Multiple sequence alignment - TraesCS1D01G440400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G440400 chr1D 100.000 2331 0 0 1 2331 486008423 486006093 0.000000e+00 4305
1 TraesCS1D01G440400 chr1D 87.685 203 19 5 1598 1796 486065998 486065798 5.010000e-57 231
2 TraesCS1D01G440400 chr1D 89.320 103 5 6 1659 1755 486063126 486063024 8.750000e-25 124
3 TraesCS1D01G440400 chr1A 84.395 1115 79 35 724 1772 583587947 583586862 0.000000e+00 1007
4 TraesCS1D01G440400 chr1A 92.842 475 14 7 1873 2331 583586818 583586348 0.000000e+00 671
5 TraesCS1D01G440400 chr1A 82.673 202 31 2 1599 1796 583659541 583659340 2.380000e-40 176
6 TraesCS1D01G440400 chr1A 82.456 171 24 6 1588 1755 583611010 583610843 6.710000e-31 145
7 TraesCS1D01G440400 chr3D 95.270 444 14 6 1 438 581974081 581973639 0.000000e+00 697
8 TraesCS1D01G440400 chr3D 90.171 234 23 0 1132 1365 157216597 157216830 2.910000e-79 305
9 TraesCS1D01G440400 chr3D 90.816 98 6 2 1654 1749 395077814 395077718 6.760000e-26 128
10 TraesCS1D01G440400 chr7D 95.183 436 19 2 1 435 73127087 73126653 0.000000e+00 688
11 TraesCS1D01G440400 chr7D 94.570 442 17 5 1 438 489451951 489451513 0.000000e+00 676
12 TraesCS1D01G440400 chr7D 94.118 442 21 4 1 438 75958250 75958690 0.000000e+00 667
13 TraesCS1D01G440400 chr2D 94.104 441 16 7 1 437 539571561 539571127 0.000000e+00 662
14 TraesCS1D01G440400 chr5D 93.878 441 22 4 1 438 382341529 382341091 0.000000e+00 660
15 TraesCS1D01G440400 chr5D 93.665 442 23 4 1 438 168013812 168014252 0.000000e+00 656
16 TraesCS1D01G440400 chr6D 93.651 441 25 2 1 438 17972720 17972280 0.000000e+00 656
17 TraesCS1D01G440400 chr4D 93.665 442 22 5 1 438 468586181 468586620 0.000000e+00 656
18 TraesCS1D01G440400 chr1B 86.042 523 43 15 956 1457 676739580 676739067 3.410000e-148 534
19 TraesCS1D01G440400 chr1B 85.533 394 33 10 1952 2331 676738649 676738266 7.810000e-105 390
20 TraesCS1D01G440400 chr1B 87.843 255 30 1 458 711 676740477 676740223 4.870000e-77 298
21 TraesCS1D01G440400 chr1B 83.439 314 32 14 1623 1924 676738951 676738646 8.210000e-70 274
22 TraesCS1D01G440400 chr1B 90.148 203 11 4 724 921 676739783 676739585 2.970000e-64 255
23 TraesCS1D01G440400 chr1B 86.139 202 24 4 1599 1796 676775021 676774820 5.040000e-52 215
24 TraesCS1D01G440400 chr3B 93.976 83 4 1 1659 1740 519858191 519858109 8.750000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G440400 chr1D 486006093 486008423 2330 True 4305.0 4305 100.0000 1 2331 1 chr1D.!!$R1 2330
1 TraesCS1D01G440400 chr1A 583586348 583587947 1599 True 839.0 1007 88.6185 724 2331 2 chr1A.!!$R3 1607
2 TraesCS1D01G440400 chr1B 676738266 676740477 2211 True 350.2 534 86.6010 458 2331 5 chr1B.!!$R2 1873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.0297 GCGTGTGGGCGTTAGTTTTT 59.97 50.0 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1998 0.107017 TAGGGCTCATTGAAGCTGCC 60.107 55.0 6.18 6.18 42.13 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.541133 ACAGAGAATTAAGAAACTAGACTTGC 57.459 34.615 0.00 0.00 0.00 4.01
28 29 7.604545 ACAGAGAATTAAGAAACTAGACTTGCC 59.395 37.037 0.00 0.00 0.00 4.52
29 30 7.604164 CAGAGAATTAAGAAACTAGACTTGCCA 59.396 37.037 0.00 0.00 0.00 4.92
30 31 8.325046 AGAGAATTAAGAAACTAGACTTGCCAT 58.675 33.333 0.00 0.00 0.00 4.40
31 32 8.273780 AGAATTAAGAAACTAGACTTGCCATG 57.726 34.615 0.00 0.00 0.00 3.66
32 33 5.880054 TTAAGAAACTAGACTTGCCATGC 57.120 39.130 0.00 0.00 0.00 4.06
33 34 3.423539 AGAAACTAGACTTGCCATGCA 57.576 42.857 0.00 0.00 36.47 3.96
34 35 3.077359 AGAAACTAGACTTGCCATGCAC 58.923 45.455 0.00 0.00 38.71 4.57
35 36 1.826385 AACTAGACTTGCCATGCACC 58.174 50.000 0.00 0.00 38.71 5.01
36 37 0.692476 ACTAGACTTGCCATGCACCA 59.308 50.000 0.00 0.00 38.71 4.17
37 38 1.283029 ACTAGACTTGCCATGCACCAT 59.717 47.619 0.00 0.00 38.71 3.55
38 39 2.291153 ACTAGACTTGCCATGCACCATT 60.291 45.455 0.00 0.00 38.71 3.16
39 40 2.512692 AGACTTGCCATGCACCATTA 57.487 45.000 0.00 0.00 38.71 1.90
40 41 2.806434 AGACTTGCCATGCACCATTAA 58.194 42.857 0.00 0.00 38.71 1.40
41 42 3.164268 AGACTTGCCATGCACCATTAAA 58.836 40.909 0.00 0.00 38.71 1.52
42 43 3.056607 AGACTTGCCATGCACCATTAAAC 60.057 43.478 0.00 0.00 38.71 2.01
43 44 2.632028 ACTTGCCATGCACCATTAAACA 59.368 40.909 0.00 0.00 38.71 2.83
44 45 3.070734 ACTTGCCATGCACCATTAAACAA 59.929 39.130 0.00 0.00 38.71 2.83
45 46 3.758755 TGCCATGCACCATTAAACAAA 57.241 38.095 0.00 0.00 31.71 2.83
46 47 4.077300 TGCCATGCACCATTAAACAAAA 57.923 36.364 0.00 0.00 31.71 2.44
47 48 4.649692 TGCCATGCACCATTAAACAAAAT 58.350 34.783 0.00 0.00 31.71 1.82
48 49 5.068636 TGCCATGCACCATTAAACAAAATT 58.931 33.333 0.00 0.00 31.71 1.82
49 50 5.048921 TGCCATGCACCATTAAACAAAATTG 60.049 36.000 0.00 0.00 31.71 2.32
50 51 5.392286 CCATGCACCATTAAACAAAATTGC 58.608 37.500 0.00 0.00 0.00 3.56
51 52 5.392286 CATGCACCATTAAACAAAATTGCC 58.608 37.500 0.00 0.00 0.00 4.52
52 53 4.454678 TGCACCATTAAACAAAATTGCCA 58.545 34.783 0.00 0.00 0.00 4.92
53 54 5.068636 TGCACCATTAAACAAAATTGCCAT 58.931 33.333 0.00 0.00 0.00 4.40
54 55 5.048921 TGCACCATTAAACAAAATTGCCATG 60.049 36.000 0.00 0.00 0.00 3.66
55 56 5.180868 GCACCATTAAACAAAATTGCCATGA 59.819 36.000 0.00 0.00 0.00 3.07
56 57 6.127952 GCACCATTAAACAAAATTGCCATGAT 60.128 34.615 0.00 0.00 0.00 2.45
57 58 7.065563 GCACCATTAAACAAAATTGCCATGATA 59.934 33.333 0.00 0.00 0.00 2.15
58 59 8.389603 CACCATTAAACAAAATTGCCATGATAC 58.610 33.333 0.00 0.00 0.00 2.24
59 60 8.099537 ACCATTAAACAAAATTGCCATGATACA 58.900 29.630 0.00 0.00 0.00 2.29
60 61 9.111613 CCATTAAACAAAATTGCCATGATACAT 57.888 29.630 0.00 0.00 0.00 2.29
61 62 9.923786 CATTAAACAAAATTGCCATGATACATG 57.076 29.630 0.00 4.94 0.00 3.21
62 63 6.425577 AAACAAAATTGCCATGATACATGC 57.574 33.333 0.00 3.56 0.00 4.06
63 64 5.087391 ACAAAATTGCCATGATACATGCA 57.913 34.783 0.00 0.00 0.00 3.96
64 65 4.871557 ACAAAATTGCCATGATACATGCAC 59.128 37.500 0.00 2.20 32.63 4.57
65 66 5.113383 CAAAATTGCCATGATACATGCACT 58.887 37.500 0.00 1.37 32.63 4.40
66 67 5.347620 AAATTGCCATGATACATGCACTT 57.652 34.783 0.00 6.23 32.63 3.16
67 68 6.468333 AAATTGCCATGATACATGCACTTA 57.532 33.333 0.00 0.00 32.63 2.24
68 69 6.468333 AATTGCCATGATACATGCACTTAA 57.532 33.333 0.00 0.00 32.63 1.85
69 70 5.911378 TTGCCATGATACATGCACTTAAA 57.089 34.783 0.00 0.00 32.63 1.52
70 71 5.911378 TGCCATGATACATGCACTTAAAA 57.089 34.783 0.00 0.00 0.00 1.52
71 72 6.468333 TGCCATGATACATGCACTTAAAAT 57.532 33.333 0.00 0.00 0.00 1.82
72 73 6.876155 TGCCATGATACATGCACTTAAAATT 58.124 32.000 0.00 0.00 0.00 1.82
73 74 6.757478 TGCCATGATACATGCACTTAAAATTG 59.243 34.615 0.00 0.00 0.00 2.32
74 75 6.292488 GCCATGATACATGCACTTAAAATTGC 60.292 38.462 0.00 0.00 39.33 3.56
75 76 6.201425 CCATGATACATGCACTTAAAATTGCC 59.799 38.462 0.00 0.00 38.00 4.52
76 77 6.278172 TGATACATGCACTTAAAATTGCCA 57.722 33.333 0.00 0.00 38.00 4.92
77 78 6.876155 TGATACATGCACTTAAAATTGCCAT 58.124 32.000 0.00 0.00 38.00 4.40
78 79 6.757478 TGATACATGCACTTAAAATTGCCATG 59.243 34.615 0.00 8.43 38.00 3.66
79 80 4.255301 ACATGCACTTAAAATTGCCATGG 58.745 39.130 7.63 7.63 38.00 3.66
80 81 4.255301 CATGCACTTAAAATTGCCATGGT 58.745 39.130 14.67 0.00 38.00 3.55
81 82 4.348863 TGCACTTAAAATTGCCATGGTT 57.651 36.364 14.67 1.29 38.00 3.67
82 83 4.314121 TGCACTTAAAATTGCCATGGTTC 58.686 39.130 14.67 0.00 38.00 3.62
83 84 4.202295 TGCACTTAAAATTGCCATGGTTCA 60.202 37.500 14.67 0.00 38.00 3.18
84 85 4.152223 GCACTTAAAATTGCCATGGTTCAC 59.848 41.667 14.67 0.00 32.21 3.18
85 86 5.295950 CACTTAAAATTGCCATGGTTCACA 58.704 37.500 14.67 0.00 0.00 3.58
86 87 5.757320 CACTTAAAATTGCCATGGTTCACAA 59.243 36.000 14.67 9.30 0.00 3.33
87 88 6.259608 CACTTAAAATTGCCATGGTTCACAAA 59.740 34.615 14.67 0.00 0.00 2.83
88 89 6.825721 ACTTAAAATTGCCATGGTTCACAAAA 59.174 30.769 14.67 0.57 0.00 2.44
89 90 7.337942 ACTTAAAATTGCCATGGTTCACAAAAA 59.662 29.630 14.67 0.00 0.00 1.94
120 121 8.770438 TTTTATGGTCAAAGTATTGGAATTGC 57.230 30.769 0.00 0.00 37.15 3.56
