Multiple sequence alignment - TraesCS2A01G064900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G064900 chr2A 100.000 2639 0 0 1 2639 29260927 29263565 0.000000e+00 4874.0
1 TraesCS2A01G064900 chr2A 88.889 45 5 0 369 413 86980414 86980458 3.670000e-04 56.5
2 TraesCS2A01G064900 chr2A 100.000 29 0 0 385 413 767620716 767620688 1.000000e-03 54.7
3 TraesCS2A01G064900 chr2B 86.989 1591 91 58 982 2520 42264160 42265686 0.000000e+00 1685.0
4 TraesCS2A01G064900 chr2B 89.271 494 26 7 407 891 42263313 42263788 6.290000e-166 593.0
5 TraesCS2A01G064900 chr2B 98.742 318 3 1 1 318 51676205 51676521 4.930000e-157 564.0
6 TraesCS2A01G064900 chr2B 93.220 177 12 0 407 583 42239054 42239230 7.250000e-66 261.0
7 TraesCS2A01G064900 chr2B 94.690 113 6 0 2507 2619 42265704 42265816 2.700000e-40 176.0
8 TraesCS2A01G064900 chr2D 86.819 1487 129 43 1188 2637 27062735 27064191 0.000000e+00 1598.0
9 TraesCS2A01G064900 chr2D 89.826 747 40 12 431 1171 27061962 27062678 0.000000e+00 926.0
10 TraesCS2A01G064900 chr2D 92.655 177 9 3 144 318 615989818 615989992 4.360000e-63 252.0
11 TraesCS2A01G064900 chr3B 99.373 319 2 0 1 319 56444391 56444073 1.760000e-161 579.0
12 TraesCS2A01G064900 chr7B 99.371 318 2 0 1 318 645424548 645424865 6.330000e-161 577.0
13 TraesCS2A01G064900 chr7B 98.438 320 3 1 1 318 684855056 684854737 1.770000e-156 562.0
14 TraesCS2A01G064900 chr7B 92.500 40 3 0 373 412 6240750 6240711 1.020000e-04 58.4
15 TraesCS2A01G064900 chr6B 99.371 318 2 0 1 318 167495253 167495570 6.330000e-161 577.0
16 TraesCS2A01G064900 chr6B 99.060 319 2 1 1 319 607002849 607003166 2.950000e-159 571.0
17 TraesCS2A01G064900 chr6B 84.365 307 42 3 1340 1640 38971505 38971811 1.990000e-76 296.0
18 TraesCS2A01G064900 chr7A 99.057 318 3 0 1 318 686670669 686670352 2.950000e-159 571.0
19 TraesCS2A01G064900 chr4B 99.060 319 2 1 2 319 570441765 570442083 2.950000e-159 571.0
20 TraesCS2A01G064900 chr3A 98.433 319 4 1 1 319 11934729 11935046 6.380000e-156 560.0
21 TraesCS2A01G064900 chr6D 84.691 307 41 3 1340 1640 24029443 24029749 4.270000e-78 302.0
22 TraesCS2A01G064900 chr6A 84.691 307 41 3 1340 1640 22555509 22555815 4.270000e-78 302.0
23 TraesCS2A01G064900 chr7D 91.892 185 12 3 149 332 62989537 62989355 3.370000e-64 255.0
24 TraesCS2A01G064900 chr1D 91.398 186 12 3 149 334 51612709 51612528 4.360000e-63 252.0
25 TraesCS2A01G064900 chr3D 91.351 185 12 2 149 330 520691083 520690900 1.570000e-62 250.0
26 TraesCS2A01G064900 chr4A 92.857 42 3 0 373 414 702644978 702644937 7.890000e-06 62.1
27 TraesCS2A01G064900 chr5A 92.500 40 3 0 373 412 690335127 690335166 1.020000e-04 58.4
28 TraesCS2A01G064900 chr5D 92.308 39 2 1 374 412 336780419 336780456 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G064900 chr2A 29260927 29263565 2638 False 4874 4874 100.000000 1 2639 1 chr2A.!!$F1 2638
1 TraesCS2A01G064900 chr2B 42263313 42265816 2503 False 818 1685 90.316667 407 2619 3 chr2B.!!$F3 2212
2 TraesCS2A01G064900 chr2D 27061962 27064191 2229 False 1262 1598 88.322500 431 2637 2 chr2D.!!$F2 2206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.031857 TTTTGTCGCGGTCCGTAAGA 59.968 50.0 13.94 7.6 43.02 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2421 0.247695 GACTTATCAGCGCCGTTTGC 60.248 55.0 2.29 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.582689 GGTTGGGAAGTTAGATGATTTGG 57.417 43.478 0.00 0.00 0.00 3.28
23 24 5.261216 GGTTGGGAAGTTAGATGATTTGGA 58.739 41.667 0.00 0.00 0.00 3.53
24 25 5.714806 GGTTGGGAAGTTAGATGATTTGGAA 59.285 40.000 0.00 0.00 0.00 3.53
25 26 6.381133 GGTTGGGAAGTTAGATGATTTGGAAT 59.619 38.462 0.00 0.00 0.00 3.01
26 27 7.260603 GTTGGGAAGTTAGATGATTTGGAATG 58.739 38.462 0.00 0.00 0.00 2.67
27 28 6.730447 TGGGAAGTTAGATGATTTGGAATGA 58.270 36.000 0.00 0.00 0.00 2.57
28 29 7.356680 TGGGAAGTTAGATGATTTGGAATGAT 58.643 34.615 0.00 0.00 0.00 2.45
29 30 7.286087 TGGGAAGTTAGATGATTTGGAATGATG 59.714 37.037 0.00 0.00 0.00 3.07
30 31 7.503566 GGGAAGTTAGATGATTTGGAATGATGA 59.496 37.037 0.00 0.00 0.00 2.92
31 32 8.566260 GGAAGTTAGATGATTTGGAATGATGAG 58.434 37.037 0.00 0.00 0.00 2.90
32 33 8.461249 AAGTTAGATGATTTGGAATGATGAGG 57.539 34.615 0.00 0.00 0.00 3.86
33 34 7.002879 AGTTAGATGATTTGGAATGATGAGGG 58.997 38.462 0.00 0.00 0.00 4.30
34 35 4.737578 AGATGATTTGGAATGATGAGGGG 58.262 43.478 0.00 0.00 0.00 4.79
35 36 4.169461 AGATGATTTGGAATGATGAGGGGT 59.831 41.667 0.00 0.00 0.00 4.95
36 37 3.634504 TGATTTGGAATGATGAGGGGTG 58.365 45.455 0.00 0.00 0.00 4.61
37 38 3.269118 TGATTTGGAATGATGAGGGGTGA 59.731 43.478 0.00 0.00 0.00 4.02
38 39 4.079038 TGATTTGGAATGATGAGGGGTGAT 60.079 41.667 0.00 0.00 0.00 3.06
39 40 5.134169 TGATTTGGAATGATGAGGGGTGATA 59.866 40.000 0.00 0.00 0.00 2.15
40 41 5.464588 TTTGGAATGATGAGGGGTGATAA 57.535 39.130 0.00 0.00 0.00 1.75
41 42 5.464588 TTGGAATGATGAGGGGTGATAAA 57.535 39.130 0.00 0.00 0.00 1.40
42 43 5.464588 TGGAATGATGAGGGGTGATAAAA 57.535 39.130 0.00 0.00 0.00 1.52
43 44 5.448654 TGGAATGATGAGGGGTGATAAAAG 58.551 41.667 0.00 0.00 0.00 2.27
44 45 5.193527 TGGAATGATGAGGGGTGATAAAAGA 59.806 40.000 0.00 0.00 0.00 2.52
45 46 6.129179 GGAATGATGAGGGGTGATAAAAGAA 58.871 40.000 0.00 0.00 0.00 2.52
46 47 6.779539 GGAATGATGAGGGGTGATAAAAGAAT 59.220 38.462 0.00 0.00 0.00 2.40
47 48 7.944554 GGAATGATGAGGGGTGATAAAAGAATA 59.055 37.037 0.00 0.00 0.00 1.75
48 49 9.354673 GAATGATGAGGGGTGATAAAAGAATAA 57.645 33.333 0.00 0.00 0.00 1.40
49 50 9.713684 AATGATGAGGGGTGATAAAAGAATAAA 57.286 29.630 0.00 0.00 0.00 1.40
50 51 9.887862 ATGATGAGGGGTGATAAAAGAATAAAT 57.112 29.630 0.00 0.00 0.00 1.40
51 52 9.713684 TGATGAGGGGTGATAAAAGAATAAATT 57.286 29.630 0.00 0.00 0.00 1.82
52 53 9.971922 GATGAGGGGTGATAAAAGAATAAATTG 57.028 33.333 0.00 0.00 0.00 2.32
53 54 9.713684 ATGAGGGGTGATAAAAGAATAAATTGA 57.286 29.630 0.00 0.00 0.00 2.57
54 55 9.189156 TGAGGGGTGATAAAAGAATAAATTGAG 57.811 33.333 0.00 0.00 0.00 3.02
55 56 9.408648 GAGGGGTGATAAAAGAATAAATTGAGA 57.591 33.333 0.00 0.00 0.00 3.27
56 57 9.768215 AGGGGTGATAAAAGAATAAATTGAGAA 57.232 29.630 0.00 0.00 0.00 2.87
66 67 8.517062 AAGAATAAATTGAGAAGTGATGAGGG 57.483 34.615 0.00 0.00 0.00 4.30
67 68 7.059156 AGAATAAATTGAGAAGTGATGAGGGG 58.941 38.462 0.00 0.00 0.00 4.79
68 69 4.664688 AAATTGAGAAGTGATGAGGGGT 57.335 40.909 0.00 0.00 0.00 4.95
69 70 3.641434 ATTGAGAAGTGATGAGGGGTG 57.359 47.619 0.00 0.00 0.00 4.61
70 71 1.279496 TGAGAAGTGATGAGGGGTGG 58.721 55.000 0.00 0.00 0.00 4.61
71 72 1.280457 GAGAAGTGATGAGGGGTGGT 58.720 55.000 0.00 0.00 0.00 4.16
72 73 0.987294 AGAAGTGATGAGGGGTGGTG 59.013 55.000 0.00 0.00 0.00 4.17
