Multiple sequence alignment - TraesCS2A01G000300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G000300 chr2A 100.000 2528 0 0 1 2528 274018 271491 0.000000e+00 4669.0
1 TraesCS2A01G000300 chr2A 77.852 149 18 10 8 148 193874655 193874514 7.500000e-11 78.7
2 TraesCS2A01G000300 chr2B 92.109 697 27 9 919 1601 11018528 11019210 0.000000e+00 957.0
3 TraesCS2A01G000300 chr2B 86.649 764 49 17 1783 2528 11031302 11032030 0.000000e+00 797.0
4 TraesCS2A01G000300 chr2B 78.736 522 33 35 167 669 11018055 11018517 6.890000e-71 278.0
5 TraesCS2A01G000300 chr2B 96.429 168 6 0 731 898 710833393 710833226 6.890000e-71 278.0
6 TraesCS2A01G000300 chr2B 90.217 92 9 0 1660 1751 11031214 11031305 1.230000e-23 121.0
7 TraesCS2A01G000300 chr2D 94.685 508 16 4 1031 1535 261696 262195 0.000000e+00 778.0
8 TraesCS2A01G000300 chr2D 79.680 876 73 45 1678 2528 262690 263485 3.700000e-148 534.0
9 TraesCS2A01G000300 chr7A 95.906 171 7 0 728 898 589994046 589994216 6.890000e-71 278.0
10 TraesCS2A01G000300 chr7A 79.688 128 18 5 99 223 669610180 669610058 4.480000e-13 86.1
11 TraesCS2A01G000300 chr4B 96.429 168 6 0 731 898 658178326 658178159 6.890000e-71 278.0
12 TraesCS2A01G000300 chr3A 96.386 166 6 0 731 896 710866860 710866695 8.910000e-70 274.0
13 TraesCS2A01G000300 chr3A 94.798 173 9 0 732 904 36310115 36309943 1.150000e-68 270.0
14 TraesCS2A01G000300 chr3A 80.909 110 11 9 2105 2210 66360198 66360301 7.500000e-11 78.7
15 TraesCS2A01G000300 chr3A 95.349 43 0 2 2167 2208 643214956 643214997 1.620000e-07 67.6
16 TraesCS2A01G000300 chr6A 95.322 171 8 0 728 898 469845230 469845400 3.200000e-69 272.0
17 TraesCS2A01G000300 chr3B 95.322 171 8 0 727 897 2103306 2103136 3.200000e-69 272.0
18 TraesCS2A01G000300 chr3B 87.500 104 8 4 28 130 25247637 25247736 5.710000e-22 115.0
19 TraesCS2A01G000300 chr3B 85.981 107 9 5 24 128 16057438 16057336 2.660000e-20 110.0
20 TraesCS2A01G000300 chr1A 95.833 168 7 0 730 897 494815580 494815413 3.200000e-69 272.0
21 TraesCS2A01G000300 chr4A 92.513 187 13 1 722 908 583979349 583979534 1.490000e-67 267.0
22 TraesCS2A01G000300 chr4A 79.333 150 20 9 38 179 589618199 589618053 7.450000e-16 95.3
23 TraesCS2A01G000300 chr4A 100.000 32 0 0 2163 2194 572212783 572212752 2.720000e-05 60.2
24 TraesCS2A01G000300 chr3D 97.753 89 2 0 1056 1144 611746433 611746345 1.210000e-33 154.0
25 TraesCS2A01G000300 chr3D 81.579 76 6 6 2363 2432 54681348 54681275 3.510000e-04 56.5
26 TraesCS2A01G000300 chr1D 80.357 168 23 8 16 179 411782990 411783151 4.420000e-23 119.0
27 TraesCS2A01G000300 chr1D 100.000 38 0 0 2163 2200 487906639 487906676 1.250000e-08 71.3
28 TraesCS2A01G000300 chr4D 85.714 98 13 1 75 172 375559294 375559390 4.450000e-18 102.0
29 TraesCS2A01G000300 chr4D 81.395 129 19 4 31 154 508505026 508505154 1.600000e-17 100.0
30 TraesCS2A01G000300 chr4D 82.105 95 11 6 2165 2257 64619151 64619061 2.700000e-10 76.8
31 TraesCS2A01G000300 chr4D 100.000 28 0 0 2386 2413 11910294 11910321 5.000000e-03 52.8
32 TraesCS2A01G000300 chr1B 80.451 133 20 6 22 149 528388479 528388610 2.070000e-16 97.1
33 TraesCS2A01G000300 chr7B 84.536 97 11 3 85 179 79104861 79104767 2.680000e-15 93.5
34 TraesCS2A01G000300 chr5A 77.348 181 23 12 39 207 448643477 448643303 9.630000e-15 91.6
35 TraesCS2A01G000300 chr5D 93.478 46 1 1 2165 2210 7079902 7079945 1.620000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G000300 chr2A 271491 274018 2527 True 4669.0 4669 100.0000 1 2528 1 chr2A.!!$R1 2527
1 TraesCS2A01G000300 chr2B 11018055 11019210 1155 False 617.5 957 85.4225 167 1601 2 chr2B.!!$F1 1434
2 TraesCS2A01G000300 chr2B 11031214 11032030 816 False 459.0 797 88.4330 1660 2528 2 chr2B.!!$F2 868
3 TraesCS2A01G000300 chr2D 261696 263485 1789 False 656.0 778 87.1825 1031 2528 2 chr2D.!!$F1 1497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 765 0.105913 ACCAGCTAGCTACTCCCTCC 60.106 60.0 18.86 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2481 0.178964 TGCCAAAACTGGAAGAGGGG 60.179 55.0 0.0 0.0 37.43 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.775053 TTAGCCATGTATTTGAAAAGGTCTT 57.225 32.000 0.00 0.00 0.00 3.01
25 26 6.670695 AGCCATGTATTTGAAAAGGTCTTT 57.329 33.333 0.00 0.00 0.00 2.52
26 27 7.066307 AGCCATGTATTTGAAAAGGTCTTTT 57.934 32.000 8.26 8.26 44.59 2.27
27 28 8.189119 AGCCATGTATTTGAAAAGGTCTTTTA 57.811 30.769 8.47 0.00 42.26 1.52
28 29 8.306761 AGCCATGTATTTGAAAAGGTCTTTTAG 58.693 33.333 8.47 0.00 42.26 1.85
29 30 8.303876 GCCATGTATTTGAAAAGGTCTTTTAGA 58.696 33.333 8.47 0.00 42.26 2.10
36 37 9.860898 ATTTGAAAAGGTCTTTTAGATGTATGC 57.139 29.630 8.47 0.00 42.26 3.14
37 38 7.994425 TGAAAAGGTCTTTTAGATGTATGCA 57.006 32.000 8.47 0.00 42.26 3.96
38 39 8.402798 TGAAAAGGTCTTTTAGATGTATGCAA 57.597 30.769 8.47 0.00 42.26 4.08
39 40 8.855110 TGAAAAGGTCTTTTAGATGTATGCAAA 58.145 29.630 8.47 0.00 42.26 3.68
40 41 9.691362 GAAAAGGTCTTTTAGATGTATGCAAAA 57.309 29.630 8.47 0.00 42.26 2.44
116 117 9.558396 AATGTTGGTCATGTATTTGAAAAATGT 57.442 25.926 0.00 0.00 36.81 2.71
117 118 8.954950 TGTTGGTCATGTATTTGAAAAATGTT 57.045 26.923 0.00 0.00 0.00 2.71
142 143 9.680315 TTAAACGTGTATTTAAAATGTTCCTGG 57.320 29.630 0.00 0.00 32.41 4.45
143 144 6.887626 ACGTGTATTTAAAATGTTCCTGGT 57.112 33.333 0.00 0.00 0.00 4.00
144 145 6.674066 ACGTGTATTTAAAATGTTCCTGGTG 58.326 36.000 0.00 0.00 0.00 4.17
145 146 6.263617 ACGTGTATTTAAAATGTTCCTGGTGT 59.736 34.615 0.00 0.00 0.00 4.16
146 147 7.444792 ACGTGTATTTAAAATGTTCCTGGTGTA 59.555 33.333 0.00 0.00 0.00 2.90
147 148 8.455682 CGTGTATTTAAAATGTTCCTGGTGTAT 58.544 33.333 0.00 0.00 0.00 2.29
155 156 8.415950 AAAATGTTCCTGGTGTATATGAAACA 57.584 30.769 0.00 0.00 0.00 2.83
156 157 7.391148 AATGTTCCTGGTGTATATGAAACAC 57.609 36.000 0.00 0.00 45.21 3.32
233 240 8.490311 TGGACAAATAAAAATGGAAGGAAAACT 58.510 29.630 0.00 0.00 0.00 2.66
234 241 8.773645 GGACAAATAAAAATGGAAGGAAAACTG 58.226 33.333 0.00 0.00 0.00 3.16
235 242 8.675705 ACAAATAAAAATGGAAGGAAAACTGG 57.324 30.769 0.00 0.00 0.00 4.00
236 243 8.271458 ACAAATAAAAATGGAAGGAAAACTGGT 58.729 29.630 0.00 0.00 0.00 4.00
259 268 5.121454 GTGAAAGCCAAACACAACAATTTCA 59.879 36.000 0.00 0.00 34.15 2.69
260 269 5.879223 TGAAAGCCAAACACAACAATTTCAT 59.121 32.000 0.00 0.00 32.24 2.57
263 272 4.810491 AGCCAAACACAACAATTTCATGAC 59.190 37.500 0.00 0.00 0.00 3.06
266 275 6.707711 CCAAACACAACAATTTCATGACAAG 58.292 36.000 0.00 0.00 0.00 3.16
269 278 7.760131 AACACAACAATTTCATGACAAGAAG 57.240 32.000 0.00 0.00 0.00 2.85
272 281 8.034215 ACACAACAATTTCATGACAAGAAGAAA 58.966 29.630 0.00 0.00 34.83 2.52
273 282 8.871862 CACAACAATTTCATGACAAGAAGAAAA 58.128 29.630 0.00 0.00 34.13 2.29
274 283 9.603921 ACAACAATTTCATGACAAGAAGAAAAT 57.396 25.926 0.00 0.00 34.13 1.82
283 292 6.560253 TGACAAGAAGAAAATTACTGAGGC 57.440 37.500 0.00 0.00 0.00 4.70
292 301 9.788960 GAAGAAAATTACTGAGGCGAATTTATT 57.211 29.630 0.00 2.92 32.88 1.40
300 309 5.822519 ACTGAGGCGAATTTATTATGCTTGA 59.177 36.000 0.00 0.00 0.00 3.02
384 393 5.989477 AGATATTTCGGTCCTTGATCAACA 58.011 37.500 3.38 0.00 0.00 3.33
