Multiple sequence alignment - TraesCS1D01G444300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G444300 chr1D 100.000 3705 0 0 1 3705 487636303 487632599 0.000000e+00 6842.0
1 TraesCS1D01G444300 chr1D 91.573 356 27 2 3350 3705 148689078 148688726 4.300000e-134 488.0
2 TraesCS1D01G444300 chr1D 91.243 354 31 0 3352 3705 361907184 361906831 2.000000e-132 483.0
3 TraesCS1D01G444300 chr1A 89.447 2786 204 53 394 3128 585823697 585820951 0.000000e+00 3434.0
4 TraesCS1D01G444300 chr1A 85.601 1007 120 15 2134 3127 585755108 585754114 0.000000e+00 1033.0
5 TraesCS1D01G444300 chr1B 96.692 1693 27 7 1519 3189 679273684 679271999 0.000000e+00 2789.0
6 TraesCS1D01G444300 chr1B 90.818 1100 60 19 394 1469 679274767 679273685 0.000000e+00 1434.0
7 TraesCS1D01G444300 chr1B 89.098 532 29 13 1 526 679287790 679287282 5.220000e-178 634.0
8 TraesCS1D01G444300 chr3D 92.157 357 27 1 3350 3705 283322508 283322864 1.540000e-138 503.0
9 TraesCS1D01G444300 chr3A 92.135 356 28 0 3350 3705 492413013 492412658 1.540000e-138 503.0
10 TraesCS1D01G444300 chr2D 92.113 355 27 1 3352 3705 364968814 364969168 1.990000e-137 499.0
11 TraesCS1D01G444300 chr2D 78.261 230 33 11 2967 3187 585120192 585120413 8.350000e-27 132.0
12 TraesCS1D01G444300 chr2D 78.261 230 33 11 2967 3187 598076029 598076250 8.350000e-27 132.0
13 TraesCS1D01G444300 chr6D 91.831 355 28 1 3352 3705 145145656 145146010 9.240000e-136 494.0
14 TraesCS1D01G444300 chr6D 91.573 356 26 4 3352 3705 6000908 6001261 4.300000e-134 488.0
15 TraesCS1D01G444300 chr2B 91.549 355 27 3 3352 3705 588809165 588808813 1.550000e-133 486.0
16 TraesCS1D01G444300 chr5D 91.243 354 31 0 3352 3705 439411601 439411954 2.000000e-132 483.0
17 TraesCS1D01G444300 chr5D 78.261 230 33 11 2967 3187 438688142 438687921 8.350000e-27 132.0
18 TraesCS1D01G444300 chr6B 79.039 229 33 10 2967 3187 4883186 4882965 3.860000e-30 143.0
19 TraesCS1D01G444300 chr5B 79.130 230 31 11 2967 3187 678522853 678523074 3.860000e-30 143.0
20 TraesCS1D01G444300 chr7D 78.261 230 33 11 2967 3187 32055366 32055145 8.350000e-27 132.0
21 TraesCS1D01G444300 chr7D 78.365 208 35 6 2989 3187 24342205 24342411 3.880000e-25 126.0
22 TraesCS1D01G444300 chr4D 77.826 230 34 11 2967 3187 449044085 449044306 3.880000e-25 126.0
23 TraesCS1D01G444300 chr3B 92.857 56 4 0 3289 3344 773323123 773323178 8.530000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G444300 chr1D 487632599 487636303 3704 True 6842.0 6842 100.000 1 3705 1 chr1D.!!$R3 3704
1 TraesCS1D01G444300 chr1A 585820951 585823697 2746 True 3434.0 3434 89.447 394 3128 1 chr1A.!!$R2 2734
2 TraesCS1D01G444300 chr1A 585754114 585755108 994 True 1033.0 1033 85.601 2134 3127 1 chr1A.!!$R1 993
3 TraesCS1D01G444300 chr1B 679271999 679274767 2768 True 2111.5 2789 93.755 394 3189 2 chr1B.!!$R2 2795
4 TraesCS1D01G444300 chr1B 679287282 679287790 508 True 634.0 634 89.098 1 526 1 chr1B.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 983 1.000896 CTTCTGACCGCCCCCAAAT 60.001 57.895 0.0 0.0 0.0 2.32 F
1117 1136 0.517316 GTCGCCGCTCATTTCACTTT 59.483 50.000 0.0 0.0 0.0 2.66 F
1802 1871 0.391597 GATCGATTCTTACCGGCCCA 59.608 55.000 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1871 1.542492 CACTCCTTTCTTGCCTGCAT 58.458 50.0 0.00 0.00 0.00 3.96 R
2564 2652 1.642952 GCCACTGCTGCTAGCTGAAC 61.643 60.0 24.19 8.78 41.94 3.18 R
3426 3539 0.031721 AGAAACTGACCGGACACGAC 59.968 55.0 9.46 0.00 44.60 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.857152 GTGTAAACGTACGTGTGGTCAA 59.143 45.455 23.57 0.00 32.40 3.18
64 65 1.302033 CGGCCCATGTATGAGCTCC 60.302 63.158 12.15 0.00 31.62 4.70
102 104 8.980481 TTTGAAACTTCTAGAATCTTCCAACT 57.020 30.769 17.62 0.00 0.00 3.16
115 117 8.749354 AGAATCTTCCAACTAGTTTTTGTTTGT 58.251 29.630 5.07 0.00 0.00 2.83
116 118 9.366216 GAATCTTCCAACTAGTTTTTGTTTGTT 57.634 29.630 5.07 0.00 0.00 2.83
120 122 9.805966 CTTCCAACTAGTTTTTGTTTGTTTTTC 57.194 29.630 5.07 0.00 0.00 2.29
122 124 9.198837 TCCAACTAGTTTTTGTTTGTTTTTCTC 57.801 29.630 5.07 0.00 0.00 2.87
286 291 9.458374 TTCTTTTCCAAATTCACGAACTATTTC 57.542 29.630 0.00 0.00 0.00 2.17
324 329 5.613964 TTTTGAAAGTTCGCGAACATTTC 57.386 34.783 42.89 39.21 43.47 2.17
325 330 4.545823 TTGAAAGTTCGCGAACATTTCT 57.454 36.364 38.97 27.84 43.47 2.52
329 334 3.999229 AGTTCGCGAACATTTCTCATC 57.001 42.857 42.89 20.12 43.47 2.92
338 343 4.218417 CGAACATTTCTCATCCCCAACTTT 59.782 41.667 0.00 0.00 0.00 2.66
367 372 9.447157 AAAAATTTCATGAACTTTCTCCAAACA 57.553 25.926 20.20 0.00 0.00 2.83
468 476 2.169789 CATGGAACGGCGCTCTCAG 61.170 63.158 6.90 0.00 0.00 3.35
546 554 1.087501 GGAGCCAGTTAAAGCGGAAG 58.912 55.000 0.00 0.00 0.00 3.46
708 718 7.547370 GCTCATATACTAGATTGAAAATCGCCT 59.453 37.037 0.00 0.00 0.00 5.52
746 756 5.799936 CCATTGTGTCGTTGATCCAATTTAC 59.200 40.000 0.00 0.00 0.00 2.01
747 757 6.349280 CCATTGTGTCGTTGATCCAATTTACT 60.349 38.462 0.00 0.00 0.00 2.24
748 758 7.148323 CCATTGTGTCGTTGATCCAATTTACTA 60.148 37.037 0.00 0.00 0.00 1.82
749 759 6.961359 TGTGTCGTTGATCCAATTTACTAG 57.039 37.500 0.00 0.00 0.00 2.57
757 767 9.543018 CGTTGATCCAATTTACTAGTTTCTTTC 57.457 33.333 0.00 0.00 0.00 2.62
768 778 4.530946 ACTAGTTTCTTTCGGGATTGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
840 850 5.506686 TGAGTTAGTTCTGGATCAGATCG 57.493 43.478 4.23 0.00 40.39 3.69
844 854 5.067153 AGTTAGTTCTGGATCAGATCGTCTG 59.933 44.000 4.23 8.24 45.59 3.51
882 895 9.626045 ACTCGTTGATCCAATTTATTTTCTTTC 57.374 29.630 0.00 0.00 0.00 2.62
883 896 9.846248 CTCGTTGATCCAATTTATTTTCTTTCT 57.154 29.630 0.00 0.00 0.00 2.52
920 933 4.811024 TGTTGATCGATCCTATTCTGTTGC 59.189 41.667 22.31 0.00 0.00 4.17
970 983 1.000896 CTTCTGACCGCCCCCAAAT 60.001 57.895 0.00 0.00 0.00 2.32
1110 1129 1.589993 CTCATCGTCGCCGCTCATT 60.590 57.895 0.00 0.00 0.00 2.57
1111 1130 1.148157 CTCATCGTCGCCGCTCATTT 61.148 55.000 0.00 0.00 0.00 2.32
1113 1132 1.153647 ATCGTCGCCGCTCATTTCA 60.154 52.632 0.00 0.00 0.00 2.69
1115 1134 2.094659 CGTCGCCGCTCATTTCACT 61.095 57.895 0.00 0.00 0.00 3.41
1117 1136 0.517316 GTCGCCGCTCATTTCACTTT 59.483 50.000 0.00 0.00 0.00 2.66
1121 1140 2.319472 GCCGCTCATTTCACTTTTCAC 58.681 47.619 0.00 0.00 0.00 3.18
1122 1141 2.574322 CCGCTCATTTCACTTTTCACG 58.426 47.619 0.00 0.00 0.00 4.35
1123 1142 2.032030 CCGCTCATTTCACTTTTCACGT 60.032 45.455 0.00 0.00 0.00 4.49
1124 1143 3.218398 CGCTCATTTCACTTTTCACGTC 58.782 45.455 0.00 0.00 0.00 4.34
