Multiple sequence alignment - TraesCS1D01G437200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G437200 chr1D 100.000 3511 0 0 1 3511 484555292 484551782 0.000000e+00 6484.0
1 TraesCS1D01G437200 chr1D 83.651 367 32 11 3151 3511 408519899 408520243 1.570000e-83 320.0
2 TraesCS1D01G437200 chr1D 94.366 71 3 1 3107 3177 408519813 408519882 1.330000e-19 108.0
3 TraesCS1D01G437200 chr1B 90.751 3568 202 51 7 3511 674810730 674807228 0.000000e+00 4643.0
4 TraesCS1D01G437200 chr1B 100.000 30 0 0 3469 3498 674792797 674792768 4.900000e-04 56.5
5 TraesCS1D01G437200 chr1A 94.315 2867 127 21 1 2847 581870612 581867762 0.000000e+00 4359.0
6 TraesCS1D01G437200 chr1A 85.019 267 21 9 3242 3496 581866677 581866418 1.620000e-63 254.0
7 TraesCS1D01G437200 chr1A 80.980 347 26 15 2860 3199 581867424 581867111 4.530000e-59 239.0
8 TraesCS1D01G437200 chr1A 94.366 71 3 1 3107 3177 564329355 564329286 1.330000e-19 108.0
9 TraesCS1D01G437200 chr4D 84.196 367 30 11 3151 3511 486438300 486437956 7.260000e-87 331.0
10 TraesCS1D01G437200 chr4D 94.366 71 3 1 3107 3177 486438386 486438317 1.330000e-19 108.0
11 TraesCS1D01G437200 chr3D 84.196 367 30 11 3151 3511 54772704 54772360 7.260000e-87 331.0
12 TraesCS1D01G437200 chr3D 94.366 71 3 1 3107 3177 54772790 54772721 1.330000e-19 108.0
13 TraesCS1D01G437200 chr2D 83.651 367 32 11 3151 3511 144463013 144462669 1.570000e-83 320.0
14 TraesCS1D01G437200 chr2D 83.651 367 32 11 3151 3511 288989534 288989878 1.570000e-83 320.0
15 TraesCS1D01G437200 chr2D 94.366 71 3 1 3107 3177 144463099 144463030 1.330000e-19 108.0
16 TraesCS1D01G437200 chr2D 94.366 71 3 1 3107 3177 288989448 288989517 1.330000e-19 108.0
17 TraesCS1D01G437200 chr5D 82.943 299 30 11 3151 3443 214062960 214063243 2.090000e-62 250.0
18 TraesCS1D01G437200 chr6B 94.366 71 3 1 3107 3177 14723498 14723429 1.330000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G437200 chr1D 484551782 484555292 3510 True 6484.000000 6484 100.000000 1 3511 1 chr1D.!!$R1 3510
1 TraesCS1D01G437200 chr1B 674807228 674810730 3502 True 4643.000000 4643 90.751000 7 3511 1 chr1B.!!$R2 3504
2 TraesCS1D01G437200 chr1A 581866418 581870612 4194 True 1617.333333 4359 86.771333 1 3496 3 chr1A.!!$R2 3495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 845 0.377554 GAAGTAGCAGCAGCAGCATG 59.622 55.0 12.92 0.0 45.49 4.06 F
