0.00 0.00 0.00 1.47
104 105 6.493189 AACTTTGATTTGGTTTGGGTGTAT 57.507 33.333 0.00 0.00 0.00 2.29
105 106 5.941555 AACTTTGATTTGGTTTGGGTGTA 57.058 34.783 0.00 0.00 0.00 2.90
106 107 4.835284 AACTTTGATTTGGTTTGGGTGT 57.165 36.364 0.00 0.00 0.00 4.16
107 108 5.912892 AGTAACTTTGATTTGGTTTGGGTG 58.087 37.500 0.00 0.00 0.00 4.61
108 109 6.553953 AAGTAACTTTGATTTGGTTTGGGT 57.446 33.333 0.00 0.00 0.00 4.51
121 122 5.591099 ACAGCATGGTTCAAAGTAACTTTG 58.409 37.500 0.00 0.00 45.74 2.77
122 123 5.221244 GGACAGCATGGTTCAAAGTAACTTT 60.221 40.000 0.00 0.00 43.62 2.66
123 124 4.278419 GGACAGCATGGTTCAAAGTAACTT 59.722 41.667 0.00 0.00 43.62 2.66
124 125 3.821033 GGACAGCATGGTTCAAAGTAACT 59.179 43.478 0.00 0.00 43.62 2.24
125 126 3.364964 CGGACAGCATGGTTCAAAGTAAC 60.365 47.826 0.00 0.00 43.62 2.50
126 127 2.811431 CGGACAGCATGGTTCAAAGTAA 59.189 45.455 0.00 0.00 43.62 2.24
127 128 2.037902 TCGGACAGCATGGTTCAAAGTA 59.962 45.455 0.00 0.00 43.62 2.24
128 129 1.202758 TCGGACAGCATGGTTCAAAGT 60.203 47.619 0.00 0.00 43.62 2.66
129 130 1.522668 TCGGACAGCATGGTTCAAAG 58.477 50.000 0.00 0.00 43.62 2.77
130 131 1.974265 TTCGGACAGCATGGTTCAAA 58.026 45.000 0.00 0.00 43.62 2.69
131 132 1.974265 TTTCGGACAGCATGGTTCAA 58.026 45.000 0.00 0.00 43.62 2.69
132 133 2.198827 ATTTCGGACAGCATGGTTCA 57.801 45.000 0.00 0.00 43.62 3.18
133 134 6.371809 TTTATATTTCGGACAGCATGGTTC 57.628 37.500 0.00 0.00 43.62 3.62
134 135 6.959639 ATTTATATTTCGGACAGCATGGTT 57.040 33.333 0.00 0.00 43.62 3.67
135 136 8.514594 CAATATTTATATTTCGGACAGCATGGT 58.485 33.333 0.00 0.00 33.36 3.55
136 137 8.514594 ACAATATTTATATTTCGGACAGCATGG 58.485 33.333 0.00 0.00 33.36 3.66
137 138 9.333497 CACAATATTTATATTTCGGACAGCATG 57.667 33.333 0.00 0.00 34.61 4.06
138 139 9.066892 ACACAATATTTATATTTCGGACAGCAT 57.933 29.630 0.00 0.00 30.91 3.79
139 140 8.341903 CACACAATATTTATATTTCGGACAGCA 58.658 33.333 0.00 0.00 30.91 4.41
140 141 8.556194 TCACACAATATTTATATTTCGGACAGC 58.444 33.333 0.00 0.00 30.91 4.40
143 144 9.659830 GGTTCACACAATATTTATATTTCGGAC 57.340 33.333 0.00 0.00 30.91 4.79
144 145 9.397280 TGGTTCACACAATATTTATATTTCGGA 57.603 29.630 0.00 0.00 30.91 4.55
152 153 8.469200 CCACAGATTGGTTCACACAATATTTAT 58.531 33.333 0.00 0.00 41.10 1.40
153 154 7.825681 CCACAGATTGGTTCACACAATATTTA 58.174 34.615 0.00 0.00 41.10 1.40
154 155 6.690530 CCACAGATTGGTTCACACAATATTT 58.309 36.000 0.00 0.00 41.10 1.40
155 156 6.271488 CCACAGATTGGTTCACACAATATT 57.729 37.500 0.00 0.00 41.10 1.28
156 157 5.902613 CCACAGATTGGTTCACACAATAT 57.097 39.130 0.00 0.00 41.10 1.28
169 170 7.775093 TCCTCCTAATCATTTAACCACAGATTG 59.225 37.037 0.00 0.00 31.89 2.67
170 171 7.775561 GTCCTCCTAATCATTTAACCACAGATT 59.224 37.037 0.00 0.00 33.82 2.40
