AutoCloner

Multiple sequence alignment - TraesCS2A01G113400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G113400	chr2A	100.000	3146	0	0	1	3146	64347686	64350831	0.000000e+00	5810.0
1	TraesCS2A01G113400	chr2A	99.924	1315	1	0	1	1315	64013694	64012380	0.000000e+00	2423.0
2	TraesCS2A01G113400	chr2A	97.106	622	14	3	2	623	758562940	758562323	0.000000e+00	1046.0
3	TraesCS2A01G113400	chr2D	94.405	1841	55	25	973	2789	63216222	63218038	0.000000e+00	2785.0
4	TraesCS2A01G113400	chr2D	90.361	332	19	11	640	968	63215788	63216109	1.040000e-114	424.0
5	TraesCS2A01G113400	chr2D	91.667	252	11	5	2852	3095	63218118	63218367	1.080000e-89	340.0
6	TraesCS2A01G113400	chr2D	82.515	326	47	4	997	1312	67576109	67576434	8.590000e-71	278.0
7	TraesCS2A01G113400	chr2D	100.000	30	0	0	2832	2861	63218045	63218074	4.380000e-04	56.5
8	TraesCS2A01G113400	chr4D	91.654	647	26	6	2	623	109916684	109917327	0.000000e+00	870.0
9	TraesCS2A01G113400	chr4D	100.000	44	0	0	2790	2833	432949930	432949973	7.230000e-12	82.4
10	TraesCS2A01G113400	chr4A	91.388	627	21	8	21	623	626333839	626333222	0.000000e+00	828.0
11	TraesCS2A01G113400	chr5B	89.645	647	39	6	2	623	306419251	306418608	0.000000e+00	798.0
12	TraesCS2A01G113400	chr5D	89.181	647	41	8	2	623	536358683	536358041	0.000000e+00	780.0
13	TraesCS2A01G113400	chr5D	100.000	44	0	0	2790	2833	432308683	432308726	7.230000e-12	82.4
14	TraesCS2A01G113400	chr5D	100.000	44	0	0	2790	2833	503327201	503327158	7.230000e-12	82.4
15	TraesCS2A01G113400	chr3D	88.923	650	42	7	2	624	571046707	571047353	0.000000e+00	774.0
16	TraesCS2A01G113400	chr1B	89.008	655	27	7	2	634	272873966	272873335	0.000000e+00	769.0
17	TraesCS2A01G113400	chr6B	85.737	624	70	14	2	618	599984082	599984693	2.650000e-180	641.0
18	TraesCS2A01G113400	chr1A	84.389	647	54	26	14	627	255006744	255006112	2.700000e-165	592.0
19	TraesCS2A01G113400	chr1A	100.000	44	0	0	2790	2833	554451521	554451564	7.230000e-12	82.4
20	TraesCS2A01G113400	chr3B	91.176	136	12	0	3011	3146	735618662	735618527	5.360000e-43	185.0
21	TraesCS2A01G113400	chrUn	100.000	44	0	0	2790	2833	30304726	30304769	7.230000e-12	82.4
22	TraesCS2A01G113400	chrUn	100.000	44	0	0	2790	2833	425830667	425830624	7.230000e-12	82.4
23	TraesCS2A01G113400	chr4B	100.000	44	0	0	2790	2833	70583297	70583340	7.230000e-12	82.4
24	TraesCS2A01G113400	chr1D	100.000	44	0	0	2790	2833	244764800	244764757	7.230000e-12	82.4
