>input_sequence_66240
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-----------------------------------------------CGCCGCCGGAGACAACCACCAAACCCACGCATC
CCCAGCTCCCCTCGCCTCCTCTTTCCACAG----CGCGGCGCCGATGGCCACGGCACACTGCTACCCGCCGCCG---CCG
CCCATCGCCCACGCGCTTCCAAGGCCGCACGCCGCCGACGGCGCCGTTGCCCTCCTCCCCGACGACGGCGGCAGCGACAG
CGAGAGCGTGGCCGAGTCGTCGTGCCCGCACCCGCGCGTGCGCCGGCCGACGGCGAGCCGGGACGAGGAGGAGGAGGAGG
A---CAACGACGGGTGCAGCAGCTGCGTGGAGGTGGACGAGTACTGGGGCTACTACCAGCAGCAGCAACAGCAGCATCCG
CAGGAAGCCGACGACGAGGAGGAGGTCAGCACGTTGAGCGTCTGGTGGAAGAAGAAACGGGCGGCGGCGGCGGCTAGTAG
GGCTGGCGGCGCGTTCCCCTCGGCGTTCCCCTCGGCGGTGGGTGGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGC
GGGCGGCGGCGCGGCAGGAGGAGGACCGCAAGTTCTGGGCCGACTGCCTCGCCACCGGGTACCCCTGAAACCCAGGAA--
--AAGCCATAGGTCGGCATGCAAAGGCCATGGCAAAGAAGCCATGAGCGCCGCCAACCGAAACTGCAGCCGCTCAACCCA
AGCGTATGCCTACCTTTGTTTGTTTCTTTCCATTTTTCTTTTGATTTCCTTGTACATA------ATATTCAACGGAACTC
CTCAACAAGCCACTGGGTGGCGTATTTTGACCCCCGTAAAGCTCTACAGAAAGACTCGATCTTCTTCTTCTTTTCTTGTC
------------------------------------------------------GTTGCGGGTGAAAGAATTGAATTGAA
TCTCCGTGCAAACTAGTACTA-----------------------------------------------------------
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---------------------CTAGAAAATACATTTTTCTTTTCTTA---------------------------------
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>chr2A_1_TraesCS2A01G123700
TCCTTGCTTATTAACATGTATTTTTTTCTTCCTTATTTGTACAAAGTGAAGAGTATATGATTAATATCAATAATTACCAT
TGTTGTA----TTTCGTTCTTATCACCATCCATTAATTAAGTAGTATTATTTTCTTCCTTGTTTTTCTAAGGTGTAGATT
ATATGATCAGTATCAATAATTTACCATTGTC---ATATTTCCTTACTTACCCTCAACCATTGACTACACAATATTTTCTT
CCTTATATGTAGTAGGTGGAGATTATATGATCAATATCAATAATTACCAAGGTTATTTGCTTACT------TAC------
--CCTCAACCATTGATTACACAATATTTTTTTCCTTATATGTACTGGT---TGAAGATTATATGATCAATATCACTAATT
ACCATTGTTATTTACTTACCTACCACCATCTAGTAATTACATATTATTTTCTTCTATACTTGTACGTACTAGGTGAAGAT
TATACTGATCGATGTCATTAATTATTAAAATTTGAAAAGT--ATCCTCATATAAAAATTGGCAAACAAAAAATTTGGGGC
AAAATGGTAAACAAAATTGACTACTGCTCCCCAC-TTCACAAATATAAGAT-----------------------------
----------------------------ATATTCTAACTTTTTCCTGAATCAGATGTATATAGACATATTTTAATATGTT
TGCTTACTCATTTTAATCCGTTTGTAGATCATATTAAAATGTCCAAAAGATCTCATATTTGTGGACGGAGGAAGTACATC
ATTCTAG--AAAAAGTACAATAGAAATGATGCAAAGGCTGACCAAGGATTTCCTACATATATTATCCTGAACTCACACCA
ACTGTCCAACATAATCCGAGGGTTTCAGTAGACCAACTAAAACCCAATAGTT-TATCGGCATGGGCATCGTCGTCGTCTT
