>input_sequence_44991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATGTCTTGCTGCGGCAGCGCCGAGGAGG
ACACCTACGGCCCGCCGGCGAACCAAGCCGCTCCGCCGCCCAACGTCAACGCTCCCGGTATCCAC------TCATCGTCG
CCGCTCATTTCACTTTTCACGTCTCCCGTGTG------------------AGTTTTTTTATGAACGAAACGACTTTGGC-
---GCAGGCAACAGAGGCGGGCCGAGGGGGCCCGGCGCCACGAGGCCCGGAGGGCCGCCCAAGGTGGTCACCATCGACGT
GCCGGCGATCCCGCTAGACGAGCTCAACAAGATGACCAACAATTTCAACGACAAGGCCCTCATCGGCGAGGGCTCCTACG
GCCGCGTCTACAATGGTACCCTTAGCGATGGCCGCCCCGCCGTCATCAAGAAGCTCGATCCCAGCGCCTCAACGGAGTCG
GACTCAGAATTCTCTGCTCAGGTGCGTGCCAAT----CATCATCCTCTCATCTGAATA----TCCGATCGATGATGATGC
CACGTTGCCGCAGCAAGTTAATCTGGTCAAATATATTGGTTGATTTATTTCCTTTGGATTCTTCCTTC-------TCATG
ATTGATCGATCTCATTGCCATAGCTAGCAATGGTCTCCAAGCTTAAGAACGAGTACTTCGTGGAACTCCTGGGCTATTGC
ATGGAGGATGGGAACCGCATGCTGGCCTATCAATTTGCAACCATGGGCTCTTTGCATAATATCTTGCACGGTGCGTCTAC
TCTACCACAATTTTAATTTTGATCTACAGT-ATATGTCAAGGTGA--------CTGCTAAATTAACATACTGTAA----C
TGTAACTTACCGATCGATTCTTACCGGCCCATGCAGGCAAGAAAGGAGTGCAGGGCGCTGAACCCGGGCCGGTGCTCAAC
TGGGCTCAGCGCGTGAAGATAGCTTACGGAGCGGCAAGGGGGCTAGAGTACCTACATGAAAAAGTCCAACCATCGATTGT
TCATCGAGATATTCGGTCGAGTAACGTCCTAATATTCGACGAATTCAGCTCCAAGATTGCGGACTTCAACCTGACAAACC
AGGGCACGGACACCGCTGCCCGGTTACATTCCACTCGTGTGCTAGGAACATTTGGATACCACGCACCAGAGTAAGACCG-
---ACCCTATGAATTCTTCTTCTT--------AATTCATATATTCTCTCAGTTTTGCTACCTTGCTC--ACATTTTGCTG
TTTGGGATTTGGTAATATTCAGATATGCTATGACAGGGCAAATCAACCAAAAGAGTGACGTCTATAGCTTCGGCGTGATC
CTACTAGAACTACTGACGGGAAGAAAACCGGTCGATCACACCATGCCGAAAGGGCAGCAAAGTCTTGTTACTTGGGTATC
GTATTTAATAACCTTTGGATAAACTTATC---GGTGTATTGTCATGCATGGTCTTACATATATGTGTTTCTTGATCCTCT
GAGGCAGGCCGCTCCAAGGTTGAGCGAAGATAAAGTAAAGCAATGCGTTGATCCAAAGCTCAACAGTGACTACCCTCCAA
AAGCCGTCGCCAAGGTATGACACTGTAGTAAATCCGGCAAACTGTAAAATTTAACAGTACGTGTCTGTACCGAGG--TTG
TGTTTTCATGTGTTCAGCTAGCAGCAGTGGCAGCGCTGTGCGTGCAGTACGAATCCGACTTCAGACCGAACATGACGATC
GTTGTGAAGGCGATTCAGCCCCTTCTCAACCAAAAACCGGCTGGACCAGCCGCCGAAGCACCGAGACCCTGA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr1D_1_TraesCS1D01G444300
TTCTCGTAGCGCACACCCCGTGTAAACGTACGTGTGGTCAACAGGCCGGCCCATGTATGAGCTCCTAGTTCCAGTTTTTT
-GAAACTTCTAGAATCTTCCAACTAGTTTTTGTTTGTTTTTCTCTTTTTCTTTTTTTAGTTTGTCTTTTAGTTCATATTA
AATTTCATAATTTTTTT--TTAAAGTTCACGATTTTTTTAATACGATTTTTTTCAAAGGCTTAAATTTGTTTCAAATATG
TTAACTTT-AAAAAAATGCTTGATTTCTTTTCCAAATTCACGAACTATTTCTAAAATGCATGAACTTTTTGAAAGTTCGC