25	TraesCS2A01G113400	chr1D	100.000	44	0	0	2790	2833	254473108	254473065	7.230000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G113400	chr2A	64347686	64350831	3145	False	5810.000	5810	100.00000	1	3146	1	chr2A.!!$F1	3145
1	TraesCS2A01G113400	chr2A	64012380	64013694	1314	True	2423.000	2423	99.92400	1	1315	1	chr2A.!!$R1	1314
2	TraesCS2A01G113400	chr2A	758562323	758562940	617	True	1046.000	1046	97.10600	2	623	1	chr2A.!!$R2	621
3	TraesCS2A01G113400	chr2D	63215788	63218367	2579	False	901.375	2785	94.10825	640	3095	4	chr2D.!!$F2	2455
4	TraesCS2A01G113400	chr4D	109916684	109917327	643	False	870.000	870	91.65400	2	623	1	chr4D.!!$F1	621
5	TraesCS2A01G113400	chr4A	626333222	626333839	617	True	828.000	828	91.38800	21	623	1	chr4A.!!$R1	602
6	TraesCS2A01G113400	chr5B	306418608	306419251	643	True	798.000	798	89.64500	2	623	1	chr5B.!!$R1	621
7	TraesCS2A01G113400	chr5D	536358041	536358683	642	True	780.000	780	89.18100	2	623	1	chr5D.!!$R2	621
8	TraesCS2A01G113400	chr3D	571046707	571047353	646	False	774.000	774	88.92300	2	624	1	chr3D.!!$F1	622
9	TraesCS2A01G113400	chr1B	272873335	272873966	631	True	769.000	769	89.00800	2	634	1	chr1B.!!$R1	632
10	TraesCS2A01G113400	chr6B	599984082	599984693	611	False	641.000	641	85.73700	2	618	1	chr6B.!!$F1	616
11	TraesCS2A01G113400	chr1A	255006112	255006744	632	True	592.000	592	84.38900	14	627	1	chr1A.!!$R1	613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1388	1604	0.105593	AGCCTGTATGTCATGGCGAG	59.894	55.0	6.94	0.0	41.64	5.03	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
3123	3419	0.890683	GCCTAACATGCTTTGGTGCT	59.109	50.0	0.0	0.0	0.0	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1388	1604	0.105593	AGCCTGTATGTCATGGCGAG	59.894	55.000	6.94	0.0	41.64	5.03
1517	1733	3.181483	CCTTGCTTTGATTATGAGGGTGC	60.181	47.826	0.00	0.0	0.00	5.01
1519	1735	4.502105	TGCTTTGATTATGAGGGTGCTA	57.498	40.909	0.00	0.0	0.00	3.49
1548	1764	1.039068	CGGATCTGCCTCACTCTGAT	58.961	55.000	0.00	0.0	0.00	2.90
1569	1785	0.383590	ACGACTCGGATGCTGATGAG	59.616	55.000	2.98	0.0	34.65	2.90
1604	1820	3.885724	TTACACGGATTCTGCAGATGA	57.114	42.857	19.04	3.4	0.00	2.92
1623	1839	6.372381	CAGATGATACAAACACCAATGAGTCA	59.628	38.462	0.00	0.0	0.00	3.41
1717	1933	1.654105	GCACGTACTCCTTTGACATCG	59.346	52.381	0.00	0.0	0.00	3.84
1745	1961	2.045926	GTGGAGCAAGGTCGGCAT	60.046	61.111	0.00	0.0	0.00	4.40
1938	2154	2.738743	TCCCATCTTCTTCATTTGGGC	58.261	47.619	1.31	0.0	45.53	5.36
2040	2264	0.598065	ATGAAGGTTTTGCCGTGCTC	59.402	50.000	0.00	0.0	43.70	4.26