TTTTCCAATTTTTGCGTGTGGCGAAGCAGTGGGAAGCTCTAGCACTCGTGCCATCGACCGCACTCCATTCATACCCTTTT
AAAAACCGTGGGTGCGCGCTATAAATACCAAGGGTCTCCGTCCACCTCGCCGCCGGAGACAACCACCAAACCCACGCATC
CCCAGCTCCCCTCGCCTCCTCTTTCCACAG----CGCGGCGCCGATGGCCACGGCACACTGCTACCCGCCGCCG---CCG
CCCATCGCCCACGCGCTTCCAAGGCCGCACGCCGCCGACGGCGCCGTTGCCCTCCTCCCCGACGACGGCGGCAGCGACAG
CGAGAGCGTGGCCGAGTCGTCGTGCCCGCACCCGCGCGTGCGCCGGCCGACGGCGAGCCGGGACGAGGAGGAGGAGGAGG
A---CAACGACGGGTGCAGCAGCTGCGTGGAGGTGGACGAGTACTGGGGCTACTACCAGCAGCAGCAACAGCAGCATCCG
CAGGAAGCCGACGACGAGGAGGAGGTCAGCACGTTGAGCGTCTGGTGGAAGAAGAAACGGGCGGCGGCGGCGGCTAGTAG
GGCTGGCGGCGCGTTCCCCTCGGCGTTCCCCTCGGCGGTGGGTGGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGC
GGGCGGCGGCGCGGCAGGAGGAGGACCGCAAGTTCTGGGCCGACTGCCTCGCCACCGGGTACCCCTGAAACCCAGGAA--
--AAGCCATAGGTCGGCATGCAAAGGCCATGGCAAAGAAGCCATGAGCGCCGCCAACCGAAACTGCAGCCGCTCAACCCA
AGCGTATGCCTACCTTTGTTTGTTTCTTTCCATTTTTCTTTTGATTTCCTTGTACATA------ATATTCAACGGAACTC
CTCAACAAGCCACTGGGTGGCGTATTTTGACCCCCGTAAAGCTCTACAGAAAGACTCGATCTTCTTCTTCTTTTCTTGTC
------------------------------------------------------GTTGCGGGTGAAAGAATTGAATTGAA
TCTCCGTGCAAACTAGTACTA-----------------------------------------------------------
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---------------------CTAGAAAATACATTTTTCTTTTCTTAGCTTGGTCTAGATGGGGGGTGGTCAATTAAAGC
AGCGGCGGGACGCCAGGGCCAG-------TGGCATTGCCGGCGGCCACCAACCGGTGGAGGGGCATGGGTGC------CA
GGAGAGGTGGCAGGCAAGGAGATCTCCTCCGCCTCCGCCGCTTTAAATCCCCGTCCTTCCTCGTCAAACTCCCAATT---
-GGACACACGCACGGCGGCCGATCACCGACGGGGCATGGCAT--------TCCGTCCGTCCTAGGCTCATGCA---GTAG
GTCCTAGCCCGG---ATCGCGGGGCCTCCGGTGGAACGTGCGCCGGTTGCGCGCGCCAACGACCGGCGGGGAATATGGTC
CACGCTCGGCCGCGTAACCATGTGTGTGTGTGTGTGTGTTTATGATGGGTTTGGTGCGTAAAGCGGCCGGGGTTAAATAA
GGGGGGCAAGGCCAAGCTGCTGTTGCTTCTCCTTGAGAAAGATGG-------TTTCAGTTATGTTTAAAAGAAAACTGGC
GGCTGTTGCTCAGCTTCTTTCTTTCTTTCCGAGCTACAGCTGGTACTGTAGTTGGCTTTATAGAAAGACAGCACGTGTGG
CACGCAGCTGACCATGTTTTCTAGAAAGTCTAGCACCTAAGGCATTGTCATAGGTGCCGGCATCCCACAAAACTCATCGA
TTAAGAAACATGCATG-----------AAATGGAGCGGAAACTTTCTGTTGT-------AGAAAAACAGAAACGGAGAGA
AAAAACAGAAA-TGAAAGGGCAGTTCATAAAACAAAAACGAAAACAGAATTTTTTATGCGTGTTGGATGATTAGAGGGAC
TGTGGTATCCTCAGCCCATCAGGGTTCAAATCCTATTGCTCGCATTTATTTCTGAATTTATTTTAGGATTTTTGGCGATG
CGCATTCAGTGAAAGGAGACGTGATATGCCGGCTCAGTCTTTCGGAGGTGCTCATAGGAGTAAGGTGTGCGTGTGTGCGT
TCATAGGGATAAGTATACGCGCGTGTATATAAGTGTTTGCGTCTGTACTATGTTAAAAAAAAAA
>chr2D_16
---------------ATGTATTATTTTCTTGCTTGTTTGTACCAGGTGAAGATTGTATGATCAATATCAATAATTACCAT
