>input_sequence_83634
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--------ATGGCCACCTCCAGACTCCACATCGCTTGCGCTCTCCTCCTCGCTGGTAGGCAAAG------CAGATCCAAC
TCTTGTTTTAATGGCAGTTTTTCAAAAGCTTTGAAACGAATTTGTTATTAGTATTTATTTCACTG---------------
---------TGTATTCAGGTGTTGTGCTTCTGGGGCAAAATCAAGAGGGCATGGAAGCCGTGGCTTGCCCGCAGTACTGC
CTGGAAGTCGACTACATAACCTGCCCGTCCTCCGGGTCACAGAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAA
AGGCTGCACGCTTCATCTCTCTGACGGGATCAACCAAACTTGCTCTTAA-------------------------------
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>chr1D_1_TraesCS1D01G440400
AAACAGAGAATTAAGAAACTAGACTTGCCATGCACCATTAAACAAAATTGCCATGATACATGCACTTAAAATTGCCATGG
TTCACAAAAAAATATTTTTATGGTCAAAGTATTGGAATTGCCATCATCAAAAAACTAAAATTGTCATGCTCTACAAACTA
AAATTGCCACATGACAACTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATCATGGCAACTTTTGGGAAAAAAAAA
ATTTCGTCGAAACATATCAACATGGGGTCTAGTTTTGAAGATCTCGTCGAGACGGATTTAATGGTGAAAACGGATTTTTA
ATTTGATTTTTTAATTAGGAGATAAAACATTTTTAAGCCGAAAAGCAAAAAAAATTCTGCTCATGTCATCTGTTCATACG
TGGCAAAATGAGTGGTGATGGAGGCGTGTGGGCGTGTGGGCGTTAGTTTTTTCATTCTAAAATTGTTACCCGATCTAGTG
CTCAGGG-TTTTCGAGTTCAAGCTATGGGTTCGGGTTCTGTTTTTTTGGGTGCAGGCTTAGGGTCTCGGGTTTTTAGGAT
TCGGGCTTTAGGTATCCGGTTTTATGCCCGTTGTGAGTACGAGCAGTACAAGGCCGGGATGACATAGGTCATCAACCTTT
GCTCCAGTGACTCCGACAGCGACGACGATGGCAACAGAGCGGGCTAGAGCAGTGCCGGCGACGAGGGCCATAGCGGTAGA
CGCG----------------------------------------------------------------------------
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-------------------------------TTGAGAATTAAATGCACTCATGGTAGATTTACGGTGAGAGTTCCACTAG
ATCCA------TAGTACAAAGTAGACATCACGA-----ATCTGGTCAAGGTTCAAGCCTGCTTTAGTTGACTCCAAGCTA
CGAAAAATGGT-GGTTTTCAGCGTAGCCACCCACTACTGTACAAGGCAGTACTCTTCAGGACATAGGCTACATATAAGGA
TGTCAGTGGAAGCAAACAC--------CTTACCCAGCGTTTCAGATCAGAGTTCAGAACCACCTCAAGAGCGTGTGCAGA
GTACAGACATGGCCACCTCCAGACTCCACATCGCTTGCGCTCTCCTCCTCGCTGGTAGGCAAAG------CAGATCCAAC
TCTTGTTTTAATGGCAGTTTTTCAAAAGCTTTGAAACGAATTTGTTATTAGTATTTATTTCACTG---------------
---------TGTATTCAGGTGTTGTGCTTCTGGGGCAAAATCAAGAGGGCATGGAAGCCGTGGCTTGCCCGCAGTACTGC
CTGGAAGTCGACTACATAACCTGCCCGTCCTCCGGGTCACAGAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAA
AGGCTGCACGCTTCATCTCTCTGACGGGATCAACCAAACTTGCTCTTAATCC-------AGTTCAGACAGTGTTGTAACT
TCATGTCTTCATGTATGGTCTGGAGCTAGACAATGTACGTAC---TTGTCATGGCAGTAATAATGTGACAAAGTTGTATG
TTTTGCGGATAAAGCATGTCATATACTATGATTTATGCATTATCGACGAGTACGCGCATATACAGATATTCCCTCCCGGC
AGCTTCAATGAGCCCTAAAAGTTGTTTTGGTACCTATGGAGCAGAGGAGGGTAATAATAACGT---------ACGGTAAG
GAGCAGAGAGCTTAGGAACGTAATGATAATGATTACCGTACAATTAAAGCGTCGATTATAAATCGGCACGACAGCTGCTG
TGCTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTCTCCAGTTCGATCCTGGGCAGCAGCATTTTCTTTCTCCT-