121 122 4.799564 TGGTCAAAGTATTGGAATTGCC 57.200 40.909 0.00 0.00 37.15 4.52
157 158 9.463443 AAACTAAAATTGTCATGCTCTACAAAC 57.537 29.630 2.23 0.00 38.95 2.93
158 159 8.396272 ACTAAAATTGTCATGCTCTACAAACT 57.604 30.769 2.23 0.00 38.95 2.66
159 160 9.502091 ACTAAAATTGTCATGCTCTACAAACTA 57.498 29.630 2.23 0.00 38.95 2.24
165 166 9.630098 ATTGTCATGCTCTACAAACTAAAATTG 57.370 29.630 2.23 0.00 38.95 2.32
166 167 7.083858 TGTCATGCTCTACAAACTAAAATTGC 58.916 34.615 0.00 0.00 0.00 3.56
167 168 6.528072 GTCATGCTCTACAAACTAAAATTGCC 59.472 38.462 0.00 0.00 0.00 4.52
168 169 6.208402 TCATGCTCTACAAACTAAAATTGCCA 59.792 34.615 0.00 0.00 0.00 4.92
169 170 5.768317 TGCTCTACAAACTAAAATTGCCAC 58.232 37.500 0.00 0.00 0.00 5.01
170 171 5.300539 TGCTCTACAAACTAAAATTGCCACA 59.699 36.000 0.00 0.00 0.00 4.17
171 172 6.015519 TGCTCTACAAACTAAAATTGCCACAT 60.016 34.615 0.00 0.00 0.00 3.21
172 173 6.308766 GCTCTACAAACTAAAATTGCCACATG 59.691 38.462 0.00 0.00 0.00 3.21
173 174 7.517614 TCTACAAACTAAAATTGCCACATGA 57.482 32.000 0.00 0.00 0.00 3.07
174 175 7.367285 TCTACAAACTAAAATTGCCACATGAC 58.633 34.615 0.00 0.00 0.00 3.06
175 176 5.911752 ACAAACTAAAATTGCCACATGACA 58.088 33.333 0.00 0.00 0.00 3.58
176 177 6.344500 ACAAACTAAAATTGCCACATGACAA 58.656 32.000 0.00 1.03 0.00 3.18
177 178 6.257630 ACAAACTAAAATTGCCACATGACAAC 59.742 34.615 0.00 0.00 0.00 3.32
178 179 5.789643 ACTAAAATTGCCACATGACAACT 57.210 34.783 0.00 0.00 0.00 3.16
179 180 6.160576 ACTAAAATTGCCACATGACAACTT 57.839 33.333 0.00 0.00 0.00 2.66
180 181 6.581712 ACTAAAATTGCCACATGACAACTTT 58.418 32.000 0.00 6.17 31.09 2.66
181 182 7.721402 ACTAAAATTGCCACATGACAACTTTA 58.279 30.769 0.00 6.97 29.21 1.85
182 183 7.867403 ACTAAAATTGCCACATGACAACTTTAG 59.133 33.333 23.68 23.68 44.74 1.85
183 184 5.789643 AATTGCCACATGACAACTTTAGT 57.210 34.783 0.00 0.00 0.00 2.24
184 185 5.789643 ATTGCCACATGACAACTTTAGTT 57.210 34.783 0.00 0.00 39.12 2.24
185 186 5.590530 TTGCCACATGACAACTTTAGTTT 57.409 34.783 0.00 0.00 35.83 2.66
186 187 6.701145 TTGCCACATGACAACTTTAGTTTA 57.299 33.333 0.00 0.00 35.83 2.01
187 188 6.701145 TGCCACATGACAACTTTAGTTTAA 57.299 33.333 0.00 0.00 35.83 1.52
188 189 6.734137 TGCCACATGACAACTTTAGTTTAAG 58.266 36.000 0.00 0.00 35.83 1.85
189 190 5.629435 GCCACATGACAACTTTAGTTTAAGC 59.371 40.000 0.00 0.00 35.83 3.09
190 191 6.734137 CCACATGACAACTTTAGTTTAAGCA 58.266 36.000 0.00 0.00 35.83 3.91
191 192 6.636850 CCACATGACAACTTTAGTTTAAGCAC 59.363 38.462 0.00 0.00 35.83 4.40
192 193 7.417612 CACATGACAACTTTAGTTTAAGCACT 58.582 34.615 0.00 0.00 35.83 4.40
193 194 8.556194 CACATGACAACTTTAGTTTAAGCACTA 58.444 33.333 0.00 0.00 35.83 2.74
194 195 9.284968 ACATGACAACTTTAGTTTAAGCACTAT 57.715 29.630 0.00 0.00 35.83 2.12
195 196 9.546909 CATGACAACTTTAGTTTAAGCACTATG 57.453 33.333 0.00 0.00 35.83 2.23
196 197 8.094798 TGACAACTTTAGTTTAAGCACTATGG 57.905 34.615 0.00 0.00 35.83 2.74
197 198 6.909909 ACAACTTTAGTTTAAGCACTATGGC 58.090 36.000 0.00 0.00 35.83 4.40
198 199 6.488683 ACAACTTTAGTTTAAGCACTATGGCA 59.511 34.615 0.00 0.00 35.83 4.92
199 200 7.013846 ACAACTTTAGTTTAAGCACTATGGCAA 59.986 33.333 0.00 0.00 35.83 4.52
200 201 6.909909 ACTTTAGTTTAAGCACTATGGCAAC 58.090 36.000 0.00 0.00 35.83 4.17
201 202 6.715264 ACTTTAGTTTAAGCACTATGGCAACT 59.285 34.615 0.00 0.00 33.68 3.16
202 203 7.881232 ACTTTAGTTTAAGCACTATGGCAACTA 59.119 33.333 0.00 0.00 32.13 2.24
203 204 7.605410 TTAGTTTAAGCACTATGGCAACTAC 57.395 36.000 0.00 0.00 32.73 2.73
204 205 5.556915 AGTTTAAGCACTATGGCAACTACA 58.443 37.500 0.00 0.00 35.83 2.74
205 206 5.643777 AGTTTAAGCACTATGGCAACTACAG 59.356 40.000 0.00 0.00 35.83 2.74
206 207 3.703001 AAGCACTATGGCAACTACAGT 57.297 42.857 0.00 0.00 35.83 3.55
207 208 2.977914 AGCACTATGGCAACTACAGTG 58.022 47.619 0.00 1.76 40.78 3.66
208 209 2.303022 AGCACTATGGCAACTACAGTGT 59.697 45.455 0.00 0.00 40.30 3.55
209 210 3.513912 AGCACTATGGCAACTACAGTGTA 59.486 43.478 2.36 2.36 40.30 2.90
210 211 4.020573 AGCACTATGGCAACTACAGTGTAA 60.021 41.667 4.21 0.00 40.30 2.41
211 212 4.693566 GCACTATGGCAACTACAGTGTAAA 59.306 41.667 4.21 0.00 40.30 2.01
212 213 5.390567 GCACTATGGCAACTACAGTGTAAAC 60.391 44.000 4.21 0.00 40.30 2.01
213 214 5.699001 CACTATGGCAACTACAGTGTAAACA 59.301 40.000 4.21 0.21 36.34 2.83
214 215 6.371548 CACTATGGCAACTACAGTGTAAACAT 59.628 38.462 4.21 7.13 36.34 2.71
215 216 5.880054 ATGGCAACTACAGTGTAAACATC 57.120 39.130 4.21 0.00 37.61 3.06
216 217 4.709250 TGGCAACTACAGTGTAAACATCA 58.291 39.130 4.21 0.00 37.61 3.07
217 218 5.312895 TGGCAACTACAGTGTAAACATCAT 58.687 37.500 4.21 0.00 37.61 2.45
218 219 5.181056 TGGCAACTACAGTGTAAACATCATG 59.819 40.000 4.21 0.00 37.61 3.07
219 220 5.391950 GGCAACTACAGTGTAAACATCATGG 60.392 44.000 4.21 0.00 0.00 3.66
220 221 5.631026 CAACTACAGTGTAAACATCATGGC 58.369 41.667 4.21 0.00 0.00 4.40
221 222 4.905429 ACTACAGTGTAAACATCATGGCA 58.095 39.130 4.21 0.00 0.00 4.92
222 223 5.312895 ACTACAGTGTAAACATCATGGCAA 58.687 37.500 4.21 0.00 0.00 4.52
223 224 4.503741 ACAGTGTAAACATCATGGCAAC 57.496 40.909 0.00 0.00 0.00 4.17
224 225 4.144297 ACAGTGTAAACATCATGGCAACT 58.856 39.130 0.00 0.00 37.61 3.16
225 226 4.584325 ACAGTGTAAACATCATGGCAACTT 59.416 37.500 0.00 0.00 37.61 2.66
226 227 5.068987 ACAGTGTAAACATCATGGCAACTTT 59.931 36.000 0.00 0.00 37.61 2.66
227 228 5.984926 CAGTGTAAACATCATGGCAACTTTT 59.015 36.000 0.00 0.00 37.61 2.27
228 229 5.984926 AGTGTAAACATCATGGCAACTTTTG 59.015 36.000 0.00 0.00 37.61 2.44
229 230 5.177327 GTGTAAACATCATGGCAACTTTTGG 59.823 40.000 0.00 0.00 37.61 3.28
230 231 3.405823 AACATCATGGCAACTTTTGGG 57.594 42.857 0.00 0.00 37.61 4.12
231 232 2.607499 ACATCATGGCAACTTTTGGGA 58.393 42.857 0.00 0.00 37.61 4.37
232 233 2.971330 ACATCATGGCAACTTTTGGGAA 59.029 40.909 0.00 0.00 37.61 3.97
233 234 3.390639 ACATCATGGCAACTTTTGGGAAA 59.609 39.130 0.00 0.00 37.61 3.13
234 235 4.141528 ACATCATGGCAACTTTTGGGAAAA 60.142 37.500 0.00 0.00 37.61 2.29
235 236 4.494091 TCATGGCAACTTTTGGGAAAAA 57.506 36.364 0.00 0.00 37.61 1.94
261 262 8.789881 AAAAATTTCGTCGAAACATATCAACA 57.210 26.923 21.91 0.00 34.23 3.33
262 263 8.964420 AAAATTTCGTCGAAACATATCAACAT 57.036 26.923 21.91 0.12 34.23 2.71
263 264 7.953305 AATTTCGTCGAAACATATCAACATG 57.047 32.000 21.91 0.00 34.23 3.21
264 265 5.463499 TTCGTCGAAACATATCAACATGG 57.537 39.130 4.91 0.00 0.00 3.66
265 266 3.868661 TCGTCGAAACATATCAACATGGG 59.131 43.478 0.00 0.00 0.00 4.00
266 267 3.002246 CGTCGAAACATATCAACATGGGG 59.998 47.826 0.00 0.00 0.00 4.96
267 268 3.945285 GTCGAAACATATCAACATGGGGT 59.055 43.478 0.00 0.00 0.00 4.95
268 269 4.035208 GTCGAAACATATCAACATGGGGTC 59.965 45.833 0.00 0.00 0.00 4.46
269 270 4.080582 TCGAAACATATCAACATGGGGTCT 60.081 41.667 0.00 0.00 0.00 3.85
270 271 5.129650 TCGAAACATATCAACATGGGGTCTA 59.870 40.000 0.00 0.00 0.00 2.59
271 272 5.466728 CGAAACATATCAACATGGGGTCTAG 59.533 44.000 0.00 0.00 0.00 2.43
272 273 5.975988 AACATATCAACATGGGGTCTAGT 57.024 39.130 0.00 0.00 0.00 2.57
273 274 5.975988 ACATATCAACATGGGGTCTAGTT 57.024 39.130 0.00 0.00 0.00 2.24
274 275 6.327386 ACATATCAACATGGGGTCTAGTTT 57.673 37.500 0.00 0.00 0.00 2.66
275 276 6.731467 ACATATCAACATGGGGTCTAGTTTT 58.269 36.000 0.00 0.00 0.00 2.43
276 277 6.603201 ACATATCAACATGGGGTCTAGTTTTG 59.397 38.462 0.00 0.00 0.00 2.44
277 278 4.715534 TCAACATGGGGTCTAGTTTTGA 57.284 40.909 0.00 0.00 0.00 2.69
278 279 5.055265 TCAACATGGGGTCTAGTTTTGAA 57.945 39.130 0.00 0.00 0.00 2.69
279 280 5.070001 TCAACATGGGGTCTAGTTTTGAAG 58.930 41.667 0.00 0.00 0.00 3.02
280 281 4.993705 ACATGGGGTCTAGTTTTGAAGA 57.006 40.909 0.00 0.00 0.00 2.87
281 282 5.520748 ACATGGGGTCTAGTTTTGAAGAT 57.479 39.130 0.00 0.00 0.00 2.40
282 283 5.501156 ACATGGGGTCTAGTTTTGAAGATC 58.499 41.667 0.00 0.00 0.00 2.75
283 284 5.251700 ACATGGGGTCTAGTTTTGAAGATCT 59.748 40.000 0.00 0.00 0.00 2.75
284 285 5.422214 TGGGGTCTAGTTTTGAAGATCTC 57.578 43.478 0.00 0.00 0.00 2.75
