Multiple sequence alignment - TraesCS2A01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G123700 chr2A 100.000 2886 0 0 1 2886 73151690 73154575 0.000000e+00 5330.0
1 TraesCS2A01G123700 chr2D 87.568 1826 133 41 16 1812 73494353 73496113 0.000000e+00 2028.0
2 TraesCS2A01G123700 chr2D 86.372 543 27 16 1990 2506 73496464 73496985 1.510000e-152 549.0
3 TraesCS2A01G123700 chr2D 92.562 121 9 0 2764 2884 589703007 589702887 1.060000e-39 174.0
4 TraesCS2A01G123700 chr2D 84.722 72 8 3 1862 1932 73496372 73496441 5.160000e-08 69.4
5 TraesCS2A01G123700 chr2B 85.078 2111 151 73 585 2637 111447345 111449349 0.000000e+00 2002.0
6 TraesCS2A01G123700 chr2B 85.069 576 62 17 16 578 111446717 111447281 1.500000e-157 566.0
7 TraesCS2A01G123700 chr2B 84.456 193 26 2 2644 2836 692455178 692454990 1.370000e-43 187.0
8 TraesCS2A01G123700 chr2B 94.068 118 7 0 2767 2884 105849866 105849749 2.280000e-41 180.0
9 TraesCS2A01G123700 chr3B 86.008 243 26 7 2644 2884 631580061 631579825 1.330000e-63 254.0
10 TraesCS2A01G123700 chr3B 81.429 140 20 5 575 713 242644594 242644728 3.040000e-20 110.0
11 TraesCS2A01G123700 chr1B 85.417 240 23 8 2644 2883 520792455 520792228 3.720000e-59 239.0
12 TraesCS2A01G123700 chr1B 89.305 187 19 1 2644 2830 1279206 1279021 1.730000e-57 233.0
13 TraesCS2A01G123700 chr1B 87.574 169 20 1 2644 2812 1291874 1291707 8.160000e-46 195.0
14 TraesCS2A01G123700 chrUn 84.810 237 30 5 2648 2883 34164503 34164734 1.730000e-57 233.0
15 TraesCS2A01G123700 chrUn 91.736 121 10 0 2644 2764 253394022 253394142 4.950000e-38 169.0
16 TraesCS2A01G123700 chr5A 83.058 242 36 4 2648 2884 687098104 687097863 6.260000e-52 215.0
17 TraesCS2A01G123700 chr7B 92.562 121 9 0 2644 2764 263147768 263147648 1.060000e-39 174.0
18 TraesCS2A01G123700 chr7A 92.623 122 8 1 2764 2884 98766862 98766741 1.060000e-39 174.0
19 TraesCS2A01G123700 chr5D 81.935 155 22 6 554 707 9943874 9944023 3.020000e-25 126.0
20 TraesCS2A01G123700 chr5B 82.734 139 20 4 570 707 10099705 10099840 1.400000e-23 121.0
21 TraesCS2A01G123700 chr5B 80.435 138 24 2 557 693 391829160 391829295 5.090000e-18 102.0
22 TraesCS2A01G123700 chr5B 81.203 133 19 4 569 701 489304847 489304721 5.090000e-18 102.0
23 TraesCS2A01G123700 chr4B 79.720 143 21 7 554 694 489296465 489296329 2.370000e-16 97.1
24 TraesCS2A01G123700 chr4D 78.723 141 23 6 569 707 13604817 13604952 1.420000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G123700 chr2A 73151690 73154575 2885 False 5330.000000 5330 100.000000 1 2886 1 chr2A.!!$F1 2885
1 TraesCS2A01G123700 chr2D 73494353 73496985 2632 False 882.133333 2028 86.220667 16 2506 3 chr2D.!!$F1 2490
2 TraesCS2A01G123700 chr2B 111446717 111449349 2632 False 1284.000000 2002 85.073500 16 2637 2 chr2B.!!$F1 2621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1030 1.154205 CCATCGACCGCACTCCATTC 61.154 60.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2797 3176 0.033504 CACACGCACACCTTACTCCT 59.966 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.273016 TCTTCCTTATTTGTACAAAGTGAAGAG 57.727 33.333 28.38 21.79 34.84 2.85
101 106 8.234546 ACCATTGTTGTATTTCGTTCTTATCAC 58.765 33.333 0.00 0.00 0.00 3.06
115 120 9.839817 TCGTTCTTATCACCATCCATTAATTAA 57.160 29.630 0.00 0.00 0.00 1.40
213 221 5.853572 TTCCTTACTTACCCTCAACCATT 57.146 39.130 0.00 0.00 0.00 3.16
216 224 4.941873 CCTTACTTACCCTCAACCATTGAC 59.058 45.833 0.00 0.00 35.46 3.18
219 227 5.161943 ACTTACCCTCAACCATTGACTAC 57.838 43.478 0.00 0.00 35.46 2.73
220 228 4.595781 ACTTACCCTCAACCATTGACTACA 59.404 41.667 0.00 0.00 35.46 2.74
401 426 8.797350 ACCATTGTTATTTACTTACCTACCAC 57.203 34.615 0.00 0.00 0.00 4.16
460 485 9.875675 CTTGTACGTACTAGGTGAAGATTATAC 57.124 37.037 25.12 0.00 0.00 1.47
466 491 8.169910 CGTACTAGGTGAAGATTATACTGATCG 58.830 40.741 0.00 0.00 0.00 3.69
555 582 6.262049 GGGCAAAATGGTAAACAAAATTGACT 59.738 34.615 0.00 0.00 32.05 3.41
565 592 3.421844 ACAAAATTGACTACTGCTCCCC 58.578 45.455 0.00 0.00 0.00 4.81
566 593 3.181434 ACAAAATTGACTACTGCTCCCCA 60.181 43.478 0.00 0.00 0.00 4.96
578 606 3.010584 ACTGCTCCCCACTTCACAAATAT 59.989 43.478 0.00 0.00 0.00 1.28
580 608 5.186256 TGCTCCCCACTTCACAAATATAA 57.814 39.130 0.00 0.00 0.00 0.98
581 609 5.192927 TGCTCCCCACTTCACAAATATAAG 58.807 41.667 0.00 0.00 0.00 1.73
657 742 7.653647 TGTTTGCTTACTCATTTTAATCCGTT 58.346 30.769 0.00 0.00 0.00 4.44
699 784 7.395190 TGTCCAAAAGATCTCATATTTGTGG 57.605 36.000 13.81 5.14 32.29 4.17
722 807 5.278561 GGACGGAGGAAGTACATCATTCTAG 60.279 48.000 0.00 0.00 0.00 2.43
810 897 4.079253 ACACCAACTGTCCAACATAATCC 58.921 43.478 0.00 0.00 0.00 3.01
836 923 6.060136 AGGGTTTCAGTAGACCAACTAAAAC 58.940 40.000 0.00 0.00 37.68 2.43
855 943 5.514274 AAACCCAATAGTTTATCGGCATG 57.486 39.130 0.00 0.00 38.17 4.06
865 953 2.763627 TATCGGCATGGGCATCGTCG 62.764 60.000 0.00 0.00 43.71 5.12
912 1000 1.294780 CGAAGCAGTGGGAAGCTCT 59.705 57.895 0.00 0.00 40.90 4.09
942 1030 1.154205 CCATCGACCGCACTCCATTC 61.154 60.000 0.00 0.00 0.00 2.67
946 1034 1.202371 TCGACCGCACTCCATTCATAC 60.202 52.381 0.00 0.00 0.00 2.39
1036 1124 2.282816 CAAACCCACGCATCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
1037 1125 2.035626 AAACCCACGCATCCCCAG 59.964 61.111 0.00 0.00 0.00 4.45
1038 1126 4.740822 AACCCACGCATCCCCAGC 62.741 66.667 0.00 0.00 0.00 4.85
1046 1134 3.554342 CATCCCCAGCTCCCCTCG 61.554 72.222 0.00 0.00 0.00 4.63
1268 1366 1.927569 CGAGGAGGAGGAGGAGGACA 61.928 65.000 0.00 0.00 0.00 4.02
1269 1367 0.336737 GAGGAGGAGGAGGAGGACAA 59.663 60.000 0.00 0.00 0.00 3.18
1270 1368 0.041982 AGGAGGAGGAGGAGGACAAC 59.958 60.000 0.00 0.00 0.00 3.32
1271 1369 1.324005 GGAGGAGGAGGAGGACAACG 61.324 65.000 0.00 0.00 0.00 4.10
1272 1370 0.323542 GAGGAGGAGGAGGACAACGA 60.324 60.000 0.00 0.00 0.00 3.85
1274 1372 1.507174 GAGGAGGAGGACAACGACG 59.493 63.158 0.00 0.00 0.00 5.12
1275 1373 1.935327 GAGGAGGAGGACAACGACGG 61.935 65.000 0.00 0.00 0.00 4.79
1276 1374 2.572284 GAGGAGGACAACGACGGG 59.428 66.667 0.00 0.00 0.00 5.28
1277 1375 2.203596 AGGAGGACAACGACGGGT 60.204 61.111 0.00 0.00 0.00 5.28
1280 1378 3.509137 GAGGACAACGACGGGTGCA 62.509 63.158 13.95 0.00 0.00 4.57
1319 1417 1.316651 CGAGTACTGGGGCTACTACC 58.683 60.000 0.00 0.00 0.00 3.18
1323 1421 4.050313 CTGGGGCTACTACCAGCA 57.950 61.111 0.00 0.00 46.78 4.41