1125 1144 3.059597 CGCTCATTTCACTTTTCACGTCT 60.060 43.478 0.00 0.00 0.00 4.18
1128 1147 3.813166 TCATTTCACTTTTCACGTCTCCC 59.187 43.478 0.00 0.00 0.00 4.30
1287 1328 6.871844 TCAACAAGATGACCAACAATTTCAA 58.128 32.000 0.00 0.00 0.00 2.69
1399 1440 4.421479 AGCGCCTCAACGGAGTCG 62.421 66.667 2.29 0.00 45.00 4.18
1432 1473 3.058160 GCTCAGGTGCGTGCCAAT 61.058 61.111 0.59 0.00 0.00 3.16
1470 1519 6.501781 TCTGAATATCCGATCGATGATGATG 58.498 40.000 18.66 0.00 31.92 3.07
1474 1523 1.073964 CCGATCGATGATGATGCCAC 58.926 55.000 18.66 0.00 0.00 5.01
1475 1524 0.712222 CGATCGATGATGATGCCACG 59.288 55.000 10.26 0.00 0.00 4.94
1476 1525 1.788258 GATCGATGATGATGCCACGT 58.212 50.000 0.54 0.00 0.00 4.49
1484 1533 4.465512 GATGCCACGTTGCCGCAG 62.466 66.667 9.38 0.00 35.66 5.18
1672 1728 2.406596 ATCAATTTGCAACCATGGGC 57.593 45.000 18.09 11.53 0.00 5.36
1802 1871 0.391597 GATCGATTCTTACCGGCCCA 59.608 55.000 0.00 0.00 0.00 5.36
1992 2061 2.538333 CGAATTCAGCTCCAAGATTGCG 60.538 50.000 6.22 0.00 0.00 4.85
2043 2112 2.469516 CGCTGCCCGGTTACATTCC 61.470 63.158 0.00 0.00 0.00 3.01
2106 2179 4.674281 AGACCGACCCTATGAATTCTTC 57.326 45.455 7.05 0.00 0.00 2.87
2405 2491 3.160047 ATCCTCTGAGGCAGGCCG 61.160 66.667 19.08 0.00 41.95 6.13
2440 2526 5.573146 AGCGAAGATAAAGTAAAGCAATGC 58.427 37.500 0.00 0.00 0.00 3.56
2564 2652 2.357637 ACCGAGGTTGTGTTTTCATGTG 59.642 45.455 0.00 0.00 0.00 3.21
2635 2723 1.201647 AGACCGAACATGACGATCGTT 59.798 47.619 23.63 5.51 38.17 3.85
2802 2894 9.166173 TCATCTACTTGATTTGTTTAGGTCATG 57.834 33.333 0.00 0.00 32.05 3.07
2887 2979 7.111041 CGAAAACCGTGTAGACAAATTAAACAG 59.889 37.037 0.00 0.00 0.00 3.16
2888 2980 5.934935 ACCGTGTAGACAAATTAAACAGG 57.065 39.130 0.00 0.00 0.00 4.00
2889 2981 5.613329 ACCGTGTAGACAAATTAAACAGGA 58.387 37.500 0.00 0.00 0.00 3.86
2976 3088 9.440773 TGATATGAATGCAATCTACATAGGTTC 57.559 33.333 2.94 0.00 0.00 3.62
2985 3097 7.498900 TGCAATCTACATAGGTTCCAACATAAG 59.501 37.037 0.00 0.00 0.00 1.73
2986 3098 7.499232 GCAATCTACATAGGTTCCAACATAAGT 59.501 37.037 0.00 0.00 32.80 2.24
3177 3290 6.942532 AACTAGTTTTCTGCAAAGATCACA 57.057 33.333 1.12 0.00 0.00 3.58
3189 3302 4.280929 GCAAAGATCACAAACCCCTTTAGT 59.719 41.667 0.00 0.00 0.00 2.24
3190 3303 5.772521 CAAAGATCACAAACCCCTTTAGTG 58.227 41.667 0.00 0.00 0.00 2.74
3191 3304 4.034285 AGATCACAAACCCCTTTAGTGG 57.966 45.455 0.00 0.00 0.00 4.00
3192 3305 1.989706 TCACAAACCCCTTTAGTGGC 58.010 50.000 0.00 0.00 0.00 5.01
3193 3306 0.596082 CACAAACCCCTTTAGTGGCG 59.404 55.000 0.00 0.00 0.00 5.69
3194 3307 0.538746 ACAAACCCCTTTAGTGGCGG 60.539 55.000 0.00 0.00 0.00 6.13
3195 3308 0.250989 CAAACCCCTTTAGTGGCGGA 60.251 55.000 0.00 0.00 0.00 5.54
3196 3309 0.037734 AAACCCCTTTAGTGGCGGAG 59.962 55.000 0.00 0.00 0.00 4.63
3197 3310 0.838987 AACCCCTTTAGTGGCGGAGA 60.839 55.000 0.00 0.00 0.00 3.71
3198 3311 1.221021 CCCCTTTAGTGGCGGAGAC 59.779 63.158 0.00 0.00 0.00 3.36
3208 3321 4.785453 GCGGAGACAGGCCCCAAG 62.785 72.222 0.00 0.00 0.00 3.61
3209 3322 4.785453 CGGAGACAGGCCCCAAGC 62.785 72.222 0.00 0.00 42.60 4.01
3210 3323 3.650950 GGAGACAGGCCCCAAGCA 61.651 66.667 0.00 0.00 46.50 3.91
3211 3324 2.045536 GAGACAGGCCCCAAGCAG 60.046 66.667 0.00 0.00 46.50 4.24
3212 3325 4.357279 AGACAGGCCCCAAGCAGC 62.357 66.667 0.00 0.00 46.50 5.25
3241 3354 4.748144 CCTGGGGCTTGAGGGCAC 62.748 72.222 0.00 0.00 44.95 5.01
3242 3355 3.655211 CTGGGGCTTGAGGGCACT 61.655 66.667 0.00 0.00 44.97 4.40
3243 3356 3.185203 TGGGGCTTGAGGGCACTT 61.185 61.111 0.00 0.00 44.97 3.16
3244 3357 2.118294 GGGGCTTGAGGGCACTTT 59.882 61.111 0.00 0.00 41.10 2.66
3245 3358 1.979155 GGGGCTTGAGGGCACTTTC 60.979 63.158 0.00 0.00 41.10 2.62
3246 3359 1.979155 GGGCTTGAGGGCACTTTCC 60.979 63.158 0.00 0.00 42.84 3.13
3247 3360 1.075659 GGCTTGAGGGCACTTTCCT 59.924 57.895 0.00 0.00 40.53 3.36
3248 3361 0.540597 GGCTTGAGGGCACTTTCCTT 60.541 55.000 0.00 0.00 40.53 3.36
3249 3362 1.332195 GCTTGAGGGCACTTTCCTTT 58.668 50.000 0.00 0.00 34.21 3.11
3250 3363 1.000171 GCTTGAGGGCACTTTCCTTTG 60.000 52.381 0.00 0.00 34.21 2.77
3251 3364 2.310538 CTTGAGGGCACTTTCCTTTGT 58.689 47.619 0.00 0.00 34.21 2.83
3252 3365 2.452600 TGAGGGCACTTTCCTTTGTT 57.547 45.000 0.00 0.00 34.21 2.83
3253 3366 2.306847 TGAGGGCACTTTCCTTTGTTC 58.693 47.619 0.00 0.00 34.21 3.18
3254 3367 2.306847 GAGGGCACTTTCCTTTGTTCA 58.693 47.619 0.00 0.00 34.21 3.18
3255 3368 2.893489 GAGGGCACTTTCCTTTGTTCAT 59.107 45.455 0.00 0.00 34.21 2.57
3256 3369 4.079253 GAGGGCACTTTCCTTTGTTCATA 58.921 43.478 0.00 0.00 34.21 2.15
3257 3370 3.826729 AGGGCACTTTCCTTTGTTCATAC 59.173 43.478 0.00 0.00 0.00 2.39
3258 3371 3.826729 GGGCACTTTCCTTTGTTCATACT 59.173 43.478 0.00 0.00 0.00 2.12
3259 3372 4.280929 GGGCACTTTCCTTTGTTCATACTT 59.719 41.667 0.00 0.00 0.00 2.24
3260 3373 5.461526 GGCACTTTCCTTTGTTCATACTTC 58.538 41.667 0.00 0.00 0.00 3.01
3261 3374 5.009610 GGCACTTTCCTTTGTTCATACTTCA 59.990 40.000 0.00 0.00 0.00 3.02
3262 3375 6.294731 GGCACTTTCCTTTGTTCATACTTCAT 60.295 38.462 0.00 0.00 0.00 2.57
3263 3376 7.094377 GGCACTTTCCTTTGTTCATACTTCATA 60.094 37.037 0.00 0.00 0.00 2.15
3264 3377 7.965107 GCACTTTCCTTTGTTCATACTTCATAG 59.035 37.037 0.00 0.00 0.00 2.23
3265 3378 9.003658 CACTTTCCTTTGTTCATACTTCATAGT 57.996 33.333 0.00 0.00 38.44 2.12
3289 3402 9.530633 AGTAGTAAAATACTGTAGCTACAATGC 57.469 33.333 25.95 12.01 39.81 3.56
3290 3403 9.530633 GTAGTAAAATACTGTAGCTACAATGCT 57.469 33.333 25.95 17.19 41.97 3.79
3299 3412 3.252974 AGCTACAATGCTACAGTGACC 57.747 47.619 0.00 0.00 42.10 4.02
3300 3413 2.567169 AGCTACAATGCTACAGTGACCA 59.433 45.455 0.00 0.00 42.10 4.02
3301 3414 3.007940 AGCTACAATGCTACAGTGACCAA 59.992 43.478 0.00 0.00 42.10 3.67
3302 3415 3.751175 GCTACAATGCTACAGTGACCAAA 59.249 43.478 0.00 0.00 33.46 3.28
3303 3416 4.142816 GCTACAATGCTACAGTGACCAAAG 60.143 45.833 0.00 0.00 33.46 2.77
3304 3417 3.149196 ACAATGCTACAGTGACCAAAGG 58.851 45.455 0.00 0.00 33.46 3.11
3305 3418 1.826385 ATGCTACAGTGACCAAAGGC 58.174 50.000 0.00 0.00 0.00 4.35
3306 3419 0.764890 TGCTACAGTGACCAAAGGCT 59.235 50.000 0.00 0.00 0.00 4.58
3307 3420 1.160137 GCTACAGTGACCAAAGGCTG 58.840 55.000 0.00 0.00 35.31 4.85
3308 3421 1.160137 CTACAGTGACCAAAGGCTGC 58.840 55.000 0.00 0.00 32.65 5.25
3309 3422 0.250727 TACAGTGACCAAAGGCTGCC 60.251 55.000 11.65 11.65 32.65 4.85
3310 3423 1.228367 CAGTGACCAAAGGCTGCCT 60.228 57.895 17.22 17.22 33.87 4.75