1663 1714 0.400213 CCCTTGACTGGGCTAACACA 59.600 55.0 0.00 0.0 40.84 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1783 0.109964 CCCGCACATAACAACCAACG 60.110 55.0 0.0 0.0 0.0 4.10 R
3233 3799 0.534877 TGCTGCCACATGTCGTCTTT 60.535 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.388133 GAAATCCCAACCAGCCCCT 59.612 57.895 0.00 0.00 0.00 4.79
73 74 0.684479 GAAATCCCAACCAGCCCCTC 60.684 60.000 0.00 0.00 0.00 4.30
369 383 2.477176 CGAGAGGAGCAGGAGTCGG 61.477 68.421 0.00 0.00 0.00 4.79
410 424 1.148273 GCGGGGATGGCTGTGATTA 59.852 57.895 0.00 0.00 0.00 1.75
574 592 3.118261 TGGTCAGAAATCTAGGATGCACC 60.118 47.826 0.00 0.00 39.35 5.01
745 764 4.603231 CAACAAAAATTGCTGTTGCTGT 57.397 36.364 15.93 0.00 44.14 4.40
746 765 4.972201 CAACAAAAATTGCTGTTGCTGTT 58.028 34.783 15.93 0.00 44.14 3.16
747 766 4.603231 ACAAAAATTGCTGTTGCTGTTG 57.397 36.364 0.00 0.00 40.48 3.33
748 767 3.181508 ACAAAAATTGCTGTTGCTGTTGC 60.182 39.130 0.00 0.00 40.48 4.17
797 830 1.325355 ATTGCTGTTGCTGCTGAAGT 58.675 45.000 0.00 0.00 40.48 3.01
798 831 1.965935 TTGCTGTTGCTGCTGAAGTA 58.034 45.000 0.00 0.00 40.48 2.24
799 832 1.516161 TGCTGTTGCTGCTGAAGTAG 58.484 50.000 0.00 0.00 40.48 2.57
812 845 0.377554 GAAGTAGCAGCAGCAGCATG 59.622 55.000 12.92 0.00 45.49 4.06
818 851 0.456221 GCAGCAGCAGCATGATCTTT 59.544 50.000 4.63 0.00 45.49 2.52
823 856 3.119459 AGCAGCAGCATGATCTTTTCTTG 60.119 43.478 3.17 0.00 45.49 3.02
887 931 1.876664 GGCCTTCGCACTTCCTTTC 59.123 57.895 0.00 0.00 36.38 2.62
1461 1505 5.064707 AGCTGGCATTGTAAATACAGTAACG 59.935 40.000 0.00 0.00 37.52 3.18
1488 1532 7.585210 CAGTTGATGTCATTAACTATCATTGCG 59.415 37.037 19.39 4.76 37.03 4.85
1663 1714 0.400213 CCCTTGACTGGGCTAACACA 59.600 55.000 0.00 0.00 40.84 3.72
1667 1718 1.656587 TGACTGGGCTAACACAGGAT 58.343 50.000 0.00 0.00 39.00 3.24
1731 1783 6.714492 CAAAAAGGCAGAAACAATGTTAACC 58.286 36.000 0.00 0.00 0.00 2.85
1783 1835 2.229784 GTGGAGTGGAAATCAAGCAAGG 59.770 50.000 0.00 0.00 28.43 3.61
1949 2001 2.038295 CTCAAACAGTTCTGGCTCTCCT 59.962 50.000 4.82 0.00 0.00 3.69
2069 2121 2.801679 GCAAGCACAGATAGCTGATCTC 59.198 50.000 16.32 0.46 43.52 2.75
2093 2145 2.136298 ACTCTCTCAGCATCGAGGAA 57.864 50.000 0.00 0.00 33.59 3.36