GAACATTTCTCATCCCCAACTTTTTAAAAATTTCATGAACTTTCTCCAAACACATGAGCTCTATTCAAATGCTCGAACTT
ATGTCGACAAATAATGACA--ATATAAAATCCTCA-AGGAGGAAGACGACCATTTTGCATGGAACGGCGCTCTCAGTCTC
ATGATGTAACATCTCGCATGCCAATAATAGGATACGGCAGGAGCACAAAGTAAAGGAGCCAGTTAAAGCGGAAGAGGAGC
CTCCTTTGGCGCGAAAAAAGGAGCCCCCACCCTTGGCCACCACTAATCTCTTACCCGGAAACAAAACACCGCCGCTGTTC
TTGATCCACCGACGACCATTCTCCGGTGGGAATTTTTCGGGGAGGTAATGCTCAT--ATACTAGATTGAAAATCGCCTGG
TTGTTATTCTTCCATTGTGTCGTTGATCCAATTTACTAGTTTCTTTCGGGATTGGAGAATCTAGCAAGATCCACATTGGC
ACATTGCAAGATTTTCCAAATCTTGATTGAGTTAGTTCTGGATCAGATCGTCTGTTCCAC---ATTGTACTCGTTGATCC
AATTTATTTTCTTTCTGGATTGGAGGATGTGTTGATCGATCCTATTCTGTTGCTGGGAATGCGTACGTCCATCCAGGTCA
TGATCTTCTGACCGCCCCCAAATCAACCCATCGTGTCCGGCCGGCGAGAACAATGTCTTGCTGCGGCAGCGCCGAGGAGG
ACACCTACGGCCCGCCGGCGAACCAAGCCGCTCCGCCGCCCAACGTCAACGCTCCCGGTATCCAC------TCATCGTCG
CCGCTCATTTCACTTTTCACGTCTCCCGTGTG------------------AGTTTTTTTATGAACGAAACGACTTTGGC-
---GCAGGCAACAGAGGCGGGCCGAGGGGGCCCGGCGCCACGAGGCCCGGAGGGCCGCCCAAGGTGGTCACCATCGACGT
GCCGGCGATCCCGCTAGACGAGCTCAACAAGATGACCAACAATTTCAACGACAAGGCCCTCATCGGCGAGGGCTCCTACG
GCCGCGTCTACAATGGTACCCTTAGCGATGGCCGCCCCGCCGTCATCAAGAAGCTCGATCCCAGCGCCTCAACGGAGTCG
GACTCAGAATTCTCTGCTCAGGTGCGTGCCAAT----CATCATCCTCTCATCTGAATA----TCCGATCGATGATGATGC
CACGTTGCCGCAGCAAGTTAATCTGGTCAAATATATTGGTTGATTTATTTCCTTTGGATTCTTCCTTC-------TCATG
ATTGATCGATCTCATTGCCATAGCTAGCAATGGTCTCCAAGCTTAAGAACGAGTACTTCGTGGAACTCCTGGGCTATTGC
ATGGAGGATGGGAACCGCATGCTGGCCTATCAATTTGCAACCATGGGCTCTTTGCATAATATCTTGCACGGTGCGTCTAC
TCTACCACAATTTTAATTTTGATCTACAGT-ATATGTCAAGGTGA--------CTGCTAAATTAACATACTGTAA----C
TGTAACTTACCGATCGATTCTTACCGGCCCATGCAGGCAAGAAAGGAGTGCAGGGCGCTGAACCCGGGCCGGTGCTCAAC
TGGGCTCAGCGCGTGAAGATAGCTTACGGAGCGGCAAGGGGGCTAGAGTACCTACATGAAAAAGTCCAACCATCGATTGT
TCATCGAGATATTCGGTCGAGTAACGTCCTAATATTCGACGAATTCAGCTCCAAGATTGCGGACTTCAACCTGACAAACC
AGGGCACGGACACCGCTGCCCGGTTACATTCCACTCGTGTGCTAGGAACATTTGGATACCACGCACCAGAGTAAGACCG-
---ACCCTATGAATTCTTCTTCTT--------AATTCATATATTCTCTCAGTTTTGCTACCTTGCTC--ACATTTTGCTG
TTTGGGATTTGGTAATATTCAGATATGCTATGACAGGGCAAATCAACCAAAAGAGTGACGTCTATAGCTTCGGCGTGATC
CTACTAGAACTACTGACGGGAAGAAAACCGGTCGATCACACCATGCCGAAAGGGCAGCAAAGTCTTGTTACTTGGGTATC
GTATTTAATAACCTTTGGATAAACTTATC---GGTGTATTGTCATGCATGGTCTTACATATATGTGTTTCTTGATCCTCT
GAGGCAGGCCGCTCCAAGGTTGAGCGAAGATAAAGTAAAGCAATGCGTTGATCCAAAGCTCAACAGTGACTACCCTCCAA
AAGCCGTCGCCAAGGTATGACACTGTAGTAAATCCGGCAAACTGTAAAATTTAACAGTACGTGTCTGTACCGAGG--TTG