171 172 7.283329 GTCCTCCTAATCATTTAACCACAGAT 58.717 38.462 0.00 0.00 0.00 2.90
172 173 6.629515 CGTCCTCCTAATCATTTAACCACAGA 60.630 42.308 0.00 0.00 0.00 3.41
173 174 5.523916 CGTCCTCCTAATCATTTAACCACAG 59.476 44.000 0.00 0.00 0.00 3.66
174 175 5.424757 CGTCCTCCTAATCATTTAACCACA 58.575 41.667 0.00 0.00 0.00 4.17
175 176 4.814771 CCGTCCTCCTAATCATTTAACCAC 59.185 45.833 0.00 0.00 0.00 4.16
176 177 4.472108 ACCGTCCTCCTAATCATTTAACCA 59.528 41.667 0.00 0.00 0.00 3.67
177 178 4.814771 CACCGTCCTCCTAATCATTTAACC 59.185 45.833 0.00 0.00 0.00 2.85
178 179 4.814771 CCACCGTCCTCCTAATCATTTAAC 59.185 45.833 0.00 0.00 0.00 2.01
179 180 4.472108 ACCACCGTCCTCCTAATCATTTAA 59.528 41.667 0.00 0.00 0.00 1.52
180 181 4.035112 ACCACCGTCCTCCTAATCATTTA 58.965 43.478 0.00 0.00 0.00 1.40
181 182 2.844348 ACCACCGTCCTCCTAATCATTT 59.156 45.455 0.00 0.00 0.00 2.32
182 183 2.478292 ACCACCGTCCTCCTAATCATT 58.522 47.619 0.00 0.00 0.00 2.57
183 184 2.176247 ACCACCGTCCTCCTAATCAT 57.824 50.000 0.00 0.00 0.00 2.45
184 185 2.832643 TACCACCGTCCTCCTAATCA 57.167 50.000 0.00 0.00 0.00 2.57
185 186 2.561858 GGATACCACCGTCCTCCTAATC 59.438 54.545 0.00 0.00 0.00 1.75
186 187 2.606378 GGATACCACCGTCCTCCTAAT 58.394 52.381 0.00 0.00 0.00 1.73
206 207 2.814336 GACTTGAACCCTAACAAGCTGG 59.186 50.000 0.00 0.00 44.75 4.85
211 213 5.152934 AGTCTAGGACTTGAACCCTAACAA 58.847 41.667 0.00 0.00 40.28 2.83
212 214 4.748701 AGTCTAGGACTTGAACCCTAACA 58.251 43.478 0.00 0.00 40.28 2.41
239 241 1.801512 GAAAAATGCGAGCACCGGC 60.802 57.895 0.00 0.00 39.04 6.13
274 276 1.062525 GAATGCACATCGCCGGAAC 59.937 57.895 5.05 0.00 41.33 3.62
277 279 1.769098 CTCTGAATGCACATCGCCGG 61.769 60.000 0.00 0.00 41.33 6.13
278 280 1.640069 CTCTGAATGCACATCGCCG 59.360 57.895 0.00 0.00 41.33 6.46
279 281 0.462581 TCCTCTGAATGCACATCGCC 60.463 55.000 0.00 0.00 41.33 5.54
295 297 0.321996 GACAAGAACGGCTCCTTCCT 59.678 55.000 0.00 0.00 0.00 3.36
301 303 2.143122 TCATGTTGACAAGAACGGCTC 58.857 47.619 0.00 0.00 0.00 4.70
304 306 2.878406 ACCTTCATGTTGACAAGAACGG 59.122 45.455 12.06 12.06 31.36 4.44
309 311 4.669965 CGCATACACCTTCATGTTGACAAG 60.670 45.833 0.00 0.00 33.85 3.16
311 313 2.741517 CGCATACACCTTCATGTTGACA 59.258 45.455 0.00 0.00 33.85 3.58
315 317 1.094785 GGCGCATACACCTTCATGTT 58.905 50.000 10.83 0.00 33.85 2.71
318 320 1.097547 GCAGGCGCATACACCTTCAT 61.098 55.000 10.83 0.00 38.36 2.57
358 362 8.454570 TTTTGGGTTTACTCTTTTGGTAGTAG 57.545 34.615 0.00 0.00 30.27 2.57
446 461 5.180117 ACTGTAGCTTTGTGCATTGTTCTAG 59.820 40.000 0.00 0.00 45.94 2.43
468 483 1.906990 ACGGCTCGCTGGTATATACT 58.093 50.000 12.54 0.00 0.00 2.12
469 484 2.719426 AACGGCTCGCTGGTATATAC 57.281 50.000 4.14 4.14 0.00 1.47