3311 3424 0.036732 CAGTGACCAAAGGCTGCCTA 59.963 55.000 23.69 1.22 31.13 3.93
3312 3425 0.326264 AGTGACCAAAGGCTGCCTAG 59.674 55.000 23.69 17.24 31.13 3.02
3313 3426 0.678048 GTGACCAAAGGCTGCCTAGG 60.678 60.000 28.66 28.66 35.75 3.02
3314 3427 0.840288 TGACCAAAGGCTGCCTAGGA 60.840 55.000 33.94 17.97 34.37 2.94
3315 3428 0.393132 GACCAAAGGCTGCCTAGGAC 60.393 60.000 33.94 27.13 34.37 3.85
3316 3429 1.450312 CCAAAGGCTGCCTAGGACG 60.450 63.158 27.29 13.10 32.69 4.79
3317 3430 1.450312 CAAAGGCTGCCTAGGACGG 60.450 63.158 23.69 10.27 31.13 4.79
3334 3447 3.934962 GCCGGGGGCTTTGCAAAA 61.935 61.111 13.84 0.00 46.69 2.44
3335 3448 3.067985 CCGGGGGCTTTGCAAAAT 58.932 55.556 13.84 0.00 0.00 1.82
3336 3449 1.374568 CCGGGGGCTTTGCAAAATT 59.625 52.632 13.84 0.00 0.00 1.82
3337 3450 0.673333 CCGGGGGCTTTGCAAAATTC 60.673 55.000 13.84 5.37 0.00 2.17
3338 3451 0.321346 CGGGGGCTTTGCAAAATTCT 59.679 50.000 13.84 0.00 0.00 2.40
3339 3452 1.548269 CGGGGGCTTTGCAAAATTCTA 59.452 47.619 13.84 0.00 0.00 2.10
3340 3453 2.417243 CGGGGGCTTTGCAAAATTCTAG 60.417 50.000 13.84 0.96 0.00 2.43
3341 3454 2.621338 GGGGCTTTGCAAAATTCTAGC 58.379 47.619 13.84 11.48 0.00 3.42
3342 3455 2.262211 GGGCTTTGCAAAATTCTAGCG 58.738 47.619 13.84 0.00 0.00 4.26
3343 3456 1.655597 GGCTTTGCAAAATTCTAGCGC 59.344 47.619 13.84 10.01 0.00 5.92
3344 3457 1.655597 GCTTTGCAAAATTCTAGCGCC 59.344 47.619 13.84 0.00 0.00 6.53
3345 3458 2.926159 GCTTTGCAAAATTCTAGCGCCA 60.926 45.455 13.84 0.00 0.00 5.69
3346 3459 2.346099 TTGCAAAATTCTAGCGCCAC 57.654 45.000 2.29 0.00 0.00 5.01
3347 3460 1.533625 TGCAAAATTCTAGCGCCACT 58.466 45.000 2.29 0.00 0.00 4.00
3348 3461 1.885887 TGCAAAATTCTAGCGCCACTT 59.114 42.857 2.29 0.00 0.00 3.16
3349 3462 2.295909 TGCAAAATTCTAGCGCCACTTT 59.704 40.909 2.29 0.00 0.00 2.66
3350 3463 3.243704 TGCAAAATTCTAGCGCCACTTTT 60.244 39.130 2.29 0.70 0.00 2.27
3351 3464 4.022762 TGCAAAATTCTAGCGCCACTTTTA 60.023 37.500 2.29 0.00 0.00 1.52
3352 3465 4.558860 GCAAAATTCTAGCGCCACTTTTAG 59.441 41.667 2.29 0.00 0.00 1.85
3353 3466 4.965119 AAATTCTAGCGCCACTTTTAGG 57.035 40.909 2.29 0.00 0.00 2.69
3361 3474 0.888619 GCCACTTTTAGGCCAACTCC 59.111 55.000 5.01 0.00 46.50 3.85
3362 3475 1.821666 GCCACTTTTAGGCCAACTCCA 60.822 52.381 5.01 0.00 46.50 3.86
3363 3476 2.162681 CCACTTTTAGGCCAACTCCAG 58.837 52.381 5.01 0.00 0.00 3.86
3364 3477 1.541588 CACTTTTAGGCCAACTCCAGC 59.458 52.381 5.01 0.00 0.00 4.85
3365 3478 0.804989 CTTTTAGGCCAACTCCAGCG 59.195 55.000 5.01 0.00 0.00 5.18
3366 3479 1.241315 TTTTAGGCCAACTCCAGCGC 61.241 55.000 5.01 0.00 0.00 5.92
3367 3480 2.404566 TTTAGGCCAACTCCAGCGCA 62.405 55.000 11.47 0.00 0.00 6.09
3368 3481 3.605749 TAGGCCAACTCCAGCGCAC 62.606 63.158 11.47 0.00 0.00 5.34
3371 3484 2.434884 CCAACTCCAGCGCACGAT 60.435 61.111 11.47 0.00 0.00 3.73
3372 3485 2.456119 CCAACTCCAGCGCACGATC 61.456 63.158 11.47 0.00 0.00 3.69
3373 3486 2.125512 AACTCCAGCGCACGATCC 60.126 61.111 11.47 0.00 0.00 3.36
3374 3487 3.665675 AACTCCAGCGCACGATCCC 62.666 63.158 11.47 0.00 0.00 3.85
3375 3488 4.147449 CTCCAGCGCACGATCCCA 62.147 66.667 11.47 0.00 0.00 4.37
3376 3489 3.664025 CTCCAGCGCACGATCCCAA 62.664 63.158 11.47 0.00 0.00 4.12
3377 3490 2.745884 CCAGCGCACGATCCCAAA 60.746 61.111 11.47 0.00 0.00 3.28
3378 3491 2.480555 CAGCGCACGATCCCAAAC 59.519 61.111 11.47 0.00 0.00 2.93
3379 3492 3.118454 AGCGCACGATCCCAAACG 61.118 61.111 11.47 0.00 0.00 3.60
3380 3493 4.160635 GCGCACGATCCCAAACGG 62.161 66.667 0.30 0.00 0.00 4.44
3382 3495 2.736682 CGCACGATCCCAAACGGAC 61.737 63.158 0.00 0.00 46.09 4.79
3383 3496 2.736682 GCACGATCCCAAACGGACG 61.737 63.158 0.00 0.00 46.09 4.79
3384 3497 1.373748 CACGATCCCAAACGGACGT 60.374 57.895 0.00 0.00 46.09 4.34
3385 3498 1.080298 ACGATCCCAAACGGACGTC 60.080 57.895 7.13 7.13 46.09 4.34
3386 3499 1.808390 CGATCCCAAACGGACGTCC 60.808 63.158 25.28 25.28 46.09 4.79
3396 3509 2.507769 GGACGTCCGTTTAGCCCG 60.508 66.667 20.85 0.00 0.00 6.13
3397 3510 2.507769 GACGTCCGTTTAGCCCGG 60.508 66.667 3.51 0.00 46.83 5.73
3404 3517 3.453559 CGTTTAGCCCGGATTCTGT 57.546 52.632 0.73 0.00 0.00 3.41
3405 3518 1.287425 CGTTTAGCCCGGATTCTGTC 58.713 55.000 0.73 0.00 0.00 3.51
3406 3519 1.134788 CGTTTAGCCCGGATTCTGTCT 60.135 52.381 0.73 0.00 0.00 3.41
3407 3520 2.280628 GTTTAGCCCGGATTCTGTCTG 58.719 52.381 0.73 0.00 0.00 3.51
3408 3521 1.568504 TTAGCCCGGATTCTGTCTGT 58.431 50.000 0.73 0.00 0.00 3.41
3409 3522 1.568504 TAGCCCGGATTCTGTCTGTT 58.431 50.000 0.73 0.00 0.00 3.16
3410 3523 0.693049 AGCCCGGATTCTGTCTGTTT 59.307 50.000 0.73 0.00 0.00 2.83
3411 3524 0.804989 GCCCGGATTCTGTCTGTTTG 59.195 55.000 0.73 0.00 0.00 2.93
3412 3525 1.453155 CCCGGATTCTGTCTGTTTGG 58.547 55.000 0.73 0.00 0.00 3.28
3413 3526 1.453155 CCGGATTCTGTCTGTTTGGG 58.547 55.000 0.00 0.00 0.00 4.12
3414 3527 1.271379 CCGGATTCTGTCTGTTTGGGT 60.271 52.381 0.00 0.00 0.00 4.51
3415 3528 2.027561 CCGGATTCTGTCTGTTTGGGTA 60.028 50.000 0.00 0.00 0.00 3.69
3416 3529 3.262420 CGGATTCTGTCTGTTTGGGTAG 58.738 50.000 0.00 0.00 0.00 3.18
3417 3530 3.610911 GGATTCTGTCTGTTTGGGTAGG 58.389 50.000 0.00 0.00 0.00 3.18
3418 3531 3.610911 GATTCTGTCTGTTTGGGTAGGG 58.389 50.000 0.00 0.00 0.00 3.53
3419 3532 2.409064 TCTGTCTGTTTGGGTAGGGA 57.591 50.000 0.00 0.00 0.00 4.20
3420 3533 2.696775 TCTGTCTGTTTGGGTAGGGAA 58.303 47.619 0.00 0.00 0.00 3.97
3421 3534 3.050089 TCTGTCTGTTTGGGTAGGGAAA 58.950 45.455 0.00 0.00 0.00 3.13
3422 3535 3.655777 TCTGTCTGTTTGGGTAGGGAAAT 59.344 43.478 0.00 0.00 0.00 2.17
3423 3536 3.758554 CTGTCTGTTTGGGTAGGGAAATG 59.241 47.826 0.00 0.00 0.00 2.32
3424 3537 3.089284 GTCTGTTTGGGTAGGGAAATGG 58.911 50.000 0.00 0.00 0.00 3.16
3425 3538 2.042433 TCTGTTTGGGTAGGGAAATGGG 59.958 50.000 0.00 0.00 0.00 4.00
3426 3539 1.077993 TGTTTGGGTAGGGAAATGGGG 59.922 52.381 0.00 0.00 0.00 4.96
3427 3540 1.078159 GTTTGGGTAGGGAAATGGGGT 59.922 52.381 0.00 0.00 0.00 4.95
3428 3541 1.004436 TTGGGTAGGGAAATGGGGTC 58.996 55.000 0.00 0.00 0.00 4.46
3429 3542 1.276140 TGGGTAGGGAAATGGGGTCG 61.276 60.000 0.00 0.00 0.00 4.79
3430 3543 1.276859 GGGTAGGGAAATGGGGTCGT 61.277 60.000 0.00 0.00 0.00 4.34
3431 3544 0.107361 GGTAGGGAAATGGGGTCGTG 60.107 60.000 0.00 0.00 0.00 4.35
3432 3545 0.616891 GTAGGGAAATGGGGTCGTGT 59.383 55.000 0.00 0.00 0.00 4.49
3433 3546 0.906775 TAGGGAAATGGGGTCGTGTC 59.093 55.000 0.00 0.00 0.00 3.67
3434 3547 1.378119 GGGAAATGGGGTCGTGTCC 60.378 63.158 0.00 0.00 35.88 4.02