385 394 6.414732 AGATATTTCGGTCCTTGATCAACAA 58.585 36.000 3.38 0.00 36.97 2.83
407 422 3.703556 AGCACAGCTAGCTCAAGAGAATA 59.296 43.478 16.15 0.00 38.01 1.75
408 423 4.344679 AGCACAGCTAGCTCAAGAGAATAT 59.655 41.667 16.15 0.00 38.01 1.28
409 424 5.538053 AGCACAGCTAGCTCAAGAGAATATA 59.462 40.000 16.15 0.00 38.01 0.86
411 426 6.873076 GCACAGCTAGCTCAAGAGAATATAAT 59.127 38.462 16.15 0.00 0.00 1.28
412 427 7.148606 GCACAGCTAGCTCAAGAGAATATAATG 60.149 40.741 16.15 0.77 0.00 1.90
413 428 7.871973 CACAGCTAGCTCAAGAGAATATAATGT 59.128 37.037 16.15 1.47 0.00 2.71
414 429 9.083422 ACAGCTAGCTCAAGAGAATATAATGTA 57.917 33.333 16.15 0.00 0.00 2.29
468 483 5.262588 TGCATATTCTAACTCTGCTTCGA 57.737 39.130 0.00 0.00 34.02 3.71
470 485 5.923114 TGCATATTCTAACTCTGCTTCGATC 59.077 40.000 0.00 0.00 34.02 3.69
471 486 5.060323 GCATATTCTAACTCTGCTTCGATCG 59.940 44.000 9.36 9.36 0.00 3.69
472 487 3.422417 TTCTAACTCTGCTTCGATCGG 57.578 47.619 16.41 0.48 0.00 4.18
473 488 2.366533 TCTAACTCTGCTTCGATCGGT 58.633 47.619 16.41 0.00 0.00 4.69
474 489 3.538591 TCTAACTCTGCTTCGATCGGTA 58.461 45.455 16.41 2.87 0.00 4.02
475 490 3.943381 TCTAACTCTGCTTCGATCGGTAA 59.057 43.478 16.41 1.82 0.00 2.85
476 491 2.853731 ACTCTGCTTCGATCGGTAAG 57.146 50.000 16.41 13.38 0.00 2.34
477 492 1.202313 ACTCTGCTTCGATCGGTAAGC 60.202 52.381 26.18 26.18 46.60 3.09
478 493 1.066303 CTCTGCTTCGATCGGTAAGCT 59.934 52.381 30.05 0.00 46.57 3.74
479 494 1.476891 TCTGCTTCGATCGGTAAGCTT 59.523 47.619 30.05 3.48 46.57 3.74
494 509 8.138365 TCGGTAAGCTTGCTTGTTATAATTAG 57.862 34.615 17.04 0.00 0.00 1.73
496 511 8.276325 CGGTAAGCTTGCTTGTTATAATTAGAG 58.724 37.037 17.04 0.00 0.00 2.43
500 515 8.371770 AGCTTGCTTGTTATAATTAGAGTAGC 57.628 34.615 0.00 0.00 0.00 3.58
501 516 8.207545 AGCTTGCTTGTTATAATTAGAGTAGCT 58.792 33.333 0.00 0.00 0.00 3.32
502 517 9.477484 GCTTGCTTGTTATAATTAGAGTAGCTA 57.523 33.333 0.00 0.00 0.00 3.32
504 519 9.459640 TTGCTTGTTATAATTAGAGTAGCTACG 57.540 33.333 17.99 0.00 0.00 3.51
505 520 8.627403 TGCTTGTTATAATTAGAGTAGCTACGT 58.373 33.333 17.99 12.01 0.00 3.57
512 527 6.712179 AATTAGAGTAGCTACGTAGGCTTT 57.288 37.500 23.47 12.26 40.74 3.51
531 546 5.065914 GCTTTGATGATAGGTAAGGATGCA 58.934 41.667 0.00 0.00 0.00 3.96
532 547 5.532406 GCTTTGATGATAGGTAAGGATGCAA 59.468 40.000 0.00 0.00 0.00 4.08
533 548 6.208204 GCTTTGATGATAGGTAAGGATGCAAT 59.792 38.462 0.00 0.00 0.00 3.56
534 549 7.255730 GCTTTGATGATAGGTAAGGATGCAATT 60.256 37.037 0.00 0.00 0.00 2.32
535 550 7.750229 TTGATGATAGGTAAGGATGCAATTC 57.250 36.000 0.00 0.00 0.00 2.17
536 551 6.840527 TGATGATAGGTAAGGATGCAATTCA 58.159 36.000 0.00 0.00 0.00 2.57
537 552 7.464273 TGATGATAGGTAAGGATGCAATTCAT 58.536 34.615 0.00 0.00 38.32 2.57
538 553 7.392393 TGATGATAGGTAAGGATGCAATTCATG 59.608 37.037 0.00 0.00 35.05 3.07
561 576 7.031226 TGCATGGCTAAACAATCTAATCTTC 57.969 36.000 0.00 0.00 0.00 2.87
586 601 4.032960 TGGCATCACCACTTGACTAATT 57.967 40.909 0.00 0.00 46.36 1.40
587 602 5.172687 TGGCATCACCACTTGACTAATTA 57.827 39.130 0.00 0.00 46.36 1.40
588 603 5.565509 TGGCATCACCACTTGACTAATTAA 58.434 37.500 0.00 0.00 46.36 1.40
590 605 7.342581 TGGCATCACCACTTGACTAATTAATA 58.657 34.615 0.00 0.00 46.36 0.98
591 606 7.831690 TGGCATCACCACTTGACTAATTAATAA 59.168 33.333 0.00 0.00 46.36 1.40
592 607 8.345565 GGCATCACCACTTGACTAATTAATAAG 58.654 37.037 0.00 0.00 36.92 1.73
593 608 7.857885 GCATCACCACTTGACTAATTAATAAGC 59.142 37.037 0.00 0.00 36.92 3.09
595 610 9.632638 ATCACCACTTGACTAATTAATAAGCAT 57.367 29.630 0.00 0.00 36.92 3.79
596 611 9.461312 TCACCACTTGACTAATTAATAAGCATT 57.539 29.630 0.00 0.00 0.00 3.56
635 650 2.546795 CCATCGCCTCACCACTCTAATC 60.547 54.545 0.00 0.00 0.00 1.75
636 651 2.145397 TCGCCTCACCACTCTAATCT 57.855 50.000 0.00 0.00 0.00 2.40
637 652 3.292492 TCGCCTCACCACTCTAATCTA 57.708 47.619 0.00 0.00 0.00 1.98
638 653 3.628008 TCGCCTCACCACTCTAATCTAA 58.372 45.455 0.00 0.00 0.00 2.10
639 654 3.380637 TCGCCTCACCACTCTAATCTAAC 59.619 47.826 0.00 0.00 0.00 2.34
640 655 3.491104 CGCCTCACCACTCTAATCTAACC 60.491 52.174 0.00 0.00 0.00 2.85
641 656 3.181464 GCCTCACCACTCTAATCTAACCC 60.181 52.174 0.00 0.00 0.00 4.11
669 694 5.656416 TCATCATCTCTACACACCACATGTA 59.344 40.000 0.00 0.00 40.64 2.29
671 696 5.906073 TCATCTCTACACACCACATGTATG 58.094 41.667 0.00 2.55 40.64 2.39
673 698 5.738619 TCTCTACACACCACATGTATGTT 57.261 39.130 11.30 7.07 40.64 2.71
674 699 5.478407 TCTCTACACACCACATGTATGTTG 58.522 41.667 11.30 8.75 40.64 3.33
676 701 5.234752 TCTACACACCACATGTATGTTGTC 58.765 41.667 11.30 0.00 40.64 3.18
677 702 3.814625 ACACACCACATGTATGTTGTCA 58.185 40.909 11.30 0.00 40.64 3.58
678 703 4.397420 ACACACCACATGTATGTTGTCAT 58.603 39.130 11.30 0.00 40.64 3.06
679 704 4.216042 ACACACCACATGTATGTTGTCATG 59.784 41.667 11.30 0.00 40.64 3.07
680 705 3.191162 ACACCACATGTATGTTGTCATGC 59.809 43.478 8.72 0.00 43.34 4.06
681 706 3.441222 CACCACATGTATGTTGTCATGCT 59.559 43.478 0.00 0.00 43.34 3.79
682 707 3.691118 ACCACATGTATGTTGTCATGCTC 59.309 43.478 0.00 0.00 43.34 4.26
683 708 3.690628 CCACATGTATGTTGTCATGCTCA 59.309 43.478 0.00 0.00 43.34 4.26
684 709 4.337274 CCACATGTATGTTGTCATGCTCAT 59.663 41.667 0.00 0.00 43.34 2.90
685 710 5.270853 CACATGTATGTTGTCATGCTCATG 58.729 41.667 0.00 3.55 43.34 3.07
686 711 4.201980 ACATGTATGTTGTCATGCTCATGC 60.202 41.667 0.00 2.05 43.34 4.06
687 712 6.607442 ACATGTATGTTGTCATGCTCATGCA 61.607 40.000 0.00 0.00 45.91 3.96
688 713 8.329637 ACATGTATGTTGTCATGCTCATGCAG 62.330 42.308 0.00 0.00 45.37 4.41
701 726 3.004106 GCTCATGCAGGGTATTTGATCAC 59.996 47.826 0.00 0.00 39.41 3.06
702 727 3.554934 TCATGCAGGGTATTTGATCACC 58.445 45.455 0.00 0.00 0.00 4.02
703 728 3.053768 TCATGCAGGGTATTTGATCACCA 60.054 43.478 0.00 0.00 36.48 4.17
704 729 3.003394 TGCAGGGTATTTGATCACCAG 57.997 47.619 0.00 0.00 36.48 4.00
705 730 1.678101 GCAGGGTATTTGATCACCAGC 59.322 52.381 0.00 0.00 36.48 4.85
706 731 2.684927 GCAGGGTATTTGATCACCAGCT 60.685 50.000 8.80 0.00 36.48 4.24
707 732 3.433598 GCAGGGTATTTGATCACCAGCTA 60.434 47.826 8.80 0.00 36.48 3.32
708 733 4.384056 CAGGGTATTTGATCACCAGCTAG 58.616 47.826 0.00 0.00 36.48 3.42
709 734 3.142174 GGGTATTTGATCACCAGCTAGC 58.858 50.000 6.62 6.62 36.48 3.42
710 735 3.181450 GGGTATTTGATCACCAGCTAGCT 60.181 47.826 12.68 12.68 36.48 3.32
711 736 4.040461 GGGTATTTGATCACCAGCTAGCTA 59.960 45.833 18.86 1.28 36.48 3.32
712 737 5.233988 GGTATTTGATCACCAGCTAGCTAG 58.766 45.833 18.86 16.84 34.77 3.42
713 738 5.011125 GGTATTTGATCACCAGCTAGCTAGA 59.989 44.000 25.15 15.84 34.77 2.43
714 739 5.822132 ATTTGATCACCAGCTAGCTAGAT 57.178 39.130 25.15 19.73 0.00 1.98
715 740 4.862902 TTGATCACCAGCTAGCTAGATC 57.137 45.455 29.15 29.15 33.03 2.75
716 741 3.837355 TGATCACCAGCTAGCTAGATCA 58.163 45.455 31.92 31.92 36.55 2.92
717 742 4.414677 TGATCACCAGCTAGCTAGATCAT 58.585 43.478 31.92 18.06 35.31 2.45
718 743 5.574188 TGATCACCAGCTAGCTAGATCATA 58.426 41.667 31.92 20.85 35.31 2.15
719 744 6.193504 TGATCACCAGCTAGCTAGATCATAT 58.806 40.000 31.92 17.07 35.31 1.78