TGTTTTCATGTGTTCAGCTAGCAGCAGTGGCAGCGCTGTGCGTGCAGTACGAATCCGACTTCAGACCGAACATGACGATC
GTTGTGAAGGCGATTCAGCCCCTTCTCAACCAAAAACCGGCTGGACCAGCCGCCGAAGCACCGAGACCCTGATCGATCAG
CGCTAGGCGGCACAAAGAAGCTTGAACGAACTCT----TGCATGGTTCCATGTGTTATATCTATAGATCATCTACTTGAT
TTGTTTAGGTCATGGGCTGACCACCTGTGGCGGTGCTAGGTTCAAAACCTTGTGATGTCAAAATTTTCTGACCGAAAACC
GTGTAGACAAATTAAACAGGAGGA---ACAGAAAAGAATGTACTTTGTTATGGTAGCAGTCCTTTATATGGTTATGCAAA
TATTTGA------TATGAATGCAAT-----------CTACATAGGTTCCAACATAAGTAATGAGTAACGAGACGAAGATA
CATGAGATCATTGCCTATTCTATTGCGCAAATCAGACTTGATATATTCCATTGTGCAAAATACTGTCACAATTGTTGTCG
TAGTGTCCTGCAAAAT-CAACGCAAACTTCACCAAAAAATCACACACTAGAGTATACCTTTGTCTTAACTAGTTTTCTGC
AAAGATCACAAACCCCTTTAGTGGCGGAGACAGGCCCCAAGCAGCGTGGGCTGCTGCCTGGGGCTTGAGGGCACTTTCCT
TTGTTCATACTTCATAGTAGTAAAATACTGTAGCTACAATGCTACAGTGACCAAAGGCTGCCTAGGACGGCCGGGGGCTT
TGCAAAATTCTAGCGCCACTTTTAGGCCAACTCCAGCGCACGATCCCAAACGGACGTCCGTTTAGCCCGGATTCTGTCTG
TTTGGGTAGGGAAATGGGGTCGTGTCCGGTCAGTTTCTAGGATGCGGTGGCCGTCCGTCTGATGCGCCGGCGCATCCCGG
CCGCATCCTGTCCGCGTACATTTTTCTTTGCAAGTCCATAATTTTTTTCATCATTGATTTTTGATACATGAGAATACATC
ATCAAATTTTGACTAAAAAAGTAAGACCAAAGAAAACAAGAACCACAAGAATACATTTTAGAAGATATCCAACTTCCATA
ACTACTCCTGTAAGTTGGATTAGTGCCTTCTCGATGCATTCATTGTTGATCTGCGGA
>chr1B_1
TTCTCGTAGCGCACACCCCATGTAAACGTACGTGTGGTCAGCAGGCCGGCCCATGTATGAGCTCATAGTTCCAGTTTTTT
TGAAATTTCTAGAATCTTCCAACAAGTTTTTGTTTTGCTTTTTTT--------------------TTTTAGTTCATATTA
AATTTCATAATTTTTTTGTTTAAAGTTTACGATTTTCTTTAAAACGATTTTTTCAAAGTCTTAAATTTGTTTCAGATATG
TCAACTTAAAAAAAAATGATTGATTTGTTTTCCAAATTCACGAACTATTT-TAAAATGCATGAACTTTTTGAAAGTTCA-
GAACATTTTGCATTCCCAACTTCTTAAAAATTTCATGAACCTTCTCCAAACCCATGAGCTCTATTCAAATGCTTGAACTT
ATGTCGACAAATAATGACA--ATACAAAATCCCTGTAGGAGGAAGACGTCCATTTTGCATGGAACGGCGCTCTCACTCTC
ATGATGTAACATCTCGCATGCTAATAATAGGACACGGCAGGAGCACAAAGTAA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr1A_394
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CTT
ATGTGGACAAATAA---CAATATATAAAATCCTCA-AGGAGGAAGACGACCATTTTGCATGGAACGGCGCTCTCACTCTC
ATGATGTAACATCTCGCATGCCAATAATAGGATACGGCAGGAGCACAAAGTAAAGGAGCCAGTTAAAGCGGAACAGGAGC
CTCCTTTGGCGCGAAAAAAGGAGCCCCCACCCTTGGCCACCACTAATCTCTTACCCGGAAACAAAACACCGCCGCTGTTC
TTGATCCACCGACGACCATTCTCCGGTGGGAATTTTTCGGGGAGGTAATGCTCAT--A--CTAGATTGAAAATAGCCGGG
TTGTTTTTCTTTCATTGTGTCGTTGATCCAATTTAT---TTTCTTTGGGGATTGGAGGATCTAGCAAGATCCTCATTGGC
TCATCGCAAGATTTTCGAAATCTTGATTGAATTAGTTCTGGATCAGATCATCTATTCCAC---ATTGTACTCGTTGATCC
