>input_sequence_81489
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---------------------------ATGCCGACATCGCCGCCGTCGCTCCTGGACCTCCTGAGCCCCTCC---CCTCC
TGCTCCTGAGGCGGCGGCGTCGTCTGGACACGGCGGCGCCACGGTGGTGCAGGTGGTGCCGATGGACGTGTCCGAGGAGC
TGCTGGGCAAGTTCATGGACGCCAGCGAGTTCGGCTTCGACTACGACACGAGCGGCCTCTGGTCCCCGCTCGTGCTGCTG
CGGCCGGAGGTCCTCGCGCTCGCCTCGGCCCGCGCCAAGCGCCCACGCCCTCGCCGGGGCTGGAGAAGGAAGGTTAGTAG
CACTGCAACTGCAAG------CTGTTGAGACCTG---GCTGAGAGTTGAGTCAGATGTTTTGCTCATGTTTGTTGCCTCT
TTTTTCCTGATGATGATGCAGATGTTTTGCTGCTGGTGA-----------------------------------------
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>chr2A_1_TraesCS2A01G129500
AGCATTCCGCCGGTGCGCCGATGCCAAACGTTTCCCAATGGAAAAACACACGTCTGGTGACTAGGCACTCCGTTTGTGTA
TTGGGGGGGGCCAAATGCTTTGGTATACACCCAAACCAAATCAAAGTTACTTTGAACCATGCTGTCCGAAATATAAATAT
TGTGTGAACCAATCTGTGGTTAAATGATTAGGAGGACGGTGGTATCC-CAGCTTGTTAGGGTTCAAGTCCTAGACTTGAC
GCCGGTGCTCGCATTTTTCTGAATTTATTTCAAACGTTCCGGCGATGTGCATTCAGAGGAAGGAGCCGTTCTTGTCAACA
-TGAAGGTGTATGCGCCTGCGCCACGTTAAAA-AAACGTATCTACTACCAAAAGAGTAAACCCAAAAAAAATACCAAAAG
AGTATTCACCGAAT-----------AAAAAAAACAAAGTAATGCACAAAGCTTCTTTTTTCTAGAACAATGCACAAAGCT
ACAGTA-TATACCAGCGAGCCGTTTTTT-CGTCGCCGGGTCCGTGCATTGTACGG-CCCCCGTCTTTAAAATTAAATGCA
TCTGTCGCCGTAGTTCCGCCAGCCATCGCCGTCACGTGATTCAGGGATCTCTCTCCCTCCCTT-TCACAGCGATGCGTCA
CATGAAAGAACGGAACCAAAAGGCCCATGACCATAACTTCTAAATCTGCCTACTCACAAAAGGC-AGCAGCAGCTAAACG
GACCTGCAACCTAATGGCGAACGCCCTGTCCTAATCATGCGGTCATGCGCATCGACCACGACT-----------------
--------------------CTA----TAATCATGCCGCAGCAAGAGGGA--GGGAGAGAGATTCTTCCCGTTCCCTCAC
TCCCATCCCCACTATCTCCCTCTCCCACCCCACACGCCGTGGCCGTGGGCAGCTAGTGGCACCTTGCCCTGCAACCCAGC
AACACACAACGTCCCACCTATCTCACCTCATCTCA--CCTATCCATCCAAAAACATCCGTCCGTCTTGCACCCCCATGCA
TTCGTCCGTCTCGATCAGCACG---ACATGCCGACATCGCCGCCGTCGCTCCTGGACCTCCTGAGCCCCTCC---CCTCC
TGCTCCTGAGGCGGCGGCGTCGTCTGGACACGGCGGCGCCACGGTGGTGCAGGTGGTGCCGATGGACGTGTCCGAGGAGC
TGCTGGGCAAGTTCATGGACGCCAGCGAGTTCGGCTTCGACTACGACACGAGCGGCCTCTGGTCCCCGCTCGTGCTGCTG
CGGCCGGAGGTCCTCGCGCTCGCCTCGGCCCGCGCCAAGCGCCCACGCCCTCGCCGGGGCTGGAGAAGGAAGGTTAGTAG
CACTGCAACTGCAAG------CTGTTGAGACCTG---GCTGAGAGTTGAGTCAGATGTTTTGCTCATGTTTGTTGCCTCT
TTTTTCCTGATGATGATGCAGATGTTTTGCTGCTGGTGACATGCACCACTGCCCATTGGTGTTCTGGGCAATGGGATCAT
--ATAGATCCTTCTGCAGTTTAGGGAGGCTTGCTAATCGATGTATTTACGGGAAAATTACTACTGTACTTAGTTTTCTGT
AAGAAATTAGGGGATTTAACCCTGGGGTGTACTTTGGGCCCGAAATGGCGAGCG------CCATTTTCACCCTCGAGTGA
ATAAGGAAATATAAACATAAGCAGGTCATACGTGTGCAGTTGATCCCACC----ATTGTGGTTGGATCCGGCAACGACGG
CGTTCATGCACGGCACCG---------TTCCCTTGCTGAGGGTGTCGCTGTCGCGAAACCTTCTCATAGTTGGGTGTTGT
AAAAAGCGGTGGTAACTGTTGATGTTTTACTGTATTTTGAAAGGAGGCTGGAGTAACTTGTTCTTGTCTGAAAATCGACT
GATATCAATGTAATCTGTACTCAGACTCCCAGTTAATGAGCTGCTCTGAGATCTGAGGGCATTAATCTTCAGATCCACAG