285 286 4.081642 TGGGGTCTAGTTTTGAAGATCTCG 60.082 45.833 0.00 0.00 0.00 4.04
286 287 4.081586 GGGGTCTAGTTTTGAAGATCTCGT 60.082 45.833 0.00 0.00 0.00 4.18
287 288 5.103687 GGGTCTAGTTTTGAAGATCTCGTC 58.896 45.833 0.00 0.00 0.00 4.20
288 289 4.794246 GGTCTAGTTTTGAAGATCTCGTCG 59.206 45.833 0.00 0.00 0.00 5.12
289 290 5.391736 GGTCTAGTTTTGAAGATCTCGTCGA 60.392 44.000 0.00 0.00 0.00 4.20
290 291 5.735427 GTCTAGTTTTGAAGATCTCGTCGAG 59.265 44.000 16.33 16.33 0.00 4.04
291 292 4.768130 AGTTTTGAAGATCTCGTCGAGA 57.232 40.909 26.15 26.15 43.20 4.04
292 293 4.477780 AGTTTTGAAGATCTCGTCGAGAC 58.522 43.478 26.46 18.95 41.76 3.36
306 307 3.777478 GTCGAGACGGATTTAATGGTGA 58.223 45.455 0.00 0.00 0.00 4.02
307 308 4.178540 GTCGAGACGGATTTAATGGTGAA 58.821 43.478 0.00 0.00 0.00 3.18
308 309 4.628333 GTCGAGACGGATTTAATGGTGAAA 59.372 41.667 0.00 0.00 0.00 2.69
309 310 5.121142 GTCGAGACGGATTTAATGGTGAAAA 59.879 40.000 0.00 0.00 0.00 2.29
310 311 5.121142 TCGAGACGGATTTAATGGTGAAAAC 59.879 40.000 0.00 0.00 0.00 2.43
311 312 5.291293 AGACGGATTTAATGGTGAAAACG 57.709 39.130 0.00 0.00 0.00 3.60
312 313 4.155280 AGACGGATTTAATGGTGAAAACGG 59.845 41.667 0.00 0.00 0.00 4.44
313 314 4.073549 ACGGATTTAATGGTGAAAACGGA 58.926 39.130 0.00 0.00 0.00 4.69
314 315 4.703093 ACGGATTTAATGGTGAAAACGGAT 59.297 37.500 0.00 0.00 0.00 4.18
315 316 5.184287 ACGGATTTAATGGTGAAAACGGATT 59.816 36.000 0.00 0.00 0.00 3.01
316 317 6.096695 CGGATTTAATGGTGAAAACGGATTT 58.903 36.000 0.00 0.00 0.00 2.17
317 318 6.588373 CGGATTTAATGGTGAAAACGGATTTT 59.412 34.615 0.00 0.00 40.83 1.82
318 319 7.117092 CGGATTTAATGGTGAAAACGGATTTTT 59.883 33.333 0.00 0.00 38.17 1.94
319 320 9.425577 GGATTTAATGGTGAAAACGGATTTTTA 57.574 29.630 0.00 0.00 38.17 1.52
325 326 8.894768 ATGGTGAAAACGGATTTTTAATTTGA 57.105 26.923 0.00 0.00 38.17 2.69
326 327 8.894768 TGGTGAAAACGGATTTTTAATTTGAT 57.105 26.923 0.00 0.00 38.17 2.57
327 328 9.331282 TGGTGAAAACGGATTTTTAATTTGATT 57.669 25.926 0.00 0.00 38.17 2.57
360 361 7.696992 AGGAGATAAAACATTTTTAAGCCGA 57.303 32.000 0.00 0.00 0.00 5.54
361 362 8.117813 AGGAGATAAAACATTTTTAAGCCGAA 57.882 30.769 0.00 0.00 0.00 4.30
362 363 8.581578 AGGAGATAAAACATTTTTAAGCCGAAA 58.418 29.630 0.00 0.00 0.00 3.46
363 364 9.198837 GGAGATAAAACATTTTTAAGCCGAAAA 57.801 29.630 0.00 0.00 0.00 2.29
365 366 8.708742 AGATAAAACATTTTTAAGCCGAAAAGC 58.291 29.630 0.00 0.00 30.30 3.51
366 367 6.670077 AAAACATTTTTAAGCCGAAAAGCA 57.330 29.167 0.00 0.00 34.23 3.91
367 368 6.670077 AAACATTTTTAAGCCGAAAAGCAA 57.330 29.167 0.00 0.00 34.23 3.91
368 369 6.670077 AACATTTTTAAGCCGAAAAGCAAA 57.330 29.167 0.00 0.00 34.23 3.68
369 370 6.670077 ACATTTTTAAGCCGAAAAGCAAAA 57.330 29.167 0.00 0.00 34.23 2.44
370 371 7.078011 ACATTTTTAAGCCGAAAAGCAAAAA 57.922 28.000 0.00 0.00 34.28 1.94
392 393 6.585695 AAAAATTCTGCTCATGTCATCTGT 57.414 33.333 0.00 0.00 0.00 3.41
393 394 6.585695 AAAATTCTGCTCATGTCATCTGTT 57.414 33.333 0.00 0.00 0.00 3.16
394 395 5.814764 AATTCTGCTCATGTCATCTGTTC 57.185 39.130 0.00 0.00 0.00 3.18
395 396 3.967332 TCTGCTCATGTCATCTGTTCA 57.033 42.857 0.00 0.00 0.00 3.18
396 397 4.482952 TCTGCTCATGTCATCTGTTCAT 57.517 40.909 0.00 0.00 0.00 2.57
397 398 5.603170 TCTGCTCATGTCATCTGTTCATA 57.397 39.130 0.00 0.00 0.00 2.15
398 399 5.354767 TCTGCTCATGTCATCTGTTCATAC 58.645 41.667 0.00 0.00 0.00 2.39
399 400 4.114794 TGCTCATGTCATCTGTTCATACG 58.885 43.478 0.00 0.00 0.00 3.06
400 401 4.115516 GCTCATGTCATCTGTTCATACGT 58.884 43.478 0.00 0.00 0.00 3.57
401 402 4.026228 GCTCATGTCATCTGTTCATACGTG 60.026 45.833 0.00 0.00 0.00 4.49
402 403 4.432712 TCATGTCATCTGTTCATACGTGG 58.567 43.478 0.00 0.00 0.00 4.94
403 404 2.616960 TGTCATCTGTTCATACGTGGC 58.383 47.619 0.00 0.00 0.00 5.01
404 405 2.028567 TGTCATCTGTTCATACGTGGCA 60.029 45.455 0.00 0.00 0.00 4.92
405 406 3.000041 GTCATCTGTTCATACGTGGCAA 59.000 45.455 0.00 0.00 0.00 4.52
406 407 3.435327 GTCATCTGTTCATACGTGGCAAA 59.565 43.478 0.00 0.00 0.00 3.68
407 408 4.068599 TCATCTGTTCATACGTGGCAAAA 58.931 39.130 0.00 0.00 0.00 2.44
408 409 4.699735 TCATCTGTTCATACGTGGCAAAAT 59.300 37.500 0.00 0.00 0.00 1.82
409 410 4.418013 TCTGTTCATACGTGGCAAAATG 57.582 40.909 0.00 0.00 0.00 2.32
410 411 4.068599 TCTGTTCATACGTGGCAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
411 412 4.154015 TCTGTTCATACGTGGCAAAATGAG 59.846 41.667 0.00 0.00 30.53 2.90
412 413 3.818210 TGTTCATACGTGGCAAAATGAGT 59.182 39.130 0.00 0.00 30.53 3.41
413 414 4.158384 GTTCATACGTGGCAAAATGAGTG 58.842 43.478 0.00 0.00 30.53 3.51
414 415 2.746904 TCATACGTGGCAAAATGAGTGG 59.253 45.455 0.00 0.00 0.00 4.00
415 416 2.264005 TACGTGGCAAAATGAGTGGT 57.736 45.000 0.00 0.00 0.00 4.16
416 417 0.667993 ACGTGGCAAAATGAGTGGTG 59.332 50.000 0.00 0.00 0.00 4.17
417 418 0.950836 CGTGGCAAAATGAGTGGTGA 59.049 50.000 0.00 0.00 0.00 4.02
418 419 1.541147 CGTGGCAAAATGAGTGGTGAT 59.459 47.619 0.00 0.00 0.00 3.06
419 420 2.669113 CGTGGCAAAATGAGTGGTGATG 60.669 50.000 0.00 0.00 0.00 3.07
420 421 1.894466 TGGCAAAATGAGTGGTGATGG 59.106 47.619 0.00 0.00 0.00 3.51
421 422 2.170166 GGCAAAATGAGTGGTGATGGA 58.830 47.619 0.00 0.00 0.00 3.41
422 423 2.165030 GGCAAAATGAGTGGTGATGGAG 59.835 50.000 0.00 0.00 0.00 3.86
423 424 2.165030 GCAAAATGAGTGGTGATGGAGG 59.835 50.000 0.00 0.00 0.00 4.30
424 425 2.134789 AAATGAGTGGTGATGGAGGC 57.865 50.000 0.00 0.00 0.00 4.70
425 426 0.107508 AATGAGTGGTGATGGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
426 427 1.267574 ATGAGTGGTGATGGAGGCGT 61.268 55.000 0.00 0.00 0.00 5.68
427 428 1.448540 GAGTGGTGATGGAGGCGTG 60.449 63.158 0.00 0.00 0.00 5.34
428 429 2.172483 GAGTGGTGATGGAGGCGTGT 62.172 60.000 0.00 0.00 0.00 4.49
429 430 2.034879 GTGGTGATGGAGGCGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
430 431 2.436646 GGTGATGGAGGCGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
431 432 2.436646 GTGATGGAGGCGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
432 433 4.408821 TGATGGAGGCGTGTGGGC 62.409 66.667 0.00 0.00 42.69 5.36
444 445 4.992511 GTGGGCGTGTGGGCGTTA 62.993 66.667 0.00 0.00 43.46 3.18
445 446 4.690719 TGGGCGTGTGGGCGTTAG 62.691 66.667 0.00 0.00 43.46 2.34
446 447 4.692475 GGGCGTGTGGGCGTTAGT 62.692 66.667 0.00 0.00 43.46 2.24
447 448 2.667199 GGCGTGTGGGCGTTAGTT 60.667 61.111 0.00 0.00 0.00 2.24
448 449 2.255881 GGCGTGTGGGCGTTAGTTT 61.256 57.895 0.00 0.00 0.00 2.66
449 450 1.650363 GCGTGTGGGCGTTAGTTTT 59.350 52.632 0.00 0.00 0.00 2.43
450 451 0.029700 GCGTGTGGGCGTTAGTTTTT 59.970 50.000 0.00 0.00 0.00 1.94
483 484 2.730382 TGTTACCCGATCTAGTGCTCA 58.270 47.619 0.00 0.00 0.00 4.26
486 487 0.757188 ACCCGATCTAGTGCTCAGGG 60.757 60.000 12.85 12.85 42.82 4.45
498 500 1.140052 TGCTCAGGGTTTTCGAGTTCA 59.860 47.619 0.00 0.00 0.00 3.18
499 501 2.218603 GCTCAGGGTTTTCGAGTTCAA 58.781 47.619 0.00 0.00 0.00 2.69
510 512 3.247006 TCGAGTTCAAGCTATGGGTTC 57.753 47.619 0.00 0.00 0.00 3.62
517 519 1.065418 CAAGCTATGGGTTCGGGTTCT 60.065 52.381 0.00 0.00 0.00 3.01
519 521 0.252197 GCTATGGGTTCGGGTTCTGT 59.748 55.000 0.00 0.00 0.00 3.41
543 545 2.137177 TTGGGTGCAGGCTTAGGGTC 62.137 60.000 0.00 0.00 0.00 4.46
553 555 1.271762 GGCTTAGGGTCTCGGGTTTTT 60.272 52.381 0.00 0.00 0.00 1.94
554 556 2.026915 GGCTTAGGGTCTCGGGTTTTTA 60.027 50.000 0.00 0.00 0.00 1.52
588 590 1.202722 AGGTATCCGGTTTTATGCCCG 60.203 52.381 0.00 0.00 43.82 6.13
590 592 2.291365 GTATCCGGTTTTATGCCCGTT 58.709 47.619 0.00 0.00 42.67 4.44
596 598 1.883926 GGTTTTATGCCCGTTGTGAGT 59.116 47.619 0.00 0.00 0.00 3.41
617 619 2.606519 AGCAGTACAAGGCCGGGA 60.607 61.111 2.18 0.00 0.00 5.14
618 620 1.972660 GAGCAGTACAAGGCCGGGAT 61.973 60.000 2.18 0.00 0.00 3.85
622 624 0.907704 AGTACAAGGCCGGGATGACA 60.908 55.000 2.18 0.00 0.00 3.58
625 627 0.469917 ACAAGGCCGGGATGACATAG 59.530 55.000 2.18 0.00 0.00 2.23
628 630 1.122019 AGGCCGGGATGACATAGGTC 61.122 60.000 2.18 0.00 44.57 3.85
647 649 2.227388 GTCATCAACCTTTGCTCCAGTG 59.773 50.000 0.00 0.00 0.00 3.66