AATTTATTTTCTTTGGAGATTGGAGGATGTGTTGATCGATCCTATTCTGTTGTTGGGAATGCGTACGTCCATCCAGGTCA
TGATCTTCTGACCGCCCCCAAACCAACCCATCGCGTCCGGCCGGCGAGAACAATGTCTTGCTGCGGCAGCGCCGAGGAGG
ACACCTACGGCCCGCCGGCGAACCAAGCCGCTCCGCCGCCCAACGTCAACGCTCCCGGTATCCACTCATAATCATCGTCG
CCGCTCATAGCTCATATCAATCGGCCAGGGCGCTGGATCTGATCACAGC---TTTTTTTATGAACGAAACGACTTTGGC-
---GCAGGCAACAGAGGCGGGCCGAGGGGGCCCGGCGCCACGAGGCCCGGAGGGCCGCCCAAGGTGCTCACCATCGACGT
GCCGGCGATACCGCTAGACGAGCTCAACAAGATGACCAACAATTTCAGCGACAAGGCCCTCATCGGCGAGGGTTCCATCG
GCCGCGTCTACAGTTGTACCCTTAGCGATGGCCGCCCCGCCGTGATCAAGAAGCTCGACCCCAGCGCCTCGCAGGAGTCC
GACTCAGAATTCTCTGCTCAGGTGCGTGCCAAGCATGCATCATCCTCTCAGATG---A----TCTGATCCATGATGATCC
CATACTGCCGCACCAAATTAATCTGGTCAAATATATTGGTTGATTCATTTCCTTTGGATTTGGATTCTTCTCA-------
--TGATCGATCTCATTGCCATAGCTAGCAATGGTCTCCAAGCTTAAGAACGAGTACTTCGTGGAACTCCTGGGCTATTGC
TTGGAGGATGGCAACCGCATGCTGGCCTATCAGTTTGCGACCATGGGTTCTTTGCATAATATCTTGCACGGTGCGTCTAC
TCTACCACAATGTTAATTTGCATCTATC----TATGTCAAGGTGACCGCCTGCCTGCTAAATTAACATTCTTAC------
-------------------CTTACCGGCCCGTGCAGGCAAGAAAGGAGTGCAGGGCGCTGAACCCGGGCCGGTGCTCAAC
TGGGCTCAGCGCGTCAAGATAGCTTACGGAGCCGCGAGGGGAATAGAGTACCTACATGAGAAAGTCCAACCATCGATTGT
TCATCGAGATATTCGGTCGAGTAACATCCTAATATTTGACGAATTCAGCTCCAAGATTGCCGACTTCAACCTGACAAACC
AGGGTACGGAATCCGCTGCCCGGTTACACTCGACTCGTGTGCTAGGAACATTTGGATACCACGCACCAGAGTAAGACCGG
CCGGATGATATTGTGTTTTCTTTGACATATCAAATTTATATATGCTCTCGGTTTTGCTACCTTGCTCACA--TTTTGCTG
TTTGGGATTTGGTAATATTCAGATATGCTATGACAGGGCAAATCAACCAAAAGAGTGACGTCTACAGCTTCGGTGTGATC
CTACTAGAACTACTGACAGGAAGAAAACCGGTCGATCACACCATGCCCAAAGGGCAGCAAAGTCTTGTTACTTGGGTATT
GTATTTAATACCCTTCGAATAAACTTGTCATTGGTGTATCGTCATTCATGGTCTTACATATATATGTTTCTTAATCCTCT
GAGGCAGGCTACTCCAAGGTTGAGCGAAGATAAAGTAAAGCAATGTGTTGATCCAAAGCTCAACAGTGAGTACCCACCAA
AAGCCGTCGCCAAGGTACGATATTGTAGCAAATCGTGCAAACTACAAAATTTAACAGTACGTGTCCTTGCTGAAGTTGCT
TCTCTTCATGTTTTCAGCTAGCAGCAGTGGCAGCGCTGTGCCTTCAGTACGAATCCGACTTCAGACCGAACATGACAATC
GTCGTGAAGGCAATACAACCCCTTCTCAACCAAAAACCGGCTGGACCCACCACCGAGGCACCGAGACCCTGATCAATCAG
TTCTAGGTGGCACAAAGAATCCTGAATTAACTCT----TGCATGGTTCCATGTGTTTTATAAATAGATCATCTACTTGAT
TTGTCTAGGCCACAGGCTGACCACCTGTGGC-GTGCCAGGATCAAAACCTTGTCATGTCAAAATTTTCTAACAGAAAATT
GTGTAGACAAATTAAGCA---GGA---ACAGAAAAGAATGCACTTTGTTATGGTAGCAGTCCTTTAT--GGTTATGCTTA
TAATTGA------TATGTATGCAATACACTA---TAATACATAGGTTTCAACATAA-------GTAATGAGATAAAGATA