2100 2152 1.448540 AGCATCGAGGAAACGCAGG 60.449 57.895 0.00 0.00 0.00 4.85
2189 2241 2.057316 CAGCTAAGGAAGATCATCGCG 58.943 52.381 0.00 0.00 0.00 5.87
2192 2244 2.667137 CTAAGGAAGATCATCGCGGAC 58.333 52.381 6.13 0.00 0.00 4.79
2234 2286 4.093952 CGCGACAAGCCCTTGCAG 62.094 66.667 0.00 3.92 44.03 4.41
2321 2373 0.539051 ACCCTGAGCTGCACTGTATC 59.461 55.000 1.02 0.00 0.00 2.24
2325 2377 0.108662 TGAGCTGCACTGTATCGGTG 60.109 55.000 1.02 4.56 43.00 4.94
2339 2391 4.466370 TGTATCGGTGTTGAGAAGAGGAAT 59.534 41.667 0.00 0.00 0.00 3.01
2342 2394 2.289694 CGGTGTTGAGAAGAGGAATGGT 60.290 50.000 0.00 0.00 0.00 3.55
2520 2572 5.221541 CCCAACATCTTGTAGGATCTACTCC 60.222 48.000 6.63 0.00 45.33 3.85
2703 2756 5.334957 GCTCAGTGTTAAAAGAAGGGCTTAC 60.335 44.000 0.00 0.00 35.24 2.34
2848 2911 1.000274 GCGGCTTCAAATTTGTGGACT 60.000 47.619 17.47 0.00 0.00 3.85
2878 3266 8.911918 TTTAGTAATGGCTTTGTTTCTCTGTA 57.088 30.769 0.00 0.00 0.00 2.74
2948 3336 1.758936 TTGATGGATTGAGCAGCCTG 58.241 50.000 0.00 0.00 0.00 4.85
2961 3349 0.171007 CAGCCTGTAACAAATGGGCG 59.829 55.000 0.00 0.00 46.44 6.13
2977 3365 1.475034 GGGCGTCATGTGTATGGACAT 60.475 52.381 0.00 0.00 38.04 3.06
2982 3370 3.553105 CGTCATGTGTATGGACATCACAG 59.447 47.826 16.59 11.61 43.61 3.66
2989 3377 2.996249 ATGGACATCACAGCCTGTAG 57.004 50.000 0.00 0.00 0.00 2.74
3002 3390 1.719600 CCTGTAGCACTCAACTGCTC 58.280 55.000 0.00 0.00 44.58 4.26
3006 3394 2.890945 TGTAGCACTCAACTGCTCTGTA 59.109 45.455 0.00 0.00 44.58 2.74
3007 3395 2.447244 AGCACTCAACTGCTCTGTAC 57.553 50.000 0.00 0.00 44.58 2.90
3008 3396 1.001406 AGCACTCAACTGCTCTGTACC 59.999 52.381 0.00 0.00 44.58 3.34
3013 3401 1.278985 TCAACTGCTCTGTACCATGGG 59.721 52.381 18.09 0.00 0.00 4.00
3014 3402 1.278985 CAACTGCTCTGTACCATGGGA 59.721 52.381 18.09 3.85 0.00 4.37
3035 3423 5.303971 GGACTCATCCATTCAGATACCAAG 58.696 45.833 0.00 0.00 45.47 3.61
3036 3424 5.163258 GGACTCATCCATTCAGATACCAAGT 60.163 44.000 0.00 0.00 45.47 3.16
3065 3453 4.739436 GCCCAAACCTTTCCTTGTTACAAG 60.739 45.833 17.37 17.37 0.00 3.16
3076 3464 3.378427 CCTTGTTACAAGCTGATTAGGCC 59.622 47.826 18.72 0.00 0.00 5.19
3083 3473 2.945668 CAAGCTGATTAGGCCTGTAACC 59.054 50.000 17.99 0.00 0.00 2.85
3091 3481 1.270907 AGGCCTGTAACCAGAGAGTG 58.729 55.000 3.11 0.00 41.50 3.51