1324 1422 1.826024 CTGGGGCTACTACCAGCAG 59.174 63.158 0.00 0.00 46.78 4.24
1330 1428 0.391661 GCTACTACCAGCAGCAGCAA 60.392 55.000 3.17 0.00 45.49 3.91
1376 1474 1.979693 GAGGAGGAGGTCAGCACGT 60.980 63.158 0.00 0.00 0.00 4.49
1377 1475 1.534235 AGGAGGAGGTCAGCACGTT 60.534 57.895 0.00 0.00 0.00 3.99
1543 1641 3.056328 GACCGCAAGTTCTGGGCC 61.056 66.667 0.00 0.00 36.66 5.80
1590 1692 2.532250 AACCCAGGAAAAGCCATAGG 57.468 50.000 0.00 0.00 40.02 2.57
1615 1717 0.035820 ATGCAAAGGCCATGGCAAAG 60.036 50.000 36.56 23.18 44.11 2.77
1649 1751 2.252260 CAACCGAAACTGCAGCCG 59.748 61.111 15.27 14.73 0.00 5.52
1650 1752 3.660111 AACCGAAACTGCAGCCGC 61.660 61.111 15.27 1.57 39.24 6.53
1651 1753 4.626081 ACCGAAACTGCAGCCGCT 62.626 61.111 15.27 0.00 39.64 5.52
1652 1754 3.793144 CCGAAACTGCAGCCGCTC 61.793 66.667 15.27 4.26 39.64 5.03
1653 1755 3.043713 CGAAACTGCAGCCGCTCA 61.044 61.111 15.27 0.00 39.64 4.26
1684 1786 5.151389 CGTATGCCTACCTTTGTTTGTTTC 58.849 41.667 0.00 0.00 0.00 2.78
1688 1790 5.656480 TGCCTACCTTTGTTTGTTTCTTTC 58.344 37.500 0.00 0.00 0.00 2.62
1689 1791 5.047847 GCCTACCTTTGTTTGTTTCTTTCC 58.952 41.667 0.00 0.00 0.00 3.13
1690 1792 5.394773 GCCTACCTTTGTTTGTTTCTTTCCA 60.395 40.000 0.00 0.00 0.00 3.53
1691 1793 6.685368 GCCTACCTTTGTTTGTTTCTTTCCAT 60.685 38.462 0.00 0.00 0.00 3.41
1692 1794 7.272244 CCTACCTTTGTTTGTTTCTTTCCATT 58.728 34.615 0.00 0.00 0.00 3.16
1693 1795 7.768582 CCTACCTTTGTTTGTTTCTTTCCATTT 59.231 33.333 0.00 0.00 0.00 2.32
1694 1796 7.994425 ACCTTTGTTTGTTTCTTTCCATTTT 57.006 28.000 0.00 0.00 0.00 1.82
1695 1797 8.402798 ACCTTTGTTTGTTTCTTTCCATTTTT 57.597 26.923 0.00 0.00 0.00 1.94
1696 1798 8.511321 ACCTTTGTTTGTTTCTTTCCATTTTTC 58.489 29.630 0.00 0.00 0.00 2.29
1697 1799 8.729756 CCTTTGTTTGTTTCTTTCCATTTTTCT 58.270 29.630 0.00 0.00 0.00 2.52
1727 1835 9.878599 GATTTCCTTGTACATAATATTCAACGG 57.121 33.333 0.00 0.00 0.00 4.44
1742 1850 1.264288 CAACGGAACTCCTCAACAAGC 59.736 52.381 0.00 0.00 0.00 4.01
1745 1853 1.239347 GGAACTCCTCAACAAGCCAC 58.761 55.000 0.00 0.00 0.00 5.01
1770 1878 0.107752 GGCGTATTTTGACCCCCGTA 60.108 55.000 0.00 0.00 0.00 4.02
1776 1884 1.900245 TTTTGACCCCCGTAAAGCTC 58.100 50.000 0.00 0.00 0.00 4.09
1787 1895 4.174762 CCCGTAAAGCTCTACAGAAAGAC 58.825 47.826 0.00 0.00 0.00 3.01
1812 1920 7.383843 ACTCGATCTTCTTCTTCTTTTCTTGTC 59.616 37.037 0.00 0.00 0.00 3.18
1817 1979 5.156804 TCTTCTTCTTTTCTTGTCGTTGC 57.843 39.130 0.00 0.00 0.00 4.17
1826 1988 0.041312 CTTGTCGTTGCGGGTGAAAG 60.041 55.000 0.00 0.00 0.00 2.62
1827 1989 0.462225 TTGTCGTTGCGGGTGAAAGA 60.462 50.000 0.00 0.00 0.00 2.52
1828 1990 0.462225 TGTCGTTGCGGGTGAAAGAA 60.462 50.000 0.00 0.00 0.00 2.52
1829 1991 0.872388 GTCGTTGCGGGTGAAAGAAT 59.128 50.000 0.00 0.00 0.00 2.40
1830 1992 1.265905 GTCGTTGCGGGTGAAAGAATT 59.734 47.619 0.00 0.00 0.00 2.17
1843 2005 7.038048 GGGTGAAAGAATTGAATTGAATCTCC 58.962 38.462 0.00 1.35 0.00 3.71
1858 2020 4.219944 TGAATCTCCGTGCAAACTAGTACT 59.780 41.667 0.00 0.00 0.00 2.73
1860 2182 4.691860 TCTCCGTGCAAACTAGTACTAC 57.308 45.455 0.00 0.00 0.00 2.73
1893 2215 9.914131 ATACATTTTTCTTTTCTTAGCTTGGTC 57.086 29.630 0.00 0.00 0.00 4.02
1924 2246 0.525761 TGGTCAATTAAAGCAGCGGC 59.474 50.000 0.00 0.00 41.61 6.53
1982 2311 4.447342 GGTGGAGGGGCATGGGTG 62.447 72.222 0.00 0.00 0.00 4.61
2034 2369 1.355563 GCCTCCGCCGCTTTAAATC 59.644 57.895 0.00 0.00 0.00 2.17
2068 2407 2.031157 CGTCAAACTCCCAATTGGACAC 60.031 50.000 26.60 9.57 38.61 3.67
2071 2410 1.604604 AACTCCCAATTGGACACACG 58.395 50.000 26.60 7.94 38.61 4.49
2072 2411 0.889186 ACTCCCAATTGGACACACGC 60.889 55.000 26.60 0.00 38.61 5.34
2077 2416 2.903547 AATTGGACACACGCACGGC 61.904 57.895 0.00 0.00 0.00 5.68
2099 2438 2.588877 GATCACCGACGGGGCATG 60.589 66.667 20.00 7.40 40.62 4.06
2125 2472 1.068250 GTCCGTCCTAGGCTCATGC 59.932 63.158 2.96 0.00 38.76 4.06
2126 2473 1.381191 TCCGTCCTAGGCTCATGCA 60.381 57.895 2.96 0.00 41.91 3.96
2229 2582 3.261951 CTCGGCCGCGTAACCATG 61.262 66.667 23.51 0.00 0.00 3.66
2230 2583 4.071875 TCGGCCGCGTAACCATGT 62.072 61.111 23.51 0.00 0.00 3.21
2231 2584 3.860125 CGGCCGCGTAACCATGTG 61.860 66.667 14.67 0.00 0.00 3.21
2232 2585 2.744709 GGCCGCGTAACCATGTGT 60.745 61.111 4.92 0.00 0.00 3.72
2233 2586 2.478746 GCCGCGTAACCATGTGTG 59.521 61.111 4.92 0.00 0.00 3.82
2234 2587 2.322081 GCCGCGTAACCATGTGTGT 61.322 57.895 4.92 0.00 0.00 3.72
2235 2588 1.495509 CCGCGTAACCATGTGTGTG 59.504 57.895 4.92 0.00 0.00 3.82
2288 2641 0.464916 AGCGGCCGGGGTTAAATAAG 60.465 55.000 29.38 0.00 0.00 1.73
2316 2669 1.372623 GCCAAGCTGCTGTTGCTTC 60.373 57.895 1.35 0.00 46.39 3.86
2320 2673 0.110104 AAGCTGCTGTTGCTTCTCCT 59.890 50.000 1.35 0.00 46.39 3.69
2321 2674 0.110104 AGCTGCTGTTGCTTCTCCTT 59.890 50.000 0.00 0.00 37.52 3.36
2322 2675 0.240411 GCTGCTGTTGCTTCTCCTTG 59.760 55.000 0.00 0.00 40.48 3.61
2323 2676 1.888215 CTGCTGTTGCTTCTCCTTGA 58.112 50.000 0.00 0.00 40.48 3.02
2336 2696 5.106357 GCTTCTCCTTGAGAAAGATGGTTTC 60.106 44.000 7.83 0.00 46.18 2.78
2338 2698 5.555017 TCTCCTTGAGAAAGATGGTTTCAG 58.445 41.667 0.68 0.00 35.59 3.02
2462 2822 0.877071 CGCAGCTGACCATGTTTTCT 59.123 50.000 20.43 0.00 0.00 2.52
2467 2827 4.216257 GCAGCTGACCATGTTTTCTAGAAA 59.784 41.667 20.43 13.99 0.00 2.52
2479 2839 7.534723 TGTTTTCTAGAAAGTCTAGCACCTA 57.465 36.000 17.05 0.00 44.65 3.08
2508 2868 3.120086 ATAGGTGCCGGCATCCCAC 62.120 63.158 35.63 20.58 0.00 4.61
2516 2876 0.893270 CCGGCATCCCACAAAACTCA 60.893 55.000 0.00 0.00 0.00 3.41
2520 2880 2.083774 GCATCCCACAAAACTCATCGA 58.916 47.619 0.00 0.00 0.00 3.59
2525 2885 6.489675 CATCCCACAAAACTCATCGATTAAG 58.510 40.000 0.00 0.00 0.00 1.85
2531 2891 8.023128 CCACAAAACTCATCGATTAAGAAACAT 58.977 33.333 10.74 0.00 0.00 2.71
2536 2896 6.722301 ACTCATCGATTAAGAAACATGCATG 58.278 36.000 25.09 25.09 0.00 4.06
2542 2913 6.974048 TCGATTAAGAAACATGCATGAAATGG 59.026 34.615 32.75 19.04 46.86 3.16
2556 2927 3.486383 TGAAATGGAGCGGAAACTTTCT 58.514 40.909 1.57 0.00 0.00 2.52
2558 2929 2.568623 ATGGAGCGGAAACTTTCTGT 57.431 45.000 11.27 0.08 38.33 3.41
2560 2931 1.946768 TGGAGCGGAAACTTTCTGTTG 59.053 47.619 11.27 0.00 39.13 3.33
2564 2942 4.056050 GAGCGGAAACTTTCTGTTGTAGA 58.944 43.478 11.27 0.00 39.13 2.59
2582 2960 5.909477 TGTAGAAAAACAGAAACGGAGAGA 58.091 37.500 0.00 0.00 0.00 3.10