TTGCAAGTTGCGCAAATAAAAAA-TCATGCAGGAAGAATGAATAAATATCATCTGGAGGTGAAGGAAAGAAGC----CAC
AGGCAGGAACTGTAAACATCCTTTTT-CTATGCACTGGTGATTCTCACTTCACATTACCAAAACGGTCTACCTAGACAAA
TTACCTATACTACAGAATCAGTGGAAACAACAGCAGTAAATTACCAGAAAGCTGCTCTATGACAATCCCACAGCCTAGCT
CTATAGCCACAAGTCCTCTGCAGTTTCATGGGGACTTCCTTTCTTTTCTATATACTGAACATAAAGCACAAGCAAAGTTC
ACTCTTGAAGCAGAGGACATTCCGCATTCGACGTATTCTTCAGACTAGAGCAGGTGTTCCTTCCAGGGCCTCTTTACCGG
TTATGCCGTCTTTGAGTTCTTTGAAGTACACTTCATAGTCCTTCTCAGGAGGAGGGTTTGAAGGATCGATCACAAACGGT
TCGCTAAATGGAACGGTGCTCTTGAC
>chr2B_185
TGG-----------------------------------------------------------------------------
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---------------------------TTAGGAGGACGGTGGTATCAGCAGCCCATTAGGATCCAAGTCCTAGAAGTGAC
ACCGGTGCTCGCATTTTTCTGCATTTATTTCAGGCCTTTTAGCGATGTGCATTCAGTGGAAGAAGACGTTATCGTCCACT
GTGAAGGTGTCTGCGCCTGCACCATGTCAAAAGAAACGTATATATTACCAAAACAGTAAGCCCTAAAAAA---CCAAAAG
AGTATTCACCAAAT-----------AGAAAAAACAAAGTAATGCACAAAGCA--TTTTTTTTAGAACAATGCACAAAGCT
ACTTAATTATACCAGCGAGCCGTTTTTTTCGTCGCCGGGTCCGTGCGTTGTACGGTCCCCCGACTTTAACATTAAATGCA
TCTGTCGCCGTAGC----CCAGCCATCGCCGTCACGTGATTCAGGGATCTCTCTCCCTTTATCCTCACAACGATGCGTCA
CATGAAAGAACGCAAGCAAAAGGC------CCATAACTTCTAAATCTGCCTAGTCACAAAAGGC-AGCAGGAGCTAAACG
GACCTGCAACCTAATGGCGAACGCCCTGTCCTAATCATGCAGCCATGCGCATCGACCACGACTCTCTCTCTCTCTCTCTC
TCACACACACACACACACACCTA----TAATCATGCCGCAGCAAGAGGGA--GAGAGA--GATTCTTCCCGTTCCCTCAC
TCCCATCCCCACTATCTCCCACCCCACAGAC----------GCCGTGGGCAGCCTGTGGCACCTTGCCCTGCAACCAAGC
AA-ACGCAACGTCCCACCTA------------TCA--CCTATCCGTCCAAAAACATCCGTCCGTCTTGCACCCCCATGCA
TTCGTCCGTCTCGATCAGCAGCAGAACATGCCGACGTCGCCACCGTCGCTCCTGGACCTCCTGAGCCCCTCTCCTCCGCC
TGCTCCTTCGCCGGCGGCGTCGGCT---------GGCGCCACGGTGGTGCAGGTGGTGCCGATGGACGTCTCCGAGGAGC
TGCTGGGCAAGTTCATGGACGCCAGCGAGTTCGGCTTCGACTACGACACGAGCGGCCTCTGGTCCCCGCTCGTGCTGCTG
CGGCCGGAGGTCCTCGCGCTCGCCTCGGGCCGCGCCAAGCGTCCACGCCCGCGCCGGAGCTGGAGAAGGAAGGTTAGTAG
CACTGCAACTGCAAGTGCAAGCTGTTGAAACTTGAGAGCTGAGACTTGAGACA---GTTTTGCTGATGTTTCTTGCCTCT
TTTTTCC---TGATGATGCAGATGTTTTGCTGCTGGTGACATGCA---TGCGCCGTTCGTGTTTCGGGCAATCGGGATGT
TCATAGATCCTTCTGCAGTTTAGGGAGGCTTGCTAATCGATGTATTTACGGGGACATTACTACTGTACTTAGTTTTCTGT
AAGAAATTAGGGACTTTAACCCTGGGGTGTACTTTGGGCCCGAAATGGCGAACG------CCATTTTCACCCTCGAGTGA
ATAAGGAAATATAAACATACGCTGGTCATATGTGTGTAGTTGTTCCCACC----ATTGTGGTTGGATCCGGCAACGACGG
CGTTCATGCACTC--------------TTCCCTTGCTGAGGGTGTTGCTGTCGCGAAACCTTCTCATAGTTGGGTGTTGT
AAAAAGCGGTGGTAATCGTTGACGTTTTACTGTATTTGGAAAGGAGGCTGGGATAACTTGCTCTTGTCTGAAAATCGACT
GATATCAATGTAATCTGTACTCAGACTCCCAGTTAATGTCCTGTTCTGAGATCTGAGGGCATTAATCTTCAGGTCCACAG
TTGCAAGTTGCGCAAATAAAAAAATCATGCAGGAAGAATGAATAAATATCATCTGGAGGTGAAGGAAAGAAGC----CAT
AGGCAGGAACTGTAAACCTCCTTTTT-CTATGCACTCATGATTCTCACTTCACATTACCAAAATGGTCTACCTAGATAAA
