>input_sequence_73200
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-----------------------------------------------------ATGGGCATCGTGGACGTGGTGTCGGAG
TACTGCTCGCTGCCGCGGGGTCGGCGGCACATGAAGAAGCGGAAGCAGTTCCAGACGGTGGAGATGAAGGTCCGCATCGA
CTGCGAGGGCTGCGAGCGCAAGGTCAAGAAGGCCCTTGACGACATGAAAGGTACCATCCGAGCTTTCTCCTTCCGGCCCA
ATCCGAT------------------------------------------TCCTCCCCTATCTCGCACATGTTTCTTTCAT
TGATGGAAAGAAAATCTTGCCTCAACTTTGGTGA----CTTTGGCCAGATCTATATCTGGGGCGGCAGCTTTGCTCAAAG
TGTATCTGTTTGATTGTGGTTGTGCAGGCGTGAGCTCGGTGGAGGTGACGCCGAAGCAGAACAAGGTGACGGTGACGGGG
TACGTGGATCCGGCCAAGGTGATGCGCCGGGTGGCGTACAAGACCGGCAAGCGGGTGGAGCCGTGGCCCTACGTGCCGTA
CGACGTGGTGGCGCACCCCTACGCCCCGGGGGCCTACGACAAGCGCGCGCCCGCCGGCTACGTCCGCAACGTCATGAGCG
ACCCCTCCGCCGCGCCGCTCGCCAGGGCCTCCTCCACCGAGGCCAGGTACACCGCCGCATTCAGCGACGAGAACCCCAAC
GCATGCTCCGTCATGTAG--------------------------------------------------------------
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>chr2A_1_TraesCS2A01G064900
GGTTGGGAAGTTAGATGATTTGGAATGATGAGGGGTGATAAAAGAATAAATTGAGAAGTGATGAGGGGTGGTGATTAGAG
ACTAGAGGTTAGAATAATTCAGAAATTTGAAAAAAAAAATTCAATTTTTTTTTTCAAAAACCTGTGGCGGCCTTTAGTCG
CGGTTAGCCACAAGAACCGGGACTAAAGACTTTTGTCGCGGTCCGTAAGAGCCGCGGCTAAAGGGGGGGGTCTTTAGTCG
CGCTTATTTAGTCCCGGTTGCACAACCGGGACTAAAGGCTGTTGCGAACCGGGACTAAAGGGCTTTTTTCTACCAGTGTT
GAGGCCGCGCGTTAGGACGCGATATTCGCTGTTCTACCTTAGATGAAGGCACCCGAACAAGATTGGGTCGCGCGGTGGAG
TTGGCCTCACTCCCGGAGTTTCTGCGTGTT-------TGGCCGGTGGCCGGTGGCCGGAGTACGACCAGTATATAGACAG
ACGGATCCAAAGCGACGGTTACTCCTCCGGGTCGCCGTGGTGGTCGGCCGGCCGTTTCCTCTCCACCGCACGAAAAAGTC
AGTGACCGCCGCTCCCACGCCACTCGTGCTGCCACCGCTC---------------CCTTGGCCGCGGCGGTGAGCGTCAC
CGTCGCTCACCAGCGCTCACATGGCACCATGCCGCCACCTGGCGCTGCCGACCACGCG-GGGCCCACTCGCCAGCCACAC
ATGCACGCACATAACCCACCGTTTTCCTACCAGCTTCCTGCCCCACACGGCCGCACCACCCCTCCATGCCCAGACTGCCT
GGCTCCGCCCACACGTGTCGCGCCGGCAGTGGGCGAGCACGCTCCCCCGGACGCCTATAAACGCAGCCCCCACAGCCCAA
GGATTCCTCGTCTCACACAGCATCTCATCCAGCACCAGCAACCAGCAGTTCTACC--ACAGAACTTGAACTCGAATCCAG
CTGAACAATTTCTTGGG-CTTTGAGAGAGA--------------------------------------------------
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-----------------GAGGTTGAAGAAGGAAGGAAGAAGGAGGAGAGCGGGATGGGCATCGTGGACGTGGTGTCGGAG
TACTGCTCGCTGCCGCGGGGTCGGCGGCACATGAAGAAGCGGAAGCAGTTCCAGACGGTGGAGATGAAGGTCCGCATCGA
CTGCGAGGGCTGCGAGCGCAAGGTCAAGAAGGCCCTTGACGACATGAAAGGTACCATCCGAGCTTTCTCCTTCCGGCCCA
ATCCGAT------------------------------------------TCCTCCCCTATCTCGCACATGTTTCTTTCAT