2609 2988 4.154942 ACAGAAATGAAAGGGCAGTTCAT 58.845 39.130 8.58 8.58 45.47 2.57
2616 2995 5.860941 TGAAAGGGCAGTTCATAAAACAA 57.139 34.783 0.00 0.00 30.08 2.83
2622 3001 5.044558 GGGCAGTTCATAAAACAAAAACGA 58.955 37.500 0.00 0.00 0.00 3.85
2626 3005 7.424167 GGCAGTTCATAAAACAAAAACGAAAAC 59.576 33.333 0.00 0.00 0.00 2.43
2627 3006 7.952637 GCAGTTCATAAAACAAAAACGAAAACA 59.047 29.630 0.00 0.00 0.00 2.83
2656 3035 6.993786 TTTTATGCGTGTTGGATGATTAGA 57.006 33.333 0.00 0.00 0.00 2.10
2657 3036 6.603237 TTTATGCGTGTTGGATGATTAGAG 57.397 37.500 0.00 0.00 0.00 2.43
2658 3037 2.905075 TGCGTGTTGGATGATTAGAGG 58.095 47.619 0.00 0.00 0.00 3.69
2659 3038 2.213499 GCGTGTTGGATGATTAGAGGG 58.787 52.381 0.00 0.00 0.00 4.30
2660 3039 2.158957 GCGTGTTGGATGATTAGAGGGA 60.159 50.000 0.00 0.00 0.00 4.20
2661 3040 3.458189 CGTGTTGGATGATTAGAGGGAC 58.542 50.000 0.00 0.00 0.00 4.46
2663 3042 4.446371 GTGTTGGATGATTAGAGGGACTG 58.554 47.826 0.00 0.00 41.55 3.51
2664 3043 4.080863 GTGTTGGATGATTAGAGGGACTGT 60.081 45.833 0.00 0.00 41.55 3.55
2665 3044 4.080919 TGTTGGATGATTAGAGGGACTGTG 60.081 45.833 0.00 0.00 41.55 3.66
2666 3045 3.041211 TGGATGATTAGAGGGACTGTGG 58.959 50.000 0.00 0.00 41.55 4.17
2667 3046 3.041946 GGATGATTAGAGGGACTGTGGT 58.958 50.000 0.00 0.00 41.55 4.16
2668 3047 4.223953 GGATGATTAGAGGGACTGTGGTA 58.776 47.826 0.00 0.00 41.55 3.25
2669 3048 4.841246 GGATGATTAGAGGGACTGTGGTAT 59.159 45.833 0.00 0.00 41.55 2.73
2670 3049 5.046950 GGATGATTAGAGGGACTGTGGTATC 60.047 48.000 0.00 0.00 41.55 2.24
2671 3050 4.223953 TGATTAGAGGGACTGTGGTATCC 58.776 47.826 0.00 0.00 41.55 2.59
2672 3051 4.078571 TGATTAGAGGGACTGTGGTATCCT 60.079 45.833 0.00 0.00 41.55 3.24
2673 3052 2.463047 AGAGGGACTGTGGTATCCTC 57.537 55.000 0.00 0.00 41.55 3.71
2674 3053 1.646447 AGAGGGACTGTGGTATCCTCA 59.354 52.381 9.88 0.00 42.86 3.86
2675 3054 2.035632 GAGGGACTGTGGTATCCTCAG 58.964 57.143 13.90 13.90 46.71 3.35
2676 3055 0.466124 GGGACTGTGGTATCCTCAGC 59.534 60.000 14.99 9.44 45.66 4.26
2677 3056 0.466124 GGACTGTGGTATCCTCAGCC 59.534 60.000 14.99 13.28 45.66 4.85
2678 3057 0.466124 GACTGTGGTATCCTCAGCCC 59.534 60.000 14.99 6.48 45.66 5.19
2679 3058 0.252696 ACTGTGGTATCCTCAGCCCA 60.253 55.000 14.99 0.00 45.66 5.36
2680 3059 1.135094 CTGTGGTATCCTCAGCCCAT 58.865 55.000 5.19 0.00 38.11 4.00
2681 3060 1.071385 CTGTGGTATCCTCAGCCCATC 59.929 57.143 5.19 0.00 38.11 3.51
2682 3061 1.131638 GTGGTATCCTCAGCCCATCA 58.868 55.000 0.00 0.00 0.00 3.07
2683 3062 1.071385 GTGGTATCCTCAGCCCATCAG 59.929 57.143 0.00 0.00 0.00 2.90
2684 3063 0.689623 GGTATCCTCAGCCCATCAGG 59.310 60.000 0.00 0.00 39.47 3.86
2699 3078 5.779529 CCATCAGGGTTCAAATCCTATTG 57.220 43.478 0.00 0.00 37.45 1.90
2700 3079 4.038402 CCATCAGGGTTCAAATCCTATTGC 59.962 45.833 0.00 0.00 37.45 3.56
2701 3080 4.591321 TCAGGGTTCAAATCCTATTGCT 57.409 40.909 0.00 0.00 37.45 3.91
2702 3081 4.526970 TCAGGGTTCAAATCCTATTGCTC 58.473 43.478 0.00 0.00 37.45 4.26
2703 3082 3.313526 CAGGGTTCAAATCCTATTGCTCG 59.686 47.826 0.00 0.00 37.45 5.03
2704 3083 2.033424 GGGTTCAAATCCTATTGCTCGC 59.967 50.000 0.00 0.00 0.00 5.03
2705 3084 2.682856 GGTTCAAATCCTATTGCTCGCA 59.317 45.455 0.00 0.00 0.00 5.10
2706 3085 3.316308 GGTTCAAATCCTATTGCTCGCAT 59.684 43.478 0.00 0.00 0.00 4.73
2707 3086 4.202050 GGTTCAAATCCTATTGCTCGCATT 60.202 41.667 0.00 0.00 0.00 3.56
2708 3087 5.343249 GTTCAAATCCTATTGCTCGCATTT 58.657 37.500 0.00 0.00 0.00 2.32
2709 3088 6.459573 GGTTCAAATCCTATTGCTCGCATTTA 60.460 38.462 0.00 0.00 0.00 1.40
2710 3089 6.882610 TCAAATCCTATTGCTCGCATTTAT 57.117 33.333 0.00 0.00 0.00 1.40
2711 3090 7.275888 TCAAATCCTATTGCTCGCATTTATT 57.724 32.000 0.00 0.00 0.00 1.40
2712 3091 7.715657 TCAAATCCTATTGCTCGCATTTATTT 58.284 30.769 0.00 0.00 0.00 1.40
2713 3092 7.862372 TCAAATCCTATTGCTCGCATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
2714 3093 7.516198 AATCCTATTGCTCGCATTTATTTCT 57.484 32.000 0.00 0.00 0.00 2.52
2715 3094 6.304356 TCCTATTGCTCGCATTTATTTCTG 57.696 37.500 0.00 0.00 0.00 3.02
2716 3095 6.054941 TCCTATTGCTCGCATTTATTTCTGA 58.945 36.000 0.00 0.00 0.00 3.27
2717 3096 6.542005 TCCTATTGCTCGCATTTATTTCTGAA 59.458 34.615 0.00 0.00 0.00 3.02
2718 3097 7.229306 TCCTATTGCTCGCATTTATTTCTGAAT 59.771 33.333 0.00 0.00 0.00 2.57
2719 3098 7.864379 CCTATTGCTCGCATTTATTTCTGAATT 59.136 33.333 0.00 0.00 0.00 2.17
2720 3099 9.241317 CTATTGCTCGCATTTATTTCTGAATTT 57.759 29.630 0.00 0.00 0.00 1.82
2722 3101 9.754382 ATTGCTCGCATTTATTTCTGAATTTAT 57.246 25.926 0.00 0.00 0.00 1.40
2723 3102 9.585099 TTGCTCGCATTTATTTCTGAATTTATT 57.415 25.926 0.00 0.00 0.00 1.40
2724 3103 9.585099 TGCTCGCATTTATTTCTGAATTTATTT 57.415 25.926 0.00 0.00 0.00 1.40
2738 3117 9.364989 TCTGAATTTATTTTAGGATTTTTGGCG 57.635 29.630 0.00 0.00 0.00 5.69
2739 3118 9.364989 CTGAATTTATTTTAGGATTTTTGGCGA 57.635 29.630 0.00 0.00 0.00 5.54
2740 3119 9.883142 TGAATTTATTTTAGGATTTTTGGCGAT 57.117 25.926 0.00 0.00 0.00 4.58
2742 3121 7.532682 TTTATTTTAGGATTTTTGGCGATGC 57.467 32.000 0.00 0.00 0.00 3.91
2743 3122 2.842208 TTAGGATTTTTGGCGATGCG 57.158 45.000 0.00 0.00 0.00 4.73
2755 3134 3.973923 CGATGCGCATTCAGTGAAA 57.026 47.368 26.12 0.00 0.00 2.69
2756 3135 1.806511 CGATGCGCATTCAGTGAAAG 58.193 50.000 26.12 6.70 0.00 2.62
2757 3136 1.530441 CGATGCGCATTCAGTGAAAGG 60.530 52.381 26.12 6.60 0.00 3.11
2758 3137 1.739466 GATGCGCATTCAGTGAAAGGA 59.261 47.619 26.12 6.36 0.00 3.36
2759 3138 1.159285 TGCGCATTCAGTGAAAGGAG 58.841 50.000 5.66 8.30 0.00 3.69
2760 3139 1.270785 TGCGCATTCAGTGAAAGGAGA 60.271 47.619 5.66 0.00 0.00 3.71
2761 3140 1.129437 GCGCATTCAGTGAAAGGAGAC 59.871 52.381 10.14 1.10 0.00 3.36
2762 3141 1.391485 CGCATTCAGTGAAAGGAGACG 59.609 52.381 10.14 0.74 0.00 4.18
2763 3142 2.417719 GCATTCAGTGAAAGGAGACGT 58.582 47.619 10.14 0.00 0.00 4.34
2764 3143 2.158449 GCATTCAGTGAAAGGAGACGTG 59.842 50.000 10.14 2.11 0.00 4.49
2765 3144 3.653344 CATTCAGTGAAAGGAGACGTGA 58.347 45.455 10.14 0.00 0.00 4.35
2766 3145 4.248859 CATTCAGTGAAAGGAGACGTGAT 58.751 43.478 10.14 0.00 0.00 3.06
2767 3146 5.410924 CATTCAGTGAAAGGAGACGTGATA 58.589 41.667 10.14 0.00 0.00 2.15
2768 3147 5.661056 TTCAGTGAAAGGAGACGTGATAT 57.339 39.130 2.20 0.00 0.00 1.63
2769 3148 4.998788 TCAGTGAAAGGAGACGTGATATG 58.001 43.478 0.00 0.00 0.00 1.78