720 745 6.320926 TGATCACCAGCTAGCTAGATCATATC 59.679 42.308 31.92 22.07 35.31 1.63
721 746 5.574188 TCACCAGCTAGCTAGATCATATCA 58.426 41.667 25.15 0.00 0.00 2.15
722 747 5.417266 TCACCAGCTAGCTAGATCATATCAC 59.583 44.000 25.15 3.08 0.00 3.06
723 748 4.709397 ACCAGCTAGCTAGATCATATCACC 59.291 45.833 25.15 2.33 0.00 4.02
724 749 4.708909 CCAGCTAGCTAGATCATATCACCA 59.291 45.833 25.15 0.00 0.00 4.17
725 750 5.163530 CCAGCTAGCTAGATCATATCACCAG 60.164 48.000 25.15 1.88 0.00 4.00
726 751 4.402155 AGCTAGCTAGATCATATCACCAGC 59.598 45.833 25.15 6.08 33.63 4.85
727 752 4.402155 GCTAGCTAGATCATATCACCAGCT 59.598 45.833 25.15 12.37 41.21 4.24
728 753 5.592282 GCTAGCTAGATCATATCACCAGCTA 59.408 44.000 25.15 12.98 39.89 3.32
729 754 7.263100 CTAGCTAGATCATATCACCAGCTAG 57.737 44.000 16.15 19.51 44.92 3.42
730 755 4.402155 AGCTAGATCATATCACCAGCTAGC 59.598 45.833 6.62 6.62 45.79 3.42
731 756 4.402155 GCTAGATCATATCACCAGCTAGCT 59.598 45.833 12.68 12.68 43.48 3.32
732 757 5.592282 GCTAGATCATATCACCAGCTAGCTA 59.408 44.000 18.86 1.28 43.48 3.32
733 758 5.913137 AGATCATATCACCAGCTAGCTAC 57.087 43.478 18.86 0.00 0.00 3.58
734 759 5.579047 AGATCATATCACCAGCTAGCTACT 58.421 41.667 18.86 1.70 0.00 2.57
735 760 5.652014 AGATCATATCACCAGCTAGCTACTC 59.348 44.000 18.86 2.56 0.00 2.59
736 761 4.082845 TCATATCACCAGCTAGCTACTCC 58.917 47.826 18.86 0.00 0.00 3.85
737 762 1.710816 ATCACCAGCTAGCTACTCCC 58.289 55.000 18.86 0.00 0.00 4.30
738 763 0.631753 TCACCAGCTAGCTACTCCCT 59.368 55.000 18.86 0.00 0.00 4.20
739 764 1.036707 CACCAGCTAGCTACTCCCTC 58.963 60.000 18.86 0.00 0.00 4.30
740 765 0.105913 ACCAGCTAGCTACTCCCTCC 60.106 60.000 18.86 0.00 0.00 4.30
741 766 1.175983 CCAGCTAGCTACTCCCTCCG 61.176 65.000 18.86 1.03 0.00 4.63
742 767 0.466555 CAGCTAGCTACTCCCTCCGT 60.467 60.000 18.86 0.00 0.00 4.69
743 768 0.259356 AGCTAGCTACTCCCTCCGTT 59.741 55.000 17.69 0.00 0.00 4.44
744 769 1.112950 GCTAGCTACTCCCTCCGTTT 58.887 55.000 7.70 0.00 0.00 3.60
745 770 1.481363 GCTAGCTACTCCCTCCGTTTT 59.519 52.381 7.70 0.00 0.00 2.43
746 771 2.093606 GCTAGCTACTCCCTCCGTTTTT 60.094 50.000 7.70 0.00 0.00 1.94
747 772 3.131755 GCTAGCTACTCCCTCCGTTTTTA 59.868 47.826 7.70 0.00 0.00 1.52
748 773 4.382362 GCTAGCTACTCCCTCCGTTTTTAA 60.382 45.833 7.70 0.00 0.00 1.52
749 774 4.628963 AGCTACTCCCTCCGTTTTTAAA 57.371 40.909 0.00 0.00 0.00 1.52
750 775 5.175388 AGCTACTCCCTCCGTTTTTAAAT 57.825 39.130 0.00 0.00 0.00 1.40
751 776 6.303903 AGCTACTCCCTCCGTTTTTAAATA 57.696 37.500 0.00 0.00 0.00 1.40
752 777 6.896883 AGCTACTCCCTCCGTTTTTAAATAT 58.103 36.000 0.00 0.00 0.00 1.28
753 778 7.344134 AGCTACTCCCTCCGTTTTTAAATATT 58.656 34.615 0.00 0.00 0.00 1.28
754 779 7.832685 AGCTACTCCCTCCGTTTTTAAATATTT 59.167 33.333 5.89 5.89 0.00 1.40
755 780 7.913821 GCTACTCCCTCCGTTTTTAAATATTTG 59.086 37.037 11.05 0.00 0.00 2.32
756 781 7.770366 ACTCCCTCCGTTTTTAAATATTTGT 57.230 32.000 11.05 0.00 0.00 2.83
757 782 7.823665 ACTCCCTCCGTTTTTAAATATTTGTC 58.176 34.615 11.05 0.00 0.00 3.18
758 783 7.668469 ACTCCCTCCGTTTTTAAATATTTGTCT 59.332 33.333 11.05 0.00 0.00 3.41
759 784 8.411991 TCCCTCCGTTTTTAAATATTTGTCTT 57.588 30.769 11.05 0.00 0.00 3.01
760 785 8.862085 TCCCTCCGTTTTTAAATATTTGTCTTT 58.138 29.630 11.05 0.00 0.00 2.52
761 786 9.135843 CCCTCCGTTTTTAAATATTTGTCTTTC 57.864 33.333 11.05 0.00 0.00 2.62
762 787 9.908152 CCTCCGTTTTTAAATATTTGTCTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
790 815 9.864034 GACATTTCAAATGACTATTACATACGG 57.136 33.333 17.30 0.00 0.00 4.02
791 816 9.607988 ACATTTCAAATGACTATTACATACGGA 57.392 29.630 17.30 0.00 0.00 4.69
836 861 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
837 862 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
838 863 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
839 864 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
840 865 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
841 866 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
842 867 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
843 868 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
844 869 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
845 870 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
846 871 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
847 872 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
848 873 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
849 874 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
850 875 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
851 876 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
852 877 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
853 878 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
854 879 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
855 880 6.448852 TGCTTCGTATGTAGTCACTTGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
856 881 6.924612 TGCTTCGTATGTAGTCACTTGTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
857 882 7.438757 TGCTTCGTATGTAGTCACTTGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
858 883 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
859 884 9.741168 CTTCGTATGTAGTCACTTGTTAAAATG 57.259 33.333 0.00 0.00 0.00 2.32
860 885 7.735500 TCGTATGTAGTCACTTGTTAAAATGC 58.264 34.615 0.00 0.00 0.00 3.56
861 886 6.959311 CGTATGTAGTCACTTGTTAAAATGCC 59.041 38.462 0.00 0.00 0.00 4.40
862 887 7.148474 CGTATGTAGTCACTTGTTAAAATGCCT 60.148 37.037 0.00 0.00 0.00 4.75
863 888 9.158233 GTATGTAGTCACTTGTTAAAATGCCTA 57.842 33.333 0.00 0.00 0.00 3.93
864 889 8.630054 ATGTAGTCACTTGTTAAAATGCCTAA 57.370 30.769 0.00 0.00 0.00 2.69
865 890 8.453238 TGTAGTCACTTGTTAAAATGCCTAAA 57.547 30.769 0.00 0.00 0.00 1.85
866 891 8.904834 TGTAGTCACTTGTTAAAATGCCTAAAA 58.095 29.630 0.00 0.00 0.00 1.52
867 892 9.738832 GTAGTCACTTGTTAAAATGCCTAAAAA 57.261 29.630 0.00 0.00 0.00 1.94
868 893 8.871686 AGTCACTTGTTAAAATGCCTAAAAAG 57.128 30.769 0.00 0.00 32.14 2.27
869 894 8.691797 AGTCACTTGTTAAAATGCCTAAAAAGA 58.308 29.630 0.62 0.00 30.93 2.52
870 895 8.752254 GTCACTTGTTAAAATGCCTAAAAAGAC 58.248 33.333 0.62 0.00 30.93 3.01
871 896 8.470805 TCACTTGTTAAAATGCCTAAAAAGACA 58.529 29.630 0.62 0.00 30.93 3.41
872 897 9.092876 CACTTGTTAAAATGCCTAAAAAGACAA 57.907 29.630 0.62 0.00 30.93 3.18
873 898 9.313118 ACTTGTTAAAATGCCTAAAAAGACAAG 57.687 29.630 0.00 0.00 43.36 3.16
874 899 9.313118 CTTGTTAAAATGCCTAAAAAGACAAGT 57.687 29.630 0.00 0.00 36.91 3.16
887 912 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
888 913 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
889 914 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
890 915 5.021458 AGACAAGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
891 916 5.482878 AGACAAGTATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
892 917 5.731591 ACAAGTATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
893 918 5.247792 ACAAGTATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
894 919 6.438425 ACAAGTATTTAGGAACGGAGGAAGTA 59.562 38.462 0.00 0.00 0.00 2.24