TGATGGAAAGAAAATCTTGCCTCAACTTTGGTGA----CTTTGGCCAGATCTATATCTGGGGCGGCAGCTTTGCTCAAAG
TGTATCTGTTTGATTGTGGTTGTGCAGGCGTGAGCTCGGTGGAGGTGACGCCGAAGCAGAACAAGGTGACGGTGACGGGG
TACGTGGATCCGGCCAAGGTGATGCGCCGGGTGGCGTACAAGACCGGCAAGCGGGTGGAGCCGTGGCCCTACGTGCCGTA
CGACGTGGTGGCGCACCCCTACGCCCCGGGGGCCTACGACAAGCGCGCGCCCGCCGGCTACGTCCGCAACGTCATGAGCG
ACCCCTCCGCCGCGCCGCTCGCCAGGGCCTCCTCCACCGAGGCCAGGTACACCGCCGCATTCAGCGACGAGAACCCCAAC
GCATGCTCCGTCATGTAGTAGTAGTAGTAGTCTTTGTAATTGTAAGACTCCGGC---------------CGGCGACCTTT
TCTAGCTGCTCTGCTCCTCCATGGCGT-------------C--GTTGGGATATCTAGATAGTCTCTGTTGGTGTTTTCTT
GTACTATTTTTTAAACTAGATTAGAAGATGAAGATGGGTCTGTATTGTTGCTTCGGTTTGG----TGTAAGATATGTTGG
ATTTGGTGAGGA-GAAGCTCCATCAATCTTGTTGTTTATGCACAA--TGTTCTCAATCA----GATGGGCGTCGCATGAT
TGATTTGGTAGTCTTCTGAAAAA-----ATGATTGATCTGGTGAATGAAAGAGACTCTGTACTAGTCAATCAATCAAGCA
GGAGCGTGCTGTTCCTGTTGGCA------AACGGCGCTGATAAGTCCCCTTGACCAACATTTATTCATAGCCAAAGTCCC
AAAGATAATCACAATCTTACTGTTCTGAAACTTGGGGAAAATATCTGAAGTTGCCCAAGCACATCAGGCCAGGTCGACAC
CAAACTGAGATTGGCAGCATGTTGTTCTTGGACCATACCCCACTCGGTCTGCAGTTTCTTGTGCATCACTCTGGCTCCGT
CCTACTCTACAATACAAGCCGCGGTGACAAATCTCCTTGACTGGAAGTTTATTTTAGACAAAGTTAATCATACTACAAAT
ACAGTATTATTTTATAACTTGGCG-----AGACAAGTGTCAAACTTCTAAATGTATGAGAT-----GGTAAGATATTTGA
AGTTAGTGAAGCAAAAATATAAGACACCACACCCAGATAAAATGGAGCTCGTCGTTATTTTTTTAGTATTATTCATTCAA
AGGGTTTTATCCACTGATTTCTGTTGCTCTCGTCTCCGGGCACTGATTAAGACTCAGCTCAGTCGGTAACTTCC------
-------------------------AAAGGAAGAAAAGGACGCAATTGAGTTGTCAAAAAGATAAATAGAGAAGAAGTTA
CCAGATAAGGTAACTGATGAGTCGGTGTTATCTTAG-CCGAAAGTTAATTCCGGGACATCGGGAAATTTATT
>chr2B_407
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------TCACTCCCGGAGTTTCTGCGCGACTTGCCGGTGGTCGGTGGCCGGTGGCCGGAGTACGACCAGTGTATCGACAG
ACGGGTCCAAAGCGACGGTTACTACTCCGGGTCGCCGGCGTGGTCGCCCGGCCGTTTCCTCGCCACCGCACG-AAAAGTC
AGTGACCGCCGCTCCCACGCCA---------------CTC---------------CCTTGGCCGCGGCGGTGAGCGTCAC
CGTCGCTCACTAGCGGTCACATGGCACCATACCGCCACCTGGCGCTGCCGACCACGCG-GGGCCCACTCGCCAGCCACAC
CCACGCCCATAATAACCACCGTTCTCCCACCAGCTTCCTCCCCCACACGGCCGCACCACGCCTCCATGCGCAGACTGCCT
GGCTCCGCCCACACGTGTCGCGCCGGCAGTGGGCGAGCACGCTCCCCCGGACGCCTATAAACTGAGCCCCCCCGGCCCAA
GGTTTCCTCGTCTCACACAGCATCTCATCCAGCAG----------------TACC--ACAGAACTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGAGGTTGAAGAAGGAAGGA----------GAGCGGGATGGGCATCGTGGACGTGGTGTCGGAG
TACTGCTCGCTGCCGCGGAGTCGGCGGCACATGAAGAGGCGGAAGCAGTTCCAGACGGTGGAGATGAAGGTGCGGATCGA
CTGCGAGGGCTGCGAGCGCAAGGTCAAGAAGGCCCTCGACGACATGAAAGGTACGGTCCAAGCTTTCTCCTTCCGGCCGA