73 74 0.984230 GAAGTGATGAGGGGTGGTGA 59.016 55.000 0.00 0.00 0.00 4.02
74 75 1.561542 GAAGTGATGAGGGGTGGTGAT 59.438 52.381 0.00 0.00 0.00 3.06
75 76 1.673767 AGTGATGAGGGGTGGTGATT 58.326 50.000 0.00 0.00 0.00 2.57
76 77 2.845659 AGTGATGAGGGGTGGTGATTA 58.154 47.619 0.00 0.00 0.00 1.75
77 78 2.774234 AGTGATGAGGGGTGGTGATTAG 59.226 50.000 0.00 0.00 0.00 1.73
78 79 2.771943 GTGATGAGGGGTGGTGATTAGA 59.228 50.000 0.00 0.00 0.00 2.10
79 80 3.041211 TGATGAGGGGTGGTGATTAGAG 58.959 50.000 0.00 0.00 0.00 2.43
80 81 2.940514 TGAGGGGTGGTGATTAGAGA 57.059 50.000 0.00 0.00 0.00 3.10
81 82 2.467880 TGAGGGGTGGTGATTAGAGAC 58.532 52.381 0.00 0.00 0.00 3.36
82 83 2.044492 TGAGGGGTGGTGATTAGAGACT 59.956 50.000 0.00 0.00 0.00 3.24
83 84 3.271225 TGAGGGGTGGTGATTAGAGACTA 59.729 47.826 0.00 0.00 0.00 2.59
84 85 3.892588 GAGGGGTGGTGATTAGAGACTAG 59.107 52.174 0.00 0.00 0.00 2.57
85 86 3.532232 AGGGGTGGTGATTAGAGACTAGA 59.468 47.826 0.00 0.00 0.00 2.43
86 87 3.892588 GGGGTGGTGATTAGAGACTAGAG 59.107 52.174 0.00 0.00 0.00 2.43
87 88 3.892588 GGGTGGTGATTAGAGACTAGAGG 59.107 52.174 0.00 0.00 0.00 3.69
88 89 4.538738 GGTGGTGATTAGAGACTAGAGGT 58.461 47.826 0.00 0.00 0.00 3.85
89 90 4.957327 GGTGGTGATTAGAGACTAGAGGTT 59.043 45.833 0.00 0.00 0.00 3.50
90 91 6.127793 GGTGGTGATTAGAGACTAGAGGTTA 58.872 44.000 0.00 0.00 0.00 2.85
91 92 6.263617 GGTGGTGATTAGAGACTAGAGGTTAG 59.736 46.154 0.00 0.00 0.00 2.34
92 93 7.055378 GTGGTGATTAGAGACTAGAGGTTAGA 58.945 42.308 0.00 0.00 0.00 2.10
93 94 7.556996 GTGGTGATTAGAGACTAGAGGTTAGAA 59.443 40.741 0.00 0.00 0.00 2.10
94 95 8.282982 TGGTGATTAGAGACTAGAGGTTAGAAT 58.717 37.037 0.00 0.00 0.00 2.40
95 96 9.796180 GGTGATTAGAGACTAGAGGTTAGAATA 57.204 37.037 0.00 0.00 0.00 1.75
149 150 2.301577 TTTTCAAAAACCTGTGGCGG 57.698 45.000 0.00 0.00 0.00 6.13
150 151 0.179097 TTTCAAAAACCTGTGGCGGC 60.179 50.000 0.00 0.00 0.00 6.53
151 152 2.022240 TTCAAAAACCTGTGGCGGCC 62.022 55.000 13.32 13.32 0.00 6.13
152 153 2.123468 AAAAACCTGTGGCGGCCT 60.123 55.556 21.46 0.00 0.00 5.19
153 154 1.760480 AAAAACCTGTGGCGGCCTT 60.760 52.632 21.46 2.18 0.00 4.35
154 155 1.334384 AAAAACCTGTGGCGGCCTTT 61.334 50.000 21.46 8.97 0.00 3.11
155 156 0.468400 AAAACCTGTGGCGGCCTTTA 60.468 50.000 21.46 5.44 0.00 1.85
156 157 0.893727 AAACCTGTGGCGGCCTTTAG 60.894 55.000 21.46 14.55 0.00 1.85
157 158 2.064242 AACCTGTGGCGGCCTTTAGT 62.064 55.000 21.46 9.87 0.00 2.24
158 159 1.745489 CCTGTGGCGGCCTTTAGTC 60.745 63.158 21.46 4.52 0.00 2.59
159 160 2.047655 TGTGGCGGCCTTTAGTCG 60.048 61.111 21.46 0.00 0.00 4.18
164 165 2.433664 CGGCCTTTAGTCGCGGTT 60.434 61.111 6.13 0.00 0.00 4.44
165 166 1.153784 CGGCCTTTAGTCGCGGTTA 60.154 57.895 6.13 0.00 0.00 2.85
166 167 1.143969 CGGCCTTTAGTCGCGGTTAG 61.144 60.000 6.13 0.00 0.00 2.34
167 168 1.426816 GGCCTTTAGTCGCGGTTAGC 61.427 60.000 6.13 0.17 43.95 3.09
168 169 1.426816 GCCTTTAGTCGCGGTTAGCC 61.427 60.000 6.13 0.00 44.76 3.93
169 170 0.108520 CCTTTAGTCGCGGTTAGCCA 60.109 55.000 6.13 0.00 44.76 4.75
170 171 0.997196 CTTTAGTCGCGGTTAGCCAC 59.003 55.000 6.13 0.00 44.76 5.01
171 172 0.317799 TTTAGTCGCGGTTAGCCACA 59.682 50.000 6.13 0.00 44.76 4.17
172 173 0.317799 TTAGTCGCGGTTAGCCACAA 59.682 50.000 6.13 0.00 44.76 3.33
173 174 0.108992 TAGTCGCGGTTAGCCACAAG 60.109 55.000 6.13 0.00 44.76 3.16
174 175 1.373748 GTCGCGGTTAGCCACAAGA 60.374 57.895 6.13 0.00 44.76 3.02
175 176 0.947180 GTCGCGGTTAGCCACAAGAA 60.947 55.000 6.13 0.00 44.76 2.52
176 177 0.947180 TCGCGGTTAGCCACAAGAAC 60.947 55.000 6.13 0.00 44.76 3.01
177 178 1.873863 GCGGTTAGCCACAAGAACC 59.126 57.895 0.00 0.00 40.81 3.62
179 180 2.551644 GGTTAGCCACAAGAACCGG 58.448 57.895 0.00 0.00 33.75 5.28
180 181 0.958876 GGTTAGCCACAAGAACCGGG 60.959 60.000 6.32 0.00 33.75 5.73
181 182 0.035739 GTTAGCCACAAGAACCGGGA 59.964 55.000 6.32 0.00 0.00 5.14
182 183 0.035739 TTAGCCACAAGAACCGGGAC 59.964 55.000 6.32 0.00 0.00 4.46
183 184 0.834687 TAGCCACAAGAACCGGGACT 60.835 55.000 6.32 0.73 0.00 3.85
184 185 0.834687 AGCCACAAGAACCGGGACTA 60.835 55.000 6.32 0.00 0.00 2.59
185 186 0.035739 GCCACAAGAACCGGGACTAA 59.964 55.000 6.32 0.00 0.00 2.24
186 187 1.543871 GCCACAAGAACCGGGACTAAA 60.544 52.381 6.32 0.00 0.00 1.85
187 188 2.423577 CCACAAGAACCGGGACTAAAG 58.576 52.381 6.32 1.44 0.00 1.85
188 189 2.038033 CCACAAGAACCGGGACTAAAGA 59.962 50.000 6.32 0.00 0.00 2.52
189 190 3.064931 CACAAGAACCGGGACTAAAGAC 58.935 50.000 6.32 0.00 0.00 3.01
190 191 2.970640 ACAAGAACCGGGACTAAAGACT 59.029 45.455 6.32 0.00 0.00 3.24
191 192 3.390311 ACAAGAACCGGGACTAAAGACTT 59.610 43.478 6.32 0.00 0.00 3.01
192 193 4.141551 ACAAGAACCGGGACTAAAGACTTT 60.142 41.667 6.32 5.62 0.00 2.66
193 194 4.701651 AGAACCGGGACTAAAGACTTTT 57.298 40.909 6.32 0.00 0.00 2.27
194 195 4.386711 AGAACCGGGACTAAAGACTTTTG 58.613 43.478 6.32 6.80 0.00 2.44
195 196 3.851458 ACCGGGACTAAAGACTTTTGT 57.149 42.857 13.75 13.75 0.00 2.83
204 205 2.851104 GACTTTTGTCGCGGTCCG 59.149 61.111 6.99 6.99 39.89 4.79
205 206 1.952635 GACTTTTGTCGCGGTCCGT 60.953 57.895 13.94 0.00 39.89 4.69
206 207 0.664166 GACTTTTGTCGCGGTCCGTA 60.664 55.000 13.94 0.00 39.89 4.02
207 208 0.249405 ACTTTTGTCGCGGTCCGTAA 60.249 50.000 13.94 0.00 38.35 3.18
208 209 0.437295 CTTTTGTCGCGGTCCGTAAG 59.563 55.000 13.94 5.19 38.35 2.34
209 210 0.031857 TTTTGTCGCGGTCCGTAAGA 59.968 50.000 13.94 7.60 43.02 2.10
210 211 0.387622 TTTGTCGCGGTCCGTAAGAG 60.388 55.000 13.94 0.05 43.02 2.85
211 212 2.578981 GTCGCGGTCCGTAAGAGC 60.579 66.667 13.94 0.00 43.02 4.09
212 213 3.818787 TCGCGGTCCGTAAGAGCC 61.819 66.667 13.94 0.00 40.01 4.70
216 217 4.867599 GGTCCGTAAGAGCCGCGG 62.868 72.222 24.05 24.05 46.12 6.46
242 243 2.510918 GGGGGTCTTTAGTCGCGC 60.511 66.667 0.00 0.00 0.00 6.86
243 244 2.577593 GGGGTCTTTAGTCGCGCT 59.422 61.111 5.56 4.52 0.00 5.92
244 245 1.079336 GGGGTCTTTAGTCGCGCTT 60.079 57.895 5.56 0.00 0.00 4.68
245 246 0.174162 GGGGTCTTTAGTCGCGCTTA 59.826 55.000 5.56 0.00 0.00 3.09
246 247 1.202498 GGGGTCTTTAGTCGCGCTTAT 60.202 52.381 5.56 0.00 0.00 1.73
247 248 2.547826 GGGTCTTTAGTCGCGCTTATT 58.452 47.619 5.56 0.00 0.00 1.40
248 249 2.934553 GGGTCTTTAGTCGCGCTTATTT 59.065 45.455 5.56 0.00 0.00 1.40
249 250 4.114794 GGGTCTTTAGTCGCGCTTATTTA 58.885 43.478 5.56 0.00 0.00 1.40
250 251 4.208666 GGGTCTTTAGTCGCGCTTATTTAG 59.791 45.833 5.56 0.00 0.00 1.85
251 252 4.802563 GGTCTTTAGTCGCGCTTATTTAGT 59.197 41.667 5.56 0.00 0.00 2.24
252 253 5.051841 GGTCTTTAGTCGCGCTTATTTAGTC 60.052 44.000 5.56 0.00 0.00 2.59
253 254 5.039333 TCTTTAGTCGCGCTTATTTAGTCC 58.961 41.667 5.56 0.00 0.00 3.85
254 255 2.220479 AGTCGCGCTTATTTAGTCCC 57.780 50.000 5.56 0.00 0.00 4.46