TGTTGTAGTATTTCCTTACTTATCATCAACCATTAATTAC---GTATTATTTTCTTCCTTATTTGTCTAAGGTGTAGATT
ATATGATCAGTATCAATAATT-ACCATTGTCATAATATTTCCTTGCTTACCCTCAACCATAGATTAAGCAATATTTTCTT
CCTTATATGTACTAGGTGAAGATTATATGATCAATATCAATAATTACCGCGGTTATTTGCTTACTCCTACTTAC------
--CCTCAACCATTGATTACACAATATTTTCTTCCTTATATGTACTAGTAGGTGAAGATTATATGATCACTATCATTAATT
ACCATTGTTATTTACTTACTTACCATCATCTAGTAATTACATAACATTTTCTTCCATATTAGTACGTACCAGGTGAAGAT
TATA-TGATCAATGTCATTAATTATTAAAATCTGAAAAAT--ATTCTCATATAAAAAATGGAAAACAAAAATTTTGCGGG
AAAATGGTAAGAAAAATTGACCACTATTCCCTCCGTTCACAAAATAAGAGGTTCTAACT---------------------
--------------------------------------TTTTTC-TGATTCGGATGTATATAGACATATTTTAATATGTT
TGTTCACTCATTTTAGCCCGTACGTAGACCATATTGAAATGTTCAAAACGTCTTATATTCATGAACGGATGAAGTACATC
ATTTCTAAAAAAAAGTACAATAGAAATGATGCAAAGGCTGACCAAGGATTTCCTATATATAATATCCTGAACTCACACCA
ACTGTCCAACATAATCTGAGGGTTTCAGTAGACCAACTAAAATCCAATAGTT-TATGGGCATCGGCATCGTCATCGTCTT
TTTTCCAA-TTTTGCGTGTGGCGAAGCAGTGGGAAGCTCCAGCACTCGTGCCATCGACCGCACTCCATTTATATACTTTT
AGAAACCGTGGGTGCGTGCTATAAATACCAAGGGTCTCCGTCCAGCTCGCCGCCGGAGACAACCACCAAACCCACGCG--
------TCCCCTCCCCTCCTCTTTCCACAG----CGCGGCGCCGATGGCCACGGCGCACTACTACCCGCCGCCGCCGCCG
CCGATCGCCCACCCGCTTCCAAGGCCGCACGCCGCCGACAACGCCG---------TCCCCGACGACGGCGGCAGCGACAG
CGAGAGCGTGGCGGAGTCGTCGTGCCCGCACCAGCACCCGCGCCGGCCGACGGCCA---GGGACGAGGAGGAGGAGGAGG
A---CGGGTGCA---GCGGCAGCTGCGTGGAGGCGGACGAGTACTGGGGCTACTACTAC---CAGCAGCAGCAGCATCCG
CAGGAAGCCGACGACGAGGAGGAGGTCAGCACGGCGAGCGTCTGGTGGAAGAAGAAACGGGCAGCGGCGGCGGCTGGTAG
GGCCGGCGGCGTGTTCCCTTCGTCTTCGTCGGCTGCGGCCCGTCGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGC
GGGCGGCGGCGCGGCAGGAGGAGGACCGCAAGTTCTGGGCGGACTGCCTCGCCACCGGGTACCCATG----------A--
--AAGCCATAGCTCAGCATGCAAAGGCCATGGCAAA-AAGCCATGAGCGCCGCTAACCGAAACTGCAGCCCG---ACCCA
AGCGTATGCCTACCTTTGTTTGTTTGTTTG---------TTTGTTTTCTTTGTACATACATAATATATTC-----AACTC
CTCAACAAGTCATTGGGTGGCGTATTTTGACCCCCGT-AAGCTTTACAGAAAGAATCGATCTTCTTCTTCTTTTCTTGTT
TTTTTTAATAGTTTGGATTGCTTACCACATGTGTCAGGTGGTTCTTTTCTTGTTGTTGAGGGCGAAA-----GAATTGAA
TCTCTGTGCAAACTAGTACGTAGTAGAAAATAGAGAACTGCTATACAGACGACATTCACAGACGATTTCAGCACGACACT
CCATCTCACACCATTCATTCAAGACACCAATGTACAGAAAGTTGTTGGATTTGAAATCGGCTCAGGATCGTGCAAGCAAA
TATCGTCTGTGAAGTAGTTTCGTAGAAAATACAGTGCATTTTGCTTCCTTGTTG-TAGATGGGGGGTGGTCAATTAAAGC
AGCGGTGGGACGC---------------------------------ACCAACCGGTCGAGAGACATGG------------
---GAGGTGGCAGGCAAGGAGATCTC-------TCCGCCGCTTTAAATTCCCGTCCTTCCTCGTCAAACTCCCAATTGGA