---ATTTTTTTGGCCCCAATCATCTGGCAT--TTTTCTGCATCTCAATGATAATATAGCTTAGGAGCAGT-------TTT
TTTTCTCTCCATCTACGACCTAACTGTACAGTATATAATTTGTGTCTTTTCATCTATTACAACCTACAGCAAAAATCATC
ATGTTCTTCATGAAGAAAATAAAGCCCCACGGC--------------------------------AACACCACACAGCCA
CTGCTATTCTCATGGCAACTACAGCAAAAACCATCATGTTCCTCAGGAGAGGATGACAAAGATCCGAAGATGTGTTTTCT
CAAAATACA--------------CGAGCCTTAGGCGTCCCCGGCCCCACTAGCTTCAGTGTGATCCGGTCCTCTGTCTGT
CTCTTCGGCGCCATCTTGACCGTGGAATCTCAGGCATTCTCCTTTCCGTCCATTACGCTGGTACCTTCTTGATCAGTACT
GAGGGTCTGGGGTTCAATCCTGGACGGCAGCATTATTGTCTTTTACCATGTTTCATTTTTTGCTTGGCATTACAATCAGA
TGGCCATTGTTCTGCATGTCAATGATACATAGGAGGGGCAGATGATCAGATA-TTGTTCTCTTTGTTAACAAACTGATTT
TAGTGTGA
>chr1B_458
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---------------------------------------------------------TAAAATTGTTACCCGATCTAGTG
CTCGGGCTTTTTCGAGTTCGGGCTATGGGTTTGGGTTCAGGTTTTCTGGGTGCAGGCTTAGGGTATCGGGTTTTCGGGAT
TCGGGCTTTAGGTATCCGGTTTTATGCCCATCGTGAGCACGAGCAGTACAAGGCCGGGGCGACGTACGTTATCAACCTTT
GCTCCAGTAACTCCGACAATGACGACTATGGCAACGGAGCGGGCTAGGGCGGTGCCCGCGGCGAGGTCCTTATCCGTGGT
GACGGAGAAGACACGCTGCTTTCTGAATCGGACTGGGAGACATTGGAGACGAGGGCGATGGCGAGTAGTTTTATTTAGTT
TGTACACAATCTTGTTTATTTGTTTTCTAAATTATGTAAAATATTTCGAGTCTAATTTGATGTAGTAGTTTGAATCAAAT
TTGCACCGAATTGTGTTGAATTTTTTTTAAAGAGTTAAGTATTGAAGATCGGTTCGAGACACCACTTTTTTAGAGGAGCA
TACTCCTCTAAAGGATACTCGATCTTTTCGTAAAAAAGAAAAGGATACTCGGTCGTACCCCCCTCTAAATTATTGGAGAT
CAGTTAGAGATGCTCAAAGTCCAGTCCAATTATACAGACAGTGAAAAACGAAGACAGAGGATGACCGTCCAAAAGTCCGT
CGCCGGTCAAATCAAGCTGCTGCAATTTCTATTGAGAGTTAAATGTAGTCATGGTAGATTTATGGTTAGAGTTCCACTAG
ATCCA---------TACAAAGTAGACATCTTGAAGGTCATCTGGTCAAGGTTCAAGCCTGCTTTAGTTGACTCCAAGCTA
CGAAAAATGGC-GG-TTTCAGCGTAGCCACCAGCTACTGTACAAGGCAGTACTCTTCAGGACATAGGCTATATATAAGGA
T--------------------------------------TCCTGATCAGAATTCAGAACCACCTCAGGAGTGTGTGCAGA
GTACAGACATGGCCACCTTCAGACTCCACATCTCCTGCGCTCTCCTCCTCGCTGGTAGGCAAAC-------ACATCCAAC
TCTTGTTTTAATGGCAGTTTTTCAAA-GCTTTGAAACGAATTTGCTTTTTGCAATAGTATTCTTAT-----ATGTGGTCT
GTGTATTCATGTATTCAGGTGTTGTGCTTCTGGGGACAAATCAAGGGGGCATGGAAGCCATGGCTTGCCCTCAGTACTGC
CTGGAGGTCGACTACATAACCTGCCCGTCCTCCGGCTCACAGAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAA
AGGCTGCACGCTCCATCTCCCCGATGGGATCAACCAAACTTGCTCTTAACCCAGTTCAGAGTTCAGACAGTGATGTAACT
C--------CACGTATGGTGTGGTGCAAGACCATATG----C---TTGTCAAGGCAGTAATAATGTGAACAAGCTCTAAG
TTTTGCGGATAAAGCATGTCATGTAACATTATATGATGTTTCCTTCC-------------------------------GC
AGATTTAAAGAGCCCCAAAAGTTGTTTTGGTACCTAAGGTTATCTTGATGAGATAAGCAAAAGATGGTACCAACGGTAAG
GACAA----------------------------TAAAGAACAATTTATGTGTCAATTATTAATGGACAGAAGAGCTGCTG
TGGTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTCTCCAGTTCGATCCTGGGCAGCAGCAAATCCTT-----T-