3435 3548 1.743995 GGAAATGGGGTCGTGTCCG 60.744 63.158 0.00 0.00 0.00 4.79
3436 3549 1.743995 GAAATGGGGTCGTGTCCGG 60.744 63.158 0.00 0.00 33.95 5.14
3437 3550 2.459202 GAAATGGGGTCGTGTCCGGT 62.459 60.000 0.00 0.00 33.95 5.28
3438 3551 2.459202 AAATGGGGTCGTGTCCGGTC 62.459 60.000 0.00 0.00 33.95 4.79
3439 3552 4.918278 TGGGGTCGTGTCCGGTCA 62.918 66.667 0.00 0.00 33.95 4.02
3440 3553 4.065281 GGGGTCGTGTCCGGTCAG 62.065 72.222 0.19 0.00 33.95 3.51
3441 3554 3.300765 GGGTCGTGTCCGGTCAGT 61.301 66.667 0.19 0.00 33.95 3.41
3442 3555 2.732658 GGTCGTGTCCGGTCAGTT 59.267 61.111 0.19 0.00 33.95 3.16
3443 3556 1.068585 GGTCGTGTCCGGTCAGTTT 59.931 57.895 0.19 0.00 33.95 2.66
3444 3557 0.942884 GGTCGTGTCCGGTCAGTTTC 60.943 60.000 0.19 0.00 33.95 2.78
3445 3558 0.031721 GTCGTGTCCGGTCAGTTTCT 59.968 55.000 0.19 0.00 33.95 2.52
3446 3559 1.267806 GTCGTGTCCGGTCAGTTTCTA 59.732 52.381 0.19 0.00 33.95 2.10
3447 3560 1.538512 TCGTGTCCGGTCAGTTTCTAG 59.461 52.381 0.19 0.00 33.95 2.43
3448 3561 1.402456 CGTGTCCGGTCAGTTTCTAGG 60.402 57.143 0.19 0.00 0.00 3.02
3449 3562 1.891150 GTGTCCGGTCAGTTTCTAGGA 59.109 52.381 0.19 0.00 0.00 2.94
3450 3563 2.496470 GTGTCCGGTCAGTTTCTAGGAT 59.504 50.000 0.19 0.00 0.00 3.24
3451 3564 2.496070 TGTCCGGTCAGTTTCTAGGATG 59.504 50.000 0.00 0.00 0.00 3.51
3452 3565 1.480954 TCCGGTCAGTTTCTAGGATGC 59.519 52.381 0.00 0.00 0.00 3.91
3453 3566 1.560923 CGGTCAGTTTCTAGGATGCG 58.439 55.000 0.00 0.00 0.00 4.73
3454 3567 1.802880 CGGTCAGTTTCTAGGATGCGG 60.803 57.143 0.00 0.00 0.00 5.69
3455 3568 1.207329 GGTCAGTTTCTAGGATGCGGT 59.793 52.381 0.00 0.00 0.00 5.68
3456 3569 2.271800 GTCAGTTTCTAGGATGCGGTG 58.728 52.381 0.00 0.00 0.00 4.94
3457 3570 1.207089 TCAGTTTCTAGGATGCGGTGG 59.793 52.381 0.00 0.00 0.00 4.61
3458 3571 0.107654 AGTTTCTAGGATGCGGTGGC 60.108 55.000 0.00 0.00 40.52 5.01
3459 3572 1.095807 GTTTCTAGGATGCGGTGGCC 61.096 60.000 0.00 0.00 38.85 5.36
3470 3583 3.771160 GGTGGCCGTCCGTCTGAT 61.771 66.667 0.00 0.00 34.14 2.90
3471 3584 2.509336 GTGGCCGTCCGTCTGATG 60.509 66.667 0.00 0.00 34.14 3.07
3472 3585 4.451150 TGGCCGTCCGTCTGATGC 62.451 66.667 0.00 0.00 34.14 3.91
3506 3619 2.954868 CGCATCCTGTCCGCGTAC 60.955 66.667 4.92 0.00 43.86 3.67
3507 3620 2.183300 GCATCCTGTCCGCGTACA 59.817 61.111 3.95 3.95 0.00 2.90
3508 3621 1.227263 GCATCCTGTCCGCGTACAT 60.227 57.895 4.55 0.00 0.00 2.29
3509 3622 0.810031 GCATCCTGTCCGCGTACATT 60.810 55.000 4.55 0.00 0.00 2.71
3510 3623 1.651987 CATCCTGTCCGCGTACATTT 58.348 50.000 4.55 0.00 0.00 2.32
3511 3624 2.006888 CATCCTGTCCGCGTACATTTT 58.993 47.619 4.55 0.00 0.00 1.82
3512 3625 2.172851 TCCTGTCCGCGTACATTTTT 57.827 45.000 4.55 0.00 0.00 1.94
3513 3626 2.070783 TCCTGTCCGCGTACATTTTTC 58.929 47.619 4.55 0.00 0.00 2.29
3514 3627 2.073816 CCTGTCCGCGTACATTTTTCT 58.926 47.619 4.55 0.00 0.00 2.52
3515 3628 2.482721 CCTGTCCGCGTACATTTTTCTT 59.517 45.455 4.55 0.00 0.00 2.52
3516 3629 3.058501 CCTGTCCGCGTACATTTTTCTTT 60.059 43.478 4.55 0.00 0.00 2.52
3517 3630 3.879427 TGTCCGCGTACATTTTTCTTTG 58.121 40.909 0.00 0.00 0.00 2.77
3518 3631 2.655001 GTCCGCGTACATTTTTCTTTGC 59.345 45.455 4.92 0.00 0.00 3.68
3519 3632 2.290916 TCCGCGTACATTTTTCTTTGCA 59.709 40.909 4.92 0.00 0.00 4.08
3520 3633 3.046390 CCGCGTACATTTTTCTTTGCAA 58.954 40.909 4.92 0.00 0.00 4.08
3521 3634 3.119463 CCGCGTACATTTTTCTTTGCAAG 59.881 43.478 4.92 0.00 0.00 4.01
3522 3635 3.728718 CGCGTACATTTTTCTTTGCAAGT 59.271 39.130 0.00 0.00 0.00 3.16
3523 3636 4.143824 CGCGTACATTTTTCTTTGCAAGTC 60.144 41.667 0.00 0.00 0.00 3.01
3524 3637 4.148174 GCGTACATTTTTCTTTGCAAGTCC 59.852 41.667 0.00 0.00 0.00 3.85
3525 3638 5.277825 CGTACATTTTTCTTTGCAAGTCCA 58.722 37.500 0.00 0.00 0.00 4.02
3526 3639 5.920273 CGTACATTTTTCTTTGCAAGTCCAT 59.080 36.000 0.00 0.00 0.00 3.41
3527 3640 7.081349 CGTACATTTTTCTTTGCAAGTCCATA 58.919 34.615 0.00 0.00 0.00 2.74
3528 3641 7.593273 CGTACATTTTTCTTTGCAAGTCCATAA 59.407 33.333 0.00 0.00 0.00 1.90
3529 3642 9.423061 GTACATTTTTCTTTGCAAGTCCATAAT 57.577 29.630 0.00 0.00 0.00 1.28
3530 3643 8.907222 ACATTTTTCTTTGCAAGTCCATAATT 57.093 26.923 0.00 0.00 0.00 1.40
3531 3644 9.341078 ACATTTTTCTTTGCAAGTCCATAATTT 57.659 25.926 0.00 0.00 0.00 1.82
3609 3722 9.990360 AAAAAGTAAGACCAAAGAAAACAAGAA 57.010 25.926 0.00 0.00 0.00 2.52
3610 3723 8.981724 AAAGTAAGACCAAAGAAAACAAGAAC 57.018 30.769 0.00 0.00 0.00 3.01
3611 3724 7.096884 AGTAAGACCAAAGAAAACAAGAACC 57.903 36.000 0.00 0.00 0.00 3.62
3612 3725 5.993748 AAGACCAAAGAAAACAAGAACCA 57.006 34.783 0.00 0.00 0.00 3.67
3613 3726 5.324784 AGACCAAAGAAAACAAGAACCAC 57.675 39.130 0.00 0.00 0.00 4.16
3614 3727 4.770010 AGACCAAAGAAAACAAGAACCACA 59.230 37.500 0.00 0.00 0.00 4.17
3615 3728 5.245075 AGACCAAAGAAAACAAGAACCACAA 59.755 36.000 0.00 0.00 0.00 3.33
3616 3729 5.478407 ACCAAAGAAAACAAGAACCACAAG 58.522 37.500 0.00 0.00 0.00 3.16
3617 3730 5.245075 ACCAAAGAAAACAAGAACCACAAGA 59.755 36.000 0.00 0.00 0.00 3.02
3618 3731 6.162777 CCAAAGAAAACAAGAACCACAAGAA 58.837 36.000 0.00 0.00 0.00 2.52
3619 3732 6.818142 CCAAAGAAAACAAGAACCACAAGAAT 59.182 34.615 0.00 0.00 0.00 2.40
3620 3733 7.978975 CCAAAGAAAACAAGAACCACAAGAATA 59.021 33.333 0.00 0.00 0.00 1.75
3621 3734 8.807581 CAAAGAAAACAAGAACCACAAGAATAC 58.192 33.333 0.00 0.00 0.00 1.89
3622 3735 7.639113 AGAAAACAAGAACCACAAGAATACA 57.361 32.000 0.00 0.00 0.00 2.29
3623 3736 8.237811 AGAAAACAAGAACCACAAGAATACAT 57.762 30.769 0.00 0.00 0.00 2.29
3624 3737 8.695456 AGAAAACAAGAACCACAAGAATACATT 58.305 29.630 0.00 0.00 0.00 2.71
3625 3738 9.313118 GAAAACAAGAACCACAAGAATACATTT 57.687 29.630 0.00 0.00 0.00 2.32
3626 3739 9.665719 AAAACAAGAACCACAAGAATACATTTT 57.334 25.926 0.00 0.00 0.00 1.82
3628 3741 9.965824 AACAAGAACCACAAGAATACATTTTAG 57.034 29.630 0.00 0.00 0.00 1.85
3629 3742 9.349713 ACAAGAACCACAAGAATACATTTTAGA 57.650 29.630 0.00 0.00 0.00 2.10
3632 3745 9.793259 AGAACCACAAGAATACATTTTAGAAGA 57.207 29.630 0.00 0.00 0.00 2.87
3646 3759 9.927081 ACATTTTAGAAGATATCCAACTTCCAT 57.073 29.630 0.00 0.00 42.09 3.41
3653 3766 9.440761 AGAAGATATCCAACTTCCATAACTACT 57.559 33.333 0.00 0.00 42.09 2.57
3654 3767 9.699703 GAAGATATCCAACTTCCATAACTACTC 57.300 37.037 0.00 0.00 37.22 2.59
3655 3768 8.196378 AGATATCCAACTTCCATAACTACTCC 57.804 38.462 0.00 0.00 0.00 3.85
3656 3769 8.013667 AGATATCCAACTTCCATAACTACTCCT 58.986 37.037 0.00 0.00 0.00 3.69
3657 3770 5.677319 TCCAACTTCCATAACTACTCCTG 57.323 43.478 0.00 0.00 0.00 3.86