ATCCGAT------------------------------------------TCCTCCCGTATCTCGCACATGTTTCTC-CAT
TGACGGAAAGAAAAGGAAATCTTGCCCCGGCTTCTTTTCTTTGGCCAGATCTATATCTGGGGCGGCAGCTTTGCTTAAAG
TGTATGTGTTTGATTGTGGTC--GCAGGCGTGAGCTCGGTGGAGGTGATCCCGAAGCAGAACAAGGTGACGGTGACGGGG
TACGTGGACCCGGCCAAGGTGATGCGGCGGGTGGCATACAAGACCGGCAAGCGGGTGGAGCCGTGGCCCTACGTCCCCTA
CGACGTGGTGGCGCACCCCTACGCCCCGGGCGCCTACGACAAGCGCGCCCCCGCCGGCTACGTCCGCAACGTCATGAGCG
ACCCCTCCGCCGCGCCGCTCGCCAGGGCCTCCTCCACCGAGGCCAGGTACACCGCCGCCTTCAGCGACGAGAACCCCAAC
GCCTGCTCCGTCATGTAGTAGTACTAGTACTCTTTGTAATTGTAAGACCCCGGCCGGCCGGGTAGCCGTCGGCGACCTTC
TCTAGCTTCCCTGCTCTGCTTTGCTCCTCCGGGGTGGCGGC--GTTGGGATCTCTAGATGGTCTCTGCTGGTGTTTTCTT
CTAC---TTTTGAAACTAGACTAGAAGATGAAGATGGGTCTGTATTCTTGCTTCGGTTTGG----TGTAAGATATGTTGG
ATTTGGTGAGGAGGAAGCTCCATCAATCTTGTTGTTTATGCGCAAAATGTTCCCAATCAGATCGATGAGCGTTGCATGAT
TGATTCGGTGACCTTCTGAAGAAGATGAATGATTGATTTGGTGAATGAAAGAGACTCTGCACTAGTCAATCAATCAGTCG
--------------------------------GGAGCTGATAAGTCCCCCTGACCAACATTTATTCATAGCCGAAGTCCC
AAAGATGATCACAATCTTACTGTTCTGAAACTTGGGACAAATATCTGAAGTCGCCCAAGCACATCAGGCCAGATCGACAC
CAAACTGAGATTGGCAACTCGTTGTACTTCGACCATACCCCACTTGATCTGCAGTTTCT-------------GTCTCCGT
GCCACCAC-----ACAAGCCGCGGTGACAAGTCTCCTTGGGCAGGAGTTCATTTTAGACAAAGTTAATCATACTACAAAT
C-----TTATTTTAGAACTTGGCTGGGCTAGACAAGTGTCAAACTTCTAAATGTATGAGAT-----GGTAAAATATTTGA
AGTTGGTGAAGCAAAAATATAAGACACCAAAATCAGATAAAAAGGGGCTCCTCGTAGTTATTTTTGTTG--TTC-----A
AAGGGTTTATCCACTGATTTCTGTAGCTCCCGTCTCCGGGCACTGATTAAGGCTCAGCTCGGTCCGTAACTTCCATAGGA
ATTACCCGCACAAAAAAGAACTTTGAAAGGAAGAAAAGGACGCAATTGAGTTGTCAAAAAGGAAAATAGAGAAGATGTTA
CCAGATAAGGTAACTGATGAGTCGGTGTTATCTTAG-CCAAAAGTTAATTCC--------------------
>chr2D_431
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-------------------------------------TGGTCGGTGGCCGGTGGACGGAGTACGACCAGTACATAGACAG
ACGGATCCAAAGCGACGGTTACTACTCCGGGTCGCCGGCGTGGTCGGCCGGCCGTTTCCTCGCCAGCGCACG-AAAAGTC
AGTGGCCGCCGCTCCCACGCCA---------------CTCGTGCTGCCACCGCTCCCTTGGCCGCGGCGATGAGCGTCAC
CATCGCTGCTCAGTGCTCACATGGCACCATACCGCCACCTGGCGCTGCCGACCACGCGCGGGCCCACTCGCCAGCCACAC
CCACGCCCATAATAACCACCGTTTTCCCACCAGCTTCCTCCCCCACACGGCCGCACCACGCCTCCATGCGCAGACTGCCT
GGCTCCGCCCACACGTGTCGCGCCGGCAGTGAGCGAGCACGCTCCCCCGGGCGCCTATAAACACGG-CCCCCCGGCCCAA
GGTTTCCTCGTCTCACACAGCATCTCATCCAGCACCAGCAACCAGCAGTGCTTCTCTACAAAACTTGAACTCGAATCCAG
CTGAACAATTTCTTGGGGCTTCGAGAGAGA--------------------------------------------------