TTACCTATACTACAGAATCAGTGAAAACAACTGCAGGAAATTACCAGGAAGCTGCTCTATGACAATCCCACAGCCTAGCT
CTACAGCCACAAGTCCTCTGCAGTTTCATGGGGACTTCTTCTCTTTTCTATATACTGAACATAAAGCACAAGCAAAGTTC
ACTCTTGAAGCAGAGGACATTCCGCATTCGACGTATTCTTCAGACTAGAGCAGGTGTTCCTTCGAGAGCCTCTTTACCCG
TGATGCCGTCTTTGAGCTCTTTGAAGTACACTTCGTAGTCCTTCTCGGGAGGAGGGTTCGAAGGATCGATAACGAACGGC
TCGCTAAATGGAACGGTGCTCTTGAC
>chr2D_346
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---------------------------TAGAA-AAACATATATATTACCAAAAAAGTAAGCCCTCAAAAAATACGAAAAA
AGTACTCATCAAATAAATAGGAATAAAAAAAAACAAAGTAATGCACAAAGCA--TTTTTT--AGAACAATGCAGAAAGCT
------------CAGCGAGCCGTTTTTC-CGTCGCCGGGTCCGTGCATTGTACGGCCCCCCGTCTTTAAAATTAAATGCA
TCTGTCGCCGTAGTTCCGCCAGCCATCGCCGTCACGTGATTCAGGGATCA------CTTTACCCTCACAGCGATGCGTCA
CATGAAAGAACGCAAGCAAAAGGC------CCATAACTTCCAACTCTGCCTAGTCACAAAAAGGTAGCAGGAGCTAAACG
GACCTGCAACCTAATGGCGAACGCCCTGTCCTAATCATGCGGCCATGCGCATCGACCACGACTCACACTG----------
TCACACACACACACACACACCTAAGTATAATCATGCCGCAGCAAGAGAGAGGGAGAGA--GATTCTTCCCGTTTCCTCAC
TCCCATCCCCACTATCTCCCACCCCACACAC----------GCCGTGGGCA----------CCTTGCCCTACAGCCAAGC
AA-GCGCAACGTCCCACCTA------------TCTCGCCTATCCATCCAAAAACATCCGTCCGTCTTGCACCCCCATGCA
TTCGTCCGTCTCGATCAGCACAG---CATGCCGACATCGCCGCCGTCGCTCCTGGACCTCCTGAGCCCCTCC---CCTCC
TGCTCCTGAGGCGGCGGCGTCGTCTGGACACGGCGGCGCCACGGTGGTGCAGGTGGTGCCGATGGACGTCTCCGAGGAGC
TGCTGGGCAAGTTCATGGATGCCAGCGAGTTCGGCTTCGACTACGACAGGAGCGGCCTCTGGTCCCCGCTCGTGCTGCTG
CGGCCGGAGGTCCTCGCGCTCGCCTCGGGCCGCGCCAAGCGCCCACGCCCGCGCCGGAGCTGGAGAAGGAAGGTTAGTGA
CACTGGAAGTGCTAG------CTGGTGAGACTTGAGACCTGAGAGTTGAGTCAGATGCTTTGCTGATGTTTCTTGCCTCT
TTTTTCC---TGATGATGCAGATGTTTTGCTGCTGGTGACATGCAGCATGCGCCATTTGTGTTTCGGGCAATTGGGATGT
TCATAGATCATTCCGCAGTTTAGGGAGACTTGCTAATCGATGTATTTACGCGGACATTACTACTC----------TCTGT
AAGAAAATAGGGACTTTAACCCTGG--TGTACTTTGGGCCGGAAATGATGGATGGACTGCCCATTTTCACCCTCGAGTGA
ATAAGGAAATATAAACATACGCATGTCATGTGTGTGTAGTTGATCCCGCCATTAATTGTGGTTGGATCCGGCAACGCAAA
GTAACATCAATAAGTGCGGATTTCCGATTCTCTTGCTGAGGGCGTTGCTGTTGCCAAACCTTCTCATAGTTGGGTATGGT
AAAAAGCGGTGGTAA-----------TTACTGTATTTTGAAAGGAGGCTGGAGTAACTTGTTCTTGTCTGAAAAGCGACT
GATATCAATGTAATCTGTACTCAGACTCCCAGTTAATGTCCTGTTCTGAGATCTGAGGGCATTAATCTTCAGATCCACAG
TTGCAAGTTGCGCAAATG-AAAAATCATGCAGGAAGAATGAATAAATGTCATCCGGAGGCGAAGGAAAGAAGCCATGCAC
AGGCAGGAACTGTAAACCTCCTTTTTTCTATGCACTGATGATTCTCACTTCACATTACCAAAACGGTCTACCTAGACAAA
TTACCTATACTACAGAATCAGTGGAAACAAAAGCAGTAAATTACCGGGAAGCTGCTCTATGACAATCCCACAGCCTAGCT
CTACAGCCACAAGTCCTCTGCAGTCTCATGGGGACTTCTTTTCTTTTCTATATACTGAACATAAAGCACAAGCAAAGTTC
ACTCTTGAAGCAGAGGGCATTCCGCATTCGACGTATTCTTCAGACTAGAGCAGGTGTTCCTTCAAGAGCCTCTTTACCCG
TGATGCCGTCTTTGAGCTCTTTGAAGTACACTTCATAGTCCTTCTCAGGAGGAGGGTTCGAAGGATCGATCACAAACGGT
TCACTAAATGGAACGGTGCTCTTGAC
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-----SSS-----S-S-----------SS----