255 256 0.850856 GTCGCGCTTATTTAGTCCCG 59.149 55.000 5.56 0.00 0.00 5.14
256 257 0.249155 TCGCGCTTATTTAGTCCCGG 60.249 55.000 5.56 0.00 0.00 5.73
257 258 0.529119 CGCGCTTATTTAGTCCCGGT 60.529 55.000 5.56 0.00 0.00 5.28
258 259 1.660167 GCGCTTATTTAGTCCCGGTT 58.340 50.000 0.00 0.00 0.00 4.44
259 260 1.329599 GCGCTTATTTAGTCCCGGTTG 59.670 52.381 0.00 0.00 0.00 3.77
260 261 1.329599 CGCTTATTTAGTCCCGGTTGC 59.670 52.381 0.00 0.00 0.00 4.17
261 262 2.361789 GCTTATTTAGTCCCGGTTGCA 58.638 47.619 0.00 0.00 0.00 4.08
262 263 2.096980 GCTTATTTAGTCCCGGTTGCAC 59.903 50.000 0.00 0.00 0.00 4.57
263 264 3.340034 CTTATTTAGTCCCGGTTGCACA 58.660 45.455 0.00 0.00 0.00 4.57
264 265 2.279935 ATTTAGTCCCGGTTGCACAA 57.720 45.000 0.00 0.00 0.00 3.33
265 266 1.310904 TTTAGTCCCGGTTGCACAAC 58.689 50.000 0.00 4.92 40.45 3.32
273 274 4.783667 GTTGCACAACCGGGACTA 57.216 55.556 6.32 0.00 35.36 2.59
274 275 3.009612 GTTGCACAACCGGGACTAA 57.990 52.632 6.32 0.00 35.36 2.24
275 276 1.310904 GTTGCACAACCGGGACTAAA 58.689 50.000 6.32 0.00 35.36 1.85
276 277 1.265905 GTTGCACAACCGGGACTAAAG 59.734 52.381 6.32 0.00 35.36 1.85
277 278 0.250553 TGCACAACCGGGACTAAAGG 60.251 55.000 6.32 0.00 0.00 3.11
278 279 1.583495 GCACAACCGGGACTAAAGGC 61.583 60.000 6.32 0.00 0.00 4.35
279 280 0.036306 CACAACCGGGACTAAAGGCT 59.964 55.000 6.32 0.00 0.00 4.58
280 281 0.036306 ACAACCGGGACTAAAGGCTG 59.964 55.000 6.32 0.00 0.00 4.85
281 282 0.036306 CAACCGGGACTAAAGGCTGT 59.964 55.000 6.32 0.00 0.00 4.40
282 283 0.769247 AACCGGGACTAAAGGCTGTT 59.231 50.000 6.32 0.00 0.00 3.16
283 284 0.036306 ACCGGGACTAAAGGCTGTTG 59.964 55.000 6.32 0.00 0.00 3.33
284 285 1.305930 CCGGGACTAAAGGCTGTTGC 61.306 60.000 0.00 0.00 38.76 4.17
285 286 1.635663 CGGGACTAAAGGCTGTTGCG 61.636 60.000 0.00 0.00 40.82 4.85
286 287 0.321298 GGGACTAAAGGCTGTTGCGA 60.321 55.000 0.00 0.00 40.82 5.10
287 288 1.519408 GGACTAAAGGCTGTTGCGAA 58.481 50.000 0.00 0.00 40.82 4.70
288 289 1.197036 GGACTAAAGGCTGTTGCGAAC 59.803 52.381 0.00 0.00 40.82 3.95
289 290 1.197036 GACTAAAGGCTGTTGCGAACC 59.803 52.381 0.00 0.00 40.82 3.62
290 291 0.165944 CTAAAGGCTGTTGCGAACCG 59.834 55.000 0.00 0.00 40.82 4.44
291 292 1.231958 TAAAGGCTGTTGCGAACCGG 61.232 55.000 0.00 0.00 40.82 5.28
294 295 3.723348 GCTGTTGCGAACCGGGAC 61.723 66.667 6.32 0.00 0.00 4.46
295 296 2.030562 CTGTTGCGAACCGGGACT 59.969 61.111 6.32 0.00 0.00 3.85
296 297 1.290955 CTGTTGCGAACCGGGACTA 59.709 57.895 6.32 0.00 0.00 2.59
297 298 0.320073 CTGTTGCGAACCGGGACTAA 60.320 55.000 6.32 0.00 0.00 2.24
298 299 0.106335 TGTTGCGAACCGGGACTAAA 59.894 50.000 6.32 0.00 0.00 1.85
299 300 0.794473 GTTGCGAACCGGGACTAAAG 59.206 55.000 6.32 0.00 0.00 1.85
300 301 0.320946 TTGCGAACCGGGACTAAAGG 60.321 55.000 6.32 0.00 0.00 3.11
301 302 1.449070 GCGAACCGGGACTAAAGGG 60.449 63.158 6.32 0.00 0.00 3.95
302 303 1.449070 CGAACCGGGACTAAAGGGC 60.449 63.158 6.32 0.00 0.00 5.19
303 304 1.896122 CGAACCGGGACTAAAGGGCT 61.896 60.000 6.32 0.00 0.00 5.19
304 305 0.327259 GAACCGGGACTAAAGGGCTT 59.673 55.000 6.32 0.00 0.00 4.35
305 306 0.775542 AACCGGGACTAAAGGGCTTT 59.224 50.000 6.32 0.00 36.63 3.51
306 307 0.775542 ACCGGGACTAAAGGGCTTTT 59.224 50.000 6.32 0.00 34.23 2.27
307 308 1.146359 ACCGGGACTAAAGGGCTTTTT 59.854 47.619 6.32 0.00 34.23 1.94
325 326 2.561478 TTTCTACCAGTGTTGAGGCC 57.439 50.000 0.00 0.00 0.00 5.19
326 327 0.320374 TTCTACCAGTGTTGAGGCCG 59.680 55.000 0.00 0.00 0.00 6.13
327 328 1.741770 CTACCAGTGTTGAGGCCGC 60.742 63.158 0.00 0.00 0.00 6.53
328 329 3.583276 TACCAGTGTTGAGGCCGCG 62.583 63.158 0.00 0.00 0.00 6.46
333 334 4.666397 TGTTGAGGCCGCGCGTTA 62.666 61.111 29.95 3.80 0.00 3.18
334 335 3.849953 GTTGAGGCCGCGCGTTAG 61.850 66.667 29.95 14.97 0.00 2.34
362 363 5.998553 CGATATTCGCTGTTCTACCTTAGA 58.001 41.667 0.00 0.00 31.14 2.10
363 364 6.613233 CGATATTCGCTGTTCTACCTTAGAT 58.387 40.000 0.00 0.00 31.22 1.98
364 365 6.524933 CGATATTCGCTGTTCTACCTTAGATG 59.475 42.308 0.00 0.00 31.22 2.90
365 366 5.854010 ATTCGCTGTTCTACCTTAGATGA 57.146 39.130 0.00 0.00 34.22 2.92
366 367 5.654603 TTCGCTGTTCTACCTTAGATGAA 57.345 39.130 0.00 0.00 34.22 2.57
367 368 5.250235 TCGCTGTTCTACCTTAGATGAAG 57.750 43.478 0.00 0.00 34.22 3.02
376 377 2.691409 CTTAGATGAAGGCACCCGAA 57.309 50.000 0.00 0.00 0.00 4.30
377 378 2.280628 CTTAGATGAAGGCACCCGAAC 58.719 52.381 0.00 0.00 0.00 3.95
378 379 1.271856 TAGATGAAGGCACCCGAACA 58.728 50.000 0.00 0.00 0.00 3.18
379 380 0.400213 AGATGAAGGCACCCGAACAA 59.600 50.000 0.00 0.00 0.00 2.83
380 381 0.804989 GATGAAGGCACCCGAACAAG 59.195 55.000 0.00 0.00 0.00 3.16
381 382 0.400213 ATGAAGGCACCCGAACAAGA 59.600 50.000 0.00 0.00 0.00 3.02
382 383 0.400213 TGAAGGCACCCGAACAAGAT 59.600 50.000 0.00 0.00 0.00 2.40
383 384 1.202879 TGAAGGCACCCGAACAAGATT 60.203 47.619 0.00 0.00 0.00 2.40
384 385 1.200020 GAAGGCACCCGAACAAGATTG 59.800 52.381 0.00 0.00 0.00 2.67
385 386 0.609131 AGGCACCCGAACAAGATTGG 60.609 55.000 0.00 0.00 0.00 3.16
389 390 2.466867 CCCGAACAAGATTGGGTCG 58.533 57.895 11.69 11.69 38.99 4.79
390 391 1.644786 CCCGAACAAGATTGGGTCGC 61.645 60.000 12.70 0.00 38.99 5.19
391 392 1.419922 CGAACAAGATTGGGTCGCG 59.580 57.895 0.00 0.00 34.62 5.87
392 393 1.134694 GAACAAGATTGGGTCGCGC 59.865 57.895 0.00 0.00 0.00 6.86
393 394 2.563086 GAACAAGATTGGGTCGCGCG 62.563 60.000 26.76 26.76 0.00 6.86
394 395 3.864686 CAAGATTGGGTCGCGCGG 61.865 66.667 31.69 11.75 0.00 6.46
395 396 4.388499 AAGATTGGGTCGCGCGGT 62.388 61.111 31.69 9.18 0.00 5.68
426 427 2.207924 ACTCCCGGAGTTTCTGCGT 61.208 57.895 14.84 0.00 43.50 5.24
428 429 2.030562 CCCGGAGTTTCTGCGTGT 59.969 61.111 0.73 0.00 43.50 4.49
429 430 1.597027 CCCGGAGTTTCTGCGTGTT 60.597 57.895 0.73 0.00 43.50 3.32
433 441 0.317854 GGAGTTTCTGCGTGTTTGGC 60.318 55.000 0.00 0.00 0.00 4.52
496 504 1.925185 GATCCAAAGCGACGGTTACTC 59.075 52.381 13.34 4.20 0.00 2.59
545 553 2.204461 TTTCCTCTCCACCGCACGA 61.204 57.895 0.00 0.00 0.00 4.35
697 721 4.624364 CCACTCGCCAGCCACACA 62.624 66.667 0.00 0.00 0.00 3.72
698 722 2.359107 CACTCGCCAGCCACACAT 60.359 61.111 0.00 0.00 0.00 3.21
699 723 2.359107 ACTCGCCAGCCACACATG 60.359 61.111 0.00 0.00 0.00 3.21
701 725 4.639906 TCGCCAGCCACACATGCA 62.640 61.111 0.00 0.00 0.00 3.96
703 727 4.409218 GCCAGCCACACATGCACG 62.409 66.667 0.00 0.00 0.00 5.34
706 730 3.663176 AGCCACACATGCACGCAC 61.663 61.111 0.00 0.00 0.00 5.34
708 732 2.956194 CCACACATGCACGCACAT 59.044 55.556 0.00 0.00 0.00 3.21
709 733 1.921045 GCCACACATGCACGCACATA 61.921 55.000 0.00 0.00 0.00 2.29
711 735 1.605500 CACACATGCACGCACATAAC 58.394 50.000 0.00 0.00 0.00 1.89
724 748 2.510613 CACATAACCCACCGTTTTCCT 58.489 47.619 0.00 0.00 35.79 3.36