895 920 6.712179 AGTATTTAGGAACGGAGGAAGTAG 57.288 41.667 0.00 0.00 0.00 2.57
896 921 6.430007 AGTATTTAGGAACGGAGGAAGTAGA 58.570 40.000 0.00 0.00 0.00 2.59
897 922 7.068061 AGTATTTAGGAACGGAGGAAGTAGAT 58.932 38.462 0.00 0.00 0.00 1.98
898 923 5.848833 TTTAGGAACGGAGGAAGTAGATC 57.151 43.478 0.00 0.00 0.00 2.75
899 924 3.383698 AGGAACGGAGGAAGTAGATCA 57.616 47.619 0.00 0.00 0.00 2.92
900 925 3.025262 AGGAACGGAGGAAGTAGATCAC 58.975 50.000 0.00 0.00 0.00 3.06
901 926 2.758979 GGAACGGAGGAAGTAGATCACA 59.241 50.000 0.00 0.00 0.00 3.58
902 927 3.194968 GGAACGGAGGAAGTAGATCACAA 59.805 47.826 0.00 0.00 0.00 3.33
903 928 4.425520 GAACGGAGGAAGTAGATCACAAG 58.574 47.826 0.00 0.00 0.00 3.16
904 929 2.761208 ACGGAGGAAGTAGATCACAAGG 59.239 50.000 0.00 0.00 0.00 3.61
905 930 3.024547 CGGAGGAAGTAGATCACAAGGA 58.975 50.000 0.00 0.00 0.00 3.36
906 931 3.639094 CGGAGGAAGTAGATCACAAGGAT 59.361 47.826 0.00 0.00 39.53 3.24
907 932 4.827835 CGGAGGAAGTAGATCACAAGGATA 59.172 45.833 0.00 0.00 36.00 2.59
908 933 5.048364 CGGAGGAAGTAGATCACAAGGATAG 60.048 48.000 0.00 0.00 36.00 2.08
909 934 5.279256 GGAGGAAGTAGATCACAAGGATAGC 60.279 48.000 0.00 0.00 36.00 2.97
910 935 5.463154 AGGAAGTAGATCACAAGGATAGCT 58.537 41.667 0.00 0.00 36.00 3.32
911 936 6.615617 AGGAAGTAGATCACAAGGATAGCTA 58.384 40.000 0.00 0.00 36.00 3.32
912 937 6.719370 AGGAAGTAGATCACAAGGATAGCTAG 59.281 42.308 0.00 0.00 36.00 3.42
913 938 5.975693 AGTAGATCACAAGGATAGCTAGC 57.024 43.478 6.62 6.62 36.00 3.42
914 939 5.389520 AGTAGATCACAAGGATAGCTAGCA 58.610 41.667 18.83 3.19 36.00 3.49
915 940 4.870123 AGATCACAAGGATAGCTAGCAG 57.130 45.455 18.83 2.64 36.00 4.24
916 941 3.577848 AGATCACAAGGATAGCTAGCAGG 59.422 47.826 18.83 1.87 36.00 4.85
917 942 2.042464 TCACAAGGATAGCTAGCAGGG 58.958 52.381 18.83 1.26 0.00 4.45
918 943 1.765314 CACAAGGATAGCTAGCAGGGT 59.235 52.381 18.83 2.16 0.00 4.34
919 944 2.965831 CACAAGGATAGCTAGCAGGGTA 59.034 50.000 18.83 0.00 0.00 3.69
920 945 3.580458 CACAAGGATAGCTAGCAGGGTAT 59.420 47.826 18.83 5.67 33.33 2.73
921 946 4.040952 CACAAGGATAGCTAGCAGGGTATT 59.959 45.833 18.83 1.34 31.19 1.89
922 947 4.660771 ACAAGGATAGCTAGCAGGGTATTT 59.339 41.667 18.83 0.00 31.19 1.40
943 968 6.661304 TTTGATCAGATCAGATAGCTAGCA 57.339 37.500 18.83 3.19 40.94 3.49
945 970 4.158209 TGATCAGATCAGATAGCTAGCAGC 59.842 45.833 18.83 5.90 36.44 5.25
946 971 2.824936 TCAGATCAGATAGCTAGCAGCC 59.175 50.000 18.83 4.80 43.77 4.85
949 974 4.096833 CAGATCAGATAGCTAGCAGCCTAG 59.903 50.000 18.83 2.08 43.77 3.02
1013 1038 2.695666 CCTAGTCAATGTCCTCATCCGT 59.304 50.000 0.00 0.00 32.56 4.69
1015 1040 1.208052 AGTCAATGTCCTCATCCGTGG 59.792 52.381 0.00 0.00 32.56 4.94
1218 1255 3.117452 GCAGATGCTCCCCTCCCTG 62.117 68.421 0.00 0.00 38.21 4.45
1266 1303 2.248487 GTCTTCTACTACGCCAACACG 58.752 52.381 0.00 0.00 39.50 4.49
1352 1389 3.003763 GGTCAAGGCCCTCGACCT 61.004 66.667 22.62 0.00 44.82 3.85
1372 1409 3.530398 GAGATCCTCGTCGCGCTCC 62.530 68.421 5.56 0.00 0.00 4.70
1392 1429 4.394712 GTCGTGGCCCTCCTGGTG 62.395 72.222 0.00 0.00 36.04 4.17
1491 1528 2.261361 CTGGTCGCCATGTCGTCA 59.739 61.111 0.00 0.00 30.82 4.35
1539 1576 6.183360 GGGATGAACTCTGAAATCTGAATTGG 60.183 42.308 0.00 0.00 0.00 3.16
1550 1587 6.208599 TGAAATCTGAATTGGTTTAGTCACCC 59.791 38.462 0.00 0.00 35.73 4.61
1580 1617 5.220835 CGATGCTAGAGCTAGATCGATCAAT 60.221 44.000 26.47 10.14 40.88 2.57
1581 1618 5.307926 TGCTAGAGCTAGATCGATCAATG 57.692 43.478 26.47 16.07 42.66 2.82
1582 1619 5.006386 TGCTAGAGCTAGATCGATCAATGA 58.994 41.667 26.47 8.43 42.66 2.57
1583 1620 5.651576 TGCTAGAGCTAGATCGATCAATGAT 59.348 40.000 26.47 14.35 42.66 2.45
1584 1621 6.152492 TGCTAGAGCTAGATCGATCAATGATT 59.848 38.462 26.47 7.94 42.66 2.57
1620 1819 6.765989 TGTACTACACTTGCTCTGTTTTCATT 59.234 34.615 0.00 0.00 0.00 2.57
1621 1820 6.064846 ACTACACTTGCTCTGTTTTCATTG 57.935 37.500 0.00 0.00 0.00 2.82
1622 1821 4.311816 ACACTTGCTCTGTTTTCATTGG 57.688 40.909 0.00 0.00 0.00 3.16
1623 1822 3.054878 CACTTGCTCTGTTTTCATTGGC 58.945 45.455 0.00 0.00 0.00 4.52
1624 1823 2.036346 ACTTGCTCTGTTTTCATTGGCC 59.964 45.455 0.00 0.00 0.00 5.36
1625 1824 0.968405 TGCTCTGTTTTCATTGGCCC 59.032 50.000 0.00 0.00 0.00 5.80
1626 1825 0.968405 GCTCTGTTTTCATTGGCCCA 59.032 50.000 0.00 0.00 0.00 5.36
1627 1826 1.337167 GCTCTGTTTTCATTGGCCCAC 60.337 52.381 0.00 0.00 0.00 4.61
1628 1827 2.242043 CTCTGTTTTCATTGGCCCACT 58.758 47.619 0.00 0.00 0.00 4.00
1629 1828 3.420893 CTCTGTTTTCATTGGCCCACTA 58.579 45.455 0.00 0.00 0.00 2.74
1631 1830 5.186256 TCTGTTTTCATTGGCCCACTATA 57.814 39.130 0.00 0.00 0.00 1.31
1632 1831 4.947388 TCTGTTTTCATTGGCCCACTATAC 59.053 41.667 0.00 0.00 0.00 1.47
1633 1832 4.667573 TGTTTTCATTGGCCCACTATACA 58.332 39.130 0.00 0.00 0.00 2.29
1634 1833 5.080337 TGTTTTCATTGGCCCACTATACAA 58.920 37.500 0.00 0.00 0.00 2.41
1635 1834 5.540337 TGTTTTCATTGGCCCACTATACAAA 59.460 36.000 0.00 0.00 0.00 2.83
1636 1835 6.212388 TGTTTTCATTGGCCCACTATACAAAT 59.788 34.615 0.00 0.00 0.00 2.32
1638 1837 5.387113 TCATTGGCCCACTATACAAATCT 57.613 39.130 0.00 0.00 0.00 2.40
1639 1838 5.132502 TCATTGGCCCACTATACAAATCTG 58.867 41.667 0.00 0.00 0.00 2.90
1640 1839 4.853468 TTGGCCCACTATACAAATCTGA 57.147 40.909 0.00 0.00 0.00 3.27
1641 1840 4.853468 TGGCCCACTATACAAATCTGAA 57.147 40.909 0.00 0.00 0.00 3.02
1642 1841 5.387113 TGGCCCACTATACAAATCTGAAT 57.613 39.130 0.00 0.00 0.00 2.57
1643 1842 5.765510 TGGCCCACTATACAAATCTGAATT 58.234 37.500 0.00 0.00 0.00 2.17
1644 1843 6.194235 TGGCCCACTATACAAATCTGAATTT 58.806 36.000 0.00 0.00 35.43 1.82
1662 1931 7.104326 TGAATTTGTCTTATTTGCTTTTCGC 57.896 32.000 0.00 0.00 39.77 4.70
1698 2102 4.494484 GCCCGAAAAGCAAATAAGACAAT 58.506 39.130 0.00 0.00 0.00 2.71
1738 2142 2.252714 ACACTTGGGTTCTCTCTCCTC 58.747 52.381 0.00 0.00 0.00 3.71
1740 2144 1.435168 ACTTGGGTTCTCTCTCCTCCT 59.565 52.381 0.00 0.00 0.00 3.69
1751 2155 1.557371 CTCTCCTCCTCTTTTCCCACC 59.443 57.143 0.00 0.00 0.00 4.61
1753 2157 0.473117 TCCTCCTCTTTTCCCACCGT 60.473 55.000 0.00 0.00 0.00 4.83
1754 2158 0.321653 CCTCCTCTTTTCCCACCGTG 60.322 60.000 0.00 0.00 0.00 4.94
1755 2159 0.955919 CTCCTCTTTTCCCACCGTGC 60.956 60.000 0.00 0.00 0.00 5.34
1756 2160 1.228124 CCTCTTTTCCCACCGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
1757 2161 1.515521 CCTCTTTTCCCACCGTGCAC 61.516 60.000 6.82 6.82 0.00 4.57
1763 2167 3.669344 CCCACCGTGCACGCAATT 61.669 61.111 33.17 13.96 38.18 2.32
1767 2171 2.038269 ACCGTGCACGCAATTAGGG 61.038 57.895 33.17 18.85 38.18 3.53
1790 2194 4.308458 CGTCGTTCCCCACTGCCA 62.308 66.667 0.00 0.00 0.00 4.92
1793 2197 3.353836 CGTTCCCCACTGCCAACG 61.354 66.667 0.00 0.00 36.05 4.10
1794 2198 2.112297 GTTCCCCACTGCCAACGA 59.888 61.111 0.00 0.00 0.00 3.85
1795 2199 1.303317 GTTCCCCACTGCCAACGAT 60.303 57.895 0.00 0.00 0.00 3.73
1796 2200 1.303236 TTCCCCACTGCCAACGATG 60.303 57.895 0.00 0.00 0.00 3.84
1797 2201 2.034066 CCCCACTGCCAACGATGT 59.966 61.111 0.00 0.00 0.00 3.06
1799 2203 1.024579 CCCCACTGCCAACGATGTAC 61.025 60.000 0.00 0.00 0.00 2.90