---TTTTTTTTGACCCTGGTCCTCTGGATTTATTTTTTGCATGTCAATGATAATATAGCAGGACAAAATGATAACAGTTT
TTTTATCTCCATTAACGAACTAACTTTACAGTAAATAATTTGTGTCTTTTCATCTGTTACAACCTACAGCAAAAACCATC
ACGTTCTTCATGAAGAAAATAAAGCCCCACGGC--------------------------------A--------------
------------------CTACGGCAAAAACCATCATGTTCCTCAGGGGAGCATGACAAAGATCCGAAGATGTGTTTTCG
CAAAATAAATAAATCAGAACATGCGAGCCTTAGGCTTCCCCGGTCCCAGTAGGTTCAATGTGT-----TCC----TCCGT
CTCTTCCGCGCCATTTTGACCGGGGAATCTCAGGCATTCTCCTCTCCGTCCATTGCGCCGGTACCTGCTTGATCAGTACT
GAGGGTCTGGGGTTCAATCCTGGGCAGCAGTATTATTTTCTTTTACCATGTTTTCCTTTTTACTTGGCACTACAATAAGA
TGGCCATTGTTCTGCATGTCAATGCTACATAGGAGGGGCAGATGATTAAACA-TTTTTCTCTTTGTTAACAGACTGATTT
TACTGTGA
>chr1A_724
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-------------------------------TTGAGAATTAAATGCAGCCATGGTAGATTTACGGTGAGAGTTCCACGAG
ATCCATATCCATAGTACAAAGTAGACATCACGA-----ATCTGGTCAAGGTTCAAGCCTGATTTAGTTGACTACAAGCTA
CGAAAATTGGGTGG-TTTCAGCGTAGCCACCGGCTAGTGTACAAGGCAGTACTCTTCAGGACAAAGGCTATATATTAGGA
TGTCAGTGGAAGCAATCAAGGAAATATCTTACCCTGCGATCCTTATCAGAATTCAGAACCAGCTCAGGAGTGT-------
GTACAGACATGGCTACCTCCAGACTCCACATCGCCTGCGCTCTCCTCCTCGCTGGTAGGCAAACCGCAAACACATCCAAC
TCTTGCTTTAATGGCAGGTTTTC-AAAGCTTTGAAACGAACTTGTTATG-GTATTTTTTTAATATGTGTGCATGTGGTCT
GTGTATTCATATATTCAGGTGTTGTGCTTCTGGGGCAAAATCAAGAGGGCATGGAAGCCGTGGCTTGCCCTCAGTACTGC
CTGGAGGTCGACTACATAACCTGCCCGTCCTCCGGCTCACAGAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAA
AGGCTGCACGCTTCATCTCTCCGACGGGATCAACCAAACTTGCTCTTAACCCAGTTCAGAGTTCAGACAGTGATGTAACT
TCATGTCTTCATGTATGGTGTGGCGGTAGACAGTGTACTTGTCATTTGTCAAGGCAGTAATAATCTGACAAAGCTGCAAG
TTTTGCGGATAAAGCATGTCATATACTATGATACACG--TTATCGATGAGTACGCACATATAA---------------GC
AGCTTCAAAGAGCCCTAAAAGTTGTTTTGGTACCTATGGTTATCTTGCTGAGATAACC---AGAGGGTACCAACGGTAAG
GAGCAGAGAGGTTAGGAACGTAATAATAACGATTA-CCTACAATTAGGATGTTAATTATAAATAGACATAACAGCTGCTG
TGGTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTCTCCAGTTCGATCCTGGGCAGCAGCATTTTTATTTCTTTT
TCCTCTTTTTTGGCCCCAGTCATCTGGCAT--TTT-----------ATGATAATATAGCAGGACAAAATGTTAACAGTTC
TTTTCTCTCCCTACAGCA----------------------------------------------------AAAAACCATC
ATGTTCTTCATGAAGAAAATAAAGCCCCATGGCAACACCACACAGCCACCGTTATTCTCATGGCAA--------------
------------------CTACAGCAAAAACCATCATGTTCCTCAGGAGAGCATGACAAAGATCCGAAGATGTGTTCTCG
CAAAATAACTAAATCAGAATACACAAGCCTTAGGCGTCCCCGGCCCCACTAGCTTCAGTGTGATCCGATCC----TCTGT
CTCTTCGGCGCCATCTTGACCGTGGAATCTCAGGCATTCTCCTTTCCGTCCATTGCGCTGGTACCTGCTTGATCAGTACT
GAGGGTCTGGGGTTCAATCCTGGGCGGCAGCATTATTTTCTTTTACCATGTTTCATTTTTTGCTTGGCATTACAATCAGA
TGGCCATTGTTCTGCATGTCAATGATACATAGGAGGGGCAGATGATCAGATATTTTTTCTCTTTGTTAACATACTGATTT
TAGTGTGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