736 760 2.076863 CGTTTTCCTACCAGCTTCCTG 58.923 52.381 0.00 0.00 38.85 3.86
839 863 1.300388 CCCCGGACGCCTATAAACG 60.300 63.158 0.73 0.00 0.00 3.60
848 872 1.529796 CCTATAAACGCAGCCCCCA 59.470 57.895 0.00 0.00 0.00 4.96
850 874 0.107410 CTATAAACGCAGCCCCCACA 60.107 55.000 0.00 0.00 0.00 4.17
955 982 3.389002 AGCTGAACAATTTCTTGGGCTTT 59.611 39.130 0.00 0.00 36.64 3.51
983 1317 4.235372 AGAGAGGTTGAAGAAGGAAGGAA 58.765 43.478 0.00 0.00 0.00 3.36
984 1318 4.285775 AGAGAGGTTGAAGAAGGAAGGAAG 59.714 45.833 0.00 0.00 0.00 3.46
985 1319 4.235372 AGAGGTTGAAGAAGGAAGGAAGA 58.765 43.478 0.00 0.00 0.00 2.87
986 1320 4.660771 AGAGGTTGAAGAAGGAAGGAAGAA 59.339 41.667 0.00 0.00 0.00 2.52
987 1321 4.979335 AGGTTGAAGAAGGAAGGAAGAAG 58.021 43.478 0.00 0.00 0.00 2.85
988 1322 4.075682 GGTTGAAGAAGGAAGGAAGAAGG 58.924 47.826 0.00 0.00 0.00 3.46
989 1323 4.202472 GGTTGAAGAAGGAAGGAAGAAGGA 60.202 45.833 0.00 0.00 0.00 3.36
990 1324 4.899352 TGAAGAAGGAAGGAAGAAGGAG 57.101 45.455 0.00 0.00 0.00 3.69
991 1325 3.584848 TGAAGAAGGAAGGAAGAAGGAGG 59.415 47.826 0.00 0.00 0.00 4.30
992 1326 3.569135 AGAAGGAAGGAAGAAGGAGGA 57.431 47.619 0.00 0.00 0.00 3.71
1064 1398 2.032634 GTCGGCGGCACATGAAGAA 61.033 57.895 6.63 0.00 0.00 2.52
1101 1435 1.153349 GGTGGAGATGAAGGTCCGC 60.153 63.158 0.00 0.00 41.83 5.54
1143 1477 0.540597 GCAAGGTCAAGAAGGCCCTT 60.541 55.000 0.00 0.00 45.84 3.95
1162 1496 3.556213 CCTTGACGACATGAAAGGTACCA 60.556 47.826 15.94 0.00 35.47 3.25
1166 1500 2.201732 CGACATGAAAGGTACCATCCG 58.798 52.381 15.94 8.40 0.00 4.18
1185 1519 2.438614 GCTTTCTCCTTCCGGCCC 60.439 66.667 0.00 0.00 0.00 5.80
1201 1577 1.456287 CCCAATCCGATTCCTCCCC 59.544 63.158 0.00 0.00 0.00 4.81
1220 1596 3.535561 CCCTATCTCGCACATGTTTCTT 58.464 45.455 0.00 0.00 0.00 2.52
1221 1597 3.941483 CCCTATCTCGCACATGTTTCTTT 59.059 43.478 0.00 0.00 0.00 2.52
1228 1604 5.181811 TCTCGCACATGTTTCTTTCATTGAT 59.818 36.000 0.00 0.00 0.00 2.57
1244 1620 7.894376 TTCATTGATGGAAAGAAAATCTTGC 57.106 32.000 0.00 0.00 36.71 4.01
1251 1627 5.459536 GGAAAGAAAATCTTGCCTCAACT 57.540 39.130 9.50 0.00 46.71 3.16
1252 1628 5.847304 GGAAAGAAAATCTTGCCTCAACTT 58.153 37.500 9.50 0.00 46.71 2.66
1253 1629 6.283694 GGAAAGAAAATCTTGCCTCAACTTT 58.716 36.000 9.50 0.00 46.71 2.66
1255 1631 5.205759 AGAAAATCTTGCCTCAACTTTGG 57.794 39.130 0.00 0.00 0.00 3.28
1257 1633 4.326504 AAATCTTGCCTCAACTTTGGTG 57.673 40.909 0.00 0.00 0.00 4.17
1258 1634 2.727123 TCTTGCCTCAACTTTGGTGA 57.273 45.000 0.00 0.00 0.00 4.02
1322 1702 6.317789 AGTGTATCTGTTTGATTGTGGTTG 57.682 37.500 0.00 0.00 36.65 3.77
1650 2030 6.365789 GCTCCGTCATGTAGTAGTAGTAGTAG 59.634 46.154 0.00 0.00 0.00 2.57
1693 2088 1.084370 CCGGCGACCTTTTCTAGCTG 61.084 60.000 9.30 0.00 0.00 4.24
1695 2090 0.391793 GGCGACCTTTTCTAGCTGCT 60.392 55.000 7.57 7.57 0.00 4.24
1702 2097 2.278854 CTTTTCTAGCTGCTCTGCTCC 58.721 52.381 4.91 0.00 42.97 4.70
1703 2098 1.566211 TTTCTAGCTGCTCTGCTCCT 58.434 50.000 4.91 0.00 42.97 3.69
1705 2100 0.754957 TCTAGCTGCTCTGCTCCTCC 60.755 60.000 4.91 0.00 42.97 4.30
1706 2101 1.000866 TAGCTGCTCTGCTCCTCCA 59.999 57.895 4.91 0.00 42.97 3.86
1709 2104 1.146485 CTGCTCTGCTCCTCCATGG 59.854 63.158 4.97 4.97 37.10 3.66
1710 2105 2.203181 GCTCTGCTCCTCCATGGC 60.203 66.667 6.96 0.00 35.26 4.40
1711 2106 2.108566 CTCTGCTCCTCCATGGCG 59.891 66.667 6.96 0.00 35.26 5.69
1712 2107 2.685017 TCTGCTCCTCCATGGCGT 60.685 61.111 6.96 0.00 35.26 5.68
1722 2132 1.145156 CCATGGCGTCGTTGGGATA 59.855 57.895 0.00 0.00 0.00 2.59
1730 2140 3.693085 GGCGTCGTTGGGATATCTAGATA 59.307 47.826 14.76 14.76 0.00 1.98
1756 2166 6.759827 GTCTCTGTTGGTGTTTTCTTGTACTA 59.240 38.462 0.00 0.00 0.00 1.82
1757 2167 7.441458 GTCTCTGTTGGTGTTTTCTTGTACTAT 59.559 37.037 0.00 0.00 0.00 2.12
1797 2207 6.590068 AGAAGATGAAGATGGGTCTGTATTG 58.410 40.000 0.00 0.00 34.13 1.90
1867 2282 6.587206 TCCATCAATCTTGTTGTTTATGCA 57.413 33.333 0.00 0.00 0.00 3.96
1876 2293 6.804677 TCTTGTTGTTTATGCACAATGTTCT 58.195 32.000 0.00 0.00 38.89 3.01
1887 2308 4.157105 TGCACAATGTTCTCAATCAGATGG 59.843 41.667 0.00 0.00 0.00 3.51
1892 2313 1.936547 GTTCTCAATCAGATGGGCGTC 59.063 52.381 0.00 0.00 0.00 5.19
1909 2330 2.031560 GCGTCGCATGATTGATTTGGTA 59.968 45.455 13.44 0.00 0.00 3.25
1910 2331 3.846023 GCGTCGCATGATTGATTTGGTAG 60.846 47.826 13.44 0.00 0.00 3.18
1911 2332 3.309682 CGTCGCATGATTGATTTGGTAGT 59.690 43.478 0.00 0.00 0.00 2.73
1920 2341 8.733458 CATGATTGATTTGGTAGTCTTCTGAAA 58.267 33.333 0.00 0.00 0.00 2.69
1954 2380 4.590647 TCTGGTGAATGAAAGAGACTCTGT 59.409 41.667 5.55 0.00 0.00 3.41
1971 2397 8.354711 AGACTCTGTACTAGTCAATCAATCAA 57.645 34.615 22.69 0.00 44.77 2.57
1974 2400 6.935167 TCTGTACTAGTCAATCAATCAAGCA 58.065 36.000 0.00 0.00 0.00 3.91
1994 2420 1.571460 GAGCGTGCTGTTCCTGTTG 59.429 57.895 0.00 0.00 0.00 3.33
1995 2421 1.845809 GAGCGTGCTGTTCCTGTTGG 61.846 60.000 0.00 0.00 0.00 3.77
1996 2422 2.639286 CGTGCTGTTCCTGTTGGC 59.361 61.111 0.00 0.00 0.00 4.52
1997 2423 2.186160 CGTGCTGTTCCTGTTGGCA 61.186 57.895 0.00 0.00 0.00 4.92
2085 2517 4.714632 TCTTACTGTTCTGAAACTTGGGG 58.285 43.478 0.00 0.00 36.30 4.96
2121 2553 2.050350 CCAAGCACATCAGGCCAGG 61.050 63.158 5.01 0.00 0.00 4.45
2147 2579 1.250328 CCAAACTGAGATTGGCAGCA 58.750 50.000 8.61 0.00 40.78 4.41
2158 2590 2.512485 TTGGCAGCATGTTGTTCTTG 57.488 45.000 11.44 0.00 39.31 3.02
2175 2607 1.268992 TTGGACCATACCCCACTCGG 61.269 60.000 0.00 0.00 31.11 4.63
2202 2634 3.058432 CAGTTTCTTGTGCATCACTCTGG 60.058 47.826 0.00 0.00 35.11 3.86
2211 2643 1.000993 ATCACTCTGGCTCCGTCCT 59.999 57.895 0.00 0.00 0.00 3.85
2214 2646 0.681564 CACTCTGGCTCCGTCCTACT 60.682 60.000 0.00 0.00 0.00 2.57
2215 2647 0.394625 ACTCTGGCTCCGTCCTACTC 60.395 60.000 0.00 0.00 0.00 2.59
2220 2652 1.005097 TGGCTCCGTCCTACTCTACAA 59.995 52.381 0.00 0.00 0.00 2.41
2221 2653 2.308690 GGCTCCGTCCTACTCTACAAT 58.691 52.381 0.00 0.00 0.00 2.71
2239 2671 0.604243 ATACAAGCCGCGGTGACAAA 60.604 50.000 28.70 8.89 0.00 2.83
2250 2682 2.872038 GCGGTGACAAATCTCCTTGACT 60.872 50.000 0.00 0.00 36.50 3.41
2251 2683 2.738846 CGGTGACAAATCTCCTTGACTG 59.261 50.000 0.00 0.00 36.50 3.51
2253 2685 3.244561 GGTGACAAATCTCCTTGACTGGA 60.245 47.826 0.00 0.00 35.87 3.86
2388 2830 7.593825 AGTGAAGCAAAAATATAAGACACCAC 58.406 34.615 0.00 0.00 0.00 4.16
2390 2832 7.326063 GTGAAGCAAAAATATAAGACACCACAC 59.674 37.037 0.00 0.00 0.00 3.82
2391 2833 6.267496 AGCAAAAATATAAGACACCACACC 57.733 37.500 0.00 0.00 0.00 4.16
2401 2843 4.657814 AGACACCACACCCAGATAAAAT 57.342 40.909 0.00 0.00 0.00 1.82
2404 2846 3.075283 ACACCACACCCAGATAAAATGGA 59.925 43.478 0.00 0.00 40.51 3.41
2414 2856 3.865745 CAGATAAAATGGAGCTCGTCGTT 59.134 43.478 7.83 0.00 0.00 3.85