657 659 1.214062 GCTCCAGTGACTCCGACAG 59.786 63.158 0.00 0.00 0.00 3.51
658 660 1.214062 CTCCAGTGACTCCGACAGC 59.786 63.158 0.00 0.00 0.00 4.40
665 667 3.978867 GACTCCGACAGCGACGACG 62.979 68.421 2.12 2.12 40.82 5.12
674 676 3.109547 GCGACGACGATGGCAACA 61.110 61.111 12.29 0.00 46.32 3.33
686 688 2.579201 GCAACAGAGCGGGCTAGA 59.421 61.111 0.00 0.00 0.00 2.43
689 691 1.984570 AACAGAGCGGGCTAGAGCA 60.985 57.895 3.54 0.00 44.36 4.26
695 697 4.880537 CGGGCTAGAGCAGTGCCG 62.881 72.222 12.58 2.01 46.97 5.69
699 701 3.826754 CTAGAGCAGTGCCGGCGA 61.827 66.667 23.90 8.37 36.08 5.54
716 718 2.123597 ACGAGGGCCATAGCGGTA 60.124 61.111 6.18 0.00 41.24 4.02
718 720 1.901948 CGAGGGCCATAGCGGTAGA 60.902 63.158 6.18 0.00 41.24 2.59
719 721 1.666580 GAGGGCCATAGCGGTAGAC 59.333 63.158 6.18 0.00 41.24 2.59
739 1168 3.488489 ACGCGTTGAGAATTAAATGCAC 58.512 40.909 5.58 0.00 38.03 4.57
851 1291 3.751518 ACTCCAAGCTACGAAAAATGGT 58.248 40.909 0.00 0.00 0.00 3.55
854 1295 2.556622 CCAAGCTACGAAAAATGGTGGT 59.443 45.455 0.00 0.00 0.00 4.16
910 1351 5.009210 CAGTACTCTTCAGGACATAGGCTAC 59.991 48.000 0.00 0.00 35.60 3.58
935 1376 2.957402 AGGATGTCAGTGGAAGCAAA 57.043 45.000 0.00 0.00 0.00 3.68
938 1379 2.030805 GGATGTCAGTGGAAGCAAACAC 60.031 50.000 0.00 0.00 37.86 3.32
946 1395 1.215673 TGGAAGCAAACACCTTACCCA 59.784 47.619 0.00 0.00 0.00 4.51
950 1399 1.170290 GCAAACACCTTACCCAGCGT 61.170 55.000 0.00 0.00 0.00 5.07
952 1401 1.679153 CAAACACCTTACCCAGCGTTT 59.321 47.619 0.00 0.00 30.49 3.60
954 1403 0.470766 ACACCTTACCCAGCGTTTCA 59.529 50.000 0.00 0.00 0.00 2.69
962 1411 1.066573 ACCCAGCGTTTCAGATCAGAG 60.067 52.381 0.00 0.00 0.00 3.35
978 1427 3.038280 TCAGAGTTCAGAACCACCTCAA 58.962 45.455 9.85 0.00 0.00 3.02
982 1431 2.147150 GTTCAGAACCACCTCAAGAGC 58.853 52.381 1.29 0.00 0.00 4.09
1026 1475 1.326213 CCTCCAGACTCCACATCGCT 61.326 60.000 0.00 0.00 0.00 4.93
1055 1504 0.460987 CTCCTCGCTGGTAGGCAAAG 60.461 60.000 0.00 0.00 37.07 2.77
1058 1513 1.364626 CTCGCTGGTAGGCAAAGCAG 61.365 60.000 12.94 12.94 45.62 4.24
1303 1782 0.459934 GCTGCACGCTTCATCTCTCT 60.460 55.000 0.00 0.00 35.14 3.10
1331 1810 5.185828 GGGATCAACCAAACTTGCTCTTAAT 59.814 40.000 0.00 0.00 41.20 1.40
1347 1833 5.788450 CTCTTAATCCAGTTCAGACAGTGT 58.212 41.667 0.00 0.00 0.00 3.55
1378 1864 5.027293 CATGTCTTCATGTATGGTCTGGA 57.973 43.478 0.00 0.00 44.37 3.86
1393 1879 3.489398 GGTCTGGAGCTAGACAATGTACG 60.489 52.174 16.58 0.00 46.97 3.67
1395 1881 4.334759 GTCTGGAGCTAGACAATGTACGTA 59.665 45.833 11.10 0.00 45.03 3.57
1425 1914 6.658816 TCATGGCAGTAATAATGTGACAAAGT 59.341 34.615 0.00 0.00 31.49 2.66
1430 1919 8.458843 GGCAGTAATAATGTGACAAAGTTGTAT 58.541 33.333 0.00 0.00 42.43 2.29
1470 1959 9.895138 AGCATGTCATATACTATGATTTATGCA 57.105 29.630 25.26 12.08 40.70 3.96
1487 1976 0.695943 GCATTATCGACGAGTACGCG 59.304 55.000 17.76 17.76 43.96 6.01
1494 1983 1.136529 TCGACGAGTACGCGCATATAC 60.137 52.381 19.25 6.79 43.96 1.47
1495 1984 1.397567 CGACGAGTACGCGCATATACA 60.398 52.381 19.25 0.00 43.96 2.29
1496 1985 2.231693 GACGAGTACGCGCATATACAG 58.768 52.381 19.25 7.65 43.96 2.74
1497 1986 1.869132 ACGAGTACGCGCATATACAGA 59.131 47.619 19.25 0.00 43.96 3.41
1498 1987 2.483106 ACGAGTACGCGCATATACAGAT 59.517 45.455 19.25 0.00 43.96 2.90
1499 1988 3.681417 ACGAGTACGCGCATATACAGATA 59.319 43.478 19.25 0.00 43.96 1.98
1500 1989 4.331992 ACGAGTACGCGCATATACAGATAT 59.668 41.667 19.25 0.00 43.96 1.63
1501 1990 5.163784 ACGAGTACGCGCATATACAGATATT 60.164 40.000 19.25 0.00 43.96 1.28
1502 1991 5.392874 CGAGTACGCGCATATACAGATATTC 59.607 44.000 5.73 0.00 0.00 1.75
1503 1992 5.579718 AGTACGCGCATATACAGATATTCC 58.420 41.667 5.73 0.00 0.00 3.01
1504 1993 3.782046 ACGCGCATATACAGATATTCCC 58.218 45.455 5.73 0.00 0.00 3.97
1505 1994 3.447586 ACGCGCATATACAGATATTCCCT 59.552 43.478 5.73 0.00 0.00 4.20
1506 1995 4.045104 CGCGCATATACAGATATTCCCTC 58.955 47.826 8.75 0.00 0.00 4.30
1507 1996 4.372656 GCGCATATACAGATATTCCCTCC 58.627 47.826 0.30 0.00 0.00 4.30
1508 1997 4.740934 GCGCATATACAGATATTCCCTCCC 60.741 50.000 0.30 0.00 0.00 4.30
1509 1998 4.499865 CGCATATACAGATATTCCCTCCCG 60.500 50.000 0.00 0.00 0.00 5.14
1520 2009 2.273449 CCTCCCGGCAGCTTCAAT 59.727 61.111 0.00 0.00 0.00 2.57
1551 2040 7.449086 CCTAAAAGTTGTTTTGGTACCTATGGA 59.551 37.037 14.36 0.00 36.51 3.41
1552 2041 6.894339 AAAGTTGTTTTGGTACCTATGGAG 57.106 37.500 14.36 0.00 0.00 3.86
1553 2042 4.332828 AGTTGTTTTGGTACCTATGGAGC 58.667 43.478 14.36 0.00 0.00 4.70
1554 2043 4.076394 GTTGTTTTGGTACCTATGGAGCA 58.924 43.478 14.36 0.00 0.00 4.26
1555 2044 3.950397 TGTTTTGGTACCTATGGAGCAG 58.050 45.455 14.36 0.00 0.00 4.24
1556 2045 3.585289 TGTTTTGGTACCTATGGAGCAGA 59.415 43.478 14.36 0.00 0.00 4.26
1557 2046 4.192317 GTTTTGGTACCTATGGAGCAGAG 58.808 47.826 14.36 0.00 0.00 3.35
1560 2049 2.243810 GGTACCTATGGAGCAGAGGAG 58.756 57.143 4.06 0.00 44.76 3.69
1562 2051 0.105246 ACCTATGGAGCAGAGGAGGG 60.105 60.000 0.00 0.00 44.76 4.30
1563 2052 0.105246 CCTATGGAGCAGAGGAGGGT 60.105 60.000 0.00 0.00 44.76 4.34
1565 2054 2.426414 CCTATGGAGCAGAGGAGGGTAA 60.426 54.545 0.00 0.00 44.76 2.85
1566 2055 2.503869 ATGGAGCAGAGGAGGGTAAT 57.496 50.000 0.00 0.00 0.00 1.89
1568 2057 3.414759 TGGAGCAGAGGAGGGTAATAA 57.585 47.619 0.00 0.00 0.00 1.40
1569 2058 3.941629 TGGAGCAGAGGAGGGTAATAAT 58.058 45.455 0.00 0.00 0.00 1.28
1572 2061 5.307196 TGGAGCAGAGGAGGGTAATAATAAC 59.693 44.000 0.00 0.00 0.00 1.89
1573 2062 5.470047 AGCAGAGGAGGGTAATAATAACG 57.530 43.478 0.00 0.00 0.00 3.18
1574 2063 4.900054 AGCAGAGGAGGGTAATAATAACGT 59.100 41.667 0.00 0.00 0.00 3.99
1593 2091 1.065851 GTACGGTAAGGAGCAGAGAGC 59.934 57.143 0.00 0.00 46.19 4.09
1607 2105 3.799420 GCAGAGAGCTTAGGAACGTAATG 59.201 47.826 0.00 0.00 41.15 1.90
1612 2110 8.085296 CAGAGAGCTTAGGAACGTAATGATAAT 58.915 37.037 0.00 0.00 0.00 1.28
1636 2134 4.821414 TTACCGTACAATTAAAGCGTCG 57.179 40.909 0.00 0.00 0.00 5.12
1648 2146 8.007716 ACAATTAAAGCGTCGATTATAAATCGG 58.992 33.333 18.76 7.74 41.45 4.18
1651 2149 2.729882 AGCGTCGATTATAAATCGGCAC 59.270 45.455 21.95 14.71 45.37 5.01
1665 2163 4.380628 GCACGACAGCTGCTGTGC 62.381 66.667 37.29 34.10 45.44 4.57
1737 2235 1.001181 TGGGCAGCAGCATTTTCTTTC 59.999 47.619 2.65 0.00 44.61 2.62
1738 2236 1.274447 GGGCAGCAGCATTTTCTTTCT 59.726 47.619 2.65 0.00 44.61 2.52
1739 2237 2.603953 GGCAGCAGCATTTTCTTTCTC 58.396 47.619 2.65 0.00 44.61 2.87
1740 2238 2.603953 GCAGCAGCATTTTCTTTCTCC 58.396 47.619 0.00 0.00 41.58 3.71
1742 2244 3.441572 GCAGCAGCATTTTCTTTCTCCTA 59.558 43.478 0.00 0.00 41.58 2.94
1773 2277 3.800531 CCCCAATCATCTGGCATTTTTC 58.199 45.455 0.00 0.00 34.88 2.29
1779 2283 4.380841 TCATCTGGCATTTTTCTGCATC 57.619 40.909 0.00 0.00 44.12 3.91
1796 2300 9.955102 TTTCTGCATCTCAATGATAATATAGCT 57.045 29.630 0.00 0.00 34.61 3.32
1797 2301 9.955102 TTCTGCATCTCAATGATAATATAGCTT 57.045 29.630 0.00 0.00 34.61 3.74
1800 2304 9.828039 TGCATCTCAATGATAATATAGCTTAGG 57.172 33.333 0.00 0.00 34.61 2.69
1835 2346 4.452825 TCTCTCCATCTACGACCTAACTG 58.547 47.826 0.00 0.00 0.00 3.16
1843 2354 6.485984 CCATCTACGACCTAACTGTACAGTAT 59.514 42.308 28.13 19.30 41.58 2.12
1885 2396 9.461312 TCATCTATTACAACCTACAGCAAAAAT 57.539 29.630 0.00 0.00 0.00 1.82
1931 2474 4.885270 CCCCACGGCAACACCACA 62.885 66.667 0.00 0.00 39.03 4.17
1932 2475 3.591835 CCCACGGCAACACCACAC 61.592 66.667 0.00 0.00 39.03 3.82
1933 2476 2.826287 CCACGGCAACACCACACA 60.826 61.111 0.00 0.00 39.03 3.72
1934 2477 2.715005 CACGGCAACACCACACAG 59.285 61.111 0.00 0.00 39.03 3.66
1935 2478 3.209097 ACGGCAACACCACACAGC 61.209 61.111 0.00 0.00 39.03 4.40
1936 2479 3.964875 CGGCAACACCACACAGCC 61.965 66.667 0.00 0.00 41.86 4.85
1937 2480 2.832661 GGCAACACCACACAGCCA 60.833 61.111 0.00 0.00 44.59 4.75
1938 2481 2.412937 GCAACACCACACAGCCAC 59.587 61.111 0.00 0.00 0.00 5.01
1939 2482 2.120909 GCAACACCACACAGCCACT 61.121 57.895 0.00 0.00 0.00 4.00
