>input_sequence_77294
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----------------------------------------------------------------ATGTCCTCATCCGTGG
CGGTCCAGGTCACCGCCACGCCGCC------------GACGGAGTCCATCCGGGAGCTGCGCGGGTGGCTCATGGTGCTG
GCCACCCTCATCGCCTCCATCACCTACGCCTCCGGCCTCAGCCCGCCGGGCGGCTTCGAGAGAGTCAAGACGCCGCTGCT
CGCCGACCCCAAGAGGCCGCCGGCCGCCTCCGGGACGCAGATGCTCCCCTCCCTGTACCTCGCGAGCCCGGCGAGGTGCA
GGGTCTTCTACTACGCCAACACGGCCGCCTTGGCGCTCTCGCTCTCCCTCATCCTGCTGCTGGGCAGCCAGGACCTGCGC
CGCCTGGCCAGGGTCAAGGCCCTCGACCTCGAGATCCTCGTCGCGCTCCACGTCGTGGCCCTCCTGGTGGCCTACCTCGC
CGGCGCCGGCTCGTTCGGCGACCTGCAGCTCCTCGTCTGCGCCGGGGTCGTCCTCGTCGTGCCGCTGGCCCTGGTCGCCA
TGTCGTCACGCCTCTGCGGGAACTACTTCTGGGATGAACTCTGA------------------------------------
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>chr2A_1_TraesCS2A01G000300
TTAGCCATGTATTTGAAAAGGTCTTTTAGATGTATGCAAAAAAAGTACAATGTGTATGAAAAAAGTAGACATTAAACATA
AATCTGAAAAAATGTTGGTCATGTATTTGAAAAATGTTAAACGTGTATTTAAAATGTTCCTGGTGTATATGAAACACATA
CAATGTAGTATATGAAAAAAATTAACATGTGTTG------AAAAGAAAAAGAATGGACAAATAAAAATGGAAGGAAAACT
GGT--GAAAGCCAAACACAACAATTTCATGACAAGAAGAAAATTACTGAGGCGAATTTATTATGCTTGACAACTAAACTT
GTCATTCTTATTAAACATAATTTGCCATGTTAAAAGTCAGATGTTCGCTAGATATTTCGGTCCTTGATCAACAA------
GCACAGCTAGCTCAAGAGAATATAATGTATAAAGCGTGAGTCACGCACCTACGCACGGTTTGCATATTCTAACTCTGCTT
CGATCGGTAAGCTTGCTTGTTATAATTAGAGTAGCTACGTAGGCTTTGATGATAGGTAAGGATGCAATTCATGCATGGCT
AAACAATCTAATCTTCTTGTGGCATCACCACTTGACTAATTAATAAGCATTTCTGTATGATCACTTGTCCATCGCCTCAC
CACTCTAATCTAACCC----------AATTCATCATCTCTACACACCACATGTATGTTGTCATGCTCATGCAGGGTATTT
GATCACCAGCTAGCTAGATCATATCACCAGCTAGCTACTCCCTCCGTTTTTAAATATTTGTCTTTCTAGACATTTCAAAT
GACTATTACATACGGATGTATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTTCGTATGTAGTCACTTGTTAA
AATGCCTAAAAAGACAAGTATTTAGGAACGGAGGAAGTAGATCACAAGGATAGCTAGCAGGGTATTTGATCAGATCAGAT
AGCTAGCAGCCTAGCAGGGTAATCAATCACCAGCTAGCTAGAGCTAGACACCTAGACCTAGTCAATGTCCTCATCCGTGG
CGGTCCAGGTCACCGCCACGCCGCC------------GACGGAGTCCATCCGGGAGCTGCGCGGGTGGCTCATGGTGCTG
GCCACCCTCATCGCCTCCATCACCTACGCCTCCGGCCTCAGCCCGCCGGGCGGCTTCGAGAGAGTCAAGACGCCGCTGCT
CGCCGACCCCAAGAGGCCGCCGGCCGCCTCCGGGACGCAGATGCTCCCCTCCCTGTACCTCGCGAGCCCGGCGAGGTGCA
GGGTCTTCTACTACGCCAACACGGCCGCCTTGGCGCTCTCGCTCTCCCTCATCCTGCTGCTGGGCAGCCAGGACCTGCGC
CGCCTGGCCAGGGTCAAGGCCCTCGACCTCGAGATCCTCGTCGCGCTCCACGTCGTGGCCCTCCTGGTGGCCTACCTCGC
CGGCGCCGGCTCGTTCGGCGACCTGCAGCTCCTCGTCTGCGCCGGGGTCGTCCTCGTCGTGCCGCTGGCCCTGGTCGCCA
TGTCGTCACGCCTCTGCGGGAACTACTTCTGGGATGAACTCTGAAATCTGAATTGGTTTAGTCACCCTCGATCGATGCTA
GAGCTAGATCGATCAATGATTTGACTTATTTTGTACTACACTTGC-----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCTGTTTTCATTGGCCCACTATACAAATCTGAA
TTTGTCTTATTTGCTTT---------------------------------------------------------------
-------TCGCAAATTTAAATATGGCC-----------------------------------------------------
--------------------------------------------------------------------------------
--CGAAAAGCAAATAAGACAATTTTTGATGGGCCATATATTACACTTGGGTTCTCTCTCCTCCTCTTTTCCCACCGTGCA