2415 2857 5.041287 CAGATAAAATGGAGCTCGTCGTTA 58.959 41.667 7.83 4.48 0.00 3.18
2418 2860 6.761714 AGATAAAATGGAGCTCGTCGTTATTT 59.238 34.615 7.83 5.03 0.00 1.40
2499 2941 3.368843 GGCACTGATTAAGACTCAGCTCA 60.369 47.826 4.77 0.00 43.18 4.26
2503 2945 4.142491 ACTGATTAAGACTCAGCTCAGTCG 60.142 45.833 12.46 0.00 46.52 4.18
2550 3023 5.591099 ACGCAATTGAGTTGTCAAAAAGAT 58.409 33.333 10.34 0.00 45.88 2.40
2606 3080 2.098607 TGAGTCGGTGTTATCTTAGCCG 59.901 50.000 0.00 0.00 43.32 5.52
2627 3101 3.000925 CGAAAGTTAATTCCGGGACATCG 59.999 47.826 0.00 4.54 0.00 3.84
2637 3111 2.858745 CCGGGACATCGGGAAATTTAT 58.141 47.619 0.00 0.00 45.78 1.40
2638 3112 3.219281 CCGGGACATCGGGAAATTTATT 58.781 45.455 0.00 0.00 45.78 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.261216 TCCAAATCATCTAACTTCCCAACC 58.739 41.667 0.00 0.00 0.00 3.77
1 2 6.834168 TTCCAAATCATCTAACTTCCCAAC 57.166 37.500 0.00 0.00 0.00 3.77
2 3 7.181361 TCATTCCAAATCATCTAACTTCCCAA 58.819 34.615 0.00 0.00 0.00 4.12
3 4 6.730447 TCATTCCAAATCATCTAACTTCCCA 58.270 36.000 0.00 0.00 0.00 4.37
4 5 7.503566 TCATCATTCCAAATCATCTAACTTCCC 59.496 37.037 0.00 0.00 0.00 3.97
5 6 8.455903 TCATCATTCCAAATCATCTAACTTCC 57.544 34.615 0.00 0.00 0.00 3.46
6 7 8.566260 CCTCATCATTCCAAATCATCTAACTTC 58.434 37.037 0.00 0.00 0.00 3.01
7 8 7.504911 CCCTCATCATTCCAAATCATCTAACTT 59.495 37.037 0.00 0.00 0.00 2.66
8 9 7.002879 CCCTCATCATTCCAAATCATCTAACT 58.997 38.462 0.00 0.00 0.00 2.24
9 10 6.208204 CCCCTCATCATTCCAAATCATCTAAC 59.792 42.308 0.00 0.00 0.00 2.34
10 11 6.126097 ACCCCTCATCATTCCAAATCATCTAA 60.126 38.462 0.00 0.00 0.00 2.10
11 12 5.373555 ACCCCTCATCATTCCAAATCATCTA 59.626 40.000 0.00 0.00 0.00 1.98
12 13 4.169461 ACCCCTCATCATTCCAAATCATCT 59.831 41.667 0.00 0.00 0.00 2.90
13 14 4.280174 CACCCCTCATCATTCCAAATCATC 59.720 45.833 0.00 0.00 0.00 2.92
14 15 4.079038 TCACCCCTCATCATTCCAAATCAT 60.079 41.667 0.00 0.00 0.00 2.45
15 16 3.269118 TCACCCCTCATCATTCCAAATCA 59.731 43.478 0.00 0.00 0.00 2.57
16 17 3.902218 TCACCCCTCATCATTCCAAATC 58.098 45.455 0.00 0.00 0.00 2.17
17 18 4.547886 ATCACCCCTCATCATTCCAAAT 57.452 40.909 0.00 0.00 0.00 2.32
18 19 5.464588 TTATCACCCCTCATCATTCCAAA 57.535 39.130 0.00 0.00 0.00 3.28
19 20 5.464588 TTTATCACCCCTCATCATTCCAA 57.535 39.130 0.00 0.00 0.00 3.53
20 21 5.193527 TCTTTTATCACCCCTCATCATTCCA 59.806 40.000 0.00 0.00 0.00 3.53
21 22 5.694995 TCTTTTATCACCCCTCATCATTCC 58.305 41.667 0.00 0.00 0.00 3.01
22 23 7.830099 ATTCTTTTATCACCCCTCATCATTC 57.170 36.000 0.00 0.00 0.00 2.67
23 24 9.713684 TTTATTCTTTTATCACCCCTCATCATT 57.286 29.630 0.00 0.00 0.00 2.57
24 25 9.887862 ATTTATTCTTTTATCACCCCTCATCAT 57.112 29.630 0.00 0.00 0.00 2.45
25 26 9.713684 AATTTATTCTTTTATCACCCCTCATCA 57.286 29.630 0.00 0.00 0.00 3.07
26 27 9.971922 CAATTTATTCTTTTATCACCCCTCATC 57.028 33.333 0.00 0.00 0.00 2.92
27 28 9.713684 TCAATTTATTCTTTTATCACCCCTCAT 57.286 29.630 0.00 0.00 0.00 2.90
28 29 9.189156 CTCAATTTATTCTTTTATCACCCCTCA 57.811 33.333 0.00 0.00 0.00 3.86
29 30 9.408648 TCTCAATTTATTCTTTTATCACCCCTC 57.591 33.333 0.00 0.00 0.00 4.30
30 31 9.768215 TTCTCAATTTATTCTTTTATCACCCCT 57.232 29.630 0.00 0.00 0.00 4.79
40 41 8.964772 CCCTCATCACTTCTCAATTTATTCTTT 58.035 33.333 0.00 0.00 0.00 2.52
41 42 7.559170 CCCCTCATCACTTCTCAATTTATTCTT 59.441 37.037 0.00 0.00 0.00 2.52
42 43 7.059156 CCCCTCATCACTTCTCAATTTATTCT 58.941 38.462 0.00 0.00 0.00 2.40
43 44 6.830838 ACCCCTCATCACTTCTCAATTTATTC 59.169 38.462 0.00 0.00 0.00 1.75
44 45 6.604795 CACCCCTCATCACTTCTCAATTTATT 59.395 38.462 0.00 0.00 0.00 1.40
45 46 6.125029 CACCCCTCATCACTTCTCAATTTAT 58.875 40.000 0.00 0.00 0.00 1.40
46 47 5.500234 CACCCCTCATCACTTCTCAATTTA 58.500 41.667 0.00 0.00 0.00 1.40
47 48 4.338879 CACCCCTCATCACTTCTCAATTT 58.661 43.478 0.00 0.00 0.00 1.82
48 49 3.308688 CCACCCCTCATCACTTCTCAATT 60.309 47.826 0.00 0.00 0.00 2.32
49 50 2.240667 CCACCCCTCATCACTTCTCAAT 59.759 50.000 0.00 0.00 0.00 2.57
50 51 1.630369 CCACCCCTCATCACTTCTCAA 59.370 52.381 0.00 0.00 0.00 3.02
51 52 1.279496 CCACCCCTCATCACTTCTCA 58.721 55.000 0.00 0.00 0.00 3.27
52 53 1.065854 CACCACCCCTCATCACTTCTC 60.066 57.143 0.00 0.00 0.00 2.87
53 54 0.987294 CACCACCCCTCATCACTTCT 59.013 55.000 0.00 0.00 0.00 2.85
54 55 0.984230 TCACCACCCCTCATCACTTC 59.016 55.000 0.00 0.00 0.00 3.01
55 56 1.673767 ATCACCACCCCTCATCACTT 58.326 50.000 0.00 0.00 0.00 3.16
56 57 1.673767 AATCACCACCCCTCATCACT 58.326 50.000 0.00 0.00 0.00 3.41
57 58 2.771943 TCTAATCACCACCCCTCATCAC 59.228 50.000 0.00 0.00 0.00 3.06
58 59 3.041211 CTCTAATCACCACCCCTCATCA 58.959 50.000 0.00 0.00 0.00 3.07
59 60 3.070302 GTCTCTAATCACCACCCCTCATC 59.930 52.174 0.00 0.00 0.00 2.92
60 61 3.041946 GTCTCTAATCACCACCCCTCAT 58.958 50.000 0.00 0.00 0.00 2.90
61 62 2.044492 AGTCTCTAATCACCACCCCTCA 59.956 50.000 0.00 0.00 0.00 3.86
62 63 2.753247 AGTCTCTAATCACCACCCCTC 58.247 52.381 0.00 0.00 0.00 4.30
63 64 2.950990 AGTCTCTAATCACCACCCCT 57.049 50.000 0.00 0.00 0.00 4.79
64 65 3.892588 CTCTAGTCTCTAATCACCACCCC 59.107 52.174 0.00 0.00 0.00 4.95
65 66 3.892588 CCTCTAGTCTCTAATCACCACCC 59.107 52.174 0.00 0.00 0.00 4.61
66 67 4.538738 ACCTCTAGTCTCTAATCACCACC 58.461 47.826 0.00 0.00 0.00 4.61
67 68 7.055378 TCTAACCTCTAGTCTCTAATCACCAC 58.945 42.308 0.00 0.00 0.00 4.16
68 69 7.209340 TCTAACCTCTAGTCTCTAATCACCA 57.791 40.000 0.00 0.00 0.00 4.17
69 70 8.700439 ATTCTAACCTCTAGTCTCTAATCACC 57.300 38.462 0.00 0.00 0.00 4.02
129 130 2.622436 CCGCCACAGGTTTTTGAAAAA 58.378 42.857 0.00 0.00 0.00 1.94
130 131 1.740718 GCCGCCACAGGTTTTTGAAAA 60.741 47.619 0.00 0.00 0.00 2.29
131 132 0.179097 GCCGCCACAGGTTTTTGAAA 60.179 50.000 0.00 0.00 0.00 2.69
132 133 1.439644 GCCGCCACAGGTTTTTGAA 59.560 52.632 0.00 0.00 0.00 2.69
133 134 2.494530 GGCCGCCACAGGTTTTTGA 61.495 57.895 3.91 0.00 0.00 2.69
134 135 2.026945 AAGGCCGCCACAGGTTTTTG 62.027 55.000 13.15 0.00 0.00 2.44
135 136 1.334384 AAAGGCCGCCACAGGTTTTT 61.334 50.000 13.15 0.00 0.00 1.94
136 137 0.468400 TAAAGGCCGCCACAGGTTTT 60.468 50.000 13.15 4.76 0.00 2.43
137 138 0.893727 CTAAAGGCCGCCACAGGTTT 60.894 55.000 13.15 5.51 0.00 3.27
138 139 1.303317 CTAAAGGCCGCCACAGGTT 60.303 57.895 13.15 0.00 0.00 3.50
139 140 2.351276 CTAAAGGCCGCCACAGGT 59.649 61.111 13.15 0.00 0.00 4.00
140 141 1.745489 GACTAAAGGCCGCCACAGG 60.745 63.158 13.15 1.58 0.00 4.00
141 142 2.100631 CGACTAAAGGCCGCCACAG 61.101 63.158 13.15 7.74 0.00 3.66
142 143 2.047655 CGACTAAAGGCCGCCACA 60.048 61.111 13.15 0.00 0.00 4.17
143 144 3.497031 GCGACTAAAGGCCGCCAC 61.497 66.667 13.15 0.00 42.77 5.01
147 148 1.143969 CTAACCGCGACTAAAGGCCG 61.144 60.000 8.23 0.00 0.00 6.13