2091	2315	3.814283	GCATTGGAGACCTTCAGATGATC	59.186	47.826	0.00	0.0	0.00	2.92
2108	2332	1.814394	GATCAAGCACAAGTCCATGCA	59.186	47.619	0.00	0.0	44.59	3.96
2157	2381	1.667212	CTGCTGTGATATTGCAAGCGA	59.333	47.619	4.94	0.0	36.22	4.93
2163	2387	5.469373	TGTGATATTGCAAGCGAGTTTAG	57.531	39.130	4.94	0.0	0.00	1.85
2180	2404	6.564873	CGAGTTTAGAGCAAGGACTTCTTTTG	60.565	42.308	0.00	0.0	32.41	2.44
2383	2613	1.573829	TTTGCTGCGCCGGTAAAGAG	61.574	55.000	4.18	0.0	0.00	2.85
2391	2621	2.284417	GCGCCGGTAAAGAGTAATGAAG	59.716	50.000	1.90	0.0	0.00	3.02
2452	2682	6.109156	TCTTAGATGAGTGGCAAAGTACAA	57.891	37.500	0.00	0.0	0.00	2.41
2453	2683	6.166279	TCTTAGATGAGTGGCAAAGTACAAG	58.834	40.000	0.00	0.0	0.00	3.16
2454	2684	4.357918	AGATGAGTGGCAAAGTACAAGT	57.642	40.909	0.00	0.0	0.00	3.16
2458	2688	5.243426	TGAGTGGCAAAGTACAAGTTTTC	57.757	39.130	0.00	0.0	0.00	2.29
2475	2707	9.918630	ACAAGTTTTCATTCCATTCAAATCTAG	57.081	29.630	0.00	0.0	0.00	2.43
2632	2867	7.656412	TCTGCAAAGCTTAATCACAAACAATA	58.344	30.769	0.00	0.0	0.00	1.90
2703	2938	9.520515	ACAGATAGTGATAAAAGGTTGTTCAAT	57.479	29.630	0.00	0.0	0.00	2.57
2767	3002	1.261619	GTTCGCTTCCTGTCACACAAG	59.738	52.381	0.00	0.0	0.00	3.16
2774	3009	3.044235	TCCTGTCACACAAGCATACAG	57.956	47.619	0.00	0.0	37.81	2.74
2948	3237	9.529325	TTCAATTCTAACTGGATACGTAGATTG	57.471	33.333	0.08	0.0	42.51	2.67
3013	3309	6.749923	AAAACTGATTGGAGATGCTTACTC	57.250	37.500	0.00	0.0	0.00	2.59
3045	3341	2.620251	TGGGGACTTCTATTGATGCG	57.380	50.000	0.00	0.0	0.00	4.73
3047	3343	1.141053	GGGGACTTCTATTGATGCGGT	59.859	52.381	0.00	0.0	0.00	5.68
3075	3371	6.374333	TGTTTAAGGCCAGCTAACAAATAGAG	59.626	38.462	5.01	0.0	33.04	2.43
3076	3372	4.844349	AAGGCCAGCTAACAAATAGAGA	57.156	40.909	5.01	0.0	33.04	3.10
3084	3380	7.659390	GCCAGCTAACAAATAGAGACATAGATT	59.341	37.037	0.00	0.0	33.04	2.40
3098	3394	9.730705	AGAGACATAGATTCTGAAAAATGAACA	57.269	29.630	13.53	0.0	0.00	3.18
3127	3423	8.936864	ACAGAGTAAAATTGTAGACATTAGCAC	58.063	33.333	0.00	0.0	0.00	4.40
3128	3424	8.391106	CAGAGTAAAATTGTAGACATTAGCACC	58.609	37.037	0.00	0.0	0.00	5.01
3129	3425	8.100791	AGAGTAAAATTGTAGACATTAGCACCA	58.899	33.333	0.00	0.0	0.00	4.17
3130	3426	8.630054	AGTAAAATTGTAGACATTAGCACCAA	57.370	30.769	0.00	0.0	0.00	3.67
3131	3427	9.073475	AGTAAAATTGTAGACATTAGCACCAAA	57.927	29.630	0.00	0.0	0.00	3.28
3132	3428	9.341899	GTAAAATTGTAGACATTAGCACCAAAG	57.658	33.333	0.00	0.0	0.00	2.77
3133	3429	5.567138	ATTGTAGACATTAGCACCAAAGC	57.433	39.130	0.00	0.0	0.00	3.51