S--------------------S----------SS-S--SSS---------------S-----S--S----S-S---S--S
----------S---------S---S----------------S--S--------S-----S---S----------------
----------S----------------------------------------SSS------S-------------------
--SSS---------------------------------------------------------------------------
----------------------------------------------------------SSS-S-----------------
------------S--S--------SSSSSS----------------------S-----------------S---------
------------------------------------------S-------------------------------------
-----------------------------------------------------S----SS--------------------
--------------------S-S--SSS-S-SSSSSSSSSS------------SS---------------------S---
--S--S--------------SSSSSSSSSSSS------------------------------------------------
---------------------S----------------------------------------------------------
---------------------------------------------------------------------S----------
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----------------------------S---------------------S------S----------------------
-------------------------------S--------------------------------S------S--------
-------SSS-----------------------------------S--SSSS-----S-----SS-------S--SSSS-
----------------------------------------------------S-S-------------------------
------------SS-------------------------------------S----------------------------
-------------------S----------S-----S-------------------------------------------
-----------SSSSS-----------------------------S----------------------------------
---------------SS-----S---------------------------------------------------------
--------------------------------------SS---S------------------------------------
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-----------------S-------------------S------------------------------------------
-----------------------------------------------S--------------------------------
---S----------------------------------S-----------------------------------------
---------------------------------------------------------------S--S-----------S-
-S--------------S-----------------------------------------S---------------------
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>forward_317
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---------------------------------------------------------GGAAGGAGCCGTTCTTGTCA---
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>reverse_1498
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---------------------------------------------------------GGTGTTCTGGGCAATGGGAT---
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