1800 2204 0.036388 CCCACTGCCAACGATGTACT 60.036 55.000 0.00 0.00 0.00 2.73
1801 2205 1.206132 CCCACTGCCAACGATGTACTA 59.794 52.381 0.00 0.00 0.00 1.82
1802 2206 2.158957 CCCACTGCCAACGATGTACTAT 60.159 50.000 0.00 0.00 0.00 2.12
1814 2218 7.762615 CCAACGATGTACTATAGTTTTTCCTCA 59.237 37.037 11.40 0.91 0.00 3.86
1880 2285 4.506095 GGGTTTGTAGGGTATGTCAACACT 60.506 45.833 0.00 0.00 36.88 3.55
1920 2325 2.676748 TGGTTTCCTCTGCAATTTGGT 58.323 42.857 0.00 0.00 0.00 3.67
1921 2326 3.838565 TGGTTTCCTCTGCAATTTGGTA 58.161 40.909 0.00 0.00 0.00 3.25
1925 2330 3.350219 TCCTCTGCAATTTGGTACTCC 57.650 47.619 0.00 0.00 0.00 3.85
1934 2339 3.567478 ATTTGGTACTCCAGCCTCATC 57.433 47.619 0.00 0.00 45.22 2.92
2001 2406 3.181461 CCCTTACTTAGGTGCTCATGAGG 60.181 52.174 23.89 7.99 43.07 3.86
2056 2461 1.674817 CCTCGCTACGTGAATTTGGGT 60.675 52.381 0.00 0.00 0.00 4.51
2059 2473 3.661944 TCGCTACGTGAATTTGGGTTAA 58.338 40.909 0.00 0.00 0.00 2.01
2067 2481 3.056821 GTGAATTTGGGTTAAGTCAGGCC 60.057 47.826 0.00 0.00 33.35 5.19
2092 2506 2.031120 CTTCCAGTTTTGGCAAGGTCA 58.969 47.619 0.00 0.00 44.63 4.02
2097 2511 4.570597 CCAGTTTTGGCAAGGTCATTCCT 61.571 47.826 0.00 0.00 42.64 3.36
2201 2623 7.274033 TGCGAACATCTTTCAAATTCATGAATC 59.726 33.333 20.95 4.31 38.98 2.52
2203 2626 9.992910 CGAACATCTTTCAAATTCATGAATCTA 57.007 29.630 20.95 7.24 38.98 1.98
2342 2780 6.588719 ATCCTGAACATTTTTCCGAATTCA 57.411 33.333 6.22 0.00 0.00 2.57
2361 2799 9.521503 CGAATTCATGAAGAGTGTCTTAGATAA 57.478 33.333 14.54 0.00 36.73 1.75
2501 2941 8.447833 TGCGAATATTTTTCGAATTAGTGAACT 58.552 29.630 12.51 0.00 43.97 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.775053 AAGACCTTTTCAAATACATGGCTAA 57.225 32.000 0.00 0.00 0.00 3.09
1 2 7.775053 AAAGACCTTTTCAAATACATGGCTA 57.225 32.000 0.00 0.00 0.00 3.93
2 3 6.670695 AAAGACCTTTTCAAATACATGGCT 57.329 33.333 0.00 0.00 0.00 4.75
3 4 8.303876 TCTAAAAGACCTTTTCAAATACATGGC 58.696 33.333 10.63 0.00 41.39 4.40
10 11 9.860898 GCATACATCTAAAAGACCTTTTCAAAT 57.139 29.630 10.63 2.28 41.39 2.32
11 12 8.855110 TGCATACATCTAAAAGACCTTTTCAAA 58.145 29.630 10.63 0.23 41.39 2.69
12 13 8.402798 TGCATACATCTAAAAGACCTTTTCAA 57.597 30.769 10.63 2.38 41.39 2.69
13 14 7.994425 TGCATACATCTAAAAGACCTTTTCA 57.006 32.000 10.63 1.17 41.39 2.69
14 15 9.691362 TTTTGCATACATCTAAAAGACCTTTTC 57.309 29.630 10.63 0.00 41.39 2.29
90 91 9.558396 ACATTTTTCAAATACATGACCAACATT 57.442 25.926 0.00 0.00 37.07 2.71
91 92 9.558396 AACATTTTTCAAATACATGACCAACAT 57.442 25.926 0.00 0.00 40.17 2.71
92 93 8.954950 AACATTTTTCAAATACATGACCAACA 57.045 26.923 0.00 0.00 0.00 3.33
116 117 9.680315 CCAGGAACATTTTAAATACACGTTTAA 57.320 29.630 0.00 0.00 33.13 1.52
117 118 8.848182 ACCAGGAACATTTTAAATACACGTTTA 58.152 29.630 0.00 0.00 0.00 2.01
118 119 7.650104 CACCAGGAACATTTTAAATACACGTTT 59.350 33.333 0.00 0.00 0.00 3.60
119 120 7.142680 CACCAGGAACATTTTAAATACACGTT 58.857 34.615 0.00 0.00 0.00 3.99
120 121 6.263617 ACACCAGGAACATTTTAAATACACGT 59.736 34.615 0.00 0.00 0.00 4.49
121 122 6.674066 ACACCAGGAACATTTTAAATACACG 58.326 36.000 0.00 0.00 0.00 4.49
129 130 9.521841 TGTTTCATATACACCAGGAACATTTTA 57.478 29.630 0.00 0.00 0.00 1.52
130 131 8.303876 GTGTTTCATATACACCAGGAACATTTT 58.696 33.333 0.00 0.00 39.93 1.82
131 132 7.450014 TGTGTTTCATATACACCAGGAACATTT 59.550 33.333 0.00 0.00 44.05 2.32
132 133 6.945435 TGTGTTTCATATACACCAGGAACATT 59.055 34.615 0.00 0.00 44.05 2.71
133 134 6.480763 TGTGTTTCATATACACCAGGAACAT 58.519 36.000 0.00 0.00 44.05 2.71
134 135 5.870706 TGTGTTTCATATACACCAGGAACA 58.129 37.500 0.00 0.00 44.05 3.18
135 136 7.551262 TGTATGTGTTTCATATACACCAGGAAC 59.449 37.037 12.74 0.00 41.22 3.62
136 137 7.625469 TGTATGTGTTTCATATACACCAGGAA 58.375 34.615 12.74 0.00 41.22 3.36
137 138 7.189079 TGTATGTGTTTCATATACACCAGGA 57.811 36.000 12.74 0.00 41.22 3.86
138 139 7.857734 TTGTATGTGTTTCATATACACCAGG 57.142 36.000 15.21 0.00 44.04 4.45
139 140 8.892723 ACATTGTATGTGTTTCATATACACCAG 58.107 33.333 15.21 11.59 44.04 4.00
140 141 8.800370 ACATTGTATGTGTTTCATATACACCA 57.200 30.769 15.21 6.30 44.04 4.17
188 189 7.826260 TGTCCATTCTTTTTCTTTTCAACAC 57.174 32.000 0.00 0.00 0.00 3.32
223 230 2.693074 TGGCTTTCACCAGTTTTCCTTC 59.307 45.455 0.00 0.00 33.75 3.46
226 233 3.194861 GTTTGGCTTTCACCAGTTTTCC 58.805 45.455 0.00 0.00 41.82 3.13
233 240 1.895798 TGTTGTGTTTGGCTTTCACCA 59.104 42.857 0.00 0.00 38.16 4.17
234 241 2.663826 TGTTGTGTTTGGCTTTCACC 57.336 45.000 0.00 0.00 0.00 4.02
235 242 5.121454 TGAAATTGTTGTGTTTGGCTTTCAC 59.879 36.000 0.00 0.00 0.00 3.18
236 243 5.240891 TGAAATTGTTGTGTTTGGCTTTCA 58.759 33.333 0.00 0.00 0.00 2.69
259 268 6.128172 CGCCTCAGTAATTTTCTTCTTGTCAT 60.128 38.462 0.00 0.00 0.00 3.06
260 269 5.179368 CGCCTCAGTAATTTTCTTCTTGTCA 59.821 40.000 0.00 0.00 0.00 3.58
263 272 5.862924 TCGCCTCAGTAATTTTCTTCTTG 57.137 39.130 0.00 0.00 0.00 3.02
266 275 9.788960 AATAAATTCGCCTCAGTAATTTTCTTC 57.211 29.630 0.00 0.00 35.20 2.87
272 281 8.396272 AGCATAATAAATTCGCCTCAGTAATT 57.604 30.769 0.00 0.00 0.00 1.40
273 282 7.986085 AGCATAATAAATTCGCCTCAGTAAT 57.014 32.000 0.00 0.00 0.00 1.89
274 283 7.497579 TCAAGCATAATAAATTCGCCTCAGTAA 59.502 33.333 0.00 0.00 0.00 2.24
275 284 6.989759 TCAAGCATAATAAATTCGCCTCAGTA 59.010 34.615 0.00 0.00 0.00 2.74
384 393 1.898472 TCTCTTGAGCTAGCTGTGCTT 59.102 47.619 24.99 0.00 41.30 3.91
385 394 1.554836 TCTCTTGAGCTAGCTGTGCT 58.445 50.000 24.99 14.55 44.24 4.40
421 436 2.087009 GCGTAGGTGCGTGACTCAC 61.087 63.158 0.00 0.00 0.00 3.51
422 437 2.257371 GCGTAGGTGCGTGACTCA 59.743 61.111 0.00 0.00 0.00 3.41
423 438 2.087009 GTGCGTAGGTGCGTGACTC 61.087 63.158 0.00 0.00 37.81 3.36
424 439 2.049433 GTGCGTAGGTGCGTGACT 60.049 61.111 0.00 0.00 37.81 3.41
425 440 3.467119 CGTGCGTAGGTGCGTGAC 61.467 66.667 0.00 0.00 37.81 3.67
426 441 4.710695 CCGTGCGTAGGTGCGTGA 62.711 66.667 0.00 0.00 37.81 4.35
428 443 3.795499 AAACCGTGCGTAGGTGCGT 62.795 57.895 0.00 0.00 41.95 5.24
429 444 3.039588 AAACCGTGCGTAGGTGCG 61.040 61.111 0.00 0.00 41.95 5.34
430 445 2.554272 CAAACCGTGCGTAGGTGC 59.446 61.111 0.00 0.00 41.95 5.01
431 446 2.554272 GCAAACCGTGCGTAGGTG 59.446 61.111 0.00 0.00 45.10 4.00
468 483 7.568199 AATTATAACAAGCAAGCTTACCGAT 57.432 32.000 7.03 2.17 34.50 4.18
470 485 8.138365 TCTAATTATAACAAGCAAGCTTACCG 57.862 34.615 7.03 0.00 34.50 4.02
471 486 9.110502 ACTCTAATTATAACAAGCAAGCTTACC 57.889 33.333 7.03 0.00 34.50 2.85
474 489 8.831550 GCTACTCTAATTATAACAAGCAAGCTT 58.168 33.333 0.59 0.59 36.60 3.74
475 490 8.207545 AGCTACTCTAATTATAACAAGCAAGCT 58.792 33.333 0.00 0.00 0.00 3.74
476 491 8.371770 AGCTACTCTAATTATAACAAGCAAGC 57.628 34.615 0.00 0.00 0.00 4.01
478 493 9.459640 CGTAGCTACTCTAATTATAACAAGCAA 57.540 33.333 21.20 0.00 0.00 3.91
479 494 8.627403 ACGTAGCTACTCTAATTATAACAAGCA 58.373 33.333 21.20 0.00 0.00 3.91
494 509 4.036498 TCATCAAAGCCTACGTAGCTACTC 59.964 45.833 21.20 5.74 40.49 2.59
496 511 4.303086 TCATCAAAGCCTACGTAGCTAC 57.697 45.455 17.41 14.19 40.49 3.58
498 513 4.021894 CCTATCATCAAAGCCTACGTAGCT 60.022 45.833 17.41 14.33 44.19 3.32
499 514 4.238514 CCTATCATCAAAGCCTACGTAGC 58.761 47.826 17.41 12.32 0.00 3.58