3134	3430	4.014569	TGTAGACATTAGCACCAAAGCA	57.985	40.909	0.00	0.0	36.85	3.91
3135	3431	4.588899	TGTAGACATTAGCACCAAAGCAT	58.411	39.130	0.00	0.0	36.85	3.79
3136	3432	4.395854	TGTAGACATTAGCACCAAAGCATG	59.604	41.667	0.00	0.0	36.85	4.06
3137	3433	3.424703	AGACATTAGCACCAAAGCATGT	58.575	40.909	0.00	0.0	34.87	3.21
3138	3434	3.828451	AGACATTAGCACCAAAGCATGTT	59.172	39.130	0.00	0.0	33.08	2.71
3139	3435	5.009631	AGACATTAGCACCAAAGCATGTTA	58.990	37.500	0.00	0.0	33.08	2.41
3140	3436	5.124457	AGACATTAGCACCAAAGCATGTTAG	59.876	40.000	0.00	0.0	33.08	2.34
3141	3437	4.158394	ACATTAGCACCAAAGCATGTTAGG	59.842	41.667	0.00	0.0	36.85	2.69
3142	3438	0.890683	AGCACCAAAGCATGTTAGGC	59.109	50.000	0.00	0.0	36.85	3.93
3143	3439	0.890683	GCACCAAAGCATGTTAGGCT	59.109	50.000	0.00	0.0	45.15	4.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1388	1604	4.496336	ATCCCAAGCCAGCCTCGC	62.496	66.667	0.00	0.00	0.00	5.03
1402	1618	2.355818	GGAACCATATAAGCCGGGATCC	60.356	54.545	1.92	1.92	35.57	3.36
1449	1665	3.126831	GTCCTGCTGACCTATGAAATCG	58.873	50.000	0.00	0.00	38.09	3.34
1517	1733	4.950050	AGGCAGATCCGACTTGTAATTAG	58.050	43.478	0.00	0.00	40.77	1.73
1519	1735	3.197766	TGAGGCAGATCCGACTTGTAATT	59.802	43.478	0.00	0.00	40.77	1.40
1548	1764	2.021457	TCATCAGCATCCGAGTCGTAA	58.979	47.619	12.31	0.00	0.00	3.18
1569	1785	2.609459	CGTGTAATCAGCATTCCAGTCC	59.391	50.000	0.00	0.00	0.00	3.85
1604	1820	4.518970	GTGGTGACTCATTGGTGTTTGTAT	59.481	41.667	0.00	0.00	0.00	2.29
1717	1933	3.044305	GCTCCACGTGCCACTCAC	61.044	66.667	10.91	0.00	42.23	3.51
1745	1961	4.182433	TGAACGGCAGCACCCACA	62.182	61.111	0.00	0.00	33.26	4.17
1866	2082	2.637872	TGGGTCTTCTAACACCTTCTGG	59.362	50.000	0.00	0.00	39.83	3.86
2040	2264	2.317609	CCGAACTTCCACACCAGCG	61.318	63.158	0.00	0.00	0.00	5.18
2091	2315	2.736144	AATGCATGGACTTGTGCTTG	57.264	45.000	0.00	4.31	41.78	4.01
2108	2332	6.405538	ACGCCATTTTCATCAAAACCATAAT	58.594	32.000	0.00	0.00	34.24	1.28
2157	2381	6.357367	TCAAAAGAAGTCCTTGCTCTAAACT	58.643	36.000	0.00	0.00	34.79	2.66
2186	2410	5.414789	ACAAACAAAAACTGGCCTAAAGT	57.585	34.783	3.32	0.00	0.00	2.66
2235	2460	6.869913	CACAGTAATTCAACAAATCAGCCAAT	59.130	34.615	0.00	0.00	0.00	3.16
2375	2605	8.603242	TGTTTGTCTCTTCATTACTCTTTACC	57.397	34.615	0.00	0.00	0.00	2.85
2441	2671	5.596845	TGGAATGAAAACTTGTACTTTGCC	58.403	37.500	0.00	0.00	0.00	4.52
2454	2684	9.624697	CGAAACTAGATTTGAATGGAATGAAAA	57.375	29.630	0.00	0.00	0.00	2.29