2770 3149 3.553511 CAGTGAAAGGAGACGTGATATGC 59.446 47.826 0.00 0.00 0.00 3.14
2771 3150 2.866762 GTGAAAGGAGACGTGATATGCC 59.133 50.000 0.00 0.00 0.00 4.40
2772 3151 2.128035 GAAAGGAGACGTGATATGCCG 58.872 52.381 0.00 0.00 0.00 5.69
2773 3152 0.389391 AAGGAGACGTGATATGCCGG 59.611 55.000 0.00 0.00 0.00 6.13
2774 3153 1.664965 GGAGACGTGATATGCCGGC 60.665 63.158 22.73 22.73 0.00 6.13
2775 3154 3.538614 AGACGTGATATGCCGGCT 58.461 55.556 29.70 15.76 37.68 5.52
2776 3155 1.364171 AGACGTGATATGCCGGCTC 59.636 57.895 29.70 17.89 38.19 4.70
2777 3156 1.067416 GACGTGATATGCCGGCTCA 59.933 57.895 29.70 20.57 0.00 4.26
2778 3157 0.941463 GACGTGATATGCCGGCTCAG 60.941 60.000 29.70 17.48 0.00 3.35
2779 3158 1.068083 CGTGATATGCCGGCTCAGT 59.932 57.895 29.70 13.44 0.00 3.41
2780 3159 0.941463 CGTGATATGCCGGCTCAGTC 60.941 60.000 29.70 19.55 0.00 3.51
2781 3160 0.390860 GTGATATGCCGGCTCAGTCT 59.609 55.000 29.70 6.09 0.00 3.24
2782 3161 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
2783 3162 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
2784 3163 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
2785 3164 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
2786 3165 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
2787 3166 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
2788 3167 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
2789 3168 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
2790 3169 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
2791 3170 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
2792 3171 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
2793 3172 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
2794 3173 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
2795 3174 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
2796 3175 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
2797 3176 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
2798 3177 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
2799 3178 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
2800 3179 1.757118 CTTTCGGAGGTGCTCATAGGA 59.243 52.381 0.00 0.00 31.08 2.94
2801 3180 1.403814 TTCGGAGGTGCTCATAGGAG 58.596 55.000 0.00 0.00 44.33 3.69
2802 3181 0.259065 TCGGAGGTGCTCATAGGAGT 59.741 55.000 6.23 0.00 43.37 3.85
2803 3182 1.493446 TCGGAGGTGCTCATAGGAGTA 59.507 52.381 6.23 0.00 43.37 2.59
2804 3183 2.092049 TCGGAGGTGCTCATAGGAGTAA 60.092 50.000 6.23 0.00 43.37 2.24
2805 3184 2.294791 CGGAGGTGCTCATAGGAGTAAG 59.705 54.545 6.23 0.00 43.37 2.34
2806 3185 2.630580 GGAGGTGCTCATAGGAGTAAGG 59.369 54.545 6.23 0.00 43.37 2.69
2807 3186 3.301274 GAGGTGCTCATAGGAGTAAGGT 58.699 50.000 6.23 0.00 43.37 3.50
2808 3187 3.034635 AGGTGCTCATAGGAGTAAGGTG 58.965 50.000 6.23 0.00 43.37 4.00
2809 3188 2.766828 GGTGCTCATAGGAGTAAGGTGT 59.233 50.000 6.23 0.00 43.37 4.16
2810 3189 3.430929 GGTGCTCATAGGAGTAAGGTGTG 60.431 52.174 6.23 0.00 43.37 3.82
2811 3190 2.168521 TGCTCATAGGAGTAAGGTGTGC 59.831 50.000 6.23 0.00 43.37 4.57
2812 3191 2.799917 GCTCATAGGAGTAAGGTGTGCG 60.800 54.545 6.23 0.00 43.37 5.34
2813 3192 2.427453 CTCATAGGAGTAAGGTGTGCGT 59.573 50.000 0.00 0.00 36.36 5.24
2814 3193 2.165641 TCATAGGAGTAAGGTGTGCGTG 59.834 50.000 0.00 0.00 0.00 5.34
2815 3194 1.624336 TAGGAGTAAGGTGTGCGTGT 58.376 50.000 0.00 0.00 0.00 4.49
2816 3195 0.033504 AGGAGTAAGGTGTGCGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
2817 3196 0.249741 GGAGTAAGGTGTGCGTGTGT 60.250 55.000 0.00 0.00 0.00 3.72
2818 3197 0.859232 GAGTAAGGTGTGCGTGTGTG 59.141 55.000 0.00 0.00 0.00 3.82
2819 3198 1.157870 AGTAAGGTGTGCGTGTGTGC 61.158 55.000 0.00 0.00 0.00 4.57
2820 3199 2.241190 TAAGGTGTGCGTGTGTGCG 61.241 57.895 0.00 0.00 37.81 5.34
2821 3200 2.909614 TAAGGTGTGCGTGTGTGCGT 62.910 55.000 0.00 0.00 37.81 5.24
2822 3201 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2823 3202 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
2824 3203 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
2825 3204 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
2826 3205 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2827 3206 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
2828 3207 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
2829 3208 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
2830 3209 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
2831 3210 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
2832 3211 2.480587 CGTGTGTGCGTTCATAGGGATA 60.481 50.000 0.00 0.00 0.00 2.59
2833 3212 3.527533 GTGTGTGCGTTCATAGGGATAA 58.472 45.455 0.00 0.00 0.00 1.75
2834 3213 3.555956 GTGTGTGCGTTCATAGGGATAAG 59.444 47.826 0.00 0.00 0.00 1.73
2835 3214 3.196901 TGTGTGCGTTCATAGGGATAAGT 59.803 43.478 0.00 0.00 0.00 2.24
2836 3215 4.403113 TGTGTGCGTTCATAGGGATAAGTA 59.597 41.667 0.00 0.00 0.00 2.24
2837 3216 5.069914 TGTGTGCGTTCATAGGGATAAGTAT 59.930 40.000 0.00 0.00 0.00 2.12
2838 3217 6.265876 TGTGTGCGTTCATAGGGATAAGTATA 59.734 38.462 0.00 0.00 0.00 1.47
2839 3218 6.585322 GTGTGCGTTCATAGGGATAAGTATAC 59.415 42.308 0.00 0.00 0.00 1.47
2840 3219 5.798934 GTGCGTTCATAGGGATAAGTATACG 59.201 44.000 0.00 0.00 0.00 3.06
2841 3220 4.797349 GCGTTCATAGGGATAAGTATACGC 59.203 45.833 0.00 0.00 42.71 4.42
2842 3221 5.026462 CGTTCATAGGGATAAGTATACGCG 58.974 45.833 3.53 3.53 0.00 6.01
2843 3222 4.627611 TCATAGGGATAAGTATACGCGC 57.372 45.455 5.73 0.00 0.00 6.86
2844 3223 3.064408 TCATAGGGATAAGTATACGCGCG 59.936 47.826 30.96 30.96 0.00 6.86
2845 3224 1.242076 AGGGATAAGTATACGCGCGT 58.758 50.000 39.05 39.05 0.00 6.01
2846 3225 1.068748 AGGGATAAGTATACGCGCGTG 60.069 52.381 42.78 19.78 0.00 5.34
2847 3226 1.335324 GGGATAAGTATACGCGCGTGT 60.335 52.381 42.78 38.08 0.00 4.49
2848 3227 2.095768 GGGATAAGTATACGCGCGTGTA 60.096 50.000 42.78 36.90 0.00 2.90
2849 3228 3.426695 GGGATAAGTATACGCGCGTGTAT 60.427 47.826 42.78 38.00 38.54 2.29
2850 3229 4.201812 GGGATAAGTATACGCGCGTGTATA 60.202 45.833 42.78 36.14 36.48 1.47
2851 3230 5.504665 GGGATAAGTATACGCGCGTGTATAT 60.505 44.000 39.50 31.77 38.98 0.86
2852 3231 6.292865 GGGATAAGTATACGCGCGTGTATATA 60.293 42.308 39.50 31.59 38.98 0.86
2853 3232 7.125755 GGATAAGTATACGCGCGTGTATATAA 58.874 38.462 39.50 30.36 38.98 0.98