148 149 1.426816 GCTAACCGCGACTAAAGGCC 61.427 60.000 8.23 0.00 0.00 5.19
149 150 1.426816 GGCTAACCGCGACTAAAGGC 61.427 60.000 8.23 6.19 40.44 4.35
150 151 0.108520 TGGCTAACCGCGACTAAAGG 60.109 55.000 8.23 0.00 40.44 3.11
151 152 0.997196 GTGGCTAACCGCGACTAAAG 59.003 55.000 8.23 0.00 43.17 1.85
152 153 3.126729 GTGGCTAACCGCGACTAAA 57.873 52.632 8.23 0.00 43.17 1.85
153 154 4.895854 GTGGCTAACCGCGACTAA 57.104 55.556 8.23 0.00 43.17 2.24
161 162 0.958876 CCCGGTTCTTGTGGCTAACC 60.959 60.000 0.00 0.00 39.44 2.85
162 163 0.035739 TCCCGGTTCTTGTGGCTAAC 59.964 55.000 0.00 0.00 0.00 2.34
163 164 0.035739 GTCCCGGTTCTTGTGGCTAA 59.964 55.000 0.00 0.00 0.00 3.09
164 165 0.834687 AGTCCCGGTTCTTGTGGCTA 60.835 55.000 0.00 0.00 0.00 3.93
165 166 0.834687 TAGTCCCGGTTCTTGTGGCT 60.835 55.000 0.00 0.00 0.00 4.75
166 167 0.035739 TTAGTCCCGGTTCTTGTGGC 59.964 55.000 0.00 0.00 0.00 5.01
167 168 2.038033 TCTTTAGTCCCGGTTCTTGTGG 59.962 50.000 0.00 0.00 0.00 4.17
168 169 3.064931 GTCTTTAGTCCCGGTTCTTGTG 58.935 50.000 0.00 0.00 0.00 3.33
169 170 2.970640 AGTCTTTAGTCCCGGTTCTTGT 59.029 45.455 0.00 0.00 0.00 3.16
170 171 3.679824 AGTCTTTAGTCCCGGTTCTTG 57.320 47.619 0.00 0.00 0.00 3.02
171 172 4.701651 AAAGTCTTTAGTCCCGGTTCTT 57.298 40.909 0.00 0.00 0.00 2.52
172 173 4.141551 ACAAAAGTCTTTAGTCCCGGTTCT 60.142 41.667 0.00 0.15 0.00 3.01
173 174 4.132336 ACAAAAGTCTTTAGTCCCGGTTC 58.868 43.478 0.00 0.00 0.00 3.62
174 175 4.132336 GACAAAAGTCTTTAGTCCCGGTT 58.868 43.478 0.00 0.00 0.00 4.44
175 176 3.736720 GACAAAAGTCTTTAGTCCCGGT 58.263 45.455 0.00 0.00 0.00 5.28
176 177 2.735134 CGACAAAAGTCTTTAGTCCCGG 59.265 50.000 0.00 0.00 0.00 5.73
177 178 2.157085 GCGACAAAAGTCTTTAGTCCCG 59.843 50.000 0.00 0.65 0.00 5.14
178 179 2.157085 CGCGACAAAAGTCTTTAGTCCC 59.843 50.000 0.00 0.00 0.00 4.46
179 180 2.157085 CCGCGACAAAAGTCTTTAGTCC 59.843 50.000 8.23 0.00 0.00 3.85
180 181 2.798847 ACCGCGACAAAAGTCTTTAGTC 59.201 45.455 8.23 0.00 0.00 2.59
181 182 2.798847 GACCGCGACAAAAGTCTTTAGT 59.201 45.455 8.23 0.00 0.00 2.24
182 183 2.157085 GGACCGCGACAAAAGTCTTTAG 59.843 50.000 8.23 0.00 0.00 1.85
183 184 2.137523 GGACCGCGACAAAAGTCTTTA 58.862 47.619 8.23 0.00 0.00 1.85
184 185 0.942252 GGACCGCGACAAAAGTCTTT 59.058 50.000 8.23 0.00 0.00 2.52
185 186 1.219522 CGGACCGCGACAAAAGTCTT 61.220 55.000 8.23 0.00 0.00 3.01
186 187 1.663702 CGGACCGCGACAAAAGTCT 60.664 57.895 8.23 0.00 0.00 3.24
187 188 0.664166 TACGGACCGCGACAAAAGTC 60.664 55.000 15.39 4.82 0.00 3.01
188 189 0.249405 TTACGGACCGCGACAAAAGT 60.249 50.000 15.39 2.17 0.00 2.66
189 190 0.437295 CTTACGGACCGCGACAAAAG 59.563 55.000 15.39 4.70 0.00 2.27
190 191 0.031857 TCTTACGGACCGCGACAAAA 59.968 50.000 15.39 0.00 0.00 2.44
191 192 0.387622 CTCTTACGGACCGCGACAAA 60.388 55.000 15.39 0.00 0.00 2.83
192 193 1.210931 CTCTTACGGACCGCGACAA 59.789 57.895 15.39 2.20 0.00 3.18
193 194 2.872557 CTCTTACGGACCGCGACA 59.127 61.111 15.39 0.00 0.00 4.35
194 195 2.578981 GCTCTTACGGACCGCGAC 60.579 66.667 15.39 0.17 0.00 5.19
195 196 3.818787 GGCTCTTACGGACCGCGA 61.819 66.667 15.39 7.37 0.00 5.87
225 226 2.510918 GCGCGACTAAAGACCCCC 60.511 66.667 12.10 0.00 0.00 5.40
226 227 0.174162 TAAGCGCGACTAAAGACCCC 59.826 55.000 12.10 0.00 0.00 4.95
227 228 2.220479 ATAAGCGCGACTAAAGACCC 57.780 50.000 12.10 0.00 0.00 4.46
228 229 4.802563 ACTAAATAAGCGCGACTAAAGACC 59.197 41.667 12.10 0.00 0.00 3.85
229 230 5.051841 GGACTAAATAAGCGCGACTAAAGAC 60.052 44.000 12.10 0.00 0.00 3.01
230 231 5.039333 GGACTAAATAAGCGCGACTAAAGA 58.961 41.667 12.10 0.00 0.00 2.52
231 232 4.208666 GGGACTAAATAAGCGCGACTAAAG 59.791 45.833 12.10 0.00 0.00 1.85
232 233 4.114794 GGGACTAAATAAGCGCGACTAAA 58.885 43.478 12.10 0.00 0.00 1.85
233 234 3.709987 GGGACTAAATAAGCGCGACTAA 58.290 45.455 12.10 0.00 0.00 2.24
234 235 2.287188 CGGGACTAAATAAGCGCGACTA 60.287 50.000 12.10 0.00 38.79 2.59
235 236 1.535437 CGGGACTAAATAAGCGCGACT 60.535 52.381 12.10 3.13 38.79 4.18
236 237 0.850856 CGGGACTAAATAAGCGCGAC 59.149 55.000 12.10 0.04 38.79 5.19
237 238 0.249155 CCGGGACTAAATAAGCGCGA 60.249 55.000 12.10 0.00 38.79 5.87
238 239 0.529119 ACCGGGACTAAATAAGCGCG 60.529 55.000 6.32 0.00 37.39 6.86
239 240 1.329599 CAACCGGGACTAAATAAGCGC 59.670 52.381 6.32 0.00 0.00 5.92
240 241 1.329599 GCAACCGGGACTAAATAAGCG 59.670 52.381 6.32 0.00 0.00 4.68
241 242 2.096980 GTGCAACCGGGACTAAATAAGC 59.903 50.000 6.32 0.00 34.56 3.09
242 243 3.340034 TGTGCAACCGGGACTAAATAAG 58.660 45.455 6.32 0.00 38.87 1.73
243 244 3.420300 TGTGCAACCGGGACTAAATAA 57.580 42.857 6.32 0.00 38.87 1.40
244 245 3.075884 GTTGTGCAACCGGGACTAAATA 58.924 45.455 6.32 0.00 38.87 1.40
245 246 1.883926 GTTGTGCAACCGGGACTAAAT 59.116 47.619 6.32 0.00 38.87 1.40
246 247 1.310904 GTTGTGCAACCGGGACTAAA 58.689 50.000 6.32 0.00 38.87 1.85
247 248 3.009612 GTTGTGCAACCGGGACTAA 57.990 52.632 6.32 0.00 38.87 2.24
248 249 4.783667 GTTGTGCAACCGGGACTA 57.216 55.556 6.32 0.00 38.87 2.59
256 257 1.265905 CTTTAGTCCCGGTTGTGCAAC 59.734 52.381 0.00 6.52 40.45 4.17
257 258 1.600023 CTTTAGTCCCGGTTGTGCAA 58.400 50.000 0.00 0.00 0.00 4.08
258 259 0.250553 CCTTTAGTCCCGGTTGTGCA 60.251 55.000 0.00 0.00 0.00 4.57
259 260 1.583495 GCCTTTAGTCCCGGTTGTGC 61.583 60.000 0.00 0.00 0.00 4.57
260 261 0.036306 AGCCTTTAGTCCCGGTTGTG 59.964 55.000 0.00 0.00 0.00 3.33
261 262 0.036306 CAGCCTTTAGTCCCGGTTGT 59.964 55.000 0.00 0.00 0.00 3.32
262 263 0.036306 ACAGCCTTTAGTCCCGGTTG 59.964 55.000 0.00 0.00 35.47 3.77
263 264 0.769247 AACAGCCTTTAGTCCCGGTT 59.231 50.000 0.00 0.00 0.00 4.44
264 265 0.036306 CAACAGCCTTTAGTCCCGGT 59.964 55.000 0.00 0.00 0.00 5.28
265 266 1.305930 GCAACAGCCTTTAGTCCCGG 61.306 60.000 0.00 0.00 0.00 5.73
266 267 1.635663 CGCAACAGCCTTTAGTCCCG 61.636 60.000 0.00 0.00 0.00 5.14
267 268 0.321298 TCGCAACAGCCTTTAGTCCC 60.321 55.000 0.00 0.00 0.00 4.46
268 269 1.197036 GTTCGCAACAGCCTTTAGTCC 59.803 52.381 0.00 0.00 0.00 3.85
269 270 1.197036 GGTTCGCAACAGCCTTTAGTC 59.803 52.381 2.28 0.00 0.00 2.59
270 271 1.235724 GGTTCGCAACAGCCTTTAGT 58.764 50.000 2.28 0.00 0.00 2.24
271 272 0.165944 CGGTTCGCAACAGCCTTTAG 59.834 55.000 2.28 0.00 0.00 1.85
272 273 1.231958 CCGGTTCGCAACAGCCTTTA 61.232 55.000 0.00 0.00 0.00 1.85
273 274 2.551912 CCGGTTCGCAACAGCCTTT 61.552 57.895 0.00 0.00 0.00 3.11
274 275 2.978010 CCGGTTCGCAACAGCCTT 60.978 61.111 0.00 0.00 0.00 4.35
277 278 2.775032 TAGTCCCGGTTCGCAACAGC 62.775 60.000 0.00 0.00 0.00 4.40
278 279 0.320073 TTAGTCCCGGTTCGCAACAG 60.320 55.000 0.00 0.00 0.00 3.16
279 280 0.106335 TTTAGTCCCGGTTCGCAACA 59.894 50.000 0.00 0.00 0.00 3.33
280 281 0.794473 CTTTAGTCCCGGTTCGCAAC 59.206 55.000 0.00 0.00 0.00 4.17