3097 3487 1.555075 TGTAACCAGAGAGTGCCCATC 59.445 52.381 0.00 0.00 0.00 3.51
3195 3590 8.547967 TTCATTCCTGTGACAATCTTAACTAC 57.452 34.615 0.00 0.00 0.00 2.73
3196 3591 7.907389 TCATTCCTGTGACAATCTTAACTACT 58.093 34.615 0.00 0.00 0.00 2.57
3197 3592 9.031537 TCATTCCTGTGACAATCTTAACTACTA 57.968 33.333 0.00 0.00 0.00 1.82
3201 3596 8.812972 TCCTGTGACAATCTTAACTACTATGTT 58.187 33.333 0.00 0.00 0.00 2.71
3202 3597 9.436957 CCTGTGACAATCTTAACTACTATGTTT 57.563 33.333 0.00 0.00 0.00 2.83
3274 4074 1.675483 CACTTGCTGTTGTGTGGCTTA 59.325 47.619 0.00 0.00 0.00 3.09
3275 4075 1.676006 ACTTGCTGTTGTGTGGCTTAC 59.324 47.619 0.00 0.00 0.00 2.34
3288 4088 1.667830 GCTTACGCAGTGGAGCACA 60.668 57.895 6.71 0.00 45.75 4.57
3289 4089 1.021390 GCTTACGCAGTGGAGCACAT 61.021 55.000 6.71 0.00 45.75 3.21
3290 4090 0.723414 CTTACGCAGTGGAGCACATG 59.277 55.000 0.00 0.00 45.73 3.21
3291 4091 0.320050 TTACGCAGTGGAGCACATGA 59.680 50.000 0.00 0.00 45.73 3.07
3292 4092 0.389817 TACGCAGTGGAGCACATGAC 60.390 55.000 0.00 0.00 45.73 3.06
3307 4107 5.419788 AGCACATGACATGACCAAAATATGT 59.580 36.000 22.19 0.00 37.72 2.29
3320 4120 7.119699 TGACCAAAATATGTCACTTGATCACTC 59.880 37.037 0.00 0.00 36.62 3.51
3336 4136 0.987294 ACTCAATCCTCCTGTGGTGG 59.013 55.000 0.00 0.00 37.67 4.61
3380 4186 2.886523 TGGTGCCAGTTTTCATGAGAAG 59.113 45.455 0.00 0.00 34.71 2.85
3389 4195 4.038402 AGTTTTCATGAGAAGCAACCAAGG 59.962 41.667 0.00 0.00 34.71 3.61
3408 4214 1.228184 GGGATGGGCATGCAGAGAG 60.228 63.158 21.36 0.00 0.00 3.20
3411 4217 0.182061 GATGGGCATGCAGAGAGGAA 59.818 55.000 21.36 0.00 0.00 3.36
3428 4241 1.030457 GAAGATGATGGCCAAGCAGG 58.970 55.000 10.96 0.00 41.84 4.85
3443 4256 1.915266 CAGGGCTGGACCTCACTCA 60.915 63.158 0.00 0.00 39.34 3.41
3448 4261 0.902516 GCTGGACCTCACTCACTCCT 60.903 60.000 0.00 0.00 0.00 3.69
3452 4265 1.470051 GACCTCACTCACTCCTCTCC 58.530 60.000 0.00 0.00 0.00 3.71
3501 4316 2.029560 GGAAGAAAGAAGGCCAAGCAAG 60.030 50.000 5.01 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.303615 GGAGGGAGAGACGACTGGA 59.696 63.158 0.00 0.00 0.00 3.86
73 74 2.115911 CGGAGGGAGAGACGACTGG 61.116 68.421 0.00 0.00 0.00 4.00
369 383 1.227176 CCTAGAACCCTAACGGCGC 60.227 63.158 6.90 0.00 33.26 6.53
410 424 1.347062 GGCCAGCTAGCTCTAAGGAT 58.653 55.000 16.15 0.00 0.00 3.24