2854 3233 7.319851 GGATAAGTATACGCGCGTGTATATAAG 59.680 40.741 39.50 7.98 38.98 1.73
2855 3234 5.536554 AGTATACGCGCGTGTATATAAGT 57.463 39.130 39.50 26.90 38.98 2.24
2856 3235 5.319139 AGTATACGCGCGTGTATATAAGTG 58.681 41.667 39.50 7.16 38.98 3.16
2857 3236 2.480224 ACGCGCGTGTATATAAGTGT 57.520 45.000 37.37 4.40 0.00 3.55
2858 3237 2.801063 ACGCGCGTGTATATAAGTGTT 58.199 42.857 37.37 3.85 0.00 3.32
2859 3238 3.181397 ACGCGCGTGTATATAAGTGTTT 58.819 40.909 37.37 3.04 0.00 2.83
2860 3239 3.000476 ACGCGCGTGTATATAAGTGTTTG 60.000 43.478 37.37 0.00 0.00 2.93
2861 3240 3.277481 GCGCGTGTATATAAGTGTTTGC 58.723 45.455 8.43 0.00 0.00 3.68
2862 3241 3.518544 CGCGTGTATATAAGTGTTTGCG 58.481 45.455 0.00 0.00 35.74 4.85
2863 3242 3.000476 CGCGTGTATATAAGTGTTTGCGT 60.000 43.478 0.00 0.00 37.34 5.24
2864 3243 4.502558 GCGTGTATATAAGTGTTTGCGTC 58.497 43.478 0.00 0.00 0.00 5.19
2865 3244 4.266976 GCGTGTATATAAGTGTTTGCGTCT 59.733 41.667 0.00 0.00 0.00 4.18
2866 3245 5.714272 CGTGTATATAAGTGTTTGCGTCTG 58.286 41.667 0.00 0.00 0.00 3.51
2867 3246 5.287752 CGTGTATATAAGTGTTTGCGTCTGT 59.712 40.000 0.00 0.00 0.00 3.41
2868 3247 6.469915 CGTGTATATAAGTGTTTGCGTCTGTA 59.530 38.462 0.00 0.00 0.00 2.74
2869 3248 7.512579 CGTGTATATAAGTGTTTGCGTCTGTAC 60.513 40.741 0.00 0.00 0.00 2.90
2870 3249 7.487189 GTGTATATAAGTGTTTGCGTCTGTACT 59.513 37.037 0.00 0.00 0.00 2.73
2871 3250 8.676401 TGTATATAAGTGTTTGCGTCTGTACTA 58.324 33.333 0.00 0.00 0.00 1.82
2872 3251 9.674824 GTATATAAGTGTTTGCGTCTGTACTAT 57.325 33.333 0.00 0.00 0.00 2.12
2873 3252 6.887376 ATAAGTGTTTGCGTCTGTACTATG 57.113 37.500 0.00 0.00 0.00 2.23
2874 3253 4.252971 AGTGTTTGCGTCTGTACTATGT 57.747 40.909 0.00 0.00 0.00 2.29
2875 3254 4.628074 AGTGTTTGCGTCTGTACTATGTT 58.372 39.130 0.00 0.00 0.00 2.71
2876 3255 5.775686 AGTGTTTGCGTCTGTACTATGTTA 58.224 37.500 0.00 0.00 0.00 2.41
2877 3256 6.218019 AGTGTTTGCGTCTGTACTATGTTAA 58.782 36.000 0.00 0.00 0.00 2.01
2878 3257 6.702723 AGTGTTTGCGTCTGTACTATGTTAAA 59.297 34.615 0.00 0.00 0.00 1.52
2879 3258 7.225145 AGTGTTTGCGTCTGTACTATGTTAAAA 59.775 33.333 0.00 0.00 0.00 1.52
2880 3259 7.851963 GTGTTTGCGTCTGTACTATGTTAAAAA 59.148 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 9.839817 TTAATTAATGGATGGTGATAAGAACGA 57.160 29.630 0.00 0.00 0.00 3.85
177 182 9.841295 GGTAAGTAAGGAAATATGACAATGGTA 57.159 33.333 0.00 0.00 0.00 3.25
282 290 6.382919 TGAGGGTAAGTAAGCAAATAACCT 57.617 37.500 0.00 0.00 38.16 3.50
430 455 9.618890 AATCTTCACCTAGTACGTACAAGTATA 57.381 33.333 26.55 9.61 0.00 1.47
530 557 6.262049 AGTCAATTTTGTTTACCATTTTGCCC 59.738 34.615 0.00 0.00 0.00 5.36
555 582 1.429930 TTGTGAAGTGGGGAGCAGTA 58.570 50.000 0.00 0.00 0.00 2.74
640 725 9.878667 TGATCTACAAACGGATTAAAATGAGTA 57.121 29.630 0.00 0.00 0.00 2.59
689 774 3.873910 ACTTCCTCCGTCCACAAATATG 58.126 45.455 0.00 0.00 0.00 1.78
696 781 1.822990 TGATGTACTTCCTCCGTCCAC 59.177 52.381 6.32 0.00 0.00 4.02
699 784 4.657436 AGAATGATGTACTTCCTCCGTC 57.343 45.455 6.32 0.00 0.00 4.79
769 856 8.993121 GTTGGTGTGAGTTCAGGATAATATATG 58.007 37.037 0.00 0.00 0.00 1.78
810 897 2.299297 AGTTGGTCTACTGAAACCCTCG 59.701 50.000 0.00 0.00 34.47 4.63
836 923 2.819608 CCCATGCCGATAAACTATTGGG 59.180 50.000 2.75 0.00 39.68 4.12
855 943 1.012486 AAAAGACGACGACGATGCCC 61.012 55.000 15.32 0.00 42.66 5.36
881 969 1.587613 GCTTCGCCACACGCAAAAA 60.588 52.632 0.00 0.00 43.23 1.94
942 1030 4.281435 ACCCACGGTTTTTAAAAGGGTATG 59.719 41.667 20.69 9.17 45.74 2.39
946 1034 2.803852 GCACCCACGGTTTTTAAAAGGG 60.804 50.000 16.77 16.77 40.66 3.95
1036 1124 4.851214 GAGGAGGCGAGGGGAGCT 62.851 72.222 0.00 0.00 34.52 4.09
1037 1125 4.851214 AGAGGAGGCGAGGGGAGC 62.851 72.222 0.00 0.00 0.00 4.70
1038 1126 1.681486 GAAAGAGGAGGCGAGGGGAG 61.681 65.000 0.00 0.00 0.00 4.30
1046 1134 1.743252 CGCTGTGGAAAGAGGAGGC 60.743 63.158 0.00 0.00 0.00 4.70
1244 1339 2.517402 CTCCTCCTCCTCGTCCCG 60.517 72.222 0.00 0.00 0.00 5.14
1280 1378 4.694233 CACCTCCACGCAGCTGCT 62.694 66.667 34.22 19.58 39.32 4.24
1296 1394 0.682209 GTAGCCCCAGTACTCGTCCA 60.682 60.000 0.00 0.00 0.00 4.02
1319 1417 2.255554 CTGCTGTTGCTGCTGCTG 59.744 61.111 17.00 0.77 40.48 4.41
1330 1428 3.258228 TTCCTGCGGATGCTGCTGT 62.258 57.895 0.00 0.00 43.34 4.40
1376 1474 0.756294 TTCTTCCACCAGACGCTCAA 59.244 50.000 0.00 0.00 0.00 3.02
1377 1475 0.318441 CTTCTTCCACCAGACGCTCA 59.682 55.000 0.00 0.00 0.00 4.26
1461 1559 4.675303 CCTCCCCCTCACCACCCA 62.675 72.222 0.00 0.00 0.00 4.51
1462 1560 4.348495 TCCTCCCCCTCACCACCC 62.348 72.222 0.00 0.00 0.00 4.61
1463 1561 2.689034 CTCCTCCCCCTCACCACC 60.689 72.222 0.00 0.00 0.00 4.61
1466 1564 0.252742 TTCTTCTCCTCCCCCTCACC 60.253 60.000 0.00 0.00 0.00 4.02
1567 1665 1.703411 TGGCTTTTCCTGGGTTTCAG 58.297 50.000 0.00 0.00 43.00 3.02
1572 1670 1.285078 GACCTATGGCTTTTCCTGGGT 59.715 52.381 0.00 0.00 35.54 4.51
1573 1671 1.747206 CGACCTATGGCTTTTCCTGGG 60.747 57.143 0.00 0.00 35.26 4.45
1574 1672 1.668419 CGACCTATGGCTTTTCCTGG 58.332 55.000 0.00 0.00 35.26 4.45
1575 1673 1.668419 CCGACCTATGGCTTTTCCTG 58.332 55.000 0.00 0.00 35.26 3.86
1632 1734 2.252260 CGGCTGCAGTTTCGGTTG 59.748 61.111 16.64 0.00 0.00 3.77
1649 1751 1.429423 GCATACGCTTGGGTTGAGC 59.571 57.895 0.00 0.00 36.79 4.26
1650 1752 0.392998 AGGCATACGCTTGGGTTGAG 60.393 55.000 0.00 0.00 38.60 3.02
1651 1753 0.906066 TAGGCATACGCTTGGGTTGA 59.094 50.000 0.00 0.00 38.60 3.18
1652 1754 1.014352 GTAGGCATACGCTTGGGTTG 58.986 55.000 0.00 0.00 38.60 3.77
1653 1755 0.107361 GGTAGGCATACGCTTGGGTT 60.107 55.000 1.93 0.00 38.60 4.11
1684 1786 9.940166 CAAGGAAATCAAAAGAAAAATGGAAAG 57.060 29.630 0.00 0.00 0.00 2.62
1688 1790 9.323985 TGTACAAGGAAATCAAAAGAAAAATGG 57.676 29.630 0.00 0.00 0.00 3.16
1702 1804 9.621629 TCCGTTGAATATTATGTACAAGGAAAT 57.378 29.630 0.00 0.75 0.00 2.17
1707 1809 8.548721 GGAGTTCCGTTGAATATTATGTACAAG 58.451 37.037 0.00 0.00 31.98 3.16
1723 1831 1.594331 GCTTGTTGAGGAGTTCCGTT 58.406 50.000 0.00 0.00 42.08 4.44
1724 1832 0.250338 GGCTTGTTGAGGAGTTCCGT 60.250 55.000 0.00 0.00 42.08 4.69
1725 1833 0.250295 TGGCTTGTTGAGGAGTTCCG 60.250 55.000 0.00 0.00 42.08 4.30
1726 1834 1.202818 AGTGGCTTGTTGAGGAGTTCC 60.203 52.381 0.00 0.00 0.00 3.62
1727 1835 1.876156 CAGTGGCTTGTTGAGGAGTTC 59.124 52.381 0.00 0.00 0.00 3.01
1745 1853 0.808755 GGTCAAAATACGCCACCCAG 59.191 55.000 0.00 0.00 0.00 4.45