1940 2483 1.729276 CAACACCACACAGCCACTG 59.271 57.895 0.00 0.00 37.52 3.66
1941 2484 2.120909 AACACCACACAGCCACTGC 61.121 57.895 0.00 0.00 34.37 4.40
1953 2496 0.950116 GCCACTGCTATTCTCATGGC 59.050 55.000 0.00 0.00 45.26 4.40
1954 2497 2.336945 CCACTGCTATTCTCATGGCA 57.663 50.000 0.00 0.00 44.15 4.92
1955 2498 2.646930 CCACTGCTATTCTCATGGCAA 58.353 47.619 0.00 0.00 45.49 4.52
2017 2560 5.765182 ACAAAGATCCGAAGATGTGTTTTCT 59.235 36.000 0.00 0.00 30.90 2.52
2025 2568 7.581476 TCCGAAGATGTGTTTTCTCAAAATAC 58.419 34.615 2.60 2.60 41.23 1.89
2071 2628 1.478510 ACTAGCTTCAGTGTGATCCGG 59.521 52.381 0.00 0.00 0.00 5.14
2075 2632 0.898320 CTTCAGTGTGATCCGGTCCT 59.102 55.000 0.00 0.00 0.00 3.85
2076 2633 0.895530 TTCAGTGTGATCCGGTCCTC 59.104 55.000 0.00 0.00 0.00 3.71
2077 2634 0.039764 TCAGTGTGATCCGGTCCTCT 59.960 55.000 0.00 0.00 0.00 3.69
2078 2635 0.174389 CAGTGTGATCCGGTCCTCTG 59.826 60.000 0.00 5.94 0.00 3.35
2138 2695 3.541632 GCATTCTCCTTTCCGTCCATTA 58.458 45.455 0.00 0.00 0.00 1.90
2150 2707 1.134907 CGTCCATTACGCTGGTACCTT 60.135 52.381 14.36 0.00 46.10 3.50
2187 2744 0.991920 GTCTGGGGTTCAATCCTGGA 59.008 55.000 0.00 0.00 0.00 3.86
2201 2758 0.664761 CCTGGACGGCAGCATTATTG 59.335 55.000 0.00 0.00 0.00 1.90
2298 2856 4.515361 GAGGGGCAGATGATCAGATATTG 58.485 47.826 0.09 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.994170 GCAAGTCTAGTTTCTTAATTCTCTGTT 58.006 33.333 0.00 0.00 0.00 3.16
2 3 7.604545 GGCAAGTCTAGTTTCTTAATTCTCTGT 59.395 37.037 0.00 0.00 0.00 3.41
3 4 7.604164 TGGCAAGTCTAGTTTCTTAATTCTCTG 59.396 37.037 0.00 0.00 0.00 3.35
4 5 7.680730 TGGCAAGTCTAGTTTCTTAATTCTCT 58.319 34.615 0.00 0.00 0.00 3.10
5 6 7.907214 TGGCAAGTCTAGTTTCTTAATTCTC 57.093 36.000 0.00 0.00 0.00 2.87
6 7 7.148171 GCATGGCAAGTCTAGTTTCTTAATTCT 60.148 37.037 0.00 0.00 0.00 2.40
7 8 6.969473 GCATGGCAAGTCTAGTTTCTTAATTC 59.031 38.462 0.00 0.00 0.00 2.17
8 9 6.434028 TGCATGGCAAGTCTAGTTTCTTAATT 59.566 34.615 0.00 0.00 34.76 1.40
9 10 5.945784 TGCATGGCAAGTCTAGTTTCTTAAT 59.054 36.000 0.00 0.00 34.76 1.40
10 11 5.181245 GTGCATGGCAAGTCTAGTTTCTTAA 59.819 40.000 0.00 0.00 41.47 1.85
11 12 4.695455 GTGCATGGCAAGTCTAGTTTCTTA 59.305 41.667 0.00 0.00 41.47 2.10
12 13 3.503748 GTGCATGGCAAGTCTAGTTTCTT 59.496 43.478 0.00 0.00 41.47 2.52
13 14 3.077359 GTGCATGGCAAGTCTAGTTTCT 58.923 45.455 0.00 0.00 41.47 2.52
14 15 2.162408 GGTGCATGGCAAGTCTAGTTTC 59.838 50.000 0.00 0.00 41.47 2.78
15 16 2.162681 GGTGCATGGCAAGTCTAGTTT 58.837 47.619 0.00 0.00 41.47 2.66
16 17 1.073763 TGGTGCATGGCAAGTCTAGTT 59.926 47.619 0.00 0.00 41.47 2.24
17 18 0.692476 TGGTGCATGGCAAGTCTAGT 59.308 50.000 0.00 0.00 41.47 2.57
18 19 2.048444 ATGGTGCATGGCAAGTCTAG 57.952 50.000 0.00 0.00 41.47 2.43
19 20 2.512692 AATGGTGCATGGCAAGTCTA 57.487 45.000 0.00 0.00 41.47 2.59
20 21 2.512692 TAATGGTGCATGGCAAGTCT 57.487 45.000 0.00 0.00 41.47 3.24
21 22 3.253230 GTTTAATGGTGCATGGCAAGTC 58.747 45.455 0.00 0.00 41.47 3.01
22 23 2.632028 TGTTTAATGGTGCATGGCAAGT 59.368 40.909 0.00 0.00 41.47 3.16
23 24 3.316071 TGTTTAATGGTGCATGGCAAG 57.684 42.857 0.00 0.00 41.47 4.01
24 25 3.758755 TTGTTTAATGGTGCATGGCAA 57.241 38.095 0.00 0.00 41.47 4.52
25 26 3.758755 TTTGTTTAATGGTGCATGGCA 57.241 38.095 0.00 0.00 35.60 4.92
26 27 5.392286 CAATTTTGTTTAATGGTGCATGGC 58.608 37.500 0.00 0.00 0.00 4.40
27 28 5.392286 GCAATTTTGTTTAATGGTGCATGG 58.608 37.500 0.00 0.00 0.00 3.66
28 29 5.048921 TGGCAATTTTGTTTAATGGTGCATG 60.049 36.000 0.00 0.00 32.41 4.06
29 30 5.068636 TGGCAATTTTGTTTAATGGTGCAT 58.931 33.333 0.00 0.00 32.41 3.96
30 31 4.454678 TGGCAATTTTGTTTAATGGTGCA 58.545 34.783 0.00 0.00 32.41 4.57
31 32 5.180868 TCATGGCAATTTTGTTTAATGGTGC 59.819 36.000 0.00 0.00 0.00 5.01
32 33 6.798315 TCATGGCAATTTTGTTTAATGGTG 57.202 33.333 0.00 0.00 0.00 4.17
33 34 8.099537 TGTATCATGGCAATTTTGTTTAATGGT 58.900 29.630 0.00 0.00 0.00 3.55
34 35 8.489990 TGTATCATGGCAATTTTGTTTAATGG 57.510 30.769 0.00 0.00 0.00 3.16
35 36 9.923786 CATGTATCATGGCAATTTTGTTTAATG 57.076 29.630 0.00 0.00 0.00 1.90
36 37 8.614346 GCATGTATCATGGCAATTTTGTTTAAT 58.386 29.630 10.96 0.00 0.00 1.40
37 38 7.605309 TGCATGTATCATGGCAATTTTGTTTAA 59.395 29.630 10.96 0.00 32.54 1.52
38 39 7.064371 GTGCATGTATCATGGCAATTTTGTTTA 59.936 33.333 10.96 0.00 38.10 2.01
39 40 5.938710 TGCATGTATCATGGCAATTTTGTTT 59.061 32.000 10.96 0.00 32.54 2.83
40 41 5.352016 GTGCATGTATCATGGCAATTTTGTT 59.648 36.000 10.96 0.00 38.10 2.83
41 42 4.871557 GTGCATGTATCATGGCAATTTTGT 59.128 37.500 10.96 0.00 38.10 2.83
42 43 5.113383 AGTGCATGTATCATGGCAATTTTG 58.887 37.500 10.96 0.00 38.10 2.44
43 44 5.347620 AGTGCATGTATCATGGCAATTTT 57.652 34.783 10.96 0.00 38.10 1.82
44 45 5.347620 AAGTGCATGTATCATGGCAATTT 57.652 34.783 10.96 5.95 41.10 1.82
45 46 6.468333 TTAAGTGCATGTATCATGGCAATT 57.532 33.333 16.52 16.52 45.12 2.32
46 47 6.468333 TTTAAGTGCATGTATCATGGCAAT 57.532 33.333 10.96 6.58 38.10 3.56
47 48 5.911378 TTTAAGTGCATGTATCATGGCAA 57.089 34.783 10.96 0.00 38.10 4.52
48 49 5.911378 TTTTAAGTGCATGTATCATGGCA 57.089 34.783 10.96 0.00 0.00 4.92
49 50 7.169035 CAATTTTAAGTGCATGTATCATGGC 57.831 36.000 10.96 5.04 0.00 4.40
62 63 5.295950 TGTGAACCATGGCAATTTTAAGTG 58.704 37.500 13.04 0.00 0.00 3.16
63 64 5.543507 TGTGAACCATGGCAATTTTAAGT 57.456 34.783 13.04 0.00 0.00 2.24
64 65 6.857777 TTTGTGAACCATGGCAATTTTAAG 57.142 33.333 13.04 0.00 0.00 1.85
65 66 7.630242 TTTTTGTGAACCATGGCAATTTTAA 57.370 28.000 13.04 0.00 0.00 1.52
94 95 9.213799 GCAATTCCAATACTTTGACCATAAAAA 57.786 29.630 0.00 0.00 34.60 1.94
95 96 7.821846 GGCAATTCCAATACTTTGACCATAAAA 59.178 33.333 0.00 0.00 34.60 1.52
96 97 7.038729 TGGCAATTCCAATACTTTGACCATAAA 60.039 33.333 0.00 0.00 43.21 1.40
97 98 6.438741 TGGCAATTCCAATACTTTGACCATAA 59.561 34.615 0.00 0.00 43.21 1.90
98 99 5.954752 TGGCAATTCCAATACTTTGACCATA 59.045 36.000 0.00 0.00 43.21 2.74
99 100 4.776837 TGGCAATTCCAATACTTTGACCAT 59.223 37.500 0.00 0.00 43.21 3.55
100 101 4.155709 TGGCAATTCCAATACTTTGACCA 58.844 39.130 0.00 0.00 43.21 4.02
101 102 4.799564 TGGCAATTCCAATACTTTGACC 57.200 40.909 0.00 0.00 43.21 4.02
131 132 9.463443 GTTTGTAGAGCATGACAATTTTAGTTT 57.537 29.630 0.00 0.00 35.57 2.66
132 133 8.850156 AGTTTGTAGAGCATGACAATTTTAGTT 58.150 29.630 0.00 0.00 35.57 2.24
133 134 8.396272 AGTTTGTAGAGCATGACAATTTTAGT 57.604 30.769 0.00 0.00 35.57 2.24
139 140 9.630098 CAATTTTAGTTTGTAGAGCATGACAAT 57.370 29.630 0.00 0.00 35.57 2.71
140 141 7.594758 GCAATTTTAGTTTGTAGAGCATGACAA 59.405 33.333 0.00 0.00 33.81 3.18
141 142 7.083858 GCAATTTTAGTTTGTAGAGCATGACA 58.916 34.615 0.00 0.00 0.00 3.58
142 143 6.528072 GGCAATTTTAGTTTGTAGAGCATGAC 59.472 38.462 0.00 0.00 0.00 3.06
143 144 6.208402 TGGCAATTTTAGTTTGTAGAGCATGA 59.792 34.615 0.00 0.00 0.00 3.07
144 145 6.308766 GTGGCAATTTTAGTTTGTAGAGCATG 59.691 38.462 0.00 0.00 0.00 4.06
145 146 6.015519 TGTGGCAATTTTAGTTTGTAGAGCAT 60.016 34.615 0.00 0.00 0.00 3.79
146 147 5.300539 TGTGGCAATTTTAGTTTGTAGAGCA 59.699 36.000 0.00 0.00 0.00 4.26
147 148 5.768317 TGTGGCAATTTTAGTTTGTAGAGC 58.232 37.500 0.00 0.00 0.00 4.09
148 149 7.538678 GTCATGTGGCAATTTTAGTTTGTAGAG 59.461 37.037 0.00 0.00 0.00 2.43
149 150 7.013750 TGTCATGTGGCAATTTTAGTTTGTAGA 59.986 33.333 0.00 0.00 0.00 2.59
150 151 7.144661 TGTCATGTGGCAATTTTAGTTTGTAG 58.855 34.615 0.00 0.00 0.00 2.74
151 152 7.043961 TGTCATGTGGCAATTTTAGTTTGTA 57.956 32.000 0.00 0.00 0.00 2.41
152 153 5.911752 TGTCATGTGGCAATTTTAGTTTGT 58.088 33.333 0.00 0.00 0.00 2.83
153 154 6.479660 AGTTGTCATGTGGCAATTTTAGTTTG 59.520 34.615 3.11 0.00 42.06 2.93
154 155 6.581712 AGTTGTCATGTGGCAATTTTAGTTT 58.418 32.000 3.11 0.00 42.06 2.66
155 156 6.160576 AGTTGTCATGTGGCAATTTTAGTT 57.839 33.333 3.11 0.00 42.06 2.24
156 157 5.789643 AGTTGTCATGTGGCAATTTTAGT 57.210 34.783 3.11 0.00 42.06 2.24
158 159 7.721402 ACTAAAGTTGTCATGTGGCAATTTTA 58.279 30.769 19.78 19.78 44.11 1.52
159 160 6.581712 ACTAAAGTTGTCATGTGGCAATTTT 58.418 32.000 19.69 19.69 46.35 1.82