500 515 5.455056 ACCTATCATCAAAGCCTACGTAG 57.545 43.478 15.92 15.92 0.00 3.51
501 516 6.015688 CCTTACCTATCATCAAAGCCTACGTA 60.016 42.308 0.00 0.00 0.00 3.57
502 517 5.221461 CCTTACCTATCATCAAAGCCTACGT 60.221 44.000 0.00 0.00 0.00 3.57
503 518 5.010719 TCCTTACCTATCATCAAAGCCTACG 59.989 44.000 0.00 0.00 0.00 3.51
504 519 6.420913 TCCTTACCTATCATCAAAGCCTAC 57.579 41.667 0.00 0.00 0.00 3.18
505 520 6.520742 GCATCCTTACCTATCATCAAAGCCTA 60.521 42.308 0.00 0.00 0.00 3.93
506 521 5.747248 GCATCCTTACCTATCATCAAAGCCT 60.747 44.000 0.00 0.00 0.00 4.58
507 522 4.457257 GCATCCTTACCTATCATCAAAGCC 59.543 45.833 0.00 0.00 0.00 4.35
512 527 6.840527 TGAATTGCATCCTTACCTATCATCA 58.159 36.000 0.00 0.00 0.00 3.07
531 546 6.229936 AGATTGTTTAGCCATGCATGAATT 57.770 33.333 28.31 14.43 0.00 2.17
532 547 5.864418 AGATTGTTTAGCCATGCATGAAT 57.136 34.783 28.31 16.59 0.00 2.57
533 548 6.772360 TTAGATTGTTTAGCCATGCATGAA 57.228 33.333 28.31 11.68 0.00 2.57
534 549 6.774170 AGATTAGATTGTTTAGCCATGCATGA 59.226 34.615 28.31 5.25 0.00 3.07
535 550 6.978338 AGATTAGATTGTTTAGCCATGCATG 58.022 36.000 20.19 20.19 0.00 4.06
536 551 7.504911 AGAAGATTAGATTGTTTAGCCATGCAT 59.495 33.333 0.00 0.00 0.00 3.96
537 552 6.830324 AGAAGATTAGATTGTTTAGCCATGCA 59.170 34.615 0.00 0.00 0.00 3.96
538 553 7.269477 AGAAGATTAGATTGTTTAGCCATGC 57.731 36.000 0.00 0.00 0.00 4.06
539 554 8.680903 ACAAGAAGATTAGATTGTTTAGCCATG 58.319 33.333 0.00 0.00 32.10 3.66
540 555 8.680903 CACAAGAAGATTAGATTGTTTAGCCAT 58.319 33.333 0.00 0.00 33.76 4.40
541 556 7.121168 CCACAAGAAGATTAGATTGTTTAGCCA 59.879 37.037 0.00 0.00 33.76 4.75
542 557 7.475840 CCACAAGAAGATTAGATTGTTTAGCC 58.524 38.462 0.00 0.00 33.76 3.93
543 558 6.969473 GCCACAAGAAGATTAGATTGTTTAGC 59.031 38.462 0.00 0.00 33.76 3.09
587 602 9.182214 ACAAGTGATCATACAGAAATGCTTATT 57.818 29.630 0.00 0.00 0.00 1.40
588 603 8.743085 ACAAGTGATCATACAGAAATGCTTAT 57.257 30.769 0.00 0.00 0.00 1.73
590 605 6.094603 GGACAAGTGATCATACAGAAATGCTT 59.905 38.462 0.00 0.00 0.00 3.91
591 606 5.587844 GGACAAGTGATCATACAGAAATGCT 59.412 40.000 0.00 0.00 0.00 3.79
592 607 5.355071 TGGACAAGTGATCATACAGAAATGC 59.645 40.000 0.00 0.00 0.00 3.56
593 608 6.990341 TGGACAAGTGATCATACAGAAATG 57.010 37.500 0.00 0.00 0.00 2.32
595 610 5.812127 CGATGGACAAGTGATCATACAGAAA 59.188 40.000 0.00 0.00 0.00 2.52
596 611 5.351458 CGATGGACAAGTGATCATACAGAA 58.649 41.667 0.00 0.00 0.00 3.02
597 612 4.737649 GCGATGGACAAGTGATCATACAGA 60.738 45.833 0.00 0.00 0.00 3.41
598 613 3.492383 GCGATGGACAAGTGATCATACAG 59.508 47.826 0.00 0.00 0.00 2.74
599 614 3.457234 GCGATGGACAAGTGATCATACA 58.543 45.455 0.00 0.00 0.00 2.29
600 615 2.802816 GGCGATGGACAAGTGATCATAC 59.197 50.000 0.00 0.00 0.00 2.39
601 616 2.700371 AGGCGATGGACAAGTGATCATA 59.300 45.455 0.00 0.00 0.00 2.15
602 617 1.487976 AGGCGATGGACAAGTGATCAT 59.512 47.619 0.00 0.00 0.00 2.45
603 618 0.904649 AGGCGATGGACAAGTGATCA 59.095 50.000 0.00 0.00 0.00 2.92
604 619 1.134699 TGAGGCGATGGACAAGTGATC 60.135 52.381 0.00 0.00 0.00 2.92
605 620 0.904649 TGAGGCGATGGACAAGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
606 621 0.037326 GTGAGGCGATGGACAAGTGA 60.037 55.000 0.00 0.00 0.00 3.41
607 622 1.021390 GGTGAGGCGATGGACAAGTG 61.021 60.000 0.00 0.00 0.00 3.16
608 623 1.296715 GGTGAGGCGATGGACAAGT 59.703 57.895 0.00 0.00 0.00 3.16
609 624 1.021390 GTGGTGAGGCGATGGACAAG 61.021 60.000 0.00 0.00 0.00 3.16
610 625 1.003839 GTGGTGAGGCGATGGACAA 60.004 57.895 0.00 0.00 0.00 3.18
635 650 7.225538 GTGTGTAGAGATGATGAATTGGGTTAG 59.774 40.741 0.00 0.00 0.00 2.34
636 651 7.047891 GTGTGTAGAGATGATGAATTGGGTTA 58.952 38.462 0.00 0.00 0.00 2.85
637 652 5.882557 GTGTGTAGAGATGATGAATTGGGTT 59.117 40.000 0.00 0.00 0.00 4.11
638 653 5.431765 GTGTGTAGAGATGATGAATTGGGT 58.568 41.667 0.00 0.00 0.00 4.51
639 654 4.818546 GGTGTGTAGAGATGATGAATTGGG 59.181 45.833 0.00 0.00 0.00 4.12
640 655 5.295292 GTGGTGTGTAGAGATGATGAATTGG 59.705 44.000 0.00 0.00 0.00 3.16
641 656 5.876460 TGTGGTGTGTAGAGATGATGAATTG 59.124 40.000 0.00 0.00 0.00 2.32
679 704 3.004106 GTGATCAAATACCCTGCATGAGC 59.996 47.826 0.00 0.00 42.57 4.26
680 705 3.567164 GGTGATCAAATACCCTGCATGAG 59.433 47.826 0.00 0.00 0.00 2.90
681 706 3.053768 TGGTGATCAAATACCCTGCATGA 60.054 43.478 0.00 0.00 36.10 3.07
682 707 3.289836 TGGTGATCAAATACCCTGCATG 58.710 45.455 0.00 0.00 36.10 4.06
683 708 3.559069 CTGGTGATCAAATACCCTGCAT 58.441 45.455 0.00 0.00 36.10 3.96
684 709 2.945440 GCTGGTGATCAAATACCCTGCA 60.945 50.000 19.77 0.00 36.28 4.41
685 710 1.678101 GCTGGTGATCAAATACCCTGC 59.322 52.381 13.10 13.10 36.10 4.85
686 711 3.287867 AGCTGGTGATCAAATACCCTG 57.712 47.619 0.00 0.00 36.10 4.45
687 712 3.181450 GCTAGCTGGTGATCAAATACCCT 60.181 47.826 7.70 0.00 36.10 4.34
688 713 3.142174 GCTAGCTGGTGATCAAATACCC 58.858 50.000 7.70 0.00 36.10 3.69
689 714 4.078639 AGCTAGCTGGTGATCAAATACC 57.921 45.455 18.57 0.00 37.48 2.73
690 715 6.090483 TCTAGCTAGCTGGTGATCAAATAC 57.910 41.667 27.68 0.00 0.00 1.89
701 726 4.708909 TGGTGATATGATCTAGCTAGCTGG 59.291 45.833 27.68 24.43 0.00 4.85
702 727 5.679382 GCTGGTGATATGATCTAGCTAGCTG 60.679 48.000 27.68 16.48 32.63 4.24
703 728 4.402155 GCTGGTGATATGATCTAGCTAGCT 59.598 45.833 23.12 23.12 32.63 3.32
704 729 4.402155 AGCTGGTGATATGATCTAGCTAGC 59.598 45.833 16.35 6.62 38.76 3.42
705 730 7.263100 CTAGCTGGTGATATGATCTAGCTAG 57.737 44.000 15.01 15.01 44.74 3.42
706 731 5.592282 GCTAGCTGGTGATATGATCTAGCTA 59.408 44.000 7.70 0.00 42.30 3.32
707 732 4.402155 GCTAGCTGGTGATATGATCTAGCT 59.598 45.833 7.70 11.68 42.30 3.32
708 733 4.402155 AGCTAGCTGGTGATATGATCTAGC 59.598 45.833 18.57 9.56 44.51 3.42
709 734 6.828273 AGTAGCTAGCTGGTGATATGATCTAG 59.172 42.308 27.68 0.00 0.00 2.43
710 735 6.726379 AGTAGCTAGCTGGTGATATGATCTA 58.274 40.000 27.68 0.00 0.00 1.98
711 736 5.579047 AGTAGCTAGCTGGTGATATGATCT 58.421 41.667 27.68 0.00 0.00 2.75
712 737 5.163561 GGAGTAGCTAGCTGGTGATATGATC 60.164 48.000 27.68 9.10 0.00 2.92
713 738 4.709397 GGAGTAGCTAGCTGGTGATATGAT 59.291 45.833 27.68 0.00 0.00 2.45
714 739 4.082845 GGAGTAGCTAGCTGGTGATATGA 58.917 47.826 27.68 0.01 0.00 2.15
715 740 3.194542 GGGAGTAGCTAGCTGGTGATATG 59.805 52.174 27.68 0.00 0.00 1.78
716 741 3.076785 AGGGAGTAGCTAGCTGGTGATAT 59.923 47.826 27.68 4.94 0.00 1.63
717 742 2.447429 AGGGAGTAGCTAGCTGGTGATA 59.553 50.000 27.68 2.54 0.00 2.15
718 743 1.219213 AGGGAGTAGCTAGCTGGTGAT 59.781 52.381 27.68 8.03 0.00 3.06
719 744 0.631753 AGGGAGTAGCTAGCTGGTGA 59.368 55.000 27.68 3.83 0.00 4.02
720 745 1.036707 GAGGGAGTAGCTAGCTGGTG 58.963 60.000 27.68 0.00 0.00 4.17
721 746 0.105913 GGAGGGAGTAGCTAGCTGGT 60.106 60.000 27.68 13.91 0.00 4.00
722 747 1.175983 CGGAGGGAGTAGCTAGCTGG 61.176 65.000 27.68 0.00 0.00 4.85
723 748 0.466555 ACGGAGGGAGTAGCTAGCTG 60.467 60.000 27.68 9.37 0.00 4.24
724 749 0.259356 AACGGAGGGAGTAGCTAGCT 59.741 55.000 23.12 23.12 0.00 3.32
725 750 1.112950 AAACGGAGGGAGTAGCTAGC 58.887 55.000 6.62 6.62 0.00 3.42
726 751 3.889520 AAAAACGGAGGGAGTAGCTAG 57.110 47.619 0.00 0.00 0.00 3.42