1770 1878 5.417580 AGATCGAGTCTTTCTGTAGAGCTTT 59.582 40.000 0.00 0.00 31.47 3.51
1787 1895 7.410300 CGACAAGAAAAGAAGAAGAAGATCGAG 60.410 40.741 0.00 0.00 0.00 4.04
1812 1920 1.265635 TCAATTCTTTCACCCGCAACG 59.734 47.619 0.00 0.00 0.00 4.10
1817 1979 6.624423 AGATTCAATTCAATTCTTTCACCCG 58.376 36.000 0.00 0.00 0.00 5.28
1826 1988 4.985413 TGCACGGAGATTCAATTCAATTC 58.015 39.130 0.00 0.00 0.00 2.17
1827 1989 5.389859 TTGCACGGAGATTCAATTCAATT 57.610 34.783 0.00 0.00 0.00 2.32
1828 1990 5.047802 AGTTTGCACGGAGATTCAATTCAAT 60.048 36.000 0.00 0.00 0.00 2.57
1829 1991 4.278170 AGTTTGCACGGAGATTCAATTCAA 59.722 37.500 0.00 0.00 0.00 2.69
1830 1992 3.820467 AGTTTGCACGGAGATTCAATTCA 59.180 39.130 0.00 0.00 0.00 2.57
1843 2005 8.684973 ATTTTCTAGTAGTACTAGTTTGCACG 57.315 34.615 28.50 9.20 46.31 5.34
1872 2194 8.974060 TCTAGACCAAGCTAAGAAAAGAAAAA 57.026 30.769 0.00 0.00 0.00 1.94
1874 2196 7.607991 CCATCTAGACCAAGCTAAGAAAAGAAA 59.392 37.037 0.00 0.00 0.00 2.52
1875 2197 7.106239 CCATCTAGACCAAGCTAAGAAAAGAA 58.894 38.462 0.00 0.00 0.00 2.52
1876 2198 6.352222 CCCATCTAGACCAAGCTAAGAAAAGA 60.352 42.308 0.00 0.00 0.00 2.52
1877 2199 5.819901 CCCATCTAGACCAAGCTAAGAAAAG 59.180 44.000 0.00 0.00 0.00 2.27
1885 2207 2.936823 CCCCCATCTAGACCAAGCT 58.063 57.895 0.00 0.00 0.00 3.74
1983 2312 4.106925 GCCTGCCACCTCTCCTGG 62.107 72.222 0.00 0.00 0.00 4.45
2017 2352 1.444917 GGGATTTAAAGCGGCGGAGG 61.445 60.000 9.78 0.00 0.00 4.30
2018 2353 1.444917 GGGGATTTAAAGCGGCGGAG 61.445 60.000 9.78 0.00 0.00 4.63
2034 2369 1.823169 TTTGACGAGGAAGGACGGGG 61.823 60.000 0.00 0.00 0.00 5.73
2094 2433 3.585990 CGGACGGAATGCCATGCC 61.586 66.667 0.00 0.00 0.00 4.40
2099 2438 1.067582 CTAGGACGGACGGAATGCC 59.932 63.158 0.00 0.00 0.00 4.40
2125 2472 0.178958 ATCCGGGCTAGGACCTACTG 60.179 60.000 0.00 0.00 44.07 2.74
2126 2473 0.112801 GATCCGGGCTAGGACCTACT 59.887 60.000 0.00 0.00 44.07 2.57
2228 2581 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
2229 2582 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
2230 2583 4.003648 TCATAAACACACACACACACACA 58.996 39.130 0.00 0.00 0.00 3.72
2231 2584 4.608073 TCATAAACACACACACACACAC 57.392 40.909 0.00 0.00 0.00 3.82
2232 2585 4.036144 CCATCATAAACACACACACACACA 59.964 41.667 0.00 0.00 0.00 3.72
2233 2586 4.536065 CCATCATAAACACACACACACAC 58.464 43.478 0.00 0.00 0.00 3.82
2234 2587 3.567585 CCCATCATAAACACACACACACA 59.432 43.478 0.00 0.00 0.00 3.72
2235 2588 3.568007 ACCCATCATAAACACACACACAC 59.432 43.478 0.00 0.00 0.00 3.82
2297 2650 3.300765 AGCAACAGCAGCTTGGCC 61.301 61.111 0.00 0.00 39.87 5.36
2316 2669 5.312079 ACTGAAACCATCTTTCTCAAGGAG 58.688 41.667 0.00 0.00 0.00 3.69
2320 2673 8.463930 AACATAACTGAAACCATCTTTCTCAA 57.536 30.769 0.00 0.00 0.00 3.02
2321 2674 8.463930 AAACATAACTGAAACCATCTTTCTCA 57.536 30.769 0.00 0.00 0.00 3.27
2336 2696 7.096230 CCGCCAGTTTTCTTTTAAACATAACTG 60.096 37.037 16.86 16.86 39.82 3.16
2338 2698 6.346279 GCCGCCAGTTTTCTTTTAAACATAAC 60.346 38.462 0.00 0.00 39.82 1.89
2351 2711 1.661509 GCAACAGCCGCCAGTTTTC 60.662 57.895 0.00 0.00 0.00 2.29
2355 2715 4.254709 TGAGCAACAGCCGCCAGT 62.255 61.111 0.00 0.00 0.00 4.00
2402 2762 8.255905 TCTTTCTATAAAGCCAACTACAGTACC 58.744 37.037 0.00 0.00 41.64 3.34
2446 2806 5.625150 ACTTTCTAGAAAACATGGTCAGCT 58.375 37.500 18.25 0.00 0.00 4.24
2447 2807 5.703130 AGACTTTCTAGAAAACATGGTCAGC 59.297 40.000 24.82 9.12 0.00 4.26
2462 2822 4.350245 TGCCTTAGGTGCTAGACTTTCTA 58.650 43.478 0.00 0.00 0.00 2.10
2467 2827 2.840651 ACAATGCCTTAGGTGCTAGACT 59.159 45.455 0.00 0.00 0.00 3.24
2508 2868 7.538334 TGCATGTTTCTTAATCGATGAGTTTTG 59.462 33.333 0.00 0.00 0.00 2.44
2509 2869 7.592938 TGCATGTTTCTTAATCGATGAGTTTT 58.407 30.769 0.00 0.00 0.00 2.43
2516 2876 7.650504 CCATTTCATGCATGTTTCTTAATCGAT 59.349 33.333 25.43 0.00 0.00 3.59
2520 2880 6.759827 GCTCCATTTCATGCATGTTTCTTAAT 59.240 34.615 25.43 13.17 0.00 1.40
2525 2885 2.855963 CGCTCCATTTCATGCATGTTTC 59.144 45.455 25.43 7.30 0.00 2.78
2531 2891 1.202114 GTTTCCGCTCCATTTCATGCA 59.798 47.619 0.00 0.00 0.00 3.96
2536 2896 3.253432 ACAGAAAGTTTCCGCTCCATTTC 59.747 43.478 12.05 0.00 0.00 2.17
2542 2913 4.056050 TCTACAACAGAAAGTTTCCGCTC 58.944 43.478 12.05 0.00 38.74 5.03
2556 2927 5.875910 TCTCCGTTTCTGTTTTTCTACAACA 59.124 36.000 0.00 0.00 33.09 3.33
2558 2929 6.342906 TCTCTCCGTTTCTGTTTTTCTACAA 58.657 36.000 0.00 0.00 0.00 2.41
2560 2931 6.839820 TTCTCTCCGTTTCTGTTTTTCTAC 57.160 37.500 0.00 0.00 0.00 2.59
2588 2966 4.796038 ATGAACTGCCCTTTCATTTCTG 57.204 40.909 0.00 0.00 40.12 3.02
2589 2967 6.916360 TTTATGAACTGCCCTTTCATTTCT 57.084 33.333 9.15 0.00 40.12 2.52
2600 2979 6.576551 TTCGTTTTTGTTTTATGAACTGCC 57.423 33.333 0.00 0.00 0.00 4.85
2637 3016 3.470709 CCTCTAATCATCCAACACGCAT 58.529 45.455 0.00 0.00 0.00 4.73
2638 3017 2.419990 CCCTCTAATCATCCAACACGCA 60.420 50.000 0.00 0.00 0.00 5.24
2639 3018 2.158957 TCCCTCTAATCATCCAACACGC 60.159 50.000 0.00 0.00 0.00 5.34
2640 3019 3.133003 AGTCCCTCTAATCATCCAACACG 59.867 47.826 0.00 0.00 0.00 4.49
2641 3020 4.080863 ACAGTCCCTCTAATCATCCAACAC 60.081 45.833 0.00 0.00 0.00 3.32
2642 3021 4.080919 CACAGTCCCTCTAATCATCCAACA 60.081 45.833 0.00 0.00 0.00 3.33
2643 3022 4.446371 CACAGTCCCTCTAATCATCCAAC 58.554 47.826 0.00 0.00 0.00 3.77
2644 3023 3.455910 CCACAGTCCCTCTAATCATCCAA 59.544 47.826 0.00 0.00 0.00 3.53
2645 3024 3.041211 CCACAGTCCCTCTAATCATCCA 58.959 50.000 0.00 0.00 0.00 3.41
2646 3025 3.041946 ACCACAGTCCCTCTAATCATCC 58.958 50.000 0.00 0.00 0.00 3.51
2647 3026 5.046950 GGATACCACAGTCCCTCTAATCATC 60.047 48.000 0.00 0.00 0.00 2.92
2648 3027 4.841246 GGATACCACAGTCCCTCTAATCAT 59.159 45.833 0.00 0.00 0.00 2.45
2649 3028 4.078571 AGGATACCACAGTCCCTCTAATCA 60.079 45.833 0.00 0.00 35.00 2.57
2650 3029 4.484912 AGGATACCACAGTCCCTCTAATC 58.515 47.826 0.00 0.00 35.00 1.75
2651 3030 4.078571 TGAGGATACCACAGTCCCTCTAAT 60.079 45.833 0.00 0.00 42.29 1.73
2652 3031 3.271225 TGAGGATACCACAGTCCCTCTAA 59.729 47.826 0.00 0.00 42.29 2.10
2653 3032 2.856864 TGAGGATACCACAGTCCCTCTA 59.143 50.000 0.00 0.00 42.29 2.43
2654 3033 1.646447 TGAGGATACCACAGTCCCTCT 59.354 52.381 0.00 0.00 42.29 3.69
2655 3034 2.035632 CTGAGGATACCACAGTCCCTC 58.964 57.143 0.00 0.00 42.21 4.30
2656 3035 1.967274 GCTGAGGATACCACAGTCCCT 60.967 57.143 14.43 0.00 41.53 4.20