3658 3771 5.091552 TCCAACTTCCATAACTACTCCTGT 58.908 41.667 0.00 0.00 0.00 4.00
3659 3772 6.258354 TCCAACTTCCATAACTACTCCTGTA 58.742 40.000 0.00 0.00 0.00 2.74
3660 3773 6.727231 TCCAACTTCCATAACTACTCCTGTAA 59.273 38.462 0.00 0.00 0.00 2.41
3661 3774 7.042335 CCAACTTCCATAACTACTCCTGTAAG 58.958 42.308 0.00 0.00 0.00 2.34
3662 3775 7.310485 CCAACTTCCATAACTACTCCTGTAAGT 60.310 40.741 0.00 0.00 0.00 2.24
3663 3776 7.793948 ACTTCCATAACTACTCCTGTAAGTT 57.206 36.000 0.00 0.00 0.00 2.66
3664 3777 7.612677 ACTTCCATAACTACTCCTGTAAGTTG 58.387 38.462 0.00 0.00 0.00 3.16
3665 3778 6.540438 TCCATAACTACTCCTGTAAGTTGG 57.460 41.667 0.00 0.00 0.00 3.77
3666 3779 6.258354 TCCATAACTACTCCTGTAAGTTGGA 58.742 40.000 0.00 0.00 0.00 3.53
3667 3780 6.901300 TCCATAACTACTCCTGTAAGTTGGAT 59.099 38.462 0.00 0.00 0.00 3.41
3668 3781 7.402071 TCCATAACTACTCCTGTAAGTTGGATT 59.598 37.037 0.00 0.00 0.00 3.01
3669 3782 8.701895 CCATAACTACTCCTGTAAGTTGGATTA 58.298 37.037 0.00 0.00 0.00 1.75
3670 3783 9.751542 CATAACTACTCCTGTAAGTTGGATTAG 57.248 37.037 0.00 0.00 39.79 1.73
3671 3784 7.793948 AACTACTCCTGTAAGTTGGATTAGT 57.206 36.000 6.32 6.32 44.96 2.24
3672 3785 7.171630 ACTACTCCTGTAAGTTGGATTAGTG 57.828 40.000 10.02 0.00 42.96 2.74
3673 3786 4.833390 ACTCCTGTAAGTTGGATTAGTGC 58.167 43.478 0.00 0.00 0.00 4.40
3674 3787 4.192317 CTCCTGTAAGTTGGATTAGTGCC 58.808 47.826 0.00 0.00 0.00 5.01
3675 3788 3.844211 TCCTGTAAGTTGGATTAGTGCCT 59.156 43.478 0.00 0.00 0.00 4.75
3676 3789 4.288626 TCCTGTAAGTTGGATTAGTGCCTT 59.711 41.667 0.00 0.00 0.00 4.35
3677 3790 4.636206 CCTGTAAGTTGGATTAGTGCCTTC 59.364 45.833 0.00 0.00 0.00 3.46
3678 3791 5.491982 CTGTAAGTTGGATTAGTGCCTTCT 58.508 41.667 0.00 0.00 0.00 2.85
3679 3792 5.488341 TGTAAGTTGGATTAGTGCCTTCTC 58.512 41.667 0.00 0.00 0.00 2.87
3680 3793 3.252974 AGTTGGATTAGTGCCTTCTCG 57.747 47.619 0.00 0.00 0.00 4.04
3681 3794 2.832129 AGTTGGATTAGTGCCTTCTCGA 59.168 45.455 0.00 0.00 0.00 4.04
3682 3795 3.452627 AGTTGGATTAGTGCCTTCTCGAT 59.547 43.478 0.00 0.00 0.00 3.59
3683 3796 3.459232 TGGATTAGTGCCTTCTCGATG 57.541 47.619 0.00 0.00 0.00 3.84
3684 3797 2.139118 GGATTAGTGCCTTCTCGATGC 58.861 52.381 0.00 0.00 0.00 3.91
3685 3798 2.483714 GGATTAGTGCCTTCTCGATGCA 60.484 50.000 0.00 0.00 0.00 3.96
3686 3799 2.988010 TTAGTGCCTTCTCGATGCAT 57.012 45.000 0.00 0.00 37.34 3.96
3687 3800 2.988010 TAGTGCCTTCTCGATGCATT 57.012 45.000 0.00 2.14 37.34 3.56
3688 3801 1.661341 AGTGCCTTCTCGATGCATTC 58.339 50.000 0.00 0.00 37.34 2.67
3689 3802 1.065926 AGTGCCTTCTCGATGCATTCA 60.066 47.619 0.00 0.00 37.34 2.57
3690 3803 1.945394 GTGCCTTCTCGATGCATTCAT 59.055 47.619 0.00 0.00 37.34 2.57
3691 3804 2.357009 GTGCCTTCTCGATGCATTCATT 59.643 45.455 0.00 0.00 37.34 2.57
3692 3805 2.356695 TGCCTTCTCGATGCATTCATTG 59.643 45.455 0.00 0.00 35.77 2.82
3693 3806 2.357009 GCCTTCTCGATGCATTCATTGT 59.643 45.455 0.00 0.00 35.89 2.71
3694 3807 3.181493 GCCTTCTCGATGCATTCATTGTT 60.181 43.478 0.00 0.00 35.89 2.83
3695 3808 4.348656 CCTTCTCGATGCATTCATTGTTG 58.651 43.478 0.00 0.00 35.89 3.33
3696 3809 4.095334 CCTTCTCGATGCATTCATTGTTGA 59.905 41.667 0.00 0.00 35.89 3.18
3697 3810 5.220989 CCTTCTCGATGCATTCATTGTTGAT 60.221 40.000 0.00 0.00 35.89 2.57
3698 3811 5.413969 TCTCGATGCATTCATTGTTGATC 57.586 39.130 0.00 0.00 35.89 2.92
3699 3812 5.121105 TCTCGATGCATTCATTGTTGATCT 58.879 37.500 0.00 0.00 35.89 2.75
3700 3813 5.007332 TCTCGATGCATTCATTGTTGATCTG 59.993 40.000 0.00 0.00 35.89 2.90
3701 3814 3.729217 CGATGCATTCATTGTTGATCTGC 59.271 43.478 0.00 0.00 39.52 4.26
3702 3815 3.139603 TGCATTCATTGTTGATCTGCG 57.860 42.857 0.00 0.00 40.83 5.18
3703 3816 2.159352 TGCATTCATTGTTGATCTGCGG 60.159 45.455 0.00 0.00 40.83 5.69
3704 3817 2.097954 GCATTCATTGTTGATCTGCGGA 59.902 45.455 0.00 0.00 33.73 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.458951 TGACCACACGTACGTTTACAC 58.541 47.619 20.23 11.00 0.00 2.90
40 41 3.096495 ATACATGGGCCGGCCTGT 61.096 61.111 42.70 38.20 36.10 4.00
254 259 7.928908 TCGTGAATTTGGAAAAGAAATCAAG 57.071 32.000 0.00 0.00 0.00 3.02
314 319 1.750193 TGGGGATGAGAAATGTTCGC 58.250 50.000 0.00 0.00 34.02 4.70
315 320 3.347216 AGTTGGGGATGAGAAATGTTCG 58.653 45.455 0.00 0.00 34.02 3.95
324 329 9.336171 TGAAATTTTTAAAAAGTTGGGGATGAG 57.664 29.630 25.90 0.00 36.46 2.90
325 330 9.859152 ATGAAATTTTTAAAAAGTTGGGGATGA 57.141 25.926 25.90 1.26 36.46 2.92
329 334 9.729023 GTTCATGAAATTTTTAAAAAGTTGGGG 57.271 29.630 25.90 15.92 36.46 4.96
356 361 4.090761 AGAGCTCATGTGTTTGGAGAAA 57.909 40.909 17.77 0.00 0.00 2.52
389 394 7.671827 TGTCATTATTTGTCGACATAAGTTCG 58.328 34.615 20.80 6.04 33.61 3.95
468 476 4.363138 TGCGAGATGTTACATCATGAGAC 58.637 43.478 24.79 10.01 0.00 3.36
708 718 5.049060 CGACACAATGGAAGAATAACAACCA 60.049 40.000 0.00 0.00 35.09 3.67
746 756 5.086104 TCTCCAATCCCGAAAGAAACTAG 57.914 43.478 0.00 0.00 0.00 2.57
747 757 5.492855 TTCTCCAATCCCGAAAGAAACTA 57.507 39.130 0.00 0.00 0.00 2.24
748 758 4.367039 TTCTCCAATCCCGAAAGAAACT 57.633 40.909 0.00 0.00 0.00 2.66
749 759 4.944317 AGATTCTCCAATCCCGAAAGAAAC 59.056 41.667 0.00 0.00 39.58 2.78
757 767 3.070159 TCTTGCTAGATTCTCCAATCCCG 59.930 47.826 0.00 0.00 39.58 5.14
768 778 3.887716 GCCAATGTGGATCTTGCTAGATT 59.112 43.478 12.02 0.00 41.23 2.40
821 831 5.508200 AGACGATCTGATCCAGAACTAAC 57.492 43.478 11.84 0.00 44.04 2.34
844 854 4.092968 GGATCAACGAGTACAATGTGGAAC 59.907 45.833 0.00 0.00 37.35 3.62
882 895 3.354948 TCAACACATCCTCCAATCCAG 57.645 47.619 0.00 0.00 0.00 3.86
883 896 3.682436 CGATCAACACATCCTCCAATCCA 60.682 47.826 0.00 0.00 0.00 3.41
920 933 0.179084 ATGGACGTACGCATTCCCAG 60.179 55.000 16.72 0.00 0.00 4.45
970 983 2.660206 CCGGACACGATGGGTTGA 59.340 61.111 0.00 0.00 44.60 3.18
1110 1129 1.860676 CGGGAGACGTGAAAAGTGAA 58.139 50.000 0.00 0.00 37.93 3.18
1111 1130 3.580904 CGGGAGACGTGAAAAGTGA 57.419 52.632 0.00 0.00 37.93 3.41
1287 1328 2.579201 CGATGAGGGCCTTGTCGT 59.421 61.111 24.69 9.12 0.00 4.34
1432 1473 6.096564 CGGATATTCAGATGAGAGGATGATGA 59.903 42.308 0.00 0.00 0.00 2.92
1484 1533 9.683069 CCAATATATTTGACCAGATTAACTTGC 57.317 33.333 0.00 0.00 0.00 4.01
1802 1871 1.542492 CACTCCTTTCTTGCCTGCAT 58.458 50.000 0.00 0.00 0.00 3.96
1992 2061 2.618709 CTGGTTTGTCAGGTTGAAGTCC 59.381 50.000 0.00 0.00 0.00 3.85
2564 2652 1.642952 GCCACTGCTGCTAGCTGAAC 61.643 60.000 24.19 8.78 41.94 3.18
2635 2723 4.301505 GGCTGAATCGCCTTCACA 57.698 55.556 8.46 0.00 46.63 3.58