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-----------------GATC-------------------------GAGCAGGATGGGCATCGTGGACGTGGTGTCGGAG
TACTGCTCGCTGCCGCGGAGTCGGCGGCACATGAAGAGGCGGAAGCAGTTCCAGACGGTGGAGATGAAGGTCCGGATCGA
CTGCGAGGGCTGCGAGCGCAAGGTCAAGAAGGCCCTCGACGACATGAAAGGTACCCTCGAGCTCTGTTCCTTTCCTCTAG
AAAGATTAGATTGATTCTCCACCACCGACCACCAGAGGGATCGGATTCCTCCTCCCTGACCCAGCACATGTTTCTC-CAT
CGGGGG-----AAAGGAAATCTTGCCCCGGCTCCTTTTCTTTGGCCAGATCTATATCTGGGGCGGCAGCTTTGCTCAAAG
TGTGTGTGTCCATT--TGGTTTTGCAGGCGTGAGCTCGGTGGAGGTGATCCCGAAGCAGAACAAGGTGACGGTGACGGGG
TACGTGGACCCGGCCAAGGTGATGCGGCGGGTGGCATACAAGACCGGCAAGCGGGTGGAGCCGTGGCCCTACGTGCCGTA
CGACGTGGTGGCGCACCCCTACGCGCCGGGGGCCTACGACAAGCGCGCCCCCGCCGGCTACGTCCGCAACGTCATGAGCG
ACCCCTCCGCCGCGCCGCTCGCCCGGGCCTCCTCCACCGAGGCCAGGTACACCGCCGCATTCAGCGACGAGAACCCCAAC
GCATGCTCCGTCATGTAGTAGTAGTAATGTTTGTTTGTAAGAGA-----------------------------GACCTTC
TCTAGCTTCCCCGCTCTGCTCTGCTCATCCATGGCGGCGTTGTGTTGGGATCTCTAGATGGTCGCTGTTGGTGTTCTCTT
GTACT---TTTGAAACTAGGCTAGAAGATGAAGATGGGTCTGTATTCTTGCTTCGGTTTGGTTTATGTAAGATATGTTGG
ATTTGGTGAGGAGGAAGCTCCATCAATCTTGTTGTTTATGCGCAAAATGTTCCCAATCAGAC----GAGCGTTGCATGAT
TGATTTGGTGACCTTCTGAAGAAGATGAATGATTGATTTGGTGAATGAAAGAGACTCTGCGCTAGTT----AATCAGGCG
GGAGCGTGCTGTTCCTGTTCCTGTTGGGCAACGGCGCTGATAAGTCCCCTTGACCAACATTTATTCATAGCCAAAGTCCC
AAAGATAATCACAATCTCACTGTTCCGGAACTT-GGAAAAATATCTGAAGTTGCCCAAGCACATCAGGCCAGATCGACAA
CAAACTGAGATTGGCAACGTGTTGCTCTATGATG--ACCCCACTCGATCCGGAGTTTCTTGTGCATCACTCTGTCTCCGT
CCCACAATACA--ACAAGCTGCAGTGGCAAGTCTCCTTGACCAGGAGCTTACTTCAGACAAAGTTAATCATACTACAAAT
C-----TTATTTTAGTACTTGGCTGGGCTAGACAAGTGTCAAACTTCTAAATATATGAGATGAGAAGGTAAAATATTTGA
AGTTAGTGAAGCAAAAATATAAGACACCAAAATCAGATAAAAAGGGGCTCGTCATGCTTATTTTTTTATTATTC-----A
AAGGGTTTATGGACTGATTTCTGTTGCTCTCGTCTCGGGTCACTGATTAAGACTCAGCTCGGTCCGTAACTTCCA-----
--------------------------AAGGAAGAAAAGGACGCAATTGAGTTGCCAGAAAGAAAAACAGAGAAGATGTTA
CCAGATAAGGTAACTGATGAGTCGGTGTTATCTTAGCCCAAAAGTTAATTCCGGGACATCAGGAAATTTA--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------S-SS----------S---------------------------------------
-----------------------S-------------SS----------------------S----------S-------
----------------------SSSSSSSSSSSSSSS-------------------------------------------
------------------------------S-------------------------------------------------
SSS-S-S--S-SS-S------------S-----------S-------------------S---------S----------
--------------------------------------------------------------S--------S-S------