CGCAATTAGGGCGAACCGTCGTTCCCCACTGCCAACGATGTACTATAGTTTTTCCTCAAGCTTTCTCATCTCCACAATGT
AGCC-ATGGCTCATGAGGCTAGGGTTTGTAGGGTATGTCAACACTATGGCAATAGCGATGACAATGGTTTCCTCTGCAAT
TTGGTACTCCAGCCTCATCTGGGTCACGTCGGTGCATCCTTGTAGGAGCCCCACAAGGGATAACCCTTACTTAGGTGCTC
ATGAGGGTGGTCGACCAAACACGCCCCCCCCCCCTCCTTCCCTCGCTACGTGAATTTGGGT---------TAAGTCAGGC
CCCCTCTTCCAGTTTTGGCAAGGTCATTCCTAGACTGATTTTTTGTTGTTTTTTTATGTTTTTTATTTTAATTTTTTTAC
TTCCTTCACTTCTAG--------TTCTTTTTCATTTTGCGAACATCTTTCAAATTCATGAATC-TATTTTTTTTCACATC
ATGAATATATTTAAAATTCACAAATATATTTTG--------AA-------CATTTCTACAATCAAGATTTTCTTTTACAA
ATTTGTGAACTTTTTAAAATTGTGAACATTTATGAAATCCTGAACATTTTTCCGAATTCATGAAGAGTGTCTTAGATAAT
TGTGAACGTTTTATGAAATCATGAACATTTTTTAAATTTAAGAACATTTTATAAATTCAAAACATATTTTAGAATAGTAA
ACATTTTCAAAATCT-TGAACATTTTCTAAATATGCGAATATTTTT-CGAATTAGTGAACTTTTCTTGAAATTCATGAAT
AAATATT
>chr2B_167
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------AGTATATGGAAAAAAATAACATATGTTGAAAAATAAAAGAAAAAGAATGGACAAATAAAAATGAAATGAAAACC
AAAGAGAAAGCCAAACACAACAATTTCCCGAGAAAAAAAA----ACTGAGGTGAATTTATCATGCTTGCCAACTAAACTT
GTCAACCTCATTAAACATAATTTGCCATGTTAAAAGTCAGATGTTCGCTAGATATTTCGGTCCTTGATCAACTCTTAGAT
GCACAGCTAGCTCAAGAGAATTGGAGTATAAA--------------------GCACGGTTTGCATATTCTAACTCTGCTT
CGGTAA--------GCTTGTTATAATTAAAATTAGAGTA---GCTTCGATGATAGGTAAGGATGC-------------CT
AAACAATCTAATCTTGTTGTGGCATCACCACTTGACTAATGTTTCTATA----------------TGTCCATCGCCTCAC
CACTCTAATGATCTAATCTAATCCAAAATTCATCATCTCTACACACCACATGTGTATGATAGC------------TATTT
GATCA---------------------------------------------------------------------------
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-------------------------------------------------------------------GATCAGATCAGAT
AGCTAGCGGGGTA-------AATCAATCACCAGCTAGCTAGAGCTAGACACCTAGACCTAGTCAATGTCCTCATCCGCGC
CGGTCCCGGGCACCGCCACGCCGCCGACAGGGCCGATGACGGAGTCCATCCGGGAGCTGCGCGGGTGGCTCATGGTGCTG
GCCACCGTCATCGCCTCCATCACCTACGCCTCCGGCCTCAGCCCGCCGGGCGGCTTCGAGAGGGTCAAGACGCCGATGCT
CGACGACCCCAAGAGGCCGCCGGCCGCCTCCGGGACGCAGATGCTCCCCTCCCTCTACCTCGCGAGCCCGGCGAGGTGCA
GGGTCTTCTGCTACGCCAACACCGCCGCCTTGGCGCTCTCGCTCTCCCTCATCCTGCTGCTGGGCAGCCAGGACCTGCGC
CGCCTGGCCAGGGTCAAGGCCCT------CGAGATCCTCGTCGCGCTCGACGTCGTGGCGCTGCTGGTCGCCTACCTCGC
CGGCGCCGGCTCGTTCGGCGACCTGCAGCTCGTGGTCTGCGCCGGGGTCGTCCTCGTCGTGCCGCTGGCCCTCGTAGCCA
TGTCGTCGCGCCTGTGCGGGAACTACTTCTGGGATGAACTCTGAAATCTGAATTGATTCAGTCACCGTCGATCGATGCTA
GAGCTAGATCGATCAAA----TGATTTATTTTGTACT-------------------------------------------
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>chr2D_1031
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--------------GCCACGCCGCCGG---------TGACGGAGTCCATCCGGGAGCTGCGCGGGTGGCTCATGGTGCTG
GCCACCGTCATCGCCTCCATCACCTACGCCTCCGGCCTCAGCCCGCCGGGCGGCTTCGAGAGAGTCAAGACGCCGCTGCT
CGACGACCCCAAGAGGCCGCCGGCCGCCTCCGAGACGCAGATGCTCCCTTCCCTTTACCTCGTGAGCCCGGCGAGGTGCA
GGGTCTTCTACTACGCCAACACCGCCGCCTTGGCGCTCTCGCTCTCCCTCATCCTGCTGCTGGGCAGCCAGGACCTGCGC