281 282 0.320946 CCTTTAGTCCCGGTTCGCAA 60.321 55.000 0.00 0.00 0.00 4.85
282 283 1.294138 CCTTTAGTCCCGGTTCGCA 59.706 57.895 0.00 0.00 0.00 5.10
283 284 1.449070 CCCTTTAGTCCCGGTTCGC 60.449 63.158 0.00 0.00 0.00 4.70
284 285 1.449070 GCCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
285 286 0.327259 AAGCCCTTTAGTCCCGGTTC 59.673 55.000 0.00 0.00 0.00 3.62
286 287 0.775542 AAAGCCCTTTAGTCCCGGTT 59.224 50.000 0.00 0.00 0.00 4.44
287 288 0.775542 AAAAGCCCTTTAGTCCCGGT 59.224 50.000 0.00 0.00 31.63 5.28
288 289 1.919240 AAAAAGCCCTTTAGTCCCGG 58.081 50.000 0.00 0.00 31.63 5.73
304 305 3.219281 GGCCTCAACACTGGTAGAAAAA 58.781 45.455 0.00 0.00 0.00 1.94
305 306 2.808933 CGGCCTCAACACTGGTAGAAAA 60.809 50.000 0.00 0.00 0.00 2.29
306 307 1.270625 CGGCCTCAACACTGGTAGAAA 60.271 52.381 0.00 0.00 0.00 2.52
307 308 0.320374 CGGCCTCAACACTGGTAGAA 59.680 55.000 0.00 0.00 0.00 2.10
308 309 1.972198 CGGCCTCAACACTGGTAGA 59.028 57.895 0.00 0.00 0.00 2.59
309 310 1.741770 GCGGCCTCAACACTGGTAG 60.742 63.158 0.00 0.00 0.00 3.18
310 311 2.345991 GCGGCCTCAACACTGGTA 59.654 61.111 0.00 0.00 0.00 3.25
311 312 4.988598 CGCGGCCTCAACACTGGT 62.989 66.667 0.00 0.00 0.00 4.00
316 317 4.666397 TAACGCGCGGCCTCAACA 62.666 61.111 35.22 6.28 0.00 3.33
317 318 3.849953 CTAACGCGCGGCCTCAAC 61.850 66.667 35.22 0.00 0.00 3.18
339 340 5.998553 TCTAAGGTAGAACAGCGAATATCG 58.001 41.667 0.00 0.00 43.89 2.92
340 341 7.594714 TCATCTAAGGTAGAACAGCGAATATC 58.405 38.462 0.00 0.00 38.50 1.63
341 342 7.526142 TCATCTAAGGTAGAACAGCGAATAT 57.474 36.000 0.00 0.00 38.50 1.28
342 343 6.954487 TCATCTAAGGTAGAACAGCGAATA 57.046 37.500 0.00 0.00 38.50 1.75
343 344 5.854010 TCATCTAAGGTAGAACAGCGAAT 57.146 39.130 0.00 0.00 38.50 3.34
344 345 5.651530 CTTCATCTAAGGTAGAACAGCGAA 58.348 41.667 0.00 0.00 38.50 4.70
345 346 5.250235 CTTCATCTAAGGTAGAACAGCGA 57.750 43.478 0.00 0.00 38.50 4.93
357 358 2.280628 GTTCGGGTGCCTTCATCTAAG 58.719 52.381 0.00 0.00 34.73 2.18
358 359 1.626321 TGTTCGGGTGCCTTCATCTAA 59.374 47.619 0.00 0.00 0.00 2.10
359 360 1.271856 TGTTCGGGTGCCTTCATCTA 58.728 50.000 0.00 0.00 0.00 1.98
360 361 0.400213 TTGTTCGGGTGCCTTCATCT 59.600 50.000 0.00 0.00 0.00 2.90
361 362 0.804989 CTTGTTCGGGTGCCTTCATC 59.195 55.000 0.00 0.00 0.00 2.92
362 363 0.400213 TCTTGTTCGGGTGCCTTCAT 59.600 50.000 0.00 0.00 0.00 2.57
363 364 0.400213 ATCTTGTTCGGGTGCCTTCA 59.600 50.000 0.00 0.00 0.00 3.02
364 365 1.200020 CAATCTTGTTCGGGTGCCTTC 59.800 52.381 0.00 0.00 0.00 3.46
365 366 1.247567 CAATCTTGTTCGGGTGCCTT 58.752 50.000 0.00 0.00 0.00 4.35
366 367 0.609131 CCAATCTTGTTCGGGTGCCT 60.609 55.000 0.00 0.00 0.00 4.75
367 368 1.595093 CCCAATCTTGTTCGGGTGCC 61.595 60.000 0.00 0.00 33.67 5.01
368 369 1.883021 CCCAATCTTGTTCGGGTGC 59.117 57.895 0.00 0.00 33.67 5.01
371 372 1.644786 GCGACCCAATCTTGTTCGGG 61.645 60.000 11.08 0.00 44.88 5.14
372 373 1.794222 GCGACCCAATCTTGTTCGG 59.206 57.895 11.08 0.00 34.32 4.30
373 374 1.419922 CGCGACCCAATCTTGTTCG 59.580 57.895 0.00 6.76 35.86 3.95
374 375 1.134694 GCGCGACCCAATCTTGTTC 59.865 57.895 12.10 0.00 0.00 3.18
375 376 2.677003 CGCGCGACCCAATCTTGTT 61.677 57.895 28.94 0.00 0.00 2.83
376 377 3.118454 CGCGCGACCCAATCTTGT 61.118 61.111 28.94 0.00 0.00 3.16
377 378 3.864686 CCGCGCGACCCAATCTTG 61.865 66.667 34.63 6.11 0.00 3.02
378 379 4.388499 ACCGCGCGACCCAATCTT 62.388 61.111 34.63 0.00 0.00 2.40
391 392 4.329545 TGAGGCCAACTCCACCGC 62.330 66.667 5.01 0.00 46.01 5.68
392 393 2.358737 GTGAGGCCAACTCCACCG 60.359 66.667 5.01 0.00 46.01 4.94
393 394 1.003233 GAGTGAGGCCAACTCCACC 60.003 63.158 22.15 3.91 46.01 4.61
394 395 1.003233 GGAGTGAGGCCAACTCCAC 60.003 63.158 35.72 21.74 46.82 4.02
395 396 3.483587 GGAGTGAGGCCAACTCCA 58.516 61.111 35.72 13.38 46.82 3.86
396 397 2.671682 GGGAGTGAGGCCAACTCC 59.328 66.667 34.23 34.23 46.01 3.85
397 398 2.266055 CGGGAGTGAGGCCAACTC 59.734 66.667 23.80 23.80 46.78 3.01
398 399 3.322466 CCGGGAGTGAGGCCAACT 61.322 66.667 5.01 8.42 0.00 3.16
399 400 3.316573 CTCCGGGAGTGAGGCCAAC 62.317 68.421 16.15 2.27 0.00 3.77
400 401 3.003173 CTCCGGGAGTGAGGCCAA 61.003 66.667 16.15 0.00 0.00 4.52
401 402 3.846405 AACTCCGGGAGTGAGGCCA 62.846 63.158 29.37 0.00 42.59 5.36
402 403 2.523453 GAAACTCCGGGAGTGAGGCC 62.523 65.000 29.37 13.21 42.59 5.19
403 404 1.079057 GAAACTCCGGGAGTGAGGC 60.079 63.158 29.37 15.11 42.59 4.70
404 405 0.247736 CAGAAACTCCGGGAGTGAGG 59.752 60.000 29.37 15.56 42.59 3.86
405 406 0.390472 GCAGAAACTCCGGGAGTGAG 60.390 60.000 29.37 19.10 42.59 3.51
534 542 0.462225 TGACTTTTTCGTGCGGTGGA 60.462 50.000 0.00 0.00 0.00 4.02
545 553 1.782028 GCGGCGGTCACTGACTTTTT 61.782 55.000 9.78 0.00 32.47 1.94
697 721 1.312371 GGTGGGTTATGTGCGTGCAT 61.312 55.000 0.00 0.12 0.00 3.96
698 722 1.969064 GGTGGGTTATGTGCGTGCA 60.969 57.895 0.00 0.00 0.00 4.57
699 723 2.874751 GGTGGGTTATGTGCGTGC 59.125 61.111 0.00 0.00 0.00 5.34
701 725 0.535553 AAACGGTGGGTTATGTGCGT 60.536 50.000 0.00 0.00 38.08 5.24
703 727 1.068125 GGAAAACGGTGGGTTATGTGC 60.068 52.381 0.00 0.00 38.08 4.57
706 730 3.011818 GGTAGGAAAACGGTGGGTTATG 58.988 50.000 0.00 0.00 38.08 1.90
708 732 2.038820 CTGGTAGGAAAACGGTGGGTTA 59.961 50.000 0.00 0.00 38.08 2.85
709 733 0.845337 TGGTAGGAAAACGGTGGGTT 59.155 50.000 0.00 0.00 41.76 4.11
711 735 0.958876 GCTGGTAGGAAAACGGTGGG 60.959 60.000 0.00 0.00 0.00 4.61
724 748 2.204074 TGGGGCAGGAAGCTGGTA 60.204 61.111 0.00 0.00 44.79 3.25
756 780 2.593978 CAGTCTGGGCATGGAGGG 59.406 66.667 0.00 0.00 0.00 4.30
848 872 1.201429 ACGAGGAATCCTTGGGCTGT 61.201 55.000 20.05 2.55 39.29 4.40
850 874 0.618968 AGACGAGGAATCCTTGGGCT 60.619 55.000 20.05 12.11 39.29 5.19
859 883 0.969149 TGCTGTGTGAGACGAGGAAT 59.031 50.000 0.00 0.00 0.00 3.01
906 930 3.887110 TCGAGTTCAAGTTCTGTGGTAGA 59.113 43.478 0.00 0.00 0.00 2.59
955 982 4.085733 CCTTCTTCAACCTCTCTCTCTCA 58.914 47.826 0.00 0.00 0.00 3.27
983 1317 0.758685 CATCCCGCTCTCCTCCTTCT 60.759 60.000 0.00 0.00 0.00 2.85
984 1318 1.745264 CATCCCGCTCTCCTCCTTC 59.255 63.158 0.00 0.00 0.00 3.46
985 1319 1.764054 CCATCCCGCTCTCCTCCTT 60.764 63.158 0.00 0.00 0.00 3.36
986 1320 2.123077 CCATCCCGCTCTCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
987 1321 3.237741 CCCATCCCGCTCTCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
988 1322 3.934962 GCCCATCCCGCTCTCCTC 61.935 72.222 0.00 0.00 0.00 3.71
989 1323 4.804420 TGCCCATCCCGCTCTCCT 62.804 66.667 0.00 0.00 0.00 3.69
990 1324 3.543536 GATGCCCATCCCGCTCTCC 62.544 68.421 0.00 0.00 31.76 3.71
991 1325 2.031768 GATGCCCATCCCGCTCTC 59.968 66.667 0.00 0.00 31.76 3.20
992 1326 3.933722 CGATGCCCATCCCGCTCT 61.934 66.667 2.88 0.00 34.40 4.09