727 752 5.743636 TTTAAAAACGGAGGGAGTAGCTA 57.256 39.130 0.00 0.00 0.00 3.32
728 753 4.628963 TTTAAAAACGGAGGGAGTAGCT 57.371 40.909 0.00 0.00 0.00 3.32
729 754 7.563888 AATATTTAAAAACGGAGGGAGTAGC 57.436 36.000 0.00 0.00 0.00 3.58
730 755 8.953313 ACAAATATTTAAAAACGGAGGGAGTAG 58.047 33.333 0.00 0.00 0.00 2.57
731 756 8.866970 ACAAATATTTAAAAACGGAGGGAGTA 57.133 30.769 0.00 0.00 0.00 2.59
732 757 7.668469 AGACAAATATTTAAAAACGGAGGGAGT 59.332 33.333 0.00 0.00 0.00 3.85
733 758 8.051901 AGACAAATATTTAAAAACGGAGGGAG 57.948 34.615 0.00 0.00 0.00 4.30
734 759 8.411991 AAGACAAATATTTAAAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
735 760 9.135843 GAAAGACAAATATTTAAAAACGGAGGG 57.864 33.333 0.00 0.00 0.00 4.30
736 761 9.908152 AGAAAGACAAATATTTAAAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
764 789 9.864034 CCGTATGTAATAGTCATTTGAAATGTC 57.136 33.333 16.62 11.74 0.00 3.06
765 790 9.607988 TCCGTATGTAATAGTCATTTGAAATGT 57.392 29.630 16.62 2.38 0.00 2.71
768 793 9.607988 ACATCCGTATGTAATAGTCATTTGAAA 57.392 29.630 0.00 0.00 44.66 2.69
813 838 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
814 839 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
815 840 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
816 841 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
817 842 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
818 843 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
819 844 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
820 845 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
821 846 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
822 847 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
823 848 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
824 849 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
825 850 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
826 851 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
827 852 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
828 853 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
829 854 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
830 855 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
831 856 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
832 857 6.939551 TTAACAAGTGACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
833 858 9.741168 CATTTTAACAAGTGACTACATACGAAG 57.259 33.333 0.00 0.00 0.00 3.79
834 859 8.225107 GCATTTTAACAAGTGACTACATACGAA 58.775 33.333 0.00 0.00 0.00 3.85
835 860 7.148540 GGCATTTTAACAAGTGACTACATACGA 60.149 37.037 0.00 0.00 0.00 3.43
836 861 6.959311 GGCATTTTAACAAGTGACTACATACG 59.041 38.462 0.00 0.00 0.00 3.06
837 862 8.040716 AGGCATTTTAACAAGTGACTACATAC 57.959 34.615 0.00 0.00 36.22 2.39
838 863 9.727859 TTAGGCATTTTAACAAGTGACTACATA 57.272 29.630 0.00 0.00 39.37 2.29
839 864 8.630054 TTAGGCATTTTAACAAGTGACTACAT 57.370 30.769 0.00 0.00 39.37 2.29
840 865 8.453238 TTTAGGCATTTTAACAAGTGACTACA 57.547 30.769 0.00 0.00 39.37 2.74
841 866 9.738832 TTTTTAGGCATTTTAACAAGTGACTAC 57.261 29.630 0.00 0.00 39.37 2.73
842 867 9.959749 CTTTTTAGGCATTTTAACAAGTGACTA 57.040 29.630 0.00 0.00 38.82 2.59
843 868 8.691797 TCTTTTTAGGCATTTTAACAAGTGACT 58.308 29.630 0.00 0.00 40.91 3.41
844 869 8.752254 GTCTTTTTAGGCATTTTAACAAGTGAC 58.248 33.333 0.00 0.00 0.00 3.67
845 870 8.470805 TGTCTTTTTAGGCATTTTAACAAGTGA 58.529 29.630 0.00 0.00 0.00 3.41
846 871 8.641499 TGTCTTTTTAGGCATTTTAACAAGTG 57.359 30.769 0.00 0.00 0.00 3.16
847 872 9.313118 CTTGTCTTTTTAGGCATTTTAACAAGT 57.687 29.630 0.00 0.00 36.66 3.16
848 873 9.313118 ACTTGTCTTTTTAGGCATTTTAACAAG 57.687 29.630 0.00 0.00 43.26 3.16
856 881 9.528489 TCCTAAATACTTGTCTTTTTAGGCATT 57.472 29.630 13.09 0.00 45.31 3.56
857 882 9.528489 TTCCTAAATACTTGTCTTTTTAGGCAT 57.472 29.630 13.09 0.00 45.31 4.40
858 883 8.789762 GTTCCTAAATACTTGTCTTTTTAGGCA 58.210 33.333 13.09 2.93 45.31 4.75
859 884 7.961283 CGTTCCTAAATACTTGTCTTTTTAGGC 59.039 37.037 13.09 3.06 45.31 3.93
860 885 8.448615 CCGTTCCTAAATACTTGTCTTTTTAGG 58.551 37.037 12.11 12.11 46.30 2.69
861 886 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
862 887 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
863 888 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
864 889 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
865 890 6.013984 TCCTCCGTTCCTAAATACTTGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
866 891 5.482878 TCCTCCGTTCCTAAATACTTGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
867 892 5.021458 TCCTCCGTTCCTAAATACTTGTCT 58.979 41.667 0.00 0.00 0.00 3.41
868 893 5.334724 TCCTCCGTTCCTAAATACTTGTC 57.665 43.478 0.00 0.00 0.00 3.18
869 894 5.247792 ACTTCCTCCGTTCCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
870 895 5.731591 ACTTCCTCCGTTCCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
871 896 6.894103 TCTACTTCCTCCGTTCCTAAATACTT 59.106 38.462 0.00 0.00 0.00 2.24
872 897 6.430007 TCTACTTCCTCCGTTCCTAAATACT 58.570 40.000 0.00 0.00 0.00 2.12
873 898 6.705863 TCTACTTCCTCCGTTCCTAAATAC 57.294 41.667 0.00 0.00 0.00 1.89
874 899 7.014038 GTGATCTACTTCCTCCGTTCCTAAATA 59.986 40.741 0.00 0.00 0.00 1.40
875 900 5.897824 TGATCTACTTCCTCCGTTCCTAAAT 59.102 40.000 0.00 0.00 0.00 1.40
876 901 5.126707 GTGATCTACTTCCTCCGTTCCTAAA 59.873 44.000 0.00 0.00 0.00 1.85
877 902 4.643784 GTGATCTACTTCCTCCGTTCCTAA 59.356 45.833 0.00 0.00 0.00 2.69
878 903 4.205587 GTGATCTACTTCCTCCGTTCCTA 58.794 47.826 0.00 0.00 0.00 2.94
879 904 3.025262 GTGATCTACTTCCTCCGTTCCT 58.975 50.000 0.00 0.00 0.00 3.36
880 905 2.758979 TGTGATCTACTTCCTCCGTTCC 59.241 50.000 0.00 0.00 0.00 3.62
881 906 4.425520 CTTGTGATCTACTTCCTCCGTTC 58.574 47.826 0.00 0.00 0.00 3.95
882 907 3.195825 CCTTGTGATCTACTTCCTCCGTT 59.804 47.826 0.00 0.00 0.00 4.44
883 908 2.761208 CCTTGTGATCTACTTCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
884 909 3.024547 TCCTTGTGATCTACTTCCTCCG 58.975 50.000 0.00 0.00 0.00 4.63
885 910 5.279256 GCTATCCTTGTGATCTACTTCCTCC 60.279 48.000 0.00 0.00 34.76 4.30
886 911 5.538433 AGCTATCCTTGTGATCTACTTCCTC 59.462 44.000 0.00 0.00 34.76 3.71
887 912 5.463154 AGCTATCCTTGTGATCTACTTCCT 58.537 41.667 0.00 0.00 34.76 3.36
888 913 5.799827 AGCTATCCTTGTGATCTACTTCC 57.200 43.478 0.00 0.00 34.76 3.46
889 914 6.015856 TGCTAGCTATCCTTGTGATCTACTTC 60.016 42.308 17.23 0.00 34.76 3.01
890 915 5.835819 TGCTAGCTATCCTTGTGATCTACTT 59.164 40.000 17.23 0.00 34.76 2.24
891 916 5.389520 TGCTAGCTATCCTTGTGATCTACT 58.610 41.667 17.23 0.00 34.76 2.57
892 917 5.336372 CCTGCTAGCTATCCTTGTGATCTAC 60.336 48.000 17.23 0.00 34.76 2.59
893 918 4.769488 CCTGCTAGCTATCCTTGTGATCTA 59.231 45.833 17.23 0.00 34.76 1.98
894 919 3.577848 CCTGCTAGCTATCCTTGTGATCT 59.422 47.826 17.23 0.00 34.76 2.75
895 920 3.306641 CCCTGCTAGCTATCCTTGTGATC 60.307 52.174 17.23 0.00 34.76 2.92
896 921 2.636893 CCCTGCTAGCTATCCTTGTGAT 59.363 50.000 17.23 0.00 37.49 3.06
897 922 2.042464 CCCTGCTAGCTATCCTTGTGA 58.958 52.381 17.23 0.00 0.00 3.58