471 489 5.023533 TCTCACTGCCACAGTAATAATCC 57.976 43.478 0.00 0.00 43.43 3.01
472 490 5.698545 GGATCTCACTGCCACAGTAATAATC 59.301 44.000 0.00 2.43 43.43 1.75
473 491 5.455326 GGGATCTCACTGCCACAGTAATAAT 60.455 44.000 0.00 0.00 43.43 1.28
474 492 4.141711 GGGATCTCACTGCCACAGTAATAA 60.142 45.833 0.00 0.00 43.43 1.40
479 497 1.892819 CGGGATCTCACTGCCACAGT 61.893 60.000 0.00 0.00 46.51 3.55
739 758 1.410882 GGGGTAAAACAGCAACAGCAA 59.589 47.619 0.00 0.00 0.00 3.91
743 762 2.028130 CACAGGGGTAAAACAGCAACA 58.972 47.619 0.00 0.00 0.00 3.33
745 764 2.738587 TCACAGGGGTAAAACAGCAA 57.261 45.000 0.00 0.00 0.00 3.91
746 765 2.554344 GGATCACAGGGGTAAAACAGCA 60.554 50.000 0.00 0.00 0.00 4.41
747 766 2.092323 GGATCACAGGGGTAAAACAGC 58.908 52.381 0.00 0.00 0.00 4.40
748 767 3.433306 TGGATCACAGGGGTAAAACAG 57.567 47.619 0.00 0.00 0.00 3.16
797 830 0.468648 AGATCATGCTGCTGCTGCTA 59.531 50.000 27.67 16.66 40.48 3.49
798 831 0.394488 AAGATCATGCTGCTGCTGCT 60.394 50.000 27.67 11.28 40.48 4.24
799 832 0.456221 AAAGATCATGCTGCTGCTGC 59.544 50.000 22.51 22.51 40.48 5.25
812 845 4.142513 GGATCACAGTGGCAAGAAAAGATC 60.143 45.833 0.00 0.00 0.00 2.75
818 851 2.885135 ATGGATCACAGTGGCAAGAA 57.115 45.000 0.00 0.00 0.00 2.52
823 856 6.005583 CATACAAATATGGATCACAGTGGC 57.994 41.667 0.00 0.00 35.45 5.01
887 931 1.529226 TTCGCCCACACAAATACAGG 58.471 50.000 0.00 0.00 0.00 4.00
949 993 2.686558 ACGCATCACAACATGTCAAC 57.313 45.000 0.00 0.00 0.00 3.18
1356 1400 7.414540 GCAACAGAGCATAAATTAAGCTGTAGT 60.415 37.037 7.51 2.85 39.02 2.73
1461 1505 7.377928 GCAATGATAGTTAATGACATCAACTGC 59.622 37.037 13.41 5.08 35.22 4.40
1663 1714 7.651027 AATAAAAATAGCAAGACAGCATCCT 57.349 32.000 0.00 0.00 36.85 3.24
1667 1718 9.787532 GTCATAAATAAAAATAGCAAGACAGCA 57.212 29.630 0.00 0.00 36.85 4.41
1731 1783 0.109964 CCCGCACATAACAACCAACG 60.110 55.000 0.00 0.00 0.00 4.10
1783 1835 5.383130 GTTTCGATAAAGAACTTGCAGGTC 58.617 41.667 0.32 0.00 30.24 3.85
1883 1935 0.467384 CAAGCCGGTCAGGAGATGAT 59.533 55.000 1.90 0.00 45.00 2.45
1889 1941 0.537188 GATCTTCAAGCCGGTCAGGA 59.463 55.000 1.90 0.00 45.00 3.86
1949 2001 5.702670 GTCAGATCCTGATTCTGAAACACAA 59.297 40.000 5.05 0.00 42.73 3.33
2069 2121 3.437428 CTCGATGCTGAGAGAGTTCTTG 58.563 50.000 0.00 0.00 38.28 3.02
2100 2152 2.125952 GGACTGCAAATTGGCGGC 60.126 61.111 13.89 0.00 44.09 6.53