160 161 6.160576 ACTAAAGTTGTCATGTGGCAATTT 57.839 33.333 3.11 2.91 42.06 1.82
161 162 5.789643 ACTAAAGTTGTCATGTGGCAATT 57.210 34.783 3.11 0.00 42.06 2.32
162 163 5.789643 AACTAAAGTTGTCATGTGGCAAT 57.210 34.783 3.11 0.00 42.06 3.56
163 164 5.590530 AAACTAAAGTTGTCATGTGGCAA 57.409 34.783 0.00 0.00 38.44 4.52
164 165 6.701145 TTAAACTAAAGTTGTCATGTGGCA 57.299 33.333 0.00 0.00 38.44 4.92
165 166 5.629435 GCTTAAACTAAAGTTGTCATGTGGC 59.371 40.000 0.00 0.00 38.44 5.01
166 167 6.636850 GTGCTTAAACTAAAGTTGTCATGTGG 59.363 38.462 0.00 0.00 38.44 4.17
167 168 7.417612 AGTGCTTAAACTAAAGTTGTCATGTG 58.582 34.615 0.00 0.00 38.44 3.21
168 169 7.568199 AGTGCTTAAACTAAAGTTGTCATGT 57.432 32.000 0.00 0.00 38.44 3.21
169 170 9.546909 CATAGTGCTTAAACTAAAGTTGTCATG 57.453 33.333 0.00 0.00 38.44 3.07
170 171 8.730680 CCATAGTGCTTAAACTAAAGTTGTCAT 58.269 33.333 0.00 0.00 38.44 3.06
171 172 7.308348 GCCATAGTGCTTAAACTAAAGTTGTCA 60.308 37.037 0.00 0.00 38.44 3.58
172 173 7.021790 GCCATAGTGCTTAAACTAAAGTTGTC 58.978 38.462 0.00 0.00 38.44 3.18
173 174 6.488683 TGCCATAGTGCTTAAACTAAAGTTGT 59.511 34.615 0.00 0.00 38.44 3.32
174 175 6.908825 TGCCATAGTGCTTAAACTAAAGTTG 58.091 36.000 0.00 0.00 38.44 3.16
175 176 7.230712 AGTTGCCATAGTGCTTAAACTAAAGTT 59.769 33.333 0.00 0.00 40.50 2.66
176 177 6.715264 AGTTGCCATAGTGCTTAAACTAAAGT 59.285 34.615 0.00 0.00 36.28 2.66
177 178 7.145932 AGTTGCCATAGTGCTTAAACTAAAG 57.854 36.000 0.00 0.00 36.28 1.85
178 179 7.662258 TGTAGTTGCCATAGTGCTTAAACTAAA 59.338 33.333 0.00 0.00 36.28 1.85
179 180 7.162761 TGTAGTTGCCATAGTGCTTAAACTAA 58.837 34.615 0.00 0.00 36.28 2.24
180 181 6.703319 TGTAGTTGCCATAGTGCTTAAACTA 58.297 36.000 0.00 0.00 37.08 2.24
181 182 5.556915 TGTAGTTGCCATAGTGCTTAAACT 58.443 37.500 0.00 0.00 32.07 2.66
182 183 5.411669 ACTGTAGTTGCCATAGTGCTTAAAC 59.588 40.000 0.00 0.00 0.00 2.01
183 184 5.411361 CACTGTAGTTGCCATAGTGCTTAAA 59.589 40.000 0.00 0.00 33.28 1.52
184 185 4.935205 CACTGTAGTTGCCATAGTGCTTAA 59.065 41.667 0.00 0.00 33.28 1.85
185 186 4.020573 ACACTGTAGTTGCCATAGTGCTTA 60.021 41.667 0.00 0.00 41.74 3.09
186 187 3.244561 ACACTGTAGTTGCCATAGTGCTT 60.245 43.478 0.00 0.00 41.74 3.91
187 188 2.303022 ACACTGTAGTTGCCATAGTGCT 59.697 45.455 0.00 0.00 41.74 4.40
188 189 2.699954 ACACTGTAGTTGCCATAGTGC 58.300 47.619 0.00 0.00 41.74 4.40
189 190 5.699001 TGTTTACACTGTAGTTGCCATAGTG 59.301 40.000 0.00 0.00 43.20 2.74
190 191 5.860611 TGTTTACACTGTAGTTGCCATAGT 58.139 37.500 0.00 0.00 0.00 2.12
191 192 6.593770 TGATGTTTACACTGTAGTTGCCATAG 59.406 38.462 0.00 0.00 0.00 2.23
192 193 6.468543 TGATGTTTACACTGTAGTTGCCATA 58.531 36.000 0.00 0.00 0.00 2.74
193 194 5.312895 TGATGTTTACACTGTAGTTGCCAT 58.687 37.500 0.00 0.00 0.00 4.40
194 195 4.709250 TGATGTTTACACTGTAGTTGCCA 58.291 39.130 0.00 0.00 0.00 4.92
195 196 5.391950 CCATGATGTTTACACTGTAGTTGCC 60.392 44.000 0.00 0.00 0.00 4.52
196 197 5.631026 CCATGATGTTTACACTGTAGTTGC 58.369 41.667 0.00 0.00 0.00 4.17
197 198 5.181056 TGCCATGATGTTTACACTGTAGTTG 59.819 40.000 0.00 0.00 0.00 3.16
198 199 5.312895 TGCCATGATGTTTACACTGTAGTT 58.687 37.500 0.00 0.00 0.00 2.24
199 200 4.905429 TGCCATGATGTTTACACTGTAGT 58.095 39.130 0.00 0.00 0.00 2.73
200 201 5.412594 AGTTGCCATGATGTTTACACTGTAG 59.587 40.000 0.00 0.00 0.00 2.74
201 202 5.312895 AGTTGCCATGATGTTTACACTGTA 58.687 37.500 0.00 0.00 0.00 2.74
202 203 4.144297 AGTTGCCATGATGTTTACACTGT 58.856 39.130 0.00 0.00 0.00 3.55
203 204 4.771590 AGTTGCCATGATGTTTACACTG 57.228 40.909 0.00 0.00 0.00 3.66
204 205 5.789643 AAAGTTGCCATGATGTTTACACT 57.210 34.783 0.00 0.00 0.00 3.55
205 206 5.177327 CCAAAAGTTGCCATGATGTTTACAC 59.823 40.000 0.00 0.00 0.00 2.90
206 207 5.295950 CCAAAAGTTGCCATGATGTTTACA 58.704 37.500 0.00 0.00 0.00 2.41
207 208 4.690280 CCCAAAAGTTGCCATGATGTTTAC 59.310 41.667 0.00 0.00 0.00 2.01
208 209 4.590647 TCCCAAAAGTTGCCATGATGTTTA 59.409 37.500 0.00 0.00 0.00 2.01
209 210 3.390639 TCCCAAAAGTTGCCATGATGTTT 59.609 39.130 0.00 0.00 0.00 2.83
210 211 2.971330 TCCCAAAAGTTGCCATGATGTT 59.029 40.909 0.00 0.00 0.00 2.71
211 212 2.607499 TCCCAAAAGTTGCCATGATGT 58.393 42.857 0.00 0.00 0.00 3.06
212 213 3.681593 TTCCCAAAAGTTGCCATGATG 57.318 42.857 0.00 0.00 0.00 3.07
213 214 4.703379 TTTTCCCAAAAGTTGCCATGAT 57.297 36.364 0.00 0.00 0.00 2.45
214 215 4.494091 TTTTTCCCAAAAGTTGCCATGA 57.506 36.364 0.00 0.00 0.00 3.07
236 237 8.789881 TGTTGATATGTTTCGACGAAATTTTT 57.210 26.923 24.48 11.42 33.97 1.94
237 238 8.849490 CATGTTGATATGTTTCGACGAAATTTT 58.151 29.630 24.48 14.82 33.97 1.82
238 239 7.484641 CCATGTTGATATGTTTCGACGAAATTT 59.515 33.333 24.48 16.99 33.97 1.82
239 240 6.966632 CCATGTTGATATGTTTCGACGAAATT 59.033 34.615 24.48 17.31 33.97 1.82
240 241 6.458206 CCCATGTTGATATGTTTCGACGAAAT 60.458 38.462 24.48 13.13 33.97 2.17
241 242 5.163804 CCCATGTTGATATGTTTCGACGAAA 60.164 40.000 18.66 18.66 33.42 3.46
242 243 4.331443 CCCATGTTGATATGTTTCGACGAA 59.669 41.667 6.10 6.10 33.42 3.85
243 244 3.868661 CCCATGTTGATATGTTTCGACGA 59.131 43.478 0.00 0.00 33.42 4.20
244 245 3.002246 CCCCATGTTGATATGTTTCGACG 59.998 47.826 0.00 0.00 33.42 5.12
245 246 3.945285 ACCCCATGTTGATATGTTTCGAC 59.055 43.478 0.00 0.00 0.00 4.20
246 247 4.080582 AGACCCCATGTTGATATGTTTCGA 60.081 41.667 0.00 0.00 0.00 3.71
247 248 4.199310 AGACCCCATGTTGATATGTTTCG 58.801 43.478 0.00 0.00 0.00 3.46
248 249 6.357367 ACTAGACCCCATGTTGATATGTTTC 58.643 40.000 0.00 0.00 0.00 2.78
249 250 6.327386 ACTAGACCCCATGTTGATATGTTT 57.673 37.500 0.00 0.00 0.00 2.83
250 251 5.975988 ACTAGACCCCATGTTGATATGTT 57.024 39.130 0.00 0.00 0.00 2.71
251 252 5.975988 AACTAGACCCCATGTTGATATGT 57.024 39.130 0.00 0.00 0.00 2.29
252 253 6.828273 TCAAAACTAGACCCCATGTTGATATG 59.172 38.462 0.00 0.00 0.00 1.78
253 254 6.969043 TCAAAACTAGACCCCATGTTGATAT 58.031 36.000 0.00 0.00 0.00 1.63
254 255 6.381498 TCAAAACTAGACCCCATGTTGATA 57.619 37.500 0.00 0.00 0.00 2.15
255 256 5.255397 TCAAAACTAGACCCCATGTTGAT 57.745 39.130 0.00 0.00 0.00 2.57
256 257 4.715534 TCAAAACTAGACCCCATGTTGA 57.284 40.909 0.00 0.00 0.00 3.18
257 258 5.070001 TCTTCAAAACTAGACCCCATGTTG 58.930 41.667 0.00 0.00 0.00 3.33
258 259 5.319043 TCTTCAAAACTAGACCCCATGTT 57.681 39.130 0.00 0.00 0.00 2.71
259 260 4.993705 TCTTCAAAACTAGACCCCATGT 57.006 40.909 0.00 0.00 0.00 3.21
260 261 5.749462 AGATCTTCAAAACTAGACCCCATG 58.251 41.667 0.00 0.00 0.00 3.66
261 262 5.395768 CGAGATCTTCAAAACTAGACCCCAT 60.396 44.000 0.00 0.00 0.00 4.00
262 263 4.081642 CGAGATCTTCAAAACTAGACCCCA 60.082 45.833 0.00 0.00 0.00 4.96
263 264 4.081586 ACGAGATCTTCAAAACTAGACCCC 60.082 45.833 0.00 0.00 0.00 4.95
264 265 5.074584 ACGAGATCTTCAAAACTAGACCC 57.925 43.478 0.00 0.00 0.00 4.46
265 266 4.794246 CGACGAGATCTTCAAAACTAGACC 59.206 45.833 0.00 0.00 0.00 3.85
266 267 5.629097 TCGACGAGATCTTCAAAACTAGAC 58.371 41.667 0.00 0.00 0.00 2.59
267 268 5.642491 TCTCGACGAGATCTTCAAAACTAGA 59.358 40.000 23.27 0.00 33.35 2.43
268 269 5.735427 GTCTCGACGAGATCTTCAAAACTAG 59.265 44.000 28.81 0.00 40.98 2.57
269 270 5.629097 GTCTCGACGAGATCTTCAAAACTA 58.371 41.667 28.81 0.33 40.98 2.24
270 271 4.477780 GTCTCGACGAGATCTTCAAAACT 58.522 43.478 28.81 0.00 40.98 2.66
271 272 4.809455 GTCTCGACGAGATCTTCAAAAC 57.191 45.455 28.81 10.84 40.98 2.43
285 286 3.777478 TCACCATTAAATCCGTCTCGAC 58.223 45.455 0.00 0.00 0.00 4.20
286 287 4.459390 TTCACCATTAAATCCGTCTCGA 57.541 40.909 0.00 0.00 0.00 4.04
287 288 5.321516 GTTTTCACCATTAAATCCGTCTCG 58.678 41.667 0.00 0.00 0.00 4.04
288 289 5.321516 CGTTTTCACCATTAAATCCGTCTC 58.678 41.667 0.00 0.00 0.00 3.36
289 290 4.155280 CCGTTTTCACCATTAAATCCGTCT 59.845 41.667 0.00 0.00 0.00 4.18
290 291 4.154556 TCCGTTTTCACCATTAAATCCGTC 59.845 41.667 0.00 0.00 0.00 4.79
291 292 4.073549 TCCGTTTTCACCATTAAATCCGT 58.926 39.130 0.00 0.00 0.00 4.69
292 293 4.688511 TCCGTTTTCACCATTAAATCCG 57.311 40.909 0.00 0.00 0.00 4.18
293 294 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