898 923 1.765314 ACCCTGCTAGCTATCCTTGTG 59.235 52.381 17.23 0.00 0.00 3.33
899 924 2.182516 ACCCTGCTAGCTATCCTTGT 57.817 50.000 17.23 0.81 0.00 3.16
900 925 4.899352 AATACCCTGCTAGCTATCCTTG 57.101 45.455 17.23 0.18 0.00 3.61
901 926 4.907875 TCAAATACCCTGCTAGCTATCCTT 59.092 41.667 17.23 0.00 0.00 3.36
902 927 4.493618 TCAAATACCCTGCTAGCTATCCT 58.506 43.478 17.23 0.00 0.00 3.24
903 928 4.891992 TCAAATACCCTGCTAGCTATCC 57.108 45.455 17.23 0.00 0.00 2.59
904 929 6.042638 TGATCAAATACCCTGCTAGCTATC 57.957 41.667 17.23 0.00 0.00 2.08
905 930 5.782331 TCTGATCAAATACCCTGCTAGCTAT 59.218 40.000 17.23 2.15 0.00 2.97
906 931 5.147767 TCTGATCAAATACCCTGCTAGCTA 58.852 41.667 17.23 0.00 0.00 3.32
907 932 3.969976 TCTGATCAAATACCCTGCTAGCT 59.030 43.478 17.23 0.00 0.00 3.32
908 933 4.342862 TCTGATCAAATACCCTGCTAGC 57.657 45.455 8.10 8.10 0.00 3.42
909 934 6.014755 TCTGATCTGATCAAATACCCTGCTAG 60.015 42.308 19.95 5.32 39.11 3.42
910 935 5.840693 TCTGATCTGATCAAATACCCTGCTA 59.159 40.000 19.95 0.00 39.11 3.49
911 936 4.657504 TCTGATCTGATCAAATACCCTGCT 59.342 41.667 19.95 0.00 39.11 4.24
912 937 4.965814 TCTGATCTGATCAAATACCCTGC 58.034 43.478 19.95 0.00 39.11 4.85
913 938 6.817641 GCTATCTGATCTGATCAAATACCCTG 59.182 42.308 19.95 7.47 39.11 4.45
914 939 6.730038 AGCTATCTGATCTGATCAAATACCCT 59.270 38.462 19.95 11.12 39.11 4.34
915 940 6.945218 AGCTATCTGATCTGATCAAATACCC 58.055 40.000 19.95 9.38 39.11 3.69
916 941 7.706179 GCTAGCTATCTGATCTGATCAAATACC 59.294 40.741 19.95 9.39 39.11 2.73
917 942 8.249638 TGCTAGCTATCTGATCTGATCAAATAC 58.750 37.037 19.95 11.68 39.11 1.89
918 943 8.358582 TGCTAGCTATCTGATCTGATCAAATA 57.641 34.615 19.95 15.70 39.11 1.40
919 944 7.242322 TGCTAGCTATCTGATCTGATCAAAT 57.758 36.000 19.95 15.42 39.11 2.32
920 945 6.661304 TGCTAGCTATCTGATCTGATCAAA 57.339 37.500 19.95 8.94 39.11 2.69
921 946 5.336610 GCTGCTAGCTATCTGATCTGATCAA 60.337 44.000 19.95 11.98 37.24 2.57
922 947 4.158209 GCTGCTAGCTATCTGATCTGATCA 59.842 45.833 18.61 18.61 38.45 2.92
943 968 3.048600 TGATTGATTACCCTGCTAGGCT 58.951 45.455 0.00 0.00 32.73 4.58
945 970 3.136443 TGGTGATTGATTACCCTGCTAGG 59.864 47.826 2.87 0.00 35.72 3.02
946 971 4.384056 CTGGTGATTGATTACCCTGCTAG 58.616 47.826 2.87 0.00 35.72 3.42
949 974 1.678101 GCTGGTGATTGATTACCCTGC 59.322 52.381 2.87 4.07 35.72 4.85
950 975 3.287867 AGCTGGTGATTGATTACCCTG 57.712 47.619 2.87 0.00 35.72 4.45
951 976 3.181450 GCTAGCTGGTGATTGATTACCCT 60.181 47.826 7.70 0.00 35.72 4.34
952 977 3.142174 GCTAGCTGGTGATTGATTACCC 58.858 50.000 7.70 0.00 35.72 3.69
953 978 4.078639 AGCTAGCTGGTGATTGATTACC 57.921 45.455 18.57 0.00 37.00 2.85
954 979 6.090483 TCTAGCTAGCTGGTGATTGATTAC 57.910 41.667 27.68 0.00 0.00 1.89
955 980 5.279206 GCTCTAGCTAGCTGGTGATTGATTA 60.279 44.000 27.94 7.16 39.50 1.75
1090 1127 1.000283 GTAGGTGATGGAGGCGATGAG 60.000 57.143 0.00 0.00 0.00 2.90
1372 1409 4.742201 CAGGAGGGCCACGACGTG 62.742 72.222 21.02 21.02 36.29 4.49
1539 1576 3.372954 CATCGATCGAGGGTGACTAAAC 58.627 50.000 23.84 0.00 0.00 2.01
1550 1587 3.258228 TCTAGCTCTAGCATCGATCGAG 58.742 50.000 23.84 15.68 45.16 4.04
1582 1619 9.893305 GCAAGTGTAGTACAAAATAAGTCAAAT 57.107 29.630 4.11 0.00 0.00 2.32
1583 1620 9.116067 AGCAAGTGTAGTACAAAATAAGTCAAA 57.884 29.630 4.11 0.00 0.00 2.69
1584 1621 8.671384 AGCAAGTGTAGTACAAAATAAGTCAA 57.329 30.769 4.11 0.00 0.00 3.18
1602 1639 3.054878 GCCAATGAAAACAGAGCAAGTG 58.945 45.455 0.00 0.00 0.00 3.16
1603 1640 2.036346 GGCCAATGAAAACAGAGCAAGT 59.964 45.455 0.00 0.00 0.00 3.16
1604 1641 2.611224 GGGCCAATGAAAACAGAGCAAG 60.611 50.000 4.39 0.00 0.00 4.01
1607 1644 0.968405 TGGGCCAATGAAAACAGAGC 59.032 50.000 2.13 0.00 0.00 4.09
1620 1819 4.853468 TTCAGATTTGTATAGTGGGCCA 57.147 40.909 0.00 0.00 0.00 5.36
1621 1820 6.507023 CAAATTCAGATTTGTATAGTGGGCC 58.493 40.000 0.00 0.00 44.52 5.80
1635 1834 9.132521 CGAAAAGCAAATAAGACAAATTCAGAT 57.867 29.630 0.00 0.00 0.00 2.90
1636 1835 8.506140 CGAAAAGCAAATAAGACAAATTCAGA 57.494 30.769 0.00 0.00 0.00 3.27
1656 1855 5.292101 CGGGCCATATTTAAATTTGCGAAAA 59.708 36.000 4.39 0.00 0.00 2.29
1657 1856 4.806247 CGGGCCATATTTAAATTTGCGAAA 59.194 37.500 4.39 0.00 0.00 3.46
1662 1931 6.314896 TGCTTTTCGGGCCATATTTAAATTTG 59.685 34.615 4.39 8.72 0.00 2.32
1698 2102 8.420222 CAAGTGTAATATATGGCCCATCAAAAA 58.580 33.333 0.00 0.00 0.00 1.94
1738 2142 1.228124 TGCACGGTGGGAAAAGAGG 60.228 57.895 10.60 0.00 0.00 3.69
1740 2144 1.890041 CGTGCACGGTGGGAAAAGA 60.890 57.895 31.15 0.00 35.37 2.52
1751 2155 2.100216 GCCCTAATTGCGTGCACG 59.900 61.111 34.01 34.01 43.27 5.34
1783 2187 4.933330 ACTATAGTACATCGTTGGCAGTG 58.067 43.478 2.75 0.00 0.00 3.66
1790 2194 9.367444 CTTGAGGAAAAACTATAGTACATCGTT 57.633 33.333 5.65 0.00 0.00 3.85
1793 2197 8.950208 AGCTTGAGGAAAAACTATAGTACATC 57.050 34.615 5.65 4.68 0.00 3.06
1794 2198 9.740710 AAAGCTTGAGGAAAAACTATAGTACAT 57.259 29.630 5.65 0.00 0.00 2.29
1795 2199 9.216117 GAAAGCTTGAGGAAAAACTATAGTACA 57.784 33.333 5.65 0.00 0.00 2.90
1796 2200 9.438228 AGAAAGCTTGAGGAAAAACTATAGTAC 57.562 33.333 5.65 0.00 0.00 2.73
1797 2201 9.654663 GAGAAAGCTTGAGGAAAAACTATAGTA 57.345 33.333 5.65 0.00 0.00 1.82
1799 2203 8.553459 TGAGAAAGCTTGAGGAAAAACTATAG 57.447 34.615 0.00 0.00 0.00 1.31
1800 2204 9.167311 GATGAGAAAGCTTGAGGAAAAACTATA 57.833 33.333 0.00 0.00 0.00 1.31
1801 2205 7.887495 AGATGAGAAAGCTTGAGGAAAAACTAT 59.113 33.333 0.00 0.00 0.00 2.12
1802 2206 7.227156 AGATGAGAAAGCTTGAGGAAAAACTA 58.773 34.615 0.00 0.00 0.00 2.24
1814 2218 4.660168 ACATTGTGGAGATGAGAAAGCTT 58.340 39.130 0.00 0.00 0.00 3.74
1848 2253 2.127708 CCCTACAAACCCTAGCCTCAT 58.872 52.381 0.00 0.00 0.00 2.90
1880 2285 3.752747 CCATTGTCATCGCTATTGCCATA 59.247 43.478 0.00 0.00 35.36 2.74
1925 2330 1.153489 CGTGACCCAGATGAGGCTG 60.153 63.158 0.00 0.00 35.66 4.85
1934 2339 3.589654 ATGCACCGACGTGACCCAG 62.590 63.158 0.00 0.00 43.14 4.45
1937 2342 2.781595 AAGGATGCACCGACGTGACC 62.782 60.000 0.00 0.00 43.14 4.02
1990 2395 1.448540 CGACCACCCTCATGAGCAC 60.449 63.158 17.76 3.60 0.00 4.40
2027 2432 2.491022 CGTAGCGAGGGAAGGAGGG 61.491 68.421 0.00 0.00 0.00 4.30
2028 2433 1.753463 ACGTAGCGAGGGAAGGAGG 60.753 63.158 0.00 0.00 0.00 4.30
2029 2434 1.030488 TCACGTAGCGAGGGAAGGAG 61.030 60.000 0.00 0.00 0.00 3.69
2030 2435 0.609957 TTCACGTAGCGAGGGAAGGA 60.610 55.000 0.00 0.00 0.00 3.36
2031 2436 0.460311 ATTCACGTAGCGAGGGAAGG 59.540 55.000 0.00 0.00 0.00 3.46
2032 2437 2.295253 AATTCACGTAGCGAGGGAAG 57.705 50.000 0.00 0.00 0.00 3.46
2033 2438 2.343101 CAAATTCACGTAGCGAGGGAA 58.657 47.619 0.00 0.00 0.00 3.97
2056 2461 1.286248 GAAGAGGGGGCCTGACTTAA 58.714 55.000 0.84 0.00 31.76 1.85
2059 2473 2.285743 GGAAGAGGGGGCCTGACT 60.286 66.667 0.84 0.00 31.76 3.41
2067 2481 0.178964 TGCCAAAACTGGAAGAGGGG 60.179 55.000 0.00 0.00 37.43 4.79
2155 2569 8.472236 GTTCGCAAAATGAAAAAGAACTAGAAG 58.528 33.333 0.00 0.00 35.15 2.85
2334 2772 6.333416 TCTAAGACACTCTTCATGAATTCGG 58.667 40.000 8.96 2.43 37.89 4.30
2361 2799 9.689976 TTCATGATTTCATAAAACGTTCACAAT 57.310 25.926 0.00 0.00 34.26 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.