2657 3036 0.466124 GCTGAGGATACCACAGTCCC 59.534 60.000 14.43 0.00 41.53 4.46
2658 3037 0.466124 GGCTGAGGATACCACAGTCC 59.534 60.000 14.43 12.31 41.53 3.85
2659 3038 0.466124 GGGCTGAGGATACCACAGTC 59.534 60.000 14.43 12.52 42.67 3.51
2660 3039 0.252696 TGGGCTGAGGATACCACAGT 60.253 55.000 14.43 0.00 41.53 3.55
2661 3040 1.071385 GATGGGCTGAGGATACCACAG 59.929 57.143 10.07 10.07 42.11 3.66
2662 3041 1.131638 GATGGGCTGAGGATACCACA 58.868 55.000 0.00 0.00 35.52 4.17
2663 3042 1.071385 CTGATGGGCTGAGGATACCAC 59.929 57.143 0.00 0.00 35.52 4.16
2664 3043 1.427809 CTGATGGGCTGAGGATACCA 58.572 55.000 0.00 0.00 37.41 3.25
2665 3044 0.689623 CCTGATGGGCTGAGGATACC 59.310 60.000 0.00 0.00 37.17 2.73
2677 3056 4.038402 GCAATAGGATTTGAACCCTGATGG 59.962 45.833 0.00 0.00 41.37 3.51
2678 3057 4.891756 AGCAATAGGATTTGAACCCTGATG 59.108 41.667 0.00 0.00 34.11 3.07
2679 3058 5.134725 AGCAATAGGATTTGAACCCTGAT 57.865 39.130 0.00 0.00 34.11 2.90
2680 3059 4.526970 GAGCAATAGGATTTGAACCCTGA 58.473 43.478 0.00 0.00 34.11 3.86
2681 3060 3.313526 CGAGCAATAGGATTTGAACCCTG 59.686 47.826 0.00 0.00 34.11 4.45
2682 3061 3.545703 CGAGCAATAGGATTTGAACCCT 58.454 45.455 0.00 0.00 36.60 4.34
2683 3062 2.033424 GCGAGCAATAGGATTTGAACCC 59.967 50.000 0.00 0.00 0.00 4.11
2684 3063 2.682856 TGCGAGCAATAGGATTTGAACC 59.317 45.455 0.00 0.00 0.00 3.62
2685 3064 4.558538 ATGCGAGCAATAGGATTTGAAC 57.441 40.909 0.57 0.00 0.00 3.18
2686 3065 5.581126 AAATGCGAGCAATAGGATTTGAA 57.419 34.783 0.57 0.00 37.10 2.69
2687 3066 6.882610 ATAAATGCGAGCAATAGGATTTGA 57.117 33.333 0.57 0.00 38.51 2.69
2688 3067 7.864379 AGAAATAAATGCGAGCAATAGGATTTG 59.136 33.333 0.57 0.00 38.51 2.32
2689 3068 7.864379 CAGAAATAAATGCGAGCAATAGGATTT 59.136 33.333 0.57 4.53 40.54 2.17
2690 3069 7.229306 TCAGAAATAAATGCGAGCAATAGGATT 59.771 33.333 0.57 0.00 0.00 3.01
2691 3070 6.712095 TCAGAAATAAATGCGAGCAATAGGAT 59.288 34.615 0.57 0.00 0.00 3.24
2692 3071 6.054941 TCAGAAATAAATGCGAGCAATAGGA 58.945 36.000 0.57 0.00 0.00 2.94
2693 3072 6.304356 TCAGAAATAAATGCGAGCAATAGG 57.696 37.500 0.57 0.00 0.00 2.57
2694 3073 8.792831 AATTCAGAAATAAATGCGAGCAATAG 57.207 30.769 0.57 0.00 0.00 1.73
2696 3075 9.754382 ATAAATTCAGAAATAAATGCGAGCAAT 57.246 25.926 0.57 0.00 0.00 3.56
2697 3076 9.585099 AATAAATTCAGAAATAAATGCGAGCAA 57.415 25.926 0.57 0.00 0.00 3.91
2698 3077 9.585099 AAATAAATTCAGAAATAAATGCGAGCA 57.415 25.926 0.00 0.00 0.00 4.26
2712 3091 9.364989 CGCCAAAAATCCTAAAATAAATTCAGA 57.635 29.630 0.00 0.00 0.00 3.27
2713 3092 9.364989 TCGCCAAAAATCCTAAAATAAATTCAG 57.635 29.630 0.00 0.00 0.00 3.02
2714 3093 9.883142 ATCGCCAAAAATCCTAAAATAAATTCA 57.117 25.926 0.00 0.00 0.00 2.57
2716 3095 8.611757 GCATCGCCAAAAATCCTAAAATAAATT 58.388 29.630 0.00 0.00 0.00 1.82
2717 3096 7.042791 CGCATCGCCAAAAATCCTAAAATAAAT 60.043 33.333 0.00 0.00 0.00 1.40
2718 3097 6.254589 CGCATCGCCAAAAATCCTAAAATAAA 59.745 34.615 0.00 0.00 0.00 1.40
2719 3098 5.746245 CGCATCGCCAAAAATCCTAAAATAA 59.254 36.000 0.00 0.00 0.00 1.40
2720 3099 5.277825 CGCATCGCCAAAAATCCTAAAATA 58.722 37.500 0.00 0.00 0.00 1.40
2721 3100 4.111916 CGCATCGCCAAAAATCCTAAAAT 58.888 39.130 0.00 0.00 0.00 1.82
2722 3101 3.506810 CGCATCGCCAAAAATCCTAAAA 58.493 40.909 0.00 0.00 0.00 1.52
2723 3102 3.143807 CGCATCGCCAAAAATCCTAAA 57.856 42.857 0.00 0.00 0.00 1.85
2724 3103 2.842208 CGCATCGCCAAAAATCCTAA 57.158 45.000 0.00 0.00 0.00 2.69
2737 3116 1.530441 CCTTTCACTGAATGCGCATCG 60.530 52.381 25.53 17.09 0.00 3.84
2738 3117 1.739466 TCCTTTCACTGAATGCGCATC 59.261 47.619 25.53 17.12 0.00 3.91
2739 3118 1.741706 CTCCTTTCACTGAATGCGCAT 59.258 47.619 19.28 19.28 0.00 4.73
2740 3119 1.159285 CTCCTTTCACTGAATGCGCA 58.841 50.000 14.96 14.96 0.00 6.09
2741 3120 1.129437 GTCTCCTTTCACTGAATGCGC 59.871 52.381 0.00 0.00 0.00 6.09
2742 3121 1.391485 CGTCTCCTTTCACTGAATGCG 59.609 52.381 0.00 0.00 0.00 4.73
2743 3122 2.158449 CACGTCTCCTTTCACTGAATGC 59.842 50.000 0.00 0.00 0.00 3.56
2744 3123 3.653344 TCACGTCTCCTTTCACTGAATG 58.347 45.455 0.00 0.00 0.00 2.67
2745 3124 4.543590 ATCACGTCTCCTTTCACTGAAT 57.456 40.909 0.00 0.00 0.00 2.57
2746 3125 5.410924 CATATCACGTCTCCTTTCACTGAA 58.589 41.667 0.00 0.00 0.00 3.02
2747 3126 4.678044 GCATATCACGTCTCCTTTCACTGA 60.678 45.833 0.00 0.00 0.00 3.41
2748 3127 3.553511 GCATATCACGTCTCCTTTCACTG 59.446 47.826 0.00 0.00 0.00 3.66
2749 3128 3.430929 GGCATATCACGTCTCCTTTCACT 60.431 47.826 0.00 0.00 0.00 3.41
2750 3129 2.866762 GGCATATCACGTCTCCTTTCAC 59.133 50.000 0.00 0.00 0.00 3.18
2751 3130 2.481276 CGGCATATCACGTCTCCTTTCA 60.481 50.000 0.00 0.00 0.00 2.69
2752 3131 2.128035 CGGCATATCACGTCTCCTTTC 58.872 52.381 0.00 0.00 0.00 2.62
2753 3132 1.202533 CCGGCATATCACGTCTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
2754 3133 0.389391 CCGGCATATCACGTCTCCTT 59.611 55.000 0.00 0.00 0.00 3.36
2755 3134 2.041976 CCGGCATATCACGTCTCCT 58.958 57.895 0.00 0.00 0.00 3.69
2756 3135 1.664965 GCCGGCATATCACGTCTCC 60.665 63.158 24.80 0.00 0.00 3.71
2757 3136 0.664767 GAGCCGGCATATCACGTCTC 60.665 60.000 31.54 9.44 0.00 3.36
2758 3137 1.364171 GAGCCGGCATATCACGTCT 59.636 57.895 31.54 2.38 0.00 4.18
2759 3138 0.941463 CTGAGCCGGCATATCACGTC 60.941 60.000 31.54 15.36 0.00 4.34
2760 3139 1.068083 CTGAGCCGGCATATCACGT 59.932 57.895 31.54 4.27 0.00 4.49
2761 3140 0.941463 GACTGAGCCGGCATATCACG 60.941 60.000 31.54 18.07 0.00 4.35
2762 3141 0.390860 AGACTGAGCCGGCATATCAC 59.609 55.000 31.54 14.88 0.00 3.06
2763 3142 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
2764 3143 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
2765 3144 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
2766 3145 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
2767 3146 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
2768 3147 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
2769 3148 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
2770 3149 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
2771 3150 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
2772 3151 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
2773 3152 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
2774 3153 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
2775 3154 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