CGGACAGACAGACGGTGGCCGATCACCGACGGAGCATCGCATTCCGTCCGTCCGTCCGTCCTAGGCTCATGTTCATGTAG
GTCCTAGCCCGGGGGATCGCGGGGCCT---GTGGAACGTGCGTCAGTTGCGCGCGCCAACGACCGGCGGGGAATATGGTC
CACGCTCGGCCGCGTAACCA--------TGTGTGTGTGTTTATGATGGTTTTGGTGCGTAAAGCGGCCCGAGTTAAATAA
AGGGGGCAAAGCCAAGCTGCGGTTGCTTGTCCAATGGAAAGATGGTTTTCCCTTTTAATTATGTTTAAAAAAAA-CTGGC
GGCTGTTGCTCAGCTTCTTTCTTTCTTTCCGAGCTACAGCTAGTACTGTGGTTGGCTTTATAGGAAGACAGCACGTGTGG
CACGCCCCTGACCATGGTTTCCAGCATGTCTAGCACCT-AGGCATTGTCATAGGCGCCGGCATCC---------------
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>chr2B_16
---------------ATGTATTATTTTCTTCCTTATTTGTGCAATGTGAAGATTATATGATCAATATCAATAACTACCAT
TGTTTAC---TTTCCTTACCTATCATCATCCATTAATTAT---GTGTTATTTTCTTCCTTATTTTTCTAAGGTGTAGATT
ATATGATCAGTATCAATAATT-ACCATTGTT---ACATTTCCTTATTATCACCAGCCATTAATTTTGTATTA---TTTTT
CCTTATTTGAACGAGGTGAATATTATATGATCAATATCAATAATTACCACGGTTATTTGCTTACG------TACCCTCAA
GGCCTCAACCATTGGTTACACAATATTATCTTCCTTATATGTACC---AGGTGAAGATTATATGATCAATATCATCAATT
ACCATTGTTATTTACTTATTTAGCATCATCTACTAATTACATATTATTTTCTTCCATACTTGTACGTACTAGGTGAAGAT
TATA-TGATCAATGTCATTAATTATTAAAAATTGAAAAAAAGATCCTCATATAAAAATGCCAAAC--AAAAAATTGCAGG
GAAATCGTAAACAAGATTGACCATTGCTTCCTCCGTTCACAAATACTCCATCCGTTCCGATTTACTCGTCGTGGTTTTAC
TAAAACCATGACGAGTAAATCGGAACGGATATTCTAACTTTTTC-TGAATTGAATGTATATAGACATATTTTAATGTGTT
TATTCGCTCATTTTAGTCCGTGTGTAGATCATATTAAAATGTCCAAAAGATTTTATATTTATGAACGGAGGGAGTACATT
GTTCTAAAG---AAGTACAATAGAAATGATGCAAAGGCTGACCAAGGATTTCCTATATATATTATCCTGAACTCACACCA
ACTGTCCAACATAATCTGAGGGTTTCAGTAGACCAACTAAAATCCAATAGTTTTATCGGCATCGGCATCGGCATCGTCTT
TTTTACAA-TTTTTGCGTGTGGGAAGCAGTGGGAAACTCCAGCACTCGTGCCATCGACCGCACTCCATTTACATCCTTTT
TAAAACCGTGGGTGCGCGCTATAAATACCAAGGGTCTCCGTCCACCTCGCCGCCGGAGACAACCACCAAACCCACGCATC
CCC--------TCCCCTCCTCCTTCCACAGCGAGCGCGGCGCCGATGGCCACGGCACACTGTTACCCGCCGCCG---CCG
CCCATCGCCCACGCGCTTCCAAGGCCGCACGCCGCCGACAGCGCCGTCGCCCTCCTCCCCGACGACGGCGGCAGCGACAG
CGAGAGCGTGGCGGAGTCGTCGTGCCCGCACCCGC------GCCGGCCGACGGCGAGCGGGGACGAGGAGGAGGAGGAGG
AGGACGGGTGCA---GCGGCAGCTGCGTGGAGGCGGACGAGTACTGGGGG---TACTAC---CAGCAGCAGCAGCATCCG
CAGGAAGCCGACGAAGAGGAGGAGGTCAGCACGGCGAGCGTCTGGTGGAAGAAGAAACGGGCGGCGGCGGCGGCTGGTAG
GGCCGGCGGCGCGTTCCCCTCGGCGGTGGGG------------CGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGC
GGGCGGCGGCGCGGCAGGAGGAGGACCGCAAGTTCTGGGCGGACTGCCTCGCCACAGGGTACCCATGAACGGACCCCGGG
GGAAGCCATAGCTCGGCATGCAAAGGCCATGGCAAA-AAGCCATGAGCGCCGCTAACCGAAACTGCAGCCCG---ACCCA