CGCCTGGCCAGGGTCAAGGCCCT------CGAGATCCTCATCGCGCTCGACGTCGTGGCCCTCCTGGTCGCCTACCTCGC
CGGCGCCGGCTCGTTCGGCGACCTGCAGCTCGTCGTCTGCGCCGGAGTCGTCCTCGTCGTGCCGCTGGTCCTGGTCGCCA
TGTCGTCGCGCCTCTGCGGGAAGTACTTCTGGGATGAGCTCTA-------AATTGATTTAGCCAACGTCGATCAAATGAT
TTGCGTGAGCG----------TGACTTATTTTGTGCTAGTATTTCTGAAATATAAAACATGTGCCTTGGGTTTTCGGGGC
ATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGGTTGCT
TCCCTCTAAGGCGGAACGCTCCCCTATCGATGCATGACATCCCACAGTCTGTTTTCATGTTTATTACGTTATGCACCAGC
GGGCGCAGCTTCACACTCCTACACATTTCCAAAATTTGAAATAAAGACATAGACACAAGCTGCAATTTTAACACGGCAAC
AAAACACTCGAAAATTTAAATATGGCCCGAAAAGCAAAAAGGGCAACCCGGTGCATGTAGCTCCCGCTTGCCAGGGTCCG
GGGAAGGGTCCGACCACTTTGGGTCTATTGTACGCAATCTTTCCCTACATTTCTGCAAGAGGCTGTTTCCAGGACTTGAA
CCCGAAAAGCAAATAAGACAAATTTTGATGGGCCATATATTACACTTGGGTTCTCTCTCCTTCCCTTTTCCCTCTG----
-GCAATCAGGACGAACCGTCGTTCCCTACTGCCCACCGACGAAA--AGTTTTTCCTCGAGCTTTCTCATCTCCACGGTGT
AGCCTATGGCTCCTCAGGCTAGG---------GTATGTCAACACGATGGCAATAGCGTTGACAACGGTTTCCTCTGTAAT
TTGA--------------------CACGTTGGTGCATCCTTGTAGGAGCTCCACAACGGGTAACCCTTACTTAGTTGCTC
ATGAGAGTGGTCGACCAAACACGCACCCCCC-------TCCCTCGCTACGTGAATTTGGGCCAACCCAAGTAGGTCAGGC
TCCCACTTCCGGTTTTGGGAAGGTTGTTCCCACACTGATTTTTTGTTGTTTTTTATT--------------TTATTTTTA
CTTTTTATTTTATGTTATTTTTCTTTTTTTTCATTTTGTGAAAATCTTTCAAATTCATGAATTATTTTTTG----AAATC
ATGAATATATTTAAAACTCACAAATATATTTTTGAATTGTTAA-------CATTTCTACCATCGAGATTTTGTTTTACAA
ATTTGTGATTTTCTTAAAAATGTGGACATTTATGAAATCCTGAACATTTTTTCGAATTTGTGAAGGGTGTCTTAGAAATT
TGTGATCGTTTTATGAAATCATGAACTTTTTCTAAATT----------------------AAAATAAATTTAAATACTAA
ATATTTTTAAACAACATGAA-ATATTCTAAATATGTGAATAGTTTTTCAAATTAGTGAACATTTTTCGAAATTCATGAAA
AAAAATT
>chr2B_1660
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-------TCGAAAATTCAAATATGGCC-----------------------------------------------------
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--CGAAAAGCAAATAAGACAAATTTTGATGGGCCATATATTAAACTTGGGTTTTTTCTCCTTCCCTTTTTCCACTG----
-TCAATGATGTATT---------------------------------GTTTTCCCTCGAGCTTTCTCATCTCCACAATGC
AGCCTATGGCTCTTGAGGCTAGGGTTTGTAGGGTATGTCAACACGATGGCAATAGCGATGACAATGGTTTCCACTGCAAT
TTGGCCCTCGAGCCTCATTTGTGTCACGTCGGTGCATCCTTGTAGGAGCCTCGCAAGGGGTAACCA----TTAGTTGCTC
ATGAGAGTGGTTGACCAAACACGCCCCCCCC-------TCCCTCGCTGCGTGAAATTGGGCCAACCCAAGTAGGTCAGGC
TCCCTCTTCCAGTTTTGGCAAGGTCGTTCCCGGACCGACTTTTTGTTTTTTTTTGTT--------------TTTTTTTAC
TTTCTTCATTTCTAG--------TTCTTTTTCATTTTGCCATCATCTTTCAAATTCATGAATT-TTTTTTA----ACATC
ATGAATATATTTAAAATTCACAAATATATTTTG--------AATTGTTAACATTTCTACAATCAAGATTTTCTTTTACAA
ATTTGTGAACTTTTTAAAATTCTTAACATTTATGAAATCCTGAACATTTTTTCGAATTCGTGAAGAGTGTCTTAGATATT
TGTGAACGTTTTATGAAATCATGAACATTTTTTAAATTTAAGAACATTTTTAAAATTAAAAACATATTTTGGACTAGTAA
ACATTTTTCAAAATCGTGAACATTTTCTAAATAAGTGAATATTTTT-CAAATTAGTGA---TTTTTTGAAATTCATGAAT
ATATATT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------S------S------S----------------------------------------S--S------S
SSS------------------------SS--S--S--S--SSSS-------S--------S-------S-----------