--S----------------------------------------------S------------------------------
---------------------S----------------------------------------------------------
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------------------------------------SSSSSSSSSS----------------------------------
------------------S------------------S------------------------------------S-----
------------------------------------S------------------S---S------------------S-
--------------------------------------------------------S------------------SS---
---S----------SSSSSS--SSS-SSS-S-SS----------------------------------------------
-----S---------------S--------------------------SS------------------------------
--------S-----------------S--------S--------------------------------------------
------------------------------------------------S-------------------------------
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-----------------------------S------------------S------------------------------S
-------S-S------SS-SS--SSSS------------------------S-------S--------------------
-----SS----S--------S-------------------------S---------------------------------
-----------------------------------------S----------S--------------S----S-------
---------SSS--------S----------------S---------------------S----------------S--S
-------------------SSSS---------------------------------------------------------
------------------------------------S-----------------------------------S-------
----------------S-S----------S----------------S--------------------------S------
--S--SS----SS-----------------S----------SS-S-----------------------------------
SSSSSS--------S--------S-----------------------------------------------S--------
-----------------------------S-SS---------S--S---------SS--S----S---------SSSSS-
-S--S-------------------------------------------------------S---S---------------
--------------------------------------------------------------S------------S----
---------------------------------------S--------------------S---------SS
>forward_210
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------------------------------TTTTGTCGCGGTCCGTAAGA------------------------------
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>reverse_2421
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--------------------GCAAACGGCGCTGATAAGTC----------------------------------------
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