2234 2286 1.809567 CTGGTTGCCAGTTTCCAGCC 61.810 60.000 6.99 0.00 45.82 4.85
2297 2349 1.196766 AGTGCAGCTCAGGGTCATCA 61.197 55.000 0.00 0.00 0.00 3.07
2321 2373 2.289694 ACCATTCCTCTTCTCAACACCG 60.290 50.000 0.00 0.00 0.00 4.94
2325 2377 3.604582 CCTCACCATTCCTCTTCTCAAC 58.395 50.000 0.00 0.00 0.00 3.18
2339 2391 1.915266 CACCCTCTCTGCCTCACCA 60.915 63.158 0.00 0.00 0.00 4.17
2342 2394 1.305633 CTCCACCCTCTCTGCCTCA 60.306 63.158 0.00 0.00 0.00 3.86
2520 2572 1.790387 GCCTTGTAGCGAGCTTGTG 59.210 57.895 1.86 0.00 0.00 3.33
2858 3246 7.759489 AACATACAGAGAAACAAAGCCATTA 57.241 32.000 0.00 0.00 0.00 1.90
2878 3266 4.624015 CAAACACAAGGCATCAGAAACAT 58.376 39.130 0.00 0.00 0.00 2.71
2917 3305 6.700520 GCTCAATCCATCAATTTTCTGGAATC 59.299 38.462 4.88 0.00 42.12 2.52
2919 3307 5.481122 TGCTCAATCCATCAATTTTCTGGAA 59.519 36.000 4.88 0.00 42.12 3.53
2948 3336 2.227865 ACACATGACGCCCATTTGTTAC 59.772 45.455 0.00 0.00 41.88 2.50
2961 3349 3.310774 GCTGTGATGTCCATACACATGAC 59.689 47.826 0.00 0.00 42.30 3.06
2977 3365 1.047801 TTGAGTGCTACAGGCTGTGA 58.952 50.000 29.65 10.87 42.39 3.58
2982 3370 2.166270 GCAGTTGAGTGCTACAGGC 58.834 57.895 3.61 0.00 40.54 4.85
2989 3377 1.270305 TGGTACAGAGCAGTTGAGTGC 60.270 52.381 2.60 2.60 44.35 4.40
2999 3387 5.373203 GGATGAGTCCCATGGTACAGAGC 62.373 56.522 10.44 0.00 39.64 4.09
3002 3390 2.118679 TGGATGAGTCCCATGGTACAG 58.881 52.381 10.44 0.00 43.51 2.74
3006 3394 2.174210 CTGAATGGATGAGTCCCATGGT 59.826 50.000 11.73 0.00 43.20 3.55
3007 3395 2.440627 TCTGAATGGATGAGTCCCATGG 59.559 50.000 4.14 4.14 43.20 3.66
3008 3396 3.851458 TCTGAATGGATGAGTCCCATG 57.149 47.619 2.05 0.00 43.20 3.66
3013 3401 5.923204 ACTTGGTATCTGAATGGATGAGTC 58.077 41.667 0.00 0.00 0.00 3.36
3014 3402 5.965033 ACTTGGTATCTGAATGGATGAGT 57.035 39.130 0.00 0.00 0.00 3.41
3030 3418 1.699730 GTTTGGGCCTTGTACTTGGT 58.300 50.000 4.53 0.00 0.00 3.67
3055 3443 4.095483 CAGGCCTAATCAGCTTGTAACAAG 59.905 45.833 3.98 0.00 33.03 3.16
3065 3453 2.170607 TCTGGTTACAGGCCTAATCAGC 59.829 50.000 19.86 9.08 44.99 4.26
3076 3464 0.976641 TGGGCACTCTCTGGTTACAG 59.023 55.000 0.00 0.00 46.30 2.74
3083 3473 1.676746 CCATTGATGGGCACTCTCTG 58.323 55.000 1.92 0.00 44.31 3.35
3097 3487 2.026641 CCAAGCAGGTACCATCCATTG 58.973 52.381 15.94 10.89 0.00 2.82