2776 3155 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
2777 3156 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
2778 3157 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
2779 3158 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
2780 3159 1.757118 TCCTATGAGCACCTCCGAAAG 59.243 52.381 0.00 0.00 0.00 2.62
2781 3160 1.757118 CTCCTATGAGCACCTCCGAAA 59.243 52.381 0.00 0.00 0.00 3.46
2782 3161 1.342076 ACTCCTATGAGCACCTCCGAA 60.342 52.381 0.00 0.00 42.74 4.30
2783 3162 0.259065 ACTCCTATGAGCACCTCCGA 59.741 55.000 0.00 0.00 42.74 4.55
2784 3163 1.982660 TACTCCTATGAGCACCTCCG 58.017 55.000 0.00 0.00 42.74 4.63
2785 3164 2.630580 CCTTACTCCTATGAGCACCTCC 59.369 54.545 0.00 0.00 42.74 4.30
2786 3165 3.068873 CACCTTACTCCTATGAGCACCTC 59.931 52.174 0.00 0.00 42.74 3.85
2787 3166 3.034635 CACCTTACTCCTATGAGCACCT 58.965 50.000 0.00 0.00 42.74 4.00
2788 3167 2.766828 ACACCTTACTCCTATGAGCACC 59.233 50.000 0.00 0.00 42.74 5.01
2789 3168 3.786635 CACACCTTACTCCTATGAGCAC 58.213 50.000 0.00 0.00 42.74 4.40
2790 3169 2.168521 GCACACCTTACTCCTATGAGCA 59.831 50.000 0.00 0.00 42.74 4.26
2791 3170 2.799917 CGCACACCTTACTCCTATGAGC 60.800 54.545 0.00 0.00 42.74 4.26
2792 3171 2.427453 ACGCACACCTTACTCCTATGAG 59.573 50.000 0.00 0.00 44.62 2.90
2793 3172 2.165641 CACGCACACCTTACTCCTATGA 59.834 50.000 0.00 0.00 0.00 2.15
2794 3173 2.094182 ACACGCACACCTTACTCCTATG 60.094 50.000 0.00 0.00 0.00 2.23
2795 3174 2.094182 CACACGCACACCTTACTCCTAT 60.094 50.000 0.00 0.00 0.00 2.57
2796 3175 1.271379 CACACGCACACCTTACTCCTA 59.729 52.381 0.00 0.00 0.00 2.94
2797 3176 0.033504 CACACGCACACCTTACTCCT 59.966 55.000 0.00 0.00 0.00 3.69
2798 3177 0.249741 ACACACGCACACCTTACTCC 60.250 55.000 0.00 0.00 0.00 3.85
2799 3178 0.859232 CACACACGCACACCTTACTC 59.141 55.000 0.00 0.00 0.00 2.59
2800 3179 1.157870 GCACACACGCACACCTTACT 61.158 55.000 0.00 0.00 0.00 2.24
2801 3180 1.278637 GCACACACGCACACCTTAC 59.721 57.895 0.00 0.00 0.00 2.34
2802 3181 2.241190 CGCACACACGCACACCTTA 61.241 57.895 0.00 0.00 0.00 2.69
2803 3182 3.572539 CGCACACACGCACACCTT 61.573 61.111 0.00 0.00 0.00 3.50
2804 3183 4.830765 ACGCACACACGCACACCT 62.831 61.111 0.00 0.00 36.19 4.00
2805 3184 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
2806 3185 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
2807 3186 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2808 3187 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
2809 3188 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
2810 3189 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
2811 3190 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
2812 3191 2.024176 ATCCCTATGAACGCACACAC 57.976 50.000 0.00 0.00 0.00 3.82
2813 3192 3.196901 ACTTATCCCTATGAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
2814 3193 3.793559 ACTTATCCCTATGAACGCACAC 58.206 45.455 0.00 0.00 0.00 3.82
2815 3194 5.801531 ATACTTATCCCTATGAACGCACA 57.198 39.130 0.00 0.00 0.00 4.57
2816 3195 5.798934 CGTATACTTATCCCTATGAACGCAC 59.201 44.000 0.56 0.00 0.00 5.34
2817 3196 5.946298 CGTATACTTATCCCTATGAACGCA 58.054 41.667 0.56 0.00 0.00 5.24
2818 3197 4.797349 GCGTATACTTATCCCTATGAACGC 59.203 45.833 0.56 0.00 43.94 4.84
2819 3198 5.026462 CGCGTATACTTATCCCTATGAACG 58.974 45.833 0.00 0.00 0.00 3.95
2820 3199 4.797349 GCGCGTATACTTATCCCTATGAAC 59.203 45.833 8.43 0.00 0.00 3.18
2821 3200 4.437794 CGCGCGTATACTTATCCCTATGAA 60.438 45.833 24.19 0.00 0.00 2.57
2822 3201 3.064408 CGCGCGTATACTTATCCCTATGA 59.936 47.826 24.19 0.00 0.00 2.15
2823 3202 3.181503 ACGCGCGTATACTTATCCCTATG 60.182 47.826 37.08 0.00 0.00 2.23
2824 3203 3.012518 ACGCGCGTATACTTATCCCTAT 58.987 45.455 37.08 2.39 0.00 2.57
2825 3204 2.160219 CACGCGCGTATACTTATCCCTA 59.840 50.000 37.24 0.00 0.00 3.53
2826 3205 1.068748 CACGCGCGTATACTTATCCCT 60.069 52.381 37.24 4.71 0.00 4.20
2827 3206 1.334054 CACGCGCGTATACTTATCCC 58.666 55.000 37.24 0.00 0.00 3.85
2828 3207 2.042104 ACACGCGCGTATACTTATCC 57.958 50.000 37.24 0.00 0.00 2.59
2829 3208 7.848051 ACTTATATACACGCGCGTATACTTATC 59.152 37.037 37.24 0.00 37.20 1.75
2830 3209 7.637519 CACTTATATACACGCGCGTATACTTAT 59.362 37.037 37.24 24.54 37.20 1.73
2831 3210 6.955407 CACTTATATACACGCGCGTATACTTA 59.045 38.462 37.24 19.38 37.20 2.24
2832 3211 5.791974 CACTTATATACACGCGCGTATACTT 59.208 40.000 37.24 21.29 37.20 2.24
2833 3212 5.106948 ACACTTATATACACGCGCGTATACT 60.107 40.000 37.24 21.50 37.20 2.12
2834 3213 5.082059 ACACTTATATACACGCGCGTATAC 58.918 41.667 37.24 0.00 37.20 1.47
2835 3214 5.281693 ACACTTATATACACGCGCGTATA 57.718 39.130 37.24 30.75 38.39 1.47
2836 3215 4.151258 ACACTTATATACACGCGCGTAT 57.849 40.909 37.24 29.37 36.13 3.06
2837 3216 3.607422 ACACTTATATACACGCGCGTA 57.393 42.857 37.24 22.76 0.00 4.42
2838 3217 2.480224 ACACTTATATACACGCGCGT 57.520 45.000 32.73 32.73 0.00 6.01
2839 3218 3.518544 CAAACACTTATATACACGCGCG 58.481 45.455 30.96 30.96 0.00 6.86
2840 3219 3.277481 GCAAACACTTATATACACGCGC 58.723 45.455 5.73 0.00 0.00 6.86
2841 3220 3.000476 ACGCAAACACTTATATACACGCG 60.000 43.478 3.53 3.53 44.14 6.01
2842 3221 4.266976 AGACGCAAACACTTATATACACGC 59.733 41.667 0.00 0.00 0.00 5.34
2843 3222 5.287752 ACAGACGCAAACACTTATATACACG 59.712 40.000 0.00 0.00 0.00 4.49
2844 3223 6.642683 ACAGACGCAAACACTTATATACAC 57.357 37.500 0.00 0.00 0.00 2.90
2845 3224 7.541162 AGTACAGACGCAAACACTTATATACA 58.459 34.615 0.00 0.00 0.00 2.29
2846 3225 7.982371 AGTACAGACGCAAACACTTATATAC 57.018 36.000 0.00 0.00 0.00 1.47
2847 3226 9.673454 CATAGTACAGACGCAAACACTTATATA 57.327 33.333 0.00 0.00 0.00 0.86
2848 3227 8.195436 ACATAGTACAGACGCAAACACTTATAT 58.805 33.333 0.00 0.00 0.00 0.86
2849 3228 7.541162 ACATAGTACAGACGCAAACACTTATA 58.459 34.615 0.00 0.00 0.00 0.98
2850 3229 6.395629 ACATAGTACAGACGCAAACACTTAT 58.604 36.000 0.00 0.00 0.00 1.73
2851 3230 5.775686 ACATAGTACAGACGCAAACACTTA 58.224 37.500 0.00 0.00 0.00 2.24
2852 3231 4.628074 ACATAGTACAGACGCAAACACTT 58.372 39.130 0.00 0.00 0.00 3.16
2853 3232 4.252971 ACATAGTACAGACGCAAACACT 57.747 40.909 0.00 0.00 0.00 3.55
2854 3233 4.985044 AACATAGTACAGACGCAAACAC 57.015 40.909 0.00 0.00 0.00 3.32
2855 3234 7.479897 TTTTAACATAGTACAGACGCAAACA 57.520 32.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.