299 300 9.331282 TCAAATTAAAAATCCGTTTTCACCATT 57.669 25.926 0.00 0.00 40.07 3.16
300 301 8.894768 TCAAATTAAAAATCCGTTTTCACCAT 57.105 26.923 0.00 0.00 40.07 3.55
301 302 8.894768 ATCAAATTAAAAATCCGTTTTCACCA 57.105 26.923 0.00 0.00 40.07 4.17
334 335 9.233649 TCGGCTTAAAAATGTTTTATCTCCTAA 57.766 29.630 0.00 0.00 0.00 2.69
335 336 8.795842 TCGGCTTAAAAATGTTTTATCTCCTA 57.204 30.769 0.00 0.00 0.00 2.94
336 337 7.696992 TCGGCTTAAAAATGTTTTATCTCCT 57.303 32.000 0.00 0.00 0.00 3.69
337 338 8.751302 TTTCGGCTTAAAAATGTTTTATCTCC 57.249 30.769 0.00 0.00 0.00 3.71
339 340 8.708742 GCTTTTCGGCTTAAAAATGTTTTATCT 58.291 29.630 0.00 0.00 0.00 1.98
340 341 8.491950 TGCTTTTCGGCTTAAAAATGTTTTATC 58.508 29.630 0.00 0.00 0.00 1.75
341 342 8.371770 TGCTTTTCGGCTTAAAAATGTTTTAT 57.628 26.923 0.00 0.00 0.00 1.40
342 343 7.772332 TGCTTTTCGGCTTAAAAATGTTTTA 57.228 28.000 0.00 0.00 0.00 1.52
343 344 6.670077 TGCTTTTCGGCTTAAAAATGTTTT 57.330 29.167 0.00 0.00 0.00 2.43
344 345 6.670077 TTGCTTTTCGGCTTAAAAATGTTT 57.330 29.167 0.00 0.00 0.00 2.83
345 346 6.670077 TTTGCTTTTCGGCTTAAAAATGTT 57.330 29.167 0.00 0.00 0.00 2.71
346 347 6.670077 TTTTGCTTTTCGGCTTAAAAATGT 57.330 29.167 0.00 0.00 0.00 2.71
369 370 6.585695 ACAGATGACATGAGCAGAATTTTT 57.414 33.333 0.00 0.00 0.00 1.94
370 371 6.208007 TGAACAGATGACATGAGCAGAATTTT 59.792 34.615 0.00 0.00 0.00 1.82
371 372 5.708697 TGAACAGATGACATGAGCAGAATTT 59.291 36.000 0.00 0.00 0.00 1.82
372 373 5.250982 TGAACAGATGACATGAGCAGAATT 58.749 37.500 0.00 0.00 0.00 2.17
373 374 4.840271 TGAACAGATGACATGAGCAGAAT 58.160 39.130 0.00 0.00 0.00 2.40
374 375 4.276058 TGAACAGATGACATGAGCAGAA 57.724 40.909 0.00 0.00 0.00 3.02
375 376 3.967332 TGAACAGATGACATGAGCAGA 57.033 42.857 0.00 0.00 0.00 4.26
376 377 4.208666 CGTATGAACAGATGACATGAGCAG 59.791 45.833 0.00 0.00 0.00 4.24
377 378 4.114794 CGTATGAACAGATGACATGAGCA 58.885 43.478 0.00 0.00 0.00 4.26
378 379 4.026228 CACGTATGAACAGATGACATGAGC 60.026 45.833 0.00 0.00 0.00 4.26
379 380 4.505556 CCACGTATGAACAGATGACATGAG 59.494 45.833 0.00 0.00 0.00 2.90
380 381 4.432712 CCACGTATGAACAGATGACATGA 58.567 43.478 0.00 0.00 0.00 3.07
381 382 3.001634 GCCACGTATGAACAGATGACATG 59.998 47.826 0.00 0.00 0.00 3.21
382 383 3.198068 GCCACGTATGAACAGATGACAT 58.802 45.455 0.00 0.00 0.00 3.06
383 384 2.028567 TGCCACGTATGAACAGATGACA 60.029 45.455 0.00 0.00 0.00 3.58
384 385 2.616960 TGCCACGTATGAACAGATGAC 58.383 47.619 0.00 0.00 0.00 3.06
385 386 3.326836 TTGCCACGTATGAACAGATGA 57.673 42.857 0.00 0.00 0.00 2.92
386 387 4.418013 TTTTGCCACGTATGAACAGATG 57.582 40.909 0.00 0.00 0.00 2.90
387 388 4.699735 TCATTTTGCCACGTATGAACAGAT 59.300 37.500 0.00 0.00 0.00 2.90
388 389 4.068599 TCATTTTGCCACGTATGAACAGA 58.931 39.130 0.00 0.00 0.00 3.41
389 390 4.083324 ACTCATTTTGCCACGTATGAACAG 60.083 41.667 0.00 0.00 0.00 3.16
390 391 3.818210 ACTCATTTTGCCACGTATGAACA 59.182 39.130 0.00 0.00 0.00 3.18
391 392 4.158384 CACTCATTTTGCCACGTATGAAC 58.842 43.478 0.00 0.00 0.00 3.18
392 393 3.190327 CCACTCATTTTGCCACGTATGAA 59.810 43.478 0.00 0.00 0.00 2.57
393 394 2.746904 CCACTCATTTTGCCACGTATGA 59.253 45.455 0.00 0.00 0.00 2.15
394 395 2.487762 ACCACTCATTTTGCCACGTATG 59.512 45.455 0.00 0.00 0.00 2.39
395 396 2.487762 CACCACTCATTTTGCCACGTAT 59.512 45.455 0.00 0.00 0.00 3.06
396 397 1.876799 CACCACTCATTTTGCCACGTA 59.123 47.619 0.00 0.00 0.00 3.57
397 398 0.667993 CACCACTCATTTTGCCACGT 59.332 50.000 0.00 0.00 0.00 4.49
398 399 0.950836 TCACCACTCATTTTGCCACG 59.049 50.000 0.00 0.00 0.00 4.94
399 400 2.353011 CCATCACCACTCATTTTGCCAC 60.353 50.000 0.00 0.00 0.00 5.01
400 401 1.894466 CCATCACCACTCATTTTGCCA 59.106 47.619 0.00 0.00 0.00 4.92
401 402 2.165030 CTCCATCACCACTCATTTTGCC 59.835 50.000 0.00 0.00 0.00 4.52
402 403 2.165030 CCTCCATCACCACTCATTTTGC 59.835 50.000 0.00 0.00 0.00 3.68
403 404 2.165030 GCCTCCATCACCACTCATTTTG 59.835 50.000 0.00 0.00 0.00 2.44
404 405 2.450476 GCCTCCATCACCACTCATTTT 58.550 47.619 0.00 0.00 0.00 1.82
405 406 1.679944 CGCCTCCATCACCACTCATTT 60.680 52.381 0.00 0.00 0.00 2.32
406 407 0.107508 CGCCTCCATCACCACTCATT 60.108 55.000 0.00 0.00 0.00 2.57
407 408 1.267574 ACGCCTCCATCACCACTCAT 61.268 55.000 0.00 0.00 0.00 2.90
408 409 1.913262 ACGCCTCCATCACCACTCA 60.913 57.895 0.00 0.00 0.00 3.41
409 410 1.448540 CACGCCTCCATCACCACTC 60.449 63.158 0.00 0.00 0.00 3.51
410 411 2.217038 ACACGCCTCCATCACCACT 61.217 57.895 0.00 0.00 0.00 4.00
411 412 2.034879 CACACGCCTCCATCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
412 413 2.347114 CACACGCCTCCATCACCA 59.653 61.111 0.00 0.00 0.00 4.17
413 414 2.436646 CCACACGCCTCCATCACC 60.437 66.667 0.00 0.00 0.00 4.02
414 415 2.436646 CCCACACGCCTCCATCAC 60.437 66.667 0.00 0.00 0.00 3.06
415 416 4.408821 GCCCACACGCCTCCATCA 62.409 66.667 0.00 0.00 0.00 3.07
427 428 4.992511 TAACGCCCACACGCCCAC 62.993 66.667 0.00 0.00 36.19 4.61
428 429 4.690719 CTAACGCCCACACGCCCA 62.691 66.667 0.00 0.00 36.19 5.36
429 430 4.692475 ACTAACGCCCACACGCCC 62.692 66.667 0.00 0.00 36.19 6.13
430 431 1.788067 AAAACTAACGCCCACACGCC 61.788 55.000 0.00 0.00 36.19 5.68
431 432 0.029700 AAAAACTAACGCCCACACGC 59.970 50.000 0.00 0.00 36.19 5.34
448 449 9.849166 GATCGGGTAACAATTTTAGAATGAAAA 57.151 29.630 0.00 0.00 39.74 2.29
449 450 9.238368 AGATCGGGTAACAATTTTAGAATGAAA 57.762 29.630 0.00 0.00 39.74 2.69
450 451 8.801882 AGATCGGGTAACAATTTTAGAATGAA 57.198 30.769 0.00 0.00 39.74 2.57
451 452 9.542462 CTAGATCGGGTAACAATTTTAGAATGA 57.458 33.333 0.00 0.00 39.74 2.57
452 453 9.326413 ACTAGATCGGGTAACAATTTTAGAATG 57.674 33.333 0.00 0.00 39.74 2.67
453 454 9.326413 CACTAGATCGGGTAACAATTTTAGAAT 57.674 33.333 0.00 0.00 39.74 2.40
454 455 7.279313 GCACTAGATCGGGTAACAATTTTAGAA 59.721 37.037 0.00 0.00 39.74 2.10
455 456 6.759827 GCACTAGATCGGGTAACAATTTTAGA 59.240 38.462 0.00 0.00 39.74 2.10
456 457 6.761714 AGCACTAGATCGGGTAACAATTTTAG 59.238 38.462 0.00 0.00 39.74 1.85
483 484 2.640316 AGCTTGAACTCGAAAACCCT 57.360 45.000 0.00 0.00 0.00 4.34
486 487 3.751698 ACCCATAGCTTGAACTCGAAAAC 59.248 43.478 0.00 0.00 0.00 2.43
498 500 1.065418 CAGAACCCGAACCCATAGCTT 60.065 52.381 0.00 0.00 0.00 3.74
499 501 0.541863 CAGAACCCGAACCCATAGCT 59.458 55.000 0.00 0.00 0.00 3.32
524 526 2.137177 GACCCTAAGCCTGCACCCAA 62.137 60.000 0.00 0.00 0.00 4.12
543 545 2.285977 CCCGAATCCTAAAAACCCGAG 58.714 52.381 0.00 0.00 0.00 4.63
553 555 3.836562 GGATACCTAAAGCCCGAATCCTA 59.163 47.826 0.00 0.00 0.00 2.94
554 556 2.638363 GGATACCTAAAGCCCGAATCCT 59.362 50.000 0.00 0.00 0.00 3.24
588 590 3.278367 TGTACTGCTCGTACTCACAAC 57.722 47.619 14.83 0.00 46.89 3.32
590 592 2.228103 CCTTGTACTGCTCGTACTCACA 59.772 50.000 14.83 0.00 46.89 3.58
596 598 1.509463 CGGCCTTGTACTGCTCGTA 59.491 57.895 0.00 0.00 0.00 3.43
628 630 2.227388 GTCACTGGAGCAAAGGTTGATG 59.773 50.000 0.00 0.00 0.00 3.07
647 649 2.202324 GTCGTCGCTGTCGGAGTC 60.202 66.667 0.00 0.00 36.13 3.36
657 659 3.071459 CTGTTGCCATCGTCGTCGC 62.071 63.158 0.00 0.00 36.96 5.19
658 660 1.406219 CTCTGTTGCCATCGTCGTCG 61.406 60.000 0.00 0.00 38.55 5.12
665 667 2.593468 TAGCCCGCTCTGTTGCCATC 62.593 60.000 0.00 0.00 0.00 3.51
674 676 2.043450 ACTGCTCTAGCCCGCTCT 60.043 61.111 0.00 0.00 41.18 4.09
699 701 2.123597 TACCGCTATGGCCCTCGT 60.124 61.111 0.00 0.00 43.94 4.18
713 715 5.490213 CATTTAATTCTCAACGCGTCTACC 58.510 41.667 14.44 0.00 0.00 3.18
716 718 3.435327 TGCATTTAATTCTCAACGCGTCT 59.565 39.130 14.44 0.00 0.00 4.18
718 720 3.188460 AGTGCATTTAATTCTCAACGCGT 59.812 39.130 5.58 5.58 0.00 6.01
719 721 3.747193 AGTGCATTTAATTCTCAACGCG 58.253 40.909 3.53 3.53 0.00 6.01
720 722 4.722194 TGAGTGCATTTAATTCTCAACGC 58.278 39.130 0.00 0.00 33.18 4.84
739 1168 5.067936 ACTCTCACCGTAAATCTACCATGAG 59.932 44.000 0.00 0.00 37.61 2.90
851 1291 0.887387 GGTGGCTACGCTGAAAACCA 60.887 55.000 0.00 0.00 0.00 3.67
854 1295 0.887387 GTGGGTGGCTACGCTGAAAA 60.887 55.000 17.92 0.00 40.18 2.29
910 1351 5.614308 TGCTTCCACTGACATCCTTATATG 58.386 41.667 0.00 0.00 0.00 1.78