----SS--S---------------------------------------------------------------SS------
---------------------SSS-SSSSS--SSSSSSSSSSSSSSSSSSSS----------------------------
--S-SSSSSSSSSS--------------S-S-SSSSSSSSSS----S------------------SSSSSSSSSSSSS--
---------------S------------------------SSS-SSSS-SSSSSSSSSSSSSSSS---------------
---------SSSSSSS-------------------------------------S-S-SS-SSSSSSSSSSSSSSS-----
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
-------S-SS--SSSSSSS---------------------------------------------------------S-S
------S--S----------------------------------------------------------------------
------S-------------------------------------------------------------------------
--S---------------------------------------------------S-------------------------
----------------------S---------------------------------------------------------
-----------------------SSSSSS-------------------S-------------------S-----------
-------------------------------S------------------------------------------------
-------S-----------------------------------------------S----------S-------------
----------------SSSSS-----------------SSS--S------------------------------------
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----------------------------------------------------------SSSSSSSSSS-SSSSSS-SSSS
SSSSS-SSS--SS-SS----------------------------------------------------------------
----------S---------------------------------------------------------------------
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---------------------S---------------------------------------S-S----------S-SSSS
S-----S---S---------------S------S--SSSSS-SSSS-----------S----------------------
------------S-------------------------------S-----------------------------------
----SS---S--------S--S-------------------------------------S--------------S-----
-----S-------------------------SSSSSSS----------------------S-----------S-------
S------------------------S----S-----------------------SS-SSSSSSSSSSSSSS---------
--S-----S-----------------------------------------------------S--S----SSSSS-----
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---------------------------------------------------S-------S------------------S-
--------------------------------------------------SS-----S------------S---------
-------S----SSS--------------------S------------S-----------S---S---------------
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>forward_765
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-------------------------ACCAGCTAGCTACTCCCTCC-----------------------------------
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>reverse_2481
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CCCCTCTTCCAGTTTTGGCA------------------------------------------------------------
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