2458	2688	7.320443	TCCGAAACTAGATTTGAATGGAATG	57.680	36.000	0.00	0.00	0.00	2.67
2475	2707	8.128582	TGCTTCATATTTTGATGTATCCGAAAC	58.871	33.333	0.00	0.00	33.34	2.78
2478	2710	7.800155	TTGCTTCATATTTTGATGTATCCGA	57.200	32.000	0.00	0.00	33.34	4.55
2522	2755	6.142818	TGTAAAATGTTCAGTGTCTTTGGG	57.857	37.500	0.00	0.00	0.00	4.12
2564	2797	5.682659	AGATGCATGAATGTTAAGAGCTCT	58.317	37.500	11.45	11.45	0.00	4.09
2565	2798	6.037940	TGAAGATGCATGAATGTTAAGAGCTC	59.962	38.462	2.46	5.27	0.00	4.09
2572	2805	5.063817	CACGAGTGAAGATGCATGAATGTTA	59.936	40.000	2.46	0.00	0.00	2.41
2632	2867	6.909550	TGTTGCCCACTATTGATTAACTTT	57.090	33.333	0.00	0.00	0.00	2.66
2643	2878	4.733165	AGATATTGCATGTTGCCCACTAT	58.267	39.130	0.00	0.00	44.23	2.12
2703	2938	6.716934	ATACTCTCGAAAAGCCAGAGAATA	57.283	37.500	2.22	0.00	40.09	1.75
2811	3046	9.288576	TGCAATTAGCTTGATATGCTTAACTAT	57.711	29.630	0.00	0.00	45.94	2.12
2812	3047	8.675705	TGCAATTAGCTTGATATGCTTAACTA	57.324	30.769	0.00	0.00	45.94	2.24
2813	3048	7.255381	CCTGCAATTAGCTTGATATGCTTAACT	60.255	37.037	0.00	0.00	45.94	2.24
2814	3049	6.860023	CCTGCAATTAGCTTGATATGCTTAAC	59.140	38.462	0.00	0.00	45.94	2.01
2815	3050	6.772233	TCCTGCAATTAGCTTGATATGCTTAA	59.228	34.615	0.00	0.00	45.94	1.85
2816	3051	6.205464	GTCCTGCAATTAGCTTGATATGCTTA	59.795	38.462	0.00	0.00	45.94	3.09
2817	3052	5.009410	GTCCTGCAATTAGCTTGATATGCTT	59.991	40.000	0.00	0.00	45.94	3.91
2818	3053	4.518211	GTCCTGCAATTAGCTTGATATGCT	59.482	41.667	0.00	0.00	45.94	3.79
2819	3054	4.276678	TGTCCTGCAATTAGCTTGATATGC	59.723	41.667	0.00	0.00	45.94	3.14
2820	3055	5.297527	TGTGTCCTGCAATTAGCTTGATATG	59.702	40.000	0.00	0.00	45.94	1.78
2821	3056	5.439721	TGTGTCCTGCAATTAGCTTGATAT	58.560	37.500	0.00	0.00	45.94	1.63
2822	3057	4.842574	TGTGTCCTGCAATTAGCTTGATA	58.157	39.130	0.00	0.00	45.94	2.15
2823	3058	3.689347	TGTGTCCTGCAATTAGCTTGAT	58.311	40.909	0.00	0.00	45.94	2.57
2824	3059	3.138884	TGTGTCCTGCAATTAGCTTGA	57.861	42.857	0.00	0.00	45.94	3.02
2825	3060	3.921119	TTGTGTCCTGCAATTAGCTTG	57.079	42.857	0.00	0.00	45.94	4.01
2826	3061	5.221501	ACAAATTGTGTCCTGCAATTAGCTT	60.222	36.000	0.00	0.00	43.30	3.74
2827	3062	4.281688	ACAAATTGTGTCCTGCAATTAGCT	59.718	37.500	0.00	0.00	43.30	3.32
2828	3063	4.559153	ACAAATTGTGTCCTGCAATTAGC	58.441	39.130	0.00	0.00	43.30	3.09
2829	3064	6.808212	CCTTACAAATTGTGTCCTGCAATTAG	59.192	38.462	9.15	0.00	43.30	1.73
2830	3065	6.491745	TCCTTACAAATTGTGTCCTGCAATTA	59.508	34.615	9.15	0.00	43.30	1.40