AGCGTATGTCTACCTTT------TTTTTTG---------TTTCTTTTCTTTGTACAGA------ATATTC-----AACTC
CTCAACAAGTCATTGGGTGGCGTATTTTGACCCCCGC-AAGCTTTACAGAAAGAATTGATCTTCTCTTTAG---------
-------------------------------------------------TTGTTGTTGAGGGTGAAA-----GGATTGAA
TTTCTGTGCAAACCTAGTA-A-----------------------------------------------------------
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---------------------GTAGAAAACACTGTGCATTTTTGTTCCTTGTTT-TAGATGGGGGGTGGTCAATTAAAGC
AGCGGTGGGACGCCAAAGCCAGTGGCCAATGGCATTGCCGGCGGCCACCAACCGGTGGAGAGACATGGGACATGGGTGCA
GGAGAGGTGGCAGGCAAGGAGATCTC-------TCGTCCGCTTTAAATTCCCGCCCTTCCTCGTCAAACTCCCAATTGGA
CAGACAGAC----GGTGGCCGATCACCGACGGAGCATCGCATTCCGTCCGTCCGTGCGTCCTAGGCTCATGTTCATGTAG
GTCCTAGCCCGG---ATCGCGGGGCCT---GTGGAACGTGCGTCAGTTGCGCGCGCCAACGACCGGTGGCGAGTATGGTC
CAAGCTCGGCCGCGTAACCA------------TGTGTGTTTATGATGGGTTTGGTGCGTAAAGCGGCCAGAGTTATTTAA
AGGGGGCAAAGCCAAGCTGCGGTTGCTTGTCCAATGGAAAGATGGTTTTCCCTTTTAATTATGTTATAAACCGGTGGCTT
CT------------TTCTTTCTTTCTTTCCGAGCTACAGCTAGTACTGTAGTTGGC-TTATACAAAGACAGCACGTGTGG
CACGCCCTTGACCATGTTTTCCAGAATGCCTAGCACCG-AGGCATTGTCATAGGTGCCGGCTTCCCAGGAAACTCGTCGC
TTAAAAAACAGGCATATGAAGAGACGAAAATGAAGCGGAAACTTTCCGGTTTTTTCAGCAGGAAAATAGAAATGGAGAGG
AAAAAAGGAAAATGAAAGCGCAATTCACAAAACAGAAACGGAAATGGATTTTTTT-------------------------
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>SNPs
SSSSSSSSSSSSSSS-------S---------------------S-------S--------S------------------
-------------S-S-S-------S-------------SSSS-----------------S-------------------
---------------------S--------------------------------------S--S--SS------------
-----------S------S------------------------------S------------------------------
-----------------------------S---------------S----------------------------S-----
-------------------S-----S----------------------------S-------------------------
----S-----S---------------------------S----------------------S--------------S--S
---------------------S---------SS------------S-SS-------------------------------
--------------------------------------------S------S----------------------------
--S-S----------S-----S-------------------------------S------S--S----------------
------S------------------------------------------------S------------------------
----------------S-------------------------S-------------------S---------S-------
--------S------------------------------S-----------------------------S---S------