2867 2959 5.121768 CCTCCTGTTTAATTTGTCTACACGG 59.878 44.000 0.00 0.00 0.00 4.94
2887 2979 7.013369 ACAAAGTACATTCTTTTCTGTTCCTCC 59.987 37.037 0.00 0.00 35.77 4.30
2888 2980 7.931275 ACAAAGTACATTCTTTTCTGTTCCTC 58.069 34.615 0.00 0.00 35.77 3.71
2889 2981 7.881775 ACAAAGTACATTCTTTTCTGTTCCT 57.118 32.000 0.00 0.00 35.77 3.36
2976 3088 7.044249 CGTCTCGTTACTCATTACTTATGTTGG 60.044 40.741 0.00 0.00 35.64 3.77
2985 3097 7.404985 TGTATCTTCGTCTCGTTACTCATTAC 58.595 38.462 0.00 0.00 0.00 1.89
2986 3098 7.543947 TGTATCTTCGTCTCGTTACTCATTA 57.456 36.000 0.00 0.00 0.00 1.90
2987 3099 6.432607 TGTATCTTCGTCTCGTTACTCATT 57.567 37.500 0.00 0.00 0.00 2.57
2988 3100 6.260271 TCATGTATCTTCGTCTCGTTACTCAT 59.740 38.462 0.00 0.00 0.00 2.90
2989 3101 5.583457 TCATGTATCTTCGTCTCGTTACTCA 59.417 40.000 0.00 0.00 0.00 3.41
2990 3102 6.018913 TCTCATGTATCTTCGTCTCGTTACTC 60.019 42.308 0.00 0.00 0.00 2.59
2991 3103 5.816258 TCTCATGTATCTTCGTCTCGTTACT 59.184 40.000 0.00 0.00 0.00 2.24
3073 3185 4.318546 GGACACTACGACAACAATTGTGAC 60.319 45.833 12.82 5.91 45.52 3.67
3177 3290 0.037734 CTCCGCCACTAAAGGGGTTT 59.962 55.000 0.00 0.00 39.79 3.27
3191 3304 4.785453 CTTGGGGCCTGTCTCCGC 62.785 72.222 0.84 0.00 37.10 5.54
3192 3305 4.785453 GCTTGGGGCCTGTCTCCG 62.785 72.222 0.84 0.00 34.27 4.63
3193 3306 3.635268 CTGCTTGGGGCCTGTCTCC 62.635 68.421 0.84 0.00 40.92 3.71
3194 3307 2.045536 CTGCTTGGGGCCTGTCTC 60.046 66.667 0.84 0.00 40.92 3.36
3195 3308 4.357279 GCTGCTTGGGGCCTGTCT 62.357 66.667 0.84 0.00 40.92 3.41
3224 3337 4.748144 GTGCCCTCAAGCCCCAGG 62.748 72.222 0.00 0.00 0.00 4.45
3225 3338 2.720144 AAAGTGCCCTCAAGCCCCAG 62.720 60.000 0.00 0.00 0.00 4.45
3226 3339 2.713531 GAAAGTGCCCTCAAGCCCCA 62.714 60.000 0.00 0.00 0.00 4.96
3227 3340 1.979155 GAAAGTGCCCTCAAGCCCC 60.979 63.158 0.00 0.00 0.00 5.80
3228 3341 1.979155 GGAAAGTGCCCTCAAGCCC 60.979 63.158 0.00 0.00 0.00 5.19
3229 3342 0.540597 AAGGAAAGTGCCCTCAAGCC 60.541 55.000 0.00 0.00 32.57 4.35
3230 3343 1.000171 CAAAGGAAAGTGCCCTCAAGC 60.000 52.381 0.00 0.00 32.57 4.01
3231 3344 2.310538 ACAAAGGAAAGTGCCCTCAAG 58.689 47.619 0.00 0.00 32.57 3.02
3232 3345 2.452600 ACAAAGGAAAGTGCCCTCAA 57.547 45.000 0.00 0.00 32.57 3.02
3233 3346 2.306847 GAACAAAGGAAAGTGCCCTCA 58.693 47.619 0.00 0.00 32.57 3.86
3234 3347 2.306847 TGAACAAAGGAAAGTGCCCTC 58.693 47.619 0.00 0.00 32.57 4.30
3235 3348 2.452600 TGAACAAAGGAAAGTGCCCT 57.547 45.000 0.00 0.00 35.03 5.19
3236 3349 3.826729 AGTATGAACAAAGGAAAGTGCCC 59.173 43.478 0.00 0.00 0.00 5.36
3237 3350 5.009610 TGAAGTATGAACAAAGGAAAGTGCC 59.990 40.000 0.00 0.00 0.00 5.01
3238 3351 6.072112 TGAAGTATGAACAAAGGAAAGTGC 57.928 37.500 0.00 0.00 0.00 4.40
3239 3352 9.003658 ACTATGAAGTATGAACAAAGGAAAGTG 57.996 33.333 0.00 0.00 32.84 3.16
3263 3376 9.530633 GCATTGTAGCTACAGTATTTTACTACT 57.469 33.333 24.79 0.00 37.23 2.57
3264 3377 9.530633 AGCATTGTAGCTACAGTATTTTACTAC 57.469 33.333 24.79 7.17 44.50 2.73
3278 3391 3.767131 TGGTCACTGTAGCATTGTAGCTA 59.233 43.478 0.00 0.00 44.50 3.32
3280 3393 2.972625 TGGTCACTGTAGCATTGTAGC 58.027 47.619 0.00 0.00 0.00 3.58
3281 3394 4.393062 CCTTTGGTCACTGTAGCATTGTAG 59.607 45.833 0.00 0.00 0.00 2.74
3282 3395 4.323417 CCTTTGGTCACTGTAGCATTGTA 58.677 43.478 0.00 0.00 0.00 2.41
3283 3396 3.149196 CCTTTGGTCACTGTAGCATTGT 58.851 45.455 0.00 0.00 0.00 2.71
3284 3397 2.095059 GCCTTTGGTCACTGTAGCATTG 60.095 50.000 0.00 0.00 0.00 2.82
3285 3398 2.162681 GCCTTTGGTCACTGTAGCATT 58.837 47.619 0.00 0.00 0.00 3.56
3286 3399 1.352352 AGCCTTTGGTCACTGTAGCAT 59.648 47.619 0.00 0.00 0.00 3.79
3287 3400 0.764890 AGCCTTTGGTCACTGTAGCA 59.235 50.000 0.00 0.00 0.00 3.49
3288 3401 1.160137 CAGCCTTTGGTCACTGTAGC 58.840 55.000 0.00 0.00 0.00 3.58
3289 3402 1.160137 GCAGCCTTTGGTCACTGTAG 58.840 55.000 0.00 0.00 32.65 2.74
3290 3403 0.250727 GGCAGCCTTTGGTCACTGTA 60.251 55.000 3.29 0.00 32.65 2.74
3291 3404 1.529244 GGCAGCCTTTGGTCACTGT 60.529 57.895 3.29 0.00 32.65 3.55
3292 3405 0.036732 TAGGCAGCCTTTGGTCACTG 59.963 55.000 22.26 0.00 34.61 3.66
3293 3406 0.326264 CTAGGCAGCCTTTGGTCACT 59.674 55.000 22.26 0.00 34.61 3.41
3294 3407 0.678048 CCTAGGCAGCCTTTGGTCAC 60.678 60.000 22.26 0.00 34.61 3.67
3295 3408 0.840288 TCCTAGGCAGCCTTTGGTCA 60.840 55.000 22.26 4.92 34.61 4.02
3296 3409 0.393132 GTCCTAGGCAGCCTTTGGTC 60.393 60.000 22.26 15.87 34.61 4.02
3297 3410 1.685820 GTCCTAGGCAGCCTTTGGT 59.314 57.895 22.26 0.00 34.61 3.67
3298 3411 1.450312 CGTCCTAGGCAGCCTTTGG 60.450 63.158 22.26 21.69 34.61 3.28
3299 3412 1.450312 CCGTCCTAGGCAGCCTTTG 60.450 63.158 22.26 13.15 34.61 2.77
3300 3413 2.990479 CCGTCCTAGGCAGCCTTT 59.010 61.111 22.26 0.00 34.61 3.11
3318 3431 0.673333 GAATTTTGCAAAGCCCCCGG 60.673 55.000 12.41 0.00 0.00 5.73
3319 3432 0.321346 AGAATTTTGCAAAGCCCCCG 59.679 50.000 12.41 0.00 0.00 5.73
3320 3433 2.677902 GCTAGAATTTTGCAAAGCCCCC 60.678 50.000 12.41 2.01 0.00 5.40
3321 3434 2.621338 GCTAGAATTTTGCAAAGCCCC 58.379 47.619 12.41 3.71 0.00 5.80
3322 3435 2.262211 CGCTAGAATTTTGCAAAGCCC 58.738 47.619 12.41 5.43 0.00 5.19
3323 3436 1.655597 GCGCTAGAATTTTGCAAAGCC 59.344 47.619 12.41 5.78 0.00 4.35
3324 3437 1.655597 GGCGCTAGAATTTTGCAAAGC 59.344 47.619 12.41 10.08 0.00 3.51
3325 3438 2.663119 GTGGCGCTAGAATTTTGCAAAG 59.337 45.455 12.41 0.23 0.00 2.77
3326 3439 2.295909 AGTGGCGCTAGAATTTTGCAAA 59.704 40.909 8.05 8.05 0.00 3.68
3327 3440 1.885887 AGTGGCGCTAGAATTTTGCAA 59.114 42.857 7.64 0.00 0.00 4.08
3328 3441 1.533625 AGTGGCGCTAGAATTTTGCA 58.466 45.000 7.64 0.00 0.00 4.08
3329 3442 2.636768 AAGTGGCGCTAGAATTTTGC 57.363 45.000 7.64 0.00 0.00 3.68
3330 3443 5.095490 CCTAAAAGTGGCGCTAGAATTTTG 58.905 41.667 7.64 4.06 0.00 2.44
3331 3444 4.380550 GCCTAAAAGTGGCGCTAGAATTTT 60.381 41.667 7.64 11.44 41.03 1.82
3332 3445 3.128764 GCCTAAAAGTGGCGCTAGAATTT 59.871 43.478 7.64 5.49 41.03 1.82
3333 3446 2.683362 GCCTAAAAGTGGCGCTAGAATT 59.317 45.455 7.64 0.00 41.03 2.17
3334 3447 2.289565 GCCTAAAAGTGGCGCTAGAAT 58.710 47.619 7.64 0.00 41.03 2.40
3335 3448 1.734163 GCCTAAAAGTGGCGCTAGAA 58.266 50.000 7.64 0.00 41.03 2.10
3336 3449 3.453559 GCCTAAAAGTGGCGCTAGA 57.546 52.632 7.64 0.00 41.03 2.43
3343 3456 2.162681 CTGGAGTTGGCCTAAAAGTGG 58.837 52.381 3.32 0.00 0.00 4.00
3344 3457 1.541588 GCTGGAGTTGGCCTAAAAGTG 59.458 52.381 3.32 0.00 0.00 3.16
3345 3458 1.882352 CGCTGGAGTTGGCCTAAAAGT 60.882 52.381 3.32 0.00 0.00 2.66