CAAGAAATCATTGCCTATTGTATTACACAAACCGGACTTGATATATTTCGTGGAGAAGAATACTCTCATAGTTGTTGCCG
TTGTGTCCTGCAAAAACCAACACTAGCTTCACCCAGAAAAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr1B_394
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CTT
ATGTCGATAAATAA---CA--ATACAAAATCCTCA-AGGAGGAAGACGACCATTTTGCATGGAACGGCGCTCTCACTCTC
TTGATGTAACATCTCGCATGCTAATAATAGGACACGGCAGGAGCACAAAGTAAAGGAACCAGTTAAAACGGAACAGGAGC
CTCCTTTGGCGCGAAAAAAGGAGCCCCCACCCTTGGCCACCACTAATCTCTTACCCGGGAACAAAACACCGCCGCTGTTC
TTGATCCACCGACGACCATTCTCCGGTGGGAAATTTTCGGGGAGGTAATTAATGCTCATACTAGATTGGGAATCACCGGG
TTATGATTCTTCCATTGCATCGTTGATCCAATTTAT---TTTCTTCGTGGATTGGAGGATCTAGCAAGATCCACACTGGC
ACATTGCCAGATTTTCCAAATCTTGATTGAATTAGTTCTTGATCGGATCAGCGATTCCGCATTATTTTAGTCCTTGATCG
AATTCATTTTGTTTGGGGATTGGAGGATGTGTTGATCGATCCTATTCTGTTGTTGGGAATCC--ACGTCCATCCAGGTCA
TGATCTGCTGACCGCCCCCAAACCAACCCATCGTGTCCGGCCGGCGAGAACAATGTCTTGCTGCGGCAGCGCCGAGGAGG
ACACGTACGGCCCGCCGGCGAACCAAGCCGCTCCGCCGCCCAACGTCAACGCTCCCGGTATCAAC------TCATCGTCT
CTTTT--------------------CACGGATCTTGGTGTGATCACAGACAGTTTTTTGATGAACGAAACGACTTTGGCG
CATGCAGGCAACAGAGGCGGGCCGAGGGGGCCCGGCGCCGCGAGGCCCGGAGGGCCGCCCAAGGTGGTCACCATCGACGT
GCCGGCGATCCCGCTAGACGAGCTCAACAAGATGACCAACAATTTCAGCGACAAGGCCCTCATCGGCGAGGGCTCCTACG
GCCGCGTCTACAATGGTACCCTTAGCGACGGCCGCCCCGCCGTCATCAAGAAGCTCGATCCCAGCGCCTCAACGGAGTCC
GACTCCGAATTCTCTGCTCAGGTGCGTGCCAACCATCCATCATCCTCTCATCTGAATATATATCCGATCGATGATGA---
----------------------------------------------ATTGCCTTTGGATTCTTCCTTCTCATGAGTCATG
ATTGATCGATCTCATTGCCATAGCTAGCAATGGTCTCCAAGCTTAAGAACGAGTACTTCGTGGAACTCCTGGGCTATTGC
ATGGAGGATGGGAACCGCATGCTGGCCTATCAATTTGCAACCATGGGTTCTTTGCATAATATCTTGCACGGTGCGTCTAC
TCTACCACAATTCTAATTTTGATCTATATGCATATGTCAAGGTGA--------CTGCTAAATTAACATACTGTAATTAAC
TGTAACTTACCGATCGATTCTTACCGGCCCGTGCAGGCAAGAAAGGAGTGCAGGGCGCTGAACCCGGGCCGGTGCTCAAC
TGGGCTCAGCGCGTCAAGATAGCTTACGGAGCGGCAAGGGGGCTAGAGTACCTACATGAAAAAGTCCAACCATCGATTGT
TCATCGAGATATTCGGTCGAGTAACGTCCTAATATTCGACGAATTCAGCTCCAAGATTGCCGACTTCAACCTGACAAACC
AGGGCACAGACACCGCTGCCCGGTTACATTCGACTCGTGTGCTAGGAACATTTGGATACCACGCACCAGAGTAAGACCGA
TCGACCCTATGAATTCTTTTTCTT--------AATTCATATATTCTCTCAGTTTTGCTACCTTGCTCACACATTTTGCTG
TTTGGGATTTGGTAATATTCAGATATGCTATGACAGGGCAAATCAACCAAAAGAGTGACGTCTATAGCTTCGGCGTGATC
CTACTAGAACTACTGACGGGAAGAAAACCGGTCGATCACACCATGCCGAAAGGGCAGCAAAGTCTTGTTACTTGGGTATC
GTGTTCAATAACCTTTGGATAAACTTATC---GGTGTATTGTCATGCATGGTCTTACATATATGTGTTTCTTGATCCTCT