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---SSS-------S------------------------------------------------------------------
---------------------------------------S-------S--------------------------------
------------S----------------------S-SS-------------------S---------------------
-----SSSSS-SSSS--S---------------S----------------------S-SSSS-----S------------
---------------------------------SS----------------------------------------S----
---S-----------------------SS-SS-S----SSS--S------------------------------------
----------------------------------------S-----------------------S----SSSSSSSS---
-----------S------------------------S----------------S----------------SSSSS-----
-------------------------S---SSSSSSSSSS----S----S---------------------SSSSS-----
---------S--S------------------------S-----S----------S------------------------S
----------------------------------------------------------S--------SSSSS--------
----S--------------S------------------------------------------------------------
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---------------------S-----------S-SSSS-------SSS-SSS-S-------------------------
-----S---------SS-------------------------------------------S-S------SSS--------
--------------------------SSSSSSS---------------S-------------------------------
------S--SS----S----------------S----S---------------------------------SS-------
---------------------------SSS------------S-S-----------------------------------
--------------------SSSSSSSS----------------------------------------S-S---------
S--------S----------S-------S---SSSS-------------------S-S------------S---S-----
-----------------------------------------S--------------------------------------
-----SS--------------S----S-----------S----------------------------SS------S---S
----S-----S----S----------------S-------------S-S-S----------S----S-----S------S
-----SS-----------S---S----S------S-----S---SS--S------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1030
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--------------------------------------------------CCATCGACCGCACTCCATTC----------
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>reverse_3176
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-------------------------------------------------------AGGAGTAAGGTGTGCGTGTG-----
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