3346 3459 0.804989 CGCTGGAGTTGGCCTAAAAG 59.195 55.000 3.32 0.00 0.00 2.27
3347 3460 1.241315 GCGCTGGAGTTGGCCTAAAA 61.241 55.000 3.32 0.00 0.00 1.52
3348 3461 1.674322 GCGCTGGAGTTGGCCTAAA 60.674 57.895 3.32 0.00 0.00 1.85
3349 3462 2.046314 GCGCTGGAGTTGGCCTAA 60.046 61.111 3.32 0.00 0.00 2.69
3350 3463 3.318384 TGCGCTGGAGTTGGCCTA 61.318 61.111 9.73 0.00 0.00 3.93
3354 3467 2.434884 ATCGTGCGCTGGAGTTGG 60.435 61.111 9.73 0.00 0.00 3.77
3355 3468 2.456119 GGATCGTGCGCTGGAGTTG 61.456 63.158 9.73 0.00 0.00 3.16
3356 3469 2.125512 GGATCGTGCGCTGGAGTT 60.126 61.111 9.73 0.00 0.00 3.01
3357 3470 4.148825 GGGATCGTGCGCTGGAGT 62.149 66.667 9.73 0.00 0.00 3.85
3358 3471 3.664025 TTGGGATCGTGCGCTGGAG 62.664 63.158 9.73 0.00 0.00 3.86
3359 3472 3.247056 TTTGGGATCGTGCGCTGGA 62.247 57.895 9.73 6.14 0.00 3.86
3360 3473 2.745884 TTTGGGATCGTGCGCTGG 60.746 61.111 9.73 0.00 0.00 4.85
3361 3474 2.480555 GTTTGGGATCGTGCGCTG 59.519 61.111 9.73 0.40 0.00 5.18
3362 3475 3.118454 CGTTTGGGATCGTGCGCT 61.118 61.111 9.73 0.00 0.00 5.92
3363 3476 4.160635 CCGTTTGGGATCGTGCGC 62.161 66.667 0.00 0.00 38.47 6.09
3364 3477 2.433491 TCCGTTTGGGATCGTGCG 60.433 61.111 0.00 0.00 40.94 5.34
3379 3492 2.507769 CGGGCTAAACGGACGTCC 60.508 66.667 25.28 25.28 0.00 4.79
3386 3499 1.134788 AGACAGAATCCGGGCTAAACG 60.135 52.381 0.00 0.00 0.00 3.60
3387 3500 2.280628 CAGACAGAATCCGGGCTAAAC 58.719 52.381 0.00 0.00 0.00 2.01
3388 3501 1.906574 ACAGACAGAATCCGGGCTAAA 59.093 47.619 0.00 0.00 0.00 1.85
3389 3502 1.568504 ACAGACAGAATCCGGGCTAA 58.431 50.000 0.00 0.00 0.00 3.09
3390 3503 1.568504 AACAGACAGAATCCGGGCTA 58.431 50.000 0.00 0.00 0.00 3.93
3391 3504 0.693049 AAACAGACAGAATCCGGGCT 59.307 50.000 0.00 0.00 0.00 5.19
3392 3505 0.804989 CAAACAGACAGAATCCGGGC 59.195 55.000 0.00 0.00 0.00 6.13
3393 3506 1.453155 CCAAACAGACAGAATCCGGG 58.547 55.000 0.00 0.00 0.00 5.73
3394 3507 1.271379 ACCCAAACAGACAGAATCCGG 60.271 52.381 0.00 0.00 0.00 5.14
3395 3508 2.185004 ACCCAAACAGACAGAATCCG 57.815 50.000 0.00 0.00 0.00 4.18
3396 3509 3.610911 CCTACCCAAACAGACAGAATCC 58.389 50.000 0.00 0.00 0.00 3.01
3397 3510 3.263425 TCCCTACCCAAACAGACAGAATC 59.737 47.826 0.00 0.00 0.00 2.52
3398 3511 3.256704 TCCCTACCCAAACAGACAGAAT 58.743 45.455 0.00 0.00 0.00 2.40
3399 3512 2.696775 TCCCTACCCAAACAGACAGAA 58.303 47.619 0.00 0.00 0.00 3.02
3400 3513 2.409064 TCCCTACCCAAACAGACAGA 57.591 50.000 0.00 0.00 0.00 3.41
3401 3514 3.502123 TTTCCCTACCCAAACAGACAG 57.498 47.619 0.00 0.00 0.00 3.51
3402 3515 3.499563 CCATTTCCCTACCCAAACAGACA 60.500 47.826 0.00 0.00 0.00 3.41
3403 3516 3.089284 CCATTTCCCTACCCAAACAGAC 58.911 50.000 0.00 0.00 0.00 3.51
3404 3517 2.042433 CCCATTTCCCTACCCAAACAGA 59.958 50.000 0.00 0.00 0.00 3.41
3405 3518 2.456577 CCCATTTCCCTACCCAAACAG 58.543 52.381 0.00 0.00 0.00 3.16
3406 3519 1.077993 CCCCATTTCCCTACCCAAACA 59.922 52.381 0.00 0.00 0.00 2.83
3407 3520 1.078159 ACCCCATTTCCCTACCCAAAC 59.922 52.381 0.00 0.00 0.00 2.93
3408 3521 1.359818 GACCCCATTTCCCTACCCAAA 59.640 52.381 0.00 0.00 0.00 3.28
3409 3522 1.004436 GACCCCATTTCCCTACCCAA 58.996 55.000 0.00 0.00 0.00 4.12
3410 3523 1.276140 CGACCCCATTTCCCTACCCA 61.276 60.000 0.00 0.00 0.00 4.51
3411 3524 1.276859 ACGACCCCATTTCCCTACCC 61.277 60.000 0.00 0.00 0.00 3.69
3412 3525 0.107361 CACGACCCCATTTCCCTACC 60.107 60.000 0.00 0.00 0.00 3.18
3413 3526 0.616891 ACACGACCCCATTTCCCTAC 59.383 55.000 0.00 0.00 0.00 3.18
3414 3527 0.906775 GACACGACCCCATTTCCCTA 59.093 55.000 0.00 0.00 0.00 3.53
3415 3528 1.683441 GACACGACCCCATTTCCCT 59.317 57.895 0.00 0.00 0.00 4.20
3416 3529 1.378119 GGACACGACCCCATTTCCC 60.378 63.158 0.00 0.00 0.00 3.97
3417 3530 1.743995 CGGACACGACCCCATTTCC 60.744 63.158 0.00 0.00 44.60 3.13
3418 3531 1.743995 CCGGACACGACCCCATTTC 60.744 63.158 0.00 0.00 44.60 2.17
3419 3532 2.349755 CCGGACACGACCCCATTT 59.650 61.111 0.00 0.00 44.60 2.32
3420 3533 2.926242 ACCGGACACGACCCCATT 60.926 61.111 9.46 0.00 44.60 3.16
3421 3534 3.387947 GACCGGACACGACCCCAT 61.388 66.667 9.46 0.00 44.60 4.00
3422 3535 4.918278 TGACCGGACACGACCCCA 62.918 66.667 9.46 0.00 44.60 4.96
3423 3536 4.065281 CTGACCGGACACGACCCC 62.065 72.222 9.46 0.00 44.60 4.95
3424 3537 2.373434 AAACTGACCGGACACGACCC 62.373 60.000 9.46 0.00 44.60 4.46
3425 3538 0.942884 GAAACTGACCGGACACGACC 60.943 60.000 9.46 0.00 44.60 4.79
3426 3539 0.031721 AGAAACTGACCGGACACGAC 59.968 55.000 9.46 0.00 44.60 4.34
3427 3540 1.538512 CTAGAAACTGACCGGACACGA 59.461 52.381 9.46 0.00 44.60 4.35
3428 3541 1.402456 CCTAGAAACTGACCGGACACG 60.402 57.143 9.46 5.09 40.55 4.49
3429 3542 1.891150 TCCTAGAAACTGACCGGACAC 59.109 52.381 9.46 0.00 0.00 3.67
3430 3543 2.297698 TCCTAGAAACTGACCGGACA 57.702 50.000 9.46 7.70 0.00 4.02
3431 3544 2.738964 GCATCCTAGAAACTGACCGGAC 60.739 54.545 9.46 1.07 0.00 4.79
3432 3545 1.480954 GCATCCTAGAAACTGACCGGA 59.519 52.381 9.46 0.00 0.00 5.14
3433 3546 1.802880 CGCATCCTAGAAACTGACCGG 60.803 57.143 0.00 0.00 0.00 5.28
3434 3547 1.560923 CGCATCCTAGAAACTGACCG 58.439 55.000 0.00 0.00 0.00 4.79
3435 3548 1.207329 ACCGCATCCTAGAAACTGACC 59.793 52.381 0.00 0.00 0.00 4.02
3436 3549 2.271800 CACCGCATCCTAGAAACTGAC 58.728 52.381 0.00 0.00 0.00 3.51
3437 3550 1.207089 CCACCGCATCCTAGAAACTGA 59.793 52.381 0.00 0.00 0.00 3.41
3438 3551 1.656652 CCACCGCATCCTAGAAACTG 58.343 55.000 0.00 0.00 0.00 3.16
3439 3552 0.107654 GCCACCGCATCCTAGAAACT 60.108 55.000 0.00 0.00 34.03 2.66
3440 3553 1.095807 GGCCACCGCATCCTAGAAAC 61.096 60.000 0.00 0.00 36.38 2.78
3441 3554 1.223487 GGCCACCGCATCCTAGAAA 59.777 57.895 0.00 0.00 36.38 2.52
3442 3555 2.908015 GGCCACCGCATCCTAGAA 59.092 61.111 0.00 0.00 36.38 2.10
3443 3556 3.536917 CGGCCACCGCATCCTAGA 61.537 66.667 2.24 0.00 41.17 2.43
3453 3566 3.771160 ATCAGACGGACGGCCACC 61.771 66.667 8.76 4.48 0.00 4.61
3454 3567 2.509336 CATCAGACGGACGGCCAC 60.509 66.667 8.76 0.00 0.00 5.01
3455 3568 4.451150 GCATCAGACGGACGGCCA 62.451 66.667 8.76 0.00 0.00 5.36
3490 3603 0.810031 AATGTACGCGGACAGGATGC 60.810 55.000 30.25 0.46 42.53 3.91
3491 3604 1.651987 AAATGTACGCGGACAGGATG 58.348 50.000 30.25 0.00 46.00 3.51
3492 3605 2.396590 AAAATGTACGCGGACAGGAT 57.603 45.000 30.25 15.55 31.51 3.24
3493 3606 2.070783 GAAAAATGTACGCGGACAGGA 58.929 47.619 30.25 6.34 31.51 3.86
3494 3607 2.073816 AGAAAAATGTACGCGGACAGG 58.926 47.619 30.25 0.00 31.51 4.00
3495 3608 3.806316 AAGAAAAATGTACGCGGACAG 57.194 42.857 30.25 0.00 31.51 3.51