935 1376 0.470766 TGAAACGCTGGGTAAGGTGT 59.529 50.000 0.00 0.00 0.00 4.16
938 1379 2.280628 GATCTGAAACGCTGGGTAAGG 58.719 52.381 0.00 0.00 0.00 2.69
946 1395 3.256879 TCTGAACTCTGATCTGAAACGCT 59.743 43.478 3.72 0.00 0.00 5.07
950 1399 5.300752 GTGGTTCTGAACTCTGATCTGAAA 58.699 41.667 19.05 0.00 36.78 2.69
952 1401 3.259374 GGTGGTTCTGAACTCTGATCTGA 59.741 47.826 19.05 2.03 0.00 3.27
954 1403 3.513515 GAGGTGGTTCTGAACTCTGATCT 59.486 47.826 19.05 7.49 0.00 2.75
962 1411 2.147150 GCTCTTGAGGTGGTTCTGAAC 58.853 52.381 12.05 12.05 0.00 3.18
978 1427 0.242286 CTGTACTCTGCACACGCTCT 59.758 55.000 0.00 0.00 39.64 4.09
982 1431 1.988467 CATGTCTGTACTCTGCACACG 59.012 52.381 0.00 0.00 0.00 4.49
1055 1504 6.095377 CCATTAAAACAAGAGTTGGATCTGC 58.905 40.000 0.00 0.00 38.17 4.26
1058 1513 6.024552 TGCCATTAAAACAAGAGTTGGATC 57.975 37.500 0.00 0.00 38.17 3.36
1115 1570 9.959721 ACCTGAATACACAGTGAAATAAATACT 57.040 29.630 7.81 0.00 36.30 2.12
1122 1577 5.827797 ACAACACCTGAATACACAGTGAAAT 59.172 36.000 7.81 0.00 36.30 2.17
1126 1581 3.303990 GCACAACACCTGAATACACAGTG 60.304 47.826 0.00 0.00 36.30 3.66
1128 1583 3.141398 AGCACAACACCTGAATACACAG 58.859 45.455 0.00 0.00 37.61 3.66
1130 1585 3.815401 AGAAGCACAACACCTGAATACAC 59.185 43.478 0.00 0.00 0.00 2.90
1207 1686 1.755380 GGGCAGGTTATGTAGTCGACT 59.245 52.381 23.66 23.66 0.00 4.18
1237 1716 2.435059 GCCGGGAGCTTCTGTGAC 60.435 66.667 2.18 0.00 38.99 3.67
1303 1782 2.226330 CAAGTTTGGTTGATCCCGTCA 58.774 47.619 0.00 0.00 34.77 4.35
1331 1810 4.161565 AGTTACAACACTGTCTGAACTGGA 59.838 41.667 0.00 0.00 32.88 3.86
1374 1860 3.784701 ACGTACATTGTCTAGCTCCAG 57.215 47.619 0.00 0.00 0.00 3.86
1378 1864 5.638783 GACAAGTACGTACATTGTCTAGCT 58.361 41.667 34.19 19.49 45.91 3.32
1393 1879 7.279981 TCACATTATTACTGCCATGACAAGTAC 59.720 37.037 0.00 0.00 0.00 2.73
1395 1881 6.094048 GTCACATTATTACTGCCATGACAAGT 59.906 38.462 0.00 0.00 36.18 3.16
1403 1892 6.264292 ACAACTTTGTCACATTATTACTGCCA 59.736 34.615 0.00 0.00 36.50 4.92
1425 1914 5.378292 TGCTTTATCCGCAAAACATACAA 57.622 34.783 0.00 0.00 33.87 2.41
1430 1919 3.254411 TGACATGCTTTATCCGCAAAACA 59.746 39.130 0.00 0.00 41.26 2.83
1464 1953 3.910170 GCGTACTCGTCGATAATGCATAA 59.090 43.478 0.00 0.00 39.49 1.90
1467 1956 1.750351 GCGTACTCGTCGATAATGCA 58.250 50.000 13.43 0.00 39.49 3.96
1469 1958 0.695943 GCGCGTACTCGTCGATAATG 59.304 55.000 8.43 0.00 38.23 1.90
1470 1959 0.305617 TGCGCGTACTCGTCGATAAT 59.694 50.000 8.43 0.00 38.23 1.28
1487 1976 4.950050 CGGGAGGGAATATCTGTATATGC 58.050 47.826 0.00 0.00 0.00 3.14
1504 1993 1.078214 TCATTGAAGCTGCCGGGAG 60.078 57.895 20.23 20.23 0.00 4.30
1505 1994 1.078214 CTCATTGAAGCTGCCGGGA 60.078 57.895 2.18 0.00 0.00 5.14
1506 1995 2.768492 GCTCATTGAAGCTGCCGGG 61.768 63.158 2.18 0.00 39.27 5.73
1507 1996 2.768492 GGCTCATTGAAGCTGCCGG 61.768 63.158 0.00 0.00 42.13 6.13
1508 1997 2.768492 GGGCTCATTGAAGCTGCCG 61.768 63.158 8.16 0.00 44.07 5.69
1509 1998 0.107017 TAGGGCTCATTGAAGCTGCC 60.107 55.000 6.18 6.18 42.13 4.85
1520 2009 4.027437 ACCAAAACAACTTTTAGGGCTCA 58.973 39.130 0.00 0.00 0.00 4.26
1551 2040 4.900054 ACGTTATTATTACCCTCCTCTGCT 59.100 41.667 0.00 0.00 0.00 4.24
1552 2041 5.211174 ACGTTATTATTACCCTCCTCTGC 57.789 43.478 0.00 0.00 0.00 4.26
1553 2042 6.376978 CGTACGTTATTATTACCCTCCTCTG 58.623 44.000 7.22 0.00 0.00 3.35
1554 2043 5.474876 CCGTACGTTATTATTACCCTCCTCT 59.525 44.000 15.21 0.00 0.00 3.69
1555 2044 5.241728 ACCGTACGTTATTATTACCCTCCTC 59.758 44.000 15.21 0.00 0.00 3.71
1556 2045 5.140454 ACCGTACGTTATTATTACCCTCCT 58.860 41.667 15.21 0.00 0.00 3.69
1557 2046 5.453567 ACCGTACGTTATTATTACCCTCC 57.546 43.478 15.21 0.00 0.00 4.30
1560 2049 6.977213 TCCTTACCGTACGTTATTATTACCC 58.023 40.000 15.21 0.00 0.00 3.69
1562 2051 7.138736 TGCTCCTTACCGTACGTTATTATTAC 58.861 38.462 15.21 0.00 0.00 1.89
1563 2052 7.228507 TCTGCTCCTTACCGTACGTTATTATTA 59.771 37.037 15.21 0.00 0.00 0.98
1565 2054 5.532406 TCTGCTCCTTACCGTACGTTATTAT 59.468 40.000 15.21 0.00 0.00 1.28
1566 2055 4.881273 TCTGCTCCTTACCGTACGTTATTA 59.119 41.667 15.21 0.00 0.00 0.98
1568 2057 3.282021 TCTGCTCCTTACCGTACGTTAT 58.718 45.455 15.21 1.72 0.00 1.89
1569 2058 2.679837 CTCTGCTCCTTACCGTACGTTA 59.320 50.000 15.21 0.35 0.00 3.18
1572 2061 1.331138 CTCTCTGCTCCTTACCGTACG 59.669 57.143 8.69 8.69 0.00 3.67
1573 2062 1.065851 GCTCTCTGCTCCTTACCGTAC 59.934 57.143 0.00 0.00 38.95 3.67
1574 2063 1.390565 GCTCTCTGCTCCTTACCGTA 58.609 55.000 0.00 0.00 38.95 4.02
1607 2105 9.525007 CGCTTTAATTGTACGGTAATCATTATC 57.475 33.333 0.00 0.00 0.00 1.75
1612 2110 5.004630 CGACGCTTTAATTGTACGGTAATCA 59.995 40.000 0.00 0.00 0.00 2.57
1618 2116 4.509915 AATCGACGCTTTAATTGTACGG 57.490 40.909 0.00 0.00 0.00 4.02
1630 2128 2.729882 GTGCCGATTTATAATCGACGCT 59.270 45.455 19.94 0.00 43.59 5.07
1632 2130 2.975193 TCGTGCCGATTTATAATCGACG 59.025 45.455 19.94 20.24 43.59 5.12
1636 2134 3.741344 AGCTGTCGTGCCGATTTATAATC 59.259 43.478 0.67 0.00 38.42 1.75
1648 2146 4.380628 GCACAGCAGCTGTCGTGC 62.381 66.667 32.40 32.40 43.43 5.34
1665 2163 4.156190 AGACTGACGTGATAACCACTACAG 59.844 45.833 0.00 0.00 44.23 2.74
1757 2259 4.649674 AGATGCAGAAAAATGCCAGATGAT 59.350 37.500 0.00 0.00 45.91 2.45
1865 2376 8.121305 TGATGATTTTTGCTGTAGGTTGTAAT 57.879 30.769 0.00 0.00 0.00 1.89
1924 2467 2.516930 GCAGTGGCTGTGTGGTGT 60.517 61.111 0.00 0.00 36.96 4.16
1934 2477 0.950116 GCCATGAGAATAGCAGTGGC 59.050 55.000 0.00 0.00 44.37 5.01
1935 2478 2.336945 TGCCATGAGAATAGCAGTGG 57.663 50.000 0.00 0.00 0.00 4.00
1936 2479 3.276857 AGTTGCCATGAGAATAGCAGTG 58.723 45.455 0.00 0.00 36.44 3.66
1937 2480 3.641434 AGTTGCCATGAGAATAGCAGT 57.359 42.857 0.00 0.00 36.44 4.40
1938 2481 4.445453 TGTAGTTGCCATGAGAATAGCAG 58.555 43.478 0.00 0.00 36.44 4.24
1939 2482 4.445453 CTGTAGTTGCCATGAGAATAGCA 58.555 43.478 0.00 0.00 0.00 3.49
1940 2483 3.249559 GCTGTAGTTGCCATGAGAATAGC 59.750 47.826 0.00 0.00 0.00 2.97
1941 2484 4.445453 TGCTGTAGTTGCCATGAGAATAG 58.555 43.478 0.00 0.00 0.00 1.73
1942 2485 4.486125 TGCTGTAGTTGCCATGAGAATA 57.514 40.909 0.00 0.00 0.00 1.75
1943 2486 3.354948 TGCTGTAGTTGCCATGAGAAT 57.645 42.857 0.00 0.00 0.00 2.40
1944 2487 2.857186 TGCTGTAGTTGCCATGAGAA 57.143 45.000 0.00 0.00 0.00 2.87
1945 2488 2.857186 TTGCTGTAGTTGCCATGAGA 57.143 45.000 0.00 0.00 0.00 3.27
1946 2489 3.921119 TTTTGCTGTAGTTGCCATGAG 57.079 42.857 0.00 0.00 0.00 2.90
1947 2490 3.243704 GGTTTTTGCTGTAGTTGCCATGA 60.244 43.478 0.00 0.00 0.00 3.07
1948 2491 3.059166 GGTTTTTGCTGTAGTTGCCATG 58.941 45.455 0.00 0.00 0.00 3.66
1949 2492 2.697751 TGGTTTTTGCTGTAGTTGCCAT 59.302 40.909 0.00 0.00 0.00 4.40
1950 2493 2.103373 TGGTTTTTGCTGTAGTTGCCA 58.897 42.857 0.00 0.00 0.00 4.92
1951 2494 2.880963 TGGTTTTTGCTGTAGTTGCC 57.119 45.000 0.00 0.00 0.00 4.52
1952 2495 3.976169 TGATGGTTTTTGCTGTAGTTGC 58.024 40.909 0.00 0.00 0.00 4.17
1953 2496 5.531634 ACATGATGGTTTTTGCTGTAGTTG 58.468 37.500 0.00 0.00 0.00 3.16
1954 2497 5.789643 ACATGATGGTTTTTGCTGTAGTT 57.210 34.783 0.00 0.00 0.00 2.24
1955 2498 5.278957 GGAACATGATGGTTTTTGCTGTAGT 60.279 40.000 0.00 0.00 0.00 2.73
1989 2532 4.872691 ACACATCTTCGGATCTTTGTCATC 59.127 41.667 0.00 0.00 31.35 2.92
2017 2560 3.267483 GCCTAAGGCTCGTGTATTTTGA 58.733 45.455 0.00 0.00 46.69 2.69
2071 2628 1.470890 CCGAAGAGACAGACAGAGGAC 59.529 57.143 0.00 0.00 0.00 3.85
2075 2632 1.876664 CGCCGAAGAGACAGACAGA 59.123 57.895 0.00 0.00 0.00 3.41
2076 2633 1.803519 GCGCCGAAGAGACAGACAG 60.804 63.158 0.00 0.00 0.00 3.51
2077 2634 2.258591 GCGCCGAAGAGACAGACA 59.741 61.111 0.00 0.00 0.00 3.41
2078 2635 2.507324 GGCGCCGAAGAGACAGAC 60.507 66.667 12.58 0.00 0.00 3.51
2138 2695 1.899814 TGATCAAGAAGGTACCAGCGT 59.100 47.619 15.94 0.25 0.00 5.07
2150 2707 4.019858 CAGACCCTCAGTACTGATCAAGA 58.980 47.826 25.35 2.73 39.13 3.02
2187 2744 4.142469 GGTAAAAGACAATAATGCTGCCGT 60.142 41.667 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.