2918	3207	9.314321	CTACGTATCCAGTTAGAATTGAATTGT	57.686	33.333	0.00	0.00	0.00	2.71
2919	3208	9.529325	TCTACGTATCCAGTTAGAATTGAATTG	57.471	33.333	0.00	0.00	0.00	2.32
3001	3290	7.519032	AGTCCAATAGTAGAGTAAGCATCTC	57.481	40.000	0.00	0.00	0.00	2.75
3002	3291	7.201956	CCAAGTCCAATAGTAGAGTAAGCATCT	60.202	40.741	0.00	0.00	0.00	2.90
3003	3292	6.926272	CCAAGTCCAATAGTAGAGTAAGCATC	59.074	42.308	0.00	0.00	0.00	3.91
3013	3309	4.717280	AGAAGTCCCCAAGTCCAATAGTAG	59.283	45.833	0.00	0.00	0.00	2.57
3101	3397	8.936864	GTGCTAATGTCTACAATTTTACTCTGT	58.063	33.333	0.00	0.00	0.00	3.41
3102	3398	8.391106	GGTGCTAATGTCTACAATTTTACTCTG	58.609	37.037	0.00	0.00	0.00	3.35
3103	3399	8.100791	TGGTGCTAATGTCTACAATTTTACTCT	58.899	33.333	0.00	0.00	0.00	3.24
3104	3400	8.263940	TGGTGCTAATGTCTACAATTTTACTC	57.736	34.615	0.00	0.00	0.00	2.59
3105	3401	8.630054	TTGGTGCTAATGTCTACAATTTTACT	57.370	30.769	0.00	0.00	0.00	2.24
3106	3402	9.341899	CTTTGGTGCTAATGTCTACAATTTTAC	57.658	33.333	0.00	0.00	0.00	2.01
3107	3403	8.026607	GCTTTGGTGCTAATGTCTACAATTTTA	58.973	33.333	0.00	0.00	0.00	1.52
3108	3404	6.868339	GCTTTGGTGCTAATGTCTACAATTTT	59.132	34.615	0.00	0.00	0.00	1.82
3109	3405	6.015519	TGCTTTGGTGCTAATGTCTACAATTT	60.016	34.615	0.00	0.00	0.00	1.82
3110	3406	5.476599	TGCTTTGGTGCTAATGTCTACAATT	59.523	36.000	0.00	0.00	0.00	2.32
3111	3407	5.009631	TGCTTTGGTGCTAATGTCTACAAT	58.990	37.500	0.00	0.00	0.00	2.71
3112	3408	4.393834	TGCTTTGGTGCTAATGTCTACAA	58.606	39.130	0.00	0.00	0.00	2.41
3113	3409	4.014569	TGCTTTGGTGCTAATGTCTACA	57.985	40.909	0.00	0.00	0.00	2.74
3114	3410	4.396166	ACATGCTTTGGTGCTAATGTCTAC	59.604	41.667	0.00	0.00	27.81	2.59
3115	3411	4.588899	ACATGCTTTGGTGCTAATGTCTA	58.411	39.130	0.00	0.00	27.81	2.59
3116	3412	3.424703	ACATGCTTTGGTGCTAATGTCT	58.575	40.909	0.00	0.00	27.81	3.41
3117	3413	3.855689	ACATGCTTTGGTGCTAATGTC	57.144	42.857	0.00	0.00	27.81	3.06
3118	3414	4.158394	CCTAACATGCTTTGGTGCTAATGT	59.842	41.667	0.00	0.00	33.07	2.71
3119	3415	4.675510	CCTAACATGCTTTGGTGCTAATG	58.324	43.478	0.00	0.00	0.00	1.90
3120	3416	3.131046	GCCTAACATGCTTTGGTGCTAAT	59.869	43.478	0.00	0.00	0.00	1.73
3121	3417	2.491693	GCCTAACATGCTTTGGTGCTAA	59.508	45.455	0.00	0.00	0.00	3.09
3122	3418	2.091541	GCCTAACATGCTTTGGTGCTA	58.908	47.619	0.00	0.00	0.00	3.49
3123	3419	0.890683	GCCTAACATGCTTTGGTGCT	59.109	50.000	0.00	0.00	0.00	4.40
3124	3420	0.890683	AGCCTAACATGCTTTGGTGC	59.109	50.000	0.00	0.00	34.87	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.