470 485 3.738830 AAAACGGCTCGCTGGTATATA 57.261 42.857 2.45 0.00 0.00 0.86
601 619 1.970917 GACGCATCGCTGTGAAAGGG 61.971 60.000 6.84 2.52 40.19 3.95
602 620 1.291184 TGACGCATCGCTGTGAAAGG 61.291 55.000 6.84 0.00 36.69 3.11
603 621 0.179240 GTGACGCATCGCTGTGAAAG 60.179 55.000 6.84 0.00 36.69 2.62
605 623 0.670239 ATGTGACGCATCGCTGTGAA 60.670 50.000 6.84 0.00 36.24 3.18
634 653 0.608130 GGTCATGGGCCTTTTGGTTC 59.392 55.000 4.53 0.00 42.99 3.62
637 656 2.157640 TATGGTCATGGGCCTTTTGG 57.842 50.000 4.53 0.00 44.18 3.28
646 665 6.016777 GGCAGATTTAGAAGTTATGGTCATGG 60.017 42.308 0.00 0.00 0.00 3.66
647 666 6.769822 AGGCAGATTTAGAAGTTATGGTCATG 59.230 38.462 0.00 0.00 0.00 3.07
648 667 6.904626 AGGCAGATTTAGAAGTTATGGTCAT 58.095 36.000 0.00 0.00 0.00 3.06
649 668 6.313519 AGGCAGATTTAGAAGTTATGGTCA 57.686 37.500 0.00 0.00 0.00 4.02
650 669 7.501844 AGTAGGCAGATTTAGAAGTTATGGTC 58.498 38.462 0.00 0.00 0.00 4.02
651 670 7.125811 TGAGTAGGCAGATTTAGAAGTTATGGT 59.874 37.037 0.00 0.00 0.00 3.55
674 693 0.039437 CTGCTGCTGCCTTTTGTGAG 60.039 55.000 13.47 0.00 38.71 3.51
691 711 0.517316 GTTGCAGGTCCGTTTAGCTG 59.483 55.000 0.00 0.00 45.62 4.24
743 763 2.885164 CGTGGTCGATGCGCATGA 60.885 61.111 30.76 21.55 39.71 3.07
791 854 2.101750 GGAACGGGAAGAATCTCTCTCC 59.898 54.545 0.00 0.00 31.02 3.71
796 859 1.831736 TGAGGGAACGGGAAGAATCTC 59.168 52.381 0.00 0.00 0.00 2.75
797 860 1.555533 GTGAGGGAACGGGAAGAATCT 59.444 52.381 0.00 0.00 0.00 2.40
894 957 1.355210 GGGACGTTGTGTGTTGCTG 59.645 57.895 0.00 0.00 0.00 4.41
900 963 1.275291 AGATAGGTGGGACGTTGTGTG 59.725 52.381 0.00 0.00 0.00 3.82
903 966 1.549170 GTGAGATAGGTGGGACGTTGT 59.451 52.381 0.00 0.00 0.00 3.32
918 981 3.205282 TGGATAGGTGAGATGAGGTGAGA 59.795 47.826 0.00 0.00 0.00 3.27
919 982 3.570540 TGGATAGGTGAGATGAGGTGAG 58.429 50.000 0.00 0.00 0.00 3.51
920 983 3.688049 TGGATAGGTGAGATGAGGTGA 57.312 47.619 0.00 0.00 0.00 4.02
921 984 3.260380 GGATGGATAGGTGAGATGAGGTG 59.740 52.174 0.00 0.00 0.00 4.00
922 985 3.116590 TGGATGGATAGGTGAGATGAGGT 60.117 47.826 0.00 0.00 0.00 3.85
923 986 3.514539 TGGATGGATAGGTGAGATGAGG 58.485 50.000 0.00 0.00 0.00 3.86
924 987 5.557576 TTTGGATGGATAGGTGAGATGAG 57.442 43.478 0.00 0.00 0.00 2.90
925 988 5.974156 TTTTGGATGGATAGGTGAGATGA 57.026 39.130 0.00 0.00 0.00 2.92
926 989 5.887598 TGTTTTTGGATGGATAGGTGAGATG 59.112 40.000 0.00 0.00 0.00 2.90
927 990 6.078456 TGTTTTTGGATGGATAGGTGAGAT 57.922 37.500 0.00 0.00 0.00 2.75
928 991 5.512942 TGTTTTTGGATGGATAGGTGAGA 57.487 39.130 0.00 0.00 0.00 3.27
929 992 5.300286 GGATGTTTTTGGATGGATAGGTGAG 59.700 44.000 0.00 0.00 0.00 3.51
1119 1190 4.154347 CCCAGCAGCTCCTCGGAC 62.154 72.222 0.00 0.00 0.00 4.79