3496 3609 3.850374 GCAAAGAAAAATGTACGCGGACA 60.850 43.478 29.06 29.06 0.00 4.02
3497 3610 2.655001 GCAAAGAAAAATGTACGCGGAC 59.345 45.455 16.44 16.44 0.00 4.79
3498 3611 2.290916 TGCAAAGAAAAATGTACGCGGA 59.709 40.909 12.47 0.00 0.00 5.54
3499 3612 2.656085 TGCAAAGAAAAATGTACGCGG 58.344 42.857 12.47 0.00 0.00 6.46
3583 3696 9.990360 TTCTTGTTTTCTTTGGTCTTACTTTTT 57.010 25.926 0.00 0.00 0.00 1.94
3584 3697 9.419297 GTTCTTGTTTTCTTTGGTCTTACTTTT 57.581 29.630 0.00 0.00 0.00 2.27
3585 3698 8.033038 GGTTCTTGTTTTCTTTGGTCTTACTTT 58.967 33.333 0.00 0.00 0.00 2.66
3586 3699 7.177744 TGGTTCTTGTTTTCTTTGGTCTTACTT 59.822 33.333 0.00 0.00 0.00 2.24
3587 3700 6.661805 TGGTTCTTGTTTTCTTTGGTCTTACT 59.338 34.615 0.00 0.00 0.00 2.24
3588 3701 6.750501 GTGGTTCTTGTTTTCTTTGGTCTTAC 59.249 38.462 0.00 0.00 0.00 2.34
3589 3702 6.434652 TGTGGTTCTTGTTTTCTTTGGTCTTA 59.565 34.615 0.00 0.00 0.00 2.10
3590 3703 5.245075 TGTGGTTCTTGTTTTCTTTGGTCTT 59.755 36.000 0.00 0.00 0.00 3.01
3591 3704 4.770010 TGTGGTTCTTGTTTTCTTTGGTCT 59.230 37.500 0.00 0.00 0.00 3.85
3592 3705 5.066968 TGTGGTTCTTGTTTTCTTTGGTC 57.933 39.130 0.00 0.00 0.00 4.02
3593 3706 5.245075 TCTTGTGGTTCTTGTTTTCTTTGGT 59.755 36.000 0.00 0.00 0.00 3.67
3594 3707 5.719173 TCTTGTGGTTCTTGTTTTCTTTGG 58.281 37.500 0.00 0.00 0.00 3.28
3595 3708 7.832503 ATTCTTGTGGTTCTTGTTTTCTTTG 57.167 32.000 0.00 0.00 0.00 2.77
3596 3709 8.527810 TGTATTCTTGTGGTTCTTGTTTTCTTT 58.472 29.630 0.00 0.00 0.00 2.52
3597 3710 8.062065 TGTATTCTTGTGGTTCTTGTTTTCTT 57.938 30.769 0.00 0.00 0.00 2.52
3598 3711 7.639113 TGTATTCTTGTGGTTCTTGTTTTCT 57.361 32.000 0.00 0.00 0.00 2.52
3599 3712 8.871686 AATGTATTCTTGTGGTTCTTGTTTTC 57.128 30.769 0.00 0.00 0.00 2.29
3600 3713 9.665719 AAAATGTATTCTTGTGGTTCTTGTTTT 57.334 25.926 0.00 0.00 0.00 2.43
3602 3715 9.965824 CTAAAATGTATTCTTGTGGTTCTTGTT 57.034 29.630 0.00 0.00 0.00 2.83
3603 3716 9.349713 TCTAAAATGTATTCTTGTGGTTCTTGT 57.650 29.630 0.00 0.00 0.00 3.16
3606 3719 9.793259 TCTTCTAAAATGTATTCTTGTGGTTCT 57.207 29.630 0.00 0.00 0.00 3.01
3620 3733 9.927081 ATGGAAGTTGGATATCTTCTAAAATGT 57.073 29.630 2.05 0.00 39.67 2.71
3627 3740 9.440761 AGTAGTTATGGAAGTTGGATATCTTCT 57.559 33.333 2.05 0.00 39.67 2.85
3628 3741 9.699703 GAGTAGTTATGGAAGTTGGATATCTTC 57.300 37.037 2.05 0.00 39.21 2.87
3629 3742 8.652290 GGAGTAGTTATGGAAGTTGGATATCTT 58.348 37.037 2.05 0.00 0.00 2.40
3630 3743 8.013667 AGGAGTAGTTATGGAAGTTGGATATCT 58.986 37.037 2.05 0.00 0.00 1.98
3631 3744 8.091449 CAGGAGTAGTTATGGAAGTTGGATATC 58.909 40.741 0.00 0.00 0.00 1.63
3632 3745 7.569111 ACAGGAGTAGTTATGGAAGTTGGATAT 59.431 37.037 0.00 0.00 0.00 1.63
3633 3746 6.901300 ACAGGAGTAGTTATGGAAGTTGGATA 59.099 38.462 0.00 0.00 0.00 2.59
3634 3747 5.726793 ACAGGAGTAGTTATGGAAGTTGGAT 59.273 40.000 0.00 0.00 0.00 3.41
3635 3748 5.091552 ACAGGAGTAGTTATGGAAGTTGGA 58.908 41.667 0.00 0.00 0.00 3.53
3636 3749 5.422214 ACAGGAGTAGTTATGGAAGTTGG 57.578 43.478 0.00 0.00 0.00 3.77
3637 3750 7.612677 ACTTACAGGAGTAGTTATGGAAGTTG 58.387 38.462 7.44 0.00 42.78 3.16
3638 3751 7.793948 ACTTACAGGAGTAGTTATGGAAGTT 57.206 36.000 7.44 0.00 42.78 2.66
3639 3752 7.310485 CCAACTTACAGGAGTAGTTATGGAAGT 60.310 40.741 7.44 7.44 46.35 3.01
3640 3753 7.042335 CCAACTTACAGGAGTAGTTATGGAAG 58.958 42.308 6.44 6.44 39.14 3.46
3641 3754 6.727231 TCCAACTTACAGGAGTAGTTATGGAA 59.273 38.462 0.00 0.00 0.00 3.53
3642 3755 6.258354 TCCAACTTACAGGAGTAGTTATGGA 58.742 40.000 0.00 0.00 0.00 3.41
3643 3756 6.540438 TCCAACTTACAGGAGTAGTTATGG 57.460 41.667 0.00 0.00 0.00 2.74
3644 3757 9.751542 CTAATCCAACTTACAGGAGTAGTTATG 57.248 37.037 7.55 0.00 43.80 1.90
3650 3763 5.105064 GGCACTAATCCAACTTACAGGAGTA 60.105 44.000 0.00 0.00 37.34 2.59
3651 3764 4.323562 GGCACTAATCCAACTTACAGGAGT 60.324 45.833 0.00 0.00 37.34 3.85
3652 3765 4.080863 AGGCACTAATCCAACTTACAGGAG 60.081 45.833 0.00 0.00 36.02 3.69
3653 3766 3.844211 AGGCACTAATCCAACTTACAGGA 59.156 43.478 0.00 0.00 36.02 3.86
3654 3767 4.222124 AGGCACTAATCCAACTTACAGG 57.778 45.455 0.00 0.00 36.02 4.00
3655 3768 5.491982 AGAAGGCACTAATCCAACTTACAG 58.508 41.667 0.00 0.00 38.49 2.74
3656 3769 5.488341 GAGAAGGCACTAATCCAACTTACA 58.512 41.667 0.00 0.00 38.49 2.41
3657 3770 4.567159 CGAGAAGGCACTAATCCAACTTAC 59.433 45.833 0.00 0.00 38.49 2.34
3658 3771 4.464951 TCGAGAAGGCACTAATCCAACTTA 59.535 41.667 0.00 0.00 38.49 2.24
3659 3772 3.260884 TCGAGAAGGCACTAATCCAACTT 59.739 43.478 0.00 0.00 38.49 2.66
3660 3773 2.832129 TCGAGAAGGCACTAATCCAACT 59.168 45.455 0.00 0.00 38.49 3.16
3661 3774 3.247006 TCGAGAAGGCACTAATCCAAC 57.753 47.619 0.00 0.00 38.49 3.77
3662 3775 3.797039 CATCGAGAAGGCACTAATCCAA 58.203 45.455 0.00 0.00 38.49 3.53
3663 3776 2.483714 GCATCGAGAAGGCACTAATCCA 60.484 50.000 0.00 0.00 38.49 3.41
3664 3777 2.139118 GCATCGAGAAGGCACTAATCC 58.861 52.381 0.00 0.00 38.49 3.01
3665 3778 2.826428 TGCATCGAGAAGGCACTAATC 58.174 47.619 0.00 0.00 38.49 1.75
3666 3779 2.988010 TGCATCGAGAAGGCACTAAT 57.012 45.000 0.00 0.00 38.49 1.73
3667 3780 2.988010 ATGCATCGAGAAGGCACTAA 57.012 45.000 0.00 0.00 38.49 2.24
3668 3781 2.168313 TGAATGCATCGAGAAGGCACTA 59.832 45.455 0.00 0.00 38.49 2.74
3669 3782 3.934331 AATGAATGCATCGAGAAGGCACT 60.934 43.478 0.00 0.00 40.83 4.40
3670 3783 1.372582 TGAATGCATCGAGAAGGCAC 58.627 50.000 0.00 0.00 40.83 5.01
3671 3784 2.336945 ATGAATGCATCGAGAAGGCA 57.663 45.000 0.00 6.35 42.43 4.75
3672 3785 2.357009 ACAATGAATGCATCGAGAAGGC 59.643 45.455 0.00 0.00 32.35 4.35
3673 3786 4.095334 TCAACAATGAATGCATCGAGAAGG 59.905 41.667 0.00 0.00 32.35 3.46
3674 3787 5.225899 TCAACAATGAATGCATCGAGAAG 57.774 39.130 0.00 0.00 32.35 2.85
3675 3788 5.587443 AGATCAACAATGAATGCATCGAGAA 59.413 36.000 0.00 0.00 39.49 2.87
3676 3789 5.007332 CAGATCAACAATGAATGCATCGAGA 59.993 40.000 0.00 0.00 39.49 4.04
3677 3790 5.205565 CAGATCAACAATGAATGCATCGAG 58.794 41.667 0.00 0.00 39.49 4.04
3678 3791 4.496840 GCAGATCAACAATGAATGCATCGA 60.497 41.667 0.00 0.00 45.03 3.59
3679 3792 3.729217 GCAGATCAACAATGAATGCATCG 59.271 43.478 0.00 0.00 45.03 3.84
3680 3793 3.729217 CGCAGATCAACAATGAATGCATC 59.271 43.478 0.00 0.00 45.53 3.91
3681 3794 3.490249 CCGCAGATCAACAATGAATGCAT 60.490 43.478 15.25 0.00 45.53 3.96
3682 3795 2.159352 CCGCAGATCAACAATGAATGCA 60.159 45.455 15.25 0.00 45.53 3.96
3683 3796 2.097954 TCCGCAGATCAACAATGAATGC 59.902 45.455 0.00 8.50 43.54 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.