1045 1379 3.499737 CTTCATGTGCCGCCGACC 61.500 66.667 0.00 0.00 0.00 4.79
1101 1435 2.584418 CAGCCCTCGCAGTCGATG 60.584 66.667 0.00 0.00 44.56 3.84
1143 1477 3.369052 GGATGGTACCTTTCATGTCGTCA 60.369 47.826 14.36 0.00 0.00 4.35
1162 1496 0.461961 CGGAAGGAGAAAGCTCGGAT 59.538 55.000 0.00 0.00 42.25 4.18
1185 1519 3.177228 AGATAGGGGAGGAATCGGATTG 58.823 50.000 8.18 0.00 0.00 2.67
1201 1577 5.784750 TGAAAGAAACATGTGCGAGATAG 57.215 39.130 0.00 0.00 0.00 2.08
1220 1596 6.875195 GGCAAGATTTTCTTTCCATCAATGAA 59.125 34.615 1.72 0.00 39.20 2.57
1221 1597 6.211986 AGGCAAGATTTTCTTTCCATCAATGA 59.788 34.615 8.33 0.00 41.37 2.57
1228 1604 4.895297 AGTTGAGGCAAGATTTTCTTTCCA 59.105 37.500 8.33 0.00 41.37 3.53
1239 1615 2.092429 AGTCACCAAAGTTGAGGCAAGA 60.092 45.455 0.00 0.00 0.00 3.02
1240 1616 2.301346 AGTCACCAAAGTTGAGGCAAG 58.699 47.619 0.00 0.00 0.00 4.01
1241 1617 2.435372 AGTCACCAAAGTTGAGGCAA 57.565 45.000 0.00 0.00 0.00 4.52
1242 1618 2.426738 CAAAGTCACCAAAGTTGAGGCA 59.573 45.455 0.00 0.00 0.00 4.75
1243 1619 2.223805 CCAAAGTCACCAAAGTTGAGGC 60.224 50.000 0.00 0.00 0.00 4.70
1244 1620 2.223805 GCCAAAGTCACCAAAGTTGAGG 60.224 50.000 0.00 0.00 0.00 3.86
1247 1623 1.480137 TGGCCAAAGTCACCAAAGTTG 59.520 47.619 0.61 0.00 0.00 3.16
1248 1624 1.756538 CTGGCCAAAGTCACCAAAGTT 59.243 47.619 7.01 0.00 31.81 2.66
1249 1625 1.064017 TCTGGCCAAAGTCACCAAAGT 60.064 47.619 7.01 0.00 31.81 2.66
1251 1627 2.158475 AGATCTGGCCAAAGTCACCAAA 60.158 45.455 7.01 0.00 31.81 3.28
1252 1628 1.425066 AGATCTGGCCAAAGTCACCAA 59.575 47.619 7.01 0.00 31.81 3.67
1253 1629 1.067295 AGATCTGGCCAAAGTCACCA 58.933 50.000 7.01 0.00 0.00 4.17
1255 1631 6.107901 AGATATAGATCTGGCCAAAGTCAC 57.892 41.667 7.01 0.00 41.12 3.67
1306 1686 3.117794 CTGCACAACCACAATCAAACAG 58.882 45.455 0.00 0.00 0.00 3.16
1349 1729 1.961277 ACCTTGTTCTGCTTCGGCG 60.961 57.895 0.00 0.00 45.37 6.46
1350 1730 0.884704 TCACCTTGTTCTGCTTCGGC 60.885 55.000 0.00 0.00 42.19 5.54
1389 1769 4.776322 CGCATCACCTTGGCCGGA 62.776 66.667 5.05 0.00 0.00 5.14
1407 1787 2.433664 GTCTTGTACGCCACCCGG 60.434 66.667 0.00 0.00 42.52 5.73
1416 1796 3.165498 CGCTTGCCGGTCTTGTAC 58.835 61.111 1.90 0.00 0.00 2.90
1650 2030 5.163884 GCCGGAGTCTTACAATTACAAAGAC 60.164 44.000 5.05 14.43 46.10 3.01
1685 2080 1.110442 GAGGAGCAGAGCAGCTAGAA 58.890 55.000 0.00 0.00 46.75 2.10
1693 2088 2.203181 GCCATGGAGGAGCAGAGC 60.203 66.667 18.40 0.00 41.22 4.09
1695 2090 2.685017 ACGCCATGGAGGAGCAGA 60.685 61.111 18.40 0.00 41.55 4.26
1702 2097 2.593468 ATCCCAACGACGCCATGGAG 62.593 60.000 18.40 16.40 36.27 3.86
1703 2098 1.331399 TATCCCAACGACGCCATGGA 61.331 55.000 18.40 7.33 36.27 3.41
1705 2100 1.148310 GATATCCCAACGACGCCATG 58.852 55.000 0.00 0.00 0.00 3.66
1706 2101 1.048601 AGATATCCCAACGACGCCAT 58.951 50.000 0.00 0.00 0.00 4.40
1709 2104 3.851976 ATCTAGATATCCCAACGACGC 57.148 47.619 2.53 0.00 0.00 5.19
1710 2105 5.875910 AGACTATCTAGATATCCCAACGACG 59.124 44.000 12.86 0.00 0.00 5.12
1711 2106 7.065324 CAGAGACTATCTAGATATCCCAACGAC 59.935 44.444 12.86 1.00 36.10 4.34
1712 2107 7.106890 CAGAGACTATCTAGATATCCCAACGA 58.893 42.308 12.86 0.00 36.10 3.85
1722 2132 7.726033 AAACACCAACAGAGACTATCTAGAT 57.274 36.000 10.73 10.73 36.10 1.98
1730 2140 4.589908 ACAAGAAAACACCAACAGAGACT 58.410 39.130 0.00 0.00 0.00 3.24
1771 2181 7.921041 ATACAGACCCATCTTCATCTTCTAA 57.079 36.000 0.00 0.00 30.42 2.10
1797 2207 2.614983 TCTTACACCAAACCGAAGCAAC 59.385 45.455 0.00 0.00 0.00 4.17
1867 2282 3.698040 GCCCATCTGATTGAGAACATTGT 59.302 43.478 0.00 0.00 33.12 2.71
1876 2293 1.521457 GCGACGCCCATCTGATTGA 60.521 57.895 9.14 0.00 0.00 2.57
1887 2308 1.469917 CAAATCAATCATGCGACGCC 58.530 50.000 18.69 0.00 0.00 5.68
1892 2313 5.295292 AGAAGACTACCAAATCAATCATGCG 59.705 40.000 0.00 0.00 0.00 4.73
1920 2341 8.809066 TCTTTCATTCACCAGATCAATCATTTT 58.191 29.630 0.00 0.00 0.00 1.82
1932 2358 4.892433 ACAGAGTCTCTTTCATTCACCAG 58.108 43.478 0.00 0.00 0.00 4.00
1954 2380 6.544928 TCCTGCTTGATTGATTGACTAGTA 57.455 37.500 0.00 0.00 0.00 1.82
1974 2400 2.044806 AACAGGAACAGCACGCTCCT 62.045 55.000 0.00 0.00 40.33 3.69
1994 2420 1.062525 CTTATCAGCGCCGTTTGCC 59.937 57.895 2.29 0.00 36.24 4.52
1995 2421 0.247695 GACTTATCAGCGCCGTTTGC 60.248 55.000 2.29 0.00 0.00 3.68
1996 2422 0.373716 GGACTTATCAGCGCCGTTTG 59.626 55.000 2.29 0.00 0.00 2.93
1997 2423 0.743345 GGGACTTATCAGCGCCGTTT 60.743 55.000 2.29 0.00 0.00 3.60
2085 2517 5.105063 GCTTGGGCAACTTCAGATATTTTC 58.895 41.667 0.00 0.00 38.54 2.29
2121 2553 2.480419 CCAATCTCAGTTTGGTGTCGAC 59.520 50.000 9.11 9.11 39.05 4.20
2145 2577 3.119495 GGTATGGTCCAAGAACAACATGC 60.119 47.826 0.00 0.00 31.09 4.06
2147 2579 3.563479 GGGGTATGGTCCAAGAACAACAT 60.563 47.826 0.00 0.00 31.09 2.71
2158 2590 1.683418 GACCGAGTGGGGTATGGTCC 61.683 65.000 0.00 0.00 42.57 4.46
2175 2607 2.291465 TGATGCACAAGAAACTGCAGAC 59.709 45.455 23.35 11.25 46.26 3.51
2202 2634 3.881688 TGTATTGTAGAGTAGGACGGAGC 59.118 47.826 0.00 0.00 0.00 4.70
2211 2643 2.223641 CCGCGGCTTGTATTGTAGAGTA 60.224 50.000 14.67 0.00 0.00 2.59
2214 2646 0.533491 ACCGCGGCTTGTATTGTAGA 59.467 50.000 28.58 0.00 0.00 2.59
2215 2647 0.650512 CACCGCGGCTTGTATTGTAG 59.349 55.000 28.58 0.00 0.00 2.74
2220 2652 0.604243 TTTGTCACCGCGGCTTGTAT 60.604 50.000 28.58 0.00 0.00 2.29
2221 2653 0.604243 ATTTGTCACCGCGGCTTGTA 60.604 50.000 28.58 7.02 0.00 2.41
2239 2671 9.454859 CTAAAATAAACTTCCAGTCAAGGAGAT 57.545 33.333 0.00 0.00 39.25 2.75
2289 2721 9.826574 TCTCGCCAAGTTATAAAATAATACTGT 57.173 29.630 0.00 0.00 0.00 3.55
2291 2723 9.826574 TGTCTCGCCAAGTTATAAAATAATACT 57.173 29.630 0.00 0.00 0.00 2.12
2312 2744 7.920738 ACATTTAGAAGTTTGACACTTGTCTC 58.079 34.615 10.63 0.00 46.53 3.36
2388 2830 2.874701 CGAGCTCCATTTTATCTGGGTG 59.125 50.000 8.47 0.00 34.36 4.61
2390 2832 3.134458 GACGAGCTCCATTTTATCTGGG 58.866 50.000 8.47 0.00 34.36 4.45
2391 2833 2.797156 CGACGAGCTCCATTTTATCTGG 59.203 50.000 8.47 0.00 34.93 3.86
2433 2875 7.797121 AATCAGTGGATAAAACCCTTTGAAT 57.203 32.000 0.00 0.00 32.09 2.57
2434 2876 7.508977 AGAAATCAGTGGATAAAACCCTTTGAA 59.491 33.333 0.00 0.00 32.09 2.69
2435 2877 7.010160 AGAAATCAGTGGATAAAACCCTTTGA 58.990 34.615 0.00 0.00 32.09 2.69
2436 2878 7.092716 CAGAAATCAGTGGATAAAACCCTTTG 58.907 38.462 0.00 0.00 32.09 2.77
2437 2879 6.782494 ACAGAAATCAGTGGATAAAACCCTTT 59.218 34.615 0.00 0.00 32.09 3.11
2440 2882 6.389906 CAACAGAAATCAGTGGATAAAACCC 58.610 40.000 0.00 0.00 32.09 4.11
2443 2885 6.716628 AGAGCAACAGAAATCAGTGGATAAAA 59.283 34.615 0.00 0.00 32.09 1.52
2606 3080 4.531659 CGATGTCCCGGAATTAACTTTC 57.468 45.455 0.73 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.