---S--S------------SS----------S------S-S----S------------------S---------SS----
-----------------------------S-S-----S--------------------SS---S--S--S----------
--------S---------SS------S--------S-----------S--S-----S---S-----S--S--S-S--S-S
SS------------------------------------------------------------------------------
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-----------------------------------------------S--------------------------------
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----------S---S----------------SS-------------------------------------S---------
---------------S--S---------------S---S-S-S-------S---------------S---S---------
----------------------------------S----------------------------S--------S-------
-------------------------------------------------S------S---S-S-S---------------
----------------------------------------------------------------------S---------
-----S-----------------------------S--------------------------------------------
---------------------S---------------------------S----------------------S-------
-------------------S---S--------------S-S----------S---------------------S----S-
--------------------------------S--S-SS----------------S------SSSSSSSSSSSSSSSS--
--------S------------------------------SSSSSSS--S-SS-SS-SS--SSS-----------------
----------S-------------S----S-----S-----------S-S---S---------S-S--SS----------
--S-----------------------------------------------------------------------SSSS--
---S--------------S-----------------S-----S----------------SSSSS-SS-SS----------
------------SS----S------S-------S---------------------S-------------------S----
------------------------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------------------------------S---------------------------S
-------S-----------------------------------------------------------S---SSSS-----
------------------------------------------------------S-----------S-------------
-----------------------S-------------S------------------------------------------
-------------------------------------------------------S---------------S--------
--------
>forward_451
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-------------------------------GCGTGTGGGCGTTAGTTTTT-----------------------------
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>reverse_1998
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-----------------------------------------------------------------------------GGC
AGCTTCAATGAGCCCTA---------------------------------------------------------------
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