3201 3596 4.367450 GCAGGACAACAGCATTACAAAAA 58.633 39.130 0.00 0.00 0.00 1.94
3202 3597 3.243704 GGCAGGACAACAGCATTACAAAA 60.244 43.478 0.00 0.00 0.00 2.44
3203 3598 2.295909 GGCAGGACAACAGCATTACAAA 59.704 45.455 0.00 0.00 0.00 2.83
3204 3599 1.885887 GGCAGGACAACAGCATTACAA 59.114 47.619 0.00 0.00 0.00 2.41
3205 3600 1.202867 TGGCAGGACAACAGCATTACA 60.203 47.619 0.00 0.00 0.00 2.41
3206 3601 1.533625 TGGCAGGACAACAGCATTAC 58.466 50.000 0.00 0.00 0.00 1.89
3207 3602 2.284754 TTGGCAGGACAACAGCATTA 57.715 45.000 0.00 0.00 0.00 1.90
3208 3603 1.412079 TTTGGCAGGACAACAGCATT 58.588 45.000 0.00 0.00 0.00 3.56
3232 3798 0.593128 GCTGCCACATGTCGTCTTTT 59.407 50.000 0.00 0.00 0.00 2.27
3233 3799 0.534877 TGCTGCCACATGTCGTCTTT 60.535 50.000 0.00 0.00 0.00 2.52
3234 3800 0.952497 CTGCTGCCACATGTCGTCTT 60.952 55.000 0.00 0.00 0.00 3.01
3235 3801 1.375140 CTGCTGCCACATGTCGTCT 60.375 57.895 0.00 0.00 0.00 4.18
3239 3805 1.521450 AAGTGCTGCTGCCACATGTC 61.521 55.000 13.47 0.00 38.71 3.06
3274 4074 1.669115 GTCATGTGCTCCACTGCGT 60.669 57.895 0.00 0.00 35.11 5.24
3275 4075 1.022982 ATGTCATGTGCTCCACTGCG 61.023 55.000 0.00 0.00 35.11 5.18
3279 4079 1.089920 GGTCATGTCATGTGCTCCAC 58.910 55.000 12.54 2.50 34.56 4.02
3290 4090 7.144722 TCAAGTGACATATTTTGGTCATGTC 57.855 36.000 6.93 6.93 44.94 3.06
3291 4091 7.394077 TGATCAAGTGACATATTTTGGTCATGT 59.606 33.333 0.00 0.00 44.94 3.21
3292 4092 7.699391 GTGATCAAGTGACATATTTTGGTCATG 59.301 37.037 0.00 0.00 44.94 3.07
3307 4107 4.081254 CAGGAGGATTGAGTGATCAAGTGA 60.081 45.833 0.00 0.00 32.69 3.41
3320 4120 1.379044 GCCCACCACAGGAGGATTG 60.379 63.158 0.76 0.00 35.40 2.67
3380 4186 2.364186 CCCATCCCCCTTGGTTGC 60.364 66.667 0.00 0.00 33.18 4.17
3389 4195 2.203451 CTCTGCATGCCCATCCCC 60.203 66.667 16.68 0.00 0.00 4.81
3408 4214 1.030457 CTGCTTGGCCATCATCTTCC 58.970 55.000 6.09 0.00 0.00 3.46
3411 4217 1.229359 CCCTGCTTGGCCATCATCT 59.771 57.895 6.09 0.00 0.00 2.90
3428 4241 1.594310 GAGTGAGTGAGGTCCAGCC 59.406 63.158 0.00 0.00 37.58 4.85
3443 4256 0.684153 GCAGAGCAGAGGAGAGGAGT 60.684 60.000 0.00 0.00 0.00 3.85
3448 4261 0.683828 CTGGAGCAGAGCAGAGGAGA 60.684 60.000 0.00 0.00 32.44 3.71
3452 4265 1.256361 TGGACTGGAGCAGAGCAGAG 61.256 60.000 0.00 0.00 35.18 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.