GAGGCAGGCCACTCCAAGGTTGAGCGAAGATAAAGTAAAGCAATGTGTTGATCCAAAGCTCAACAGTGACTACCCTCCAA
AAGCCGTCGCCAAGGTATGCCACTGTAGTAAATCCGGCAAACTGTAAAATTTAACAGTACGTGTCTGTACCGAGG--TTG
TGTTTTCATGTCTTCAGCTAGCAGCAGTGGCAGCGCTGTGCGTGCAGTACGAATCCGACTTCAGACCGAACATGACGATC
GTCGTGAAGGCGATTCAGCCCCTTCTCAACCAAAAACCGGCTGGACCAGCCGCCGAAGCACCGAGACCCTGATCGATCAG
CGCTAGGCGGCACAAAGAAGCTTGAACGAACTCTTGCATGCATGGTTCCATGTGTTATATCTATAGATCATCTACTTGAT
TTGTTTAGGTCATAGGCTGACCACCTGTGGCGGTGCTAGGTTCAAAACCTTGTCATGTCAAAATTTTCTGACCGAAAATC
GTGTAGACAAATTAAACA---GGAGGAACAGAAAAGAATGTACTTTGTTATGGTAGCAGTCCTTTATATGGTTATGCAAA
TATTTGA------TATGAATGCAAT-----------ATACATAGGTTTCAACATAA-------GTAACGAGACGAAGATA
CATGAGATCATTGCCTATTCTATTGCGCAAATCAGACTTGATATATTCCATTGTGCAAAATACCCTCGCAATTGTTGTCG
TAGTGTCCTGCAAAAT-CAACGCAAACTTCACCAAAAAATCACACACTAGAGTATACCTTTGTCTTAACTAGTTTTCTGC
AAAGATCACTAACCCCTTTAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr1A_2134
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTGCTACCTTGCTC--ATATTTTGTTG
TTTGGGATTTGGTAATATTCAGATATGCTATGACACGGCAAGTCAACCAAAAGAGTGACGTCGACAGCTTTGGCGTGATC
CTATTAGAACTAGTCATCGGAAGAAAACCAGTTGGTCACACCATGCCGAAAGGCCAGCAAAGTCTTTTTACATAGGTATC
ATACTTAATAACCTTCGGATAAACTTTTC---GAGGTATTGTCATGCATGGCCTTACATAGATGTGTTTCTTAATCATGT
GAGGCAGGCCACCCCAAGGTTAAGCGAAGCTAAAGTAAAGCAATATGTTGATCCAAAGCTCAACAGTGACTAACCTCCAA
AAGCCGTCGCTAAGGAATGACACTGTGGTAAGTCCGGCAAATTGTAAAATTTAACAGTACGTTTCTGTACTAAAGTTTTG
TTTCTTCATGTTTTCAGCTAGTAGCAATGGCAGCGTTGTTCATTTTGTACAAATCCGATTTCAGGCCAAACATGACAATT
GTCGTGAAGGCGATTCAGCCCCTTCTCAACCAAAA-CCGGCTGGACCCGCCACCGAG---CCAAGACCTTGATCAATCAG
CGCTAGGCGGCACAAAGAAGCCTGAACGAACTCTTT----CATGGTTCCATGTGTTATATCTATATAACATCTACTTGAT
TTG--TAGATCACAGGCTGACAACCTGTGGCGGTTCCAGGATAAAAATCTTGTCATGTCAAAATTTTGTGACGGAAAATT
GTGTAGACAAATTAAACA---AGA---ATAGAAACGAATATACTTTGTTATGGTAGCGGTCGTTTATA--GTTATGCATA
TACTCTGTATTTGTTTGTATGCAATATACTACTATAATACATAGGTTTCAACATAA-------ATAACGAGATGAAGATA
CATTAAATCATTGCCTATTCTATTGTGCAACTCAGACTTGATATATTACATTGTGCAAAATACTCTCAAAATTGTTGACG
TTGTGTCCTATAAAAT-CAACGCTAGCTTCACAAAAAAA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>SNPs
-------------------S--------------------S-----------------------S---------------
-----S-----------------S-----------SSS---S-S-SSSSSSSSSSSSSSSSSSSS---------------
---------------------------S--------S--S-S-SSSS-----------S---------------S-----
-S-----S----------S-------S-----------------------S---------------------------SS
--------SS---S--------S-----------------S----------S---------------------S------
---------------------------------------------------------------------------S----
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------------------------SSSS-------S----------S----------------------
------------------------------S------------------S---S--------------------------
--------------SS------------------------------------S---------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------SS-S-S-S---SSSSS--S-S-S-------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------------------------------------------------S
--------------------------------S---------------------------------------------S-
--SSS-------S---S----------------------------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------S-SS--------------------------------------------------
------------------------------S-------------------------------------------------
--------------S-----------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------S------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S----------------------------------S----------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S---------------------------------------S------------------------S-
------------------SSS-----------------------------------------------------------
------------------------------------S----------S--------SSSSSSS-----------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_983
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CTTCTGACCGCCCCCAAAT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_1871
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGCAGGCAAGAAAGGAGTG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_1136
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GTCG
CCGCTCATTTCACTTT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_2652
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GTTCAGCTAGCAGCAGTGGC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_1871
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GATCGATTCTTACCGGCCCA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_3539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTCGTGTCCGGTCAGTTTCT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