1267 1338 1.909986 ACTAACCTTCCTTCTCCAGCC 59.090 52.381 0.00 0.00 0.00 4.85
1315 1392 1.891811 TCTGACTCAACTCTCAGCCAG 59.108 52.381 0.00 0.00 34.92 4.85
1368 1448 4.401202 AGCAAAACATCTGCATCATCATCA 59.599 37.500 0.00 0.00 42.48 3.07
1369 1449 4.740205 CAGCAAAACATCTGCATCATCATC 59.260 41.667 0.00 0.00 42.48 2.92
1370 1450 4.682787 CAGCAAAACATCTGCATCATCAT 58.317 39.130 0.00 0.00 42.48 2.45
1409 1489 1.252904 CCCAGAACACCAATGGGCAG 61.253 60.000 3.55 0.00 46.86 4.85
1410 1490 1.228831 CCCAGAACACCAATGGGCA 60.229 57.895 3.55 0.00 46.86 5.36
1411 1491 3.698765 CCCAGAACACCAATGGGC 58.301 61.111 3.55 0.00 46.86 5.36
1418 1498 0.324645 ATCCCATTGCCCAGAACACC 60.325 55.000 0.00 0.00 0.00 4.16
1424 1504 4.849813 TCTATATGATCCCATTGCCCAG 57.150 45.455 0.00 0.00 34.31 4.45
1425 1505 5.378230 GATCTATATGATCCCATTGCCCA 57.622 43.478 0.00 0.00 44.34 5.36
1436 1516 8.538701 CCTAAACTGCAGAAGGATCTATATGAT 58.461 37.037 23.35 0.00 38.27 2.45
1437 1517 7.038729 CCCTAAACTGCAGAAGGATCTATATGA 60.039 40.741 23.35 0.00 33.50 2.15
1438 1518 7.038729 TCCCTAAACTGCAGAAGGATCTATATG 60.039 40.741 23.35 8.38 33.50 1.78
1439 1519 7.019388 TCCCTAAACTGCAGAAGGATCTATAT 58.981 38.462 23.35 0.00 33.50 0.86
1570 1652 1.982073 CTCGAGGGTGAAAATGGCGC 61.982 60.000 3.91 0.00 0.00 6.53
1612 1700 0.390340 CTGCACACGTATGACCTGCT 60.390 55.000 0.00 0.00 0.00 4.24
1623 1711 1.577328 GGTGGGATCAACTGCACACG 61.577 60.000 0.00 0.00 0.00 4.49
1680 1772 3.365265 CAGCAAGGGAACGGTGCC 61.365 66.667 1.00 1.00 44.41 5.01
1681 1773 2.281484 TCAGCAAGGGAACGGTGC 60.281 61.111 0.00 0.00 43.89 5.01
1682 1774 1.672356 CCTCAGCAAGGGAACGGTG 60.672 63.158 0.00 0.00 42.03 4.94
1683 1775 2.750350 CCTCAGCAAGGGAACGGT 59.250 61.111 0.00 0.00 42.03 4.83
1762 1863 7.286775 AGCCTCCTTTCAAAATACAGTAAAACA 59.713 33.333 0.00 0.00 0.00 2.83
1858 1959 1.405872 CCTCAGATCTCAGAGCAGCT 58.594 55.000 0.00 0.00 0.00 4.24
1859 1960 0.390124 CCCTCAGATCTCAGAGCAGC 59.610 60.000 0.00 0.00 0.00 5.25
1863 1964 4.952071 TTAATGCCCTCAGATCTCAGAG 57.048 45.455 0.00 0.00 0.00 3.35
1992 2098 4.922206 TCACCAGTGCATAGAAAAAGGAT 58.078 39.130 0.00 0.00 0.00 3.24
2101 2208 3.054139 TGGGATTGTCATAGAGCAGCTTT 60.054 43.478 0.00 0.00 0.00 3.51
2137 2244 0.610174 CTGCAGAGGACTTGTGGCTA 59.390 55.000 8.42 0.00 0.00 3.93
2277 2384 0.906775 TAACCGGTAAAGAGGCCCTG 59.093 55.000 8.00 0.00 0.00 4.45
2280 2387 1.306148 GCATAACCGGTAAAGAGGCC 58.694 55.000 8.00 0.00 0.00 5.19
2292 2399 3.335579 AGAACTCAAAGACGGCATAACC 58.664 45.455 0.00 0.00 0.00 2.85
2295 2402 4.637276 TCAAAGAACTCAAAGACGGCATA 58.363 39.130 0.00 0.00 0.00 3.14
2352 2459 2.028476 ACCGTTTGTGATCGATCCTTCA 60.028 45.455 22.31 15.19 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.