Multiple sequence alignment - TraesCS1D01G426300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G426300 chr1D 100.000 2753 0 0 1 2753 479539271 479542023 0.000000e+00 5084.0
1 TraesCS1D01G426300 chr1D 85.714 140 11 4 2593 2726 479558784 479558920 3.700000e-29 139.0
2 TraesCS1D01G426300 chr1D 84.921 126 13 6 2344 2468 479558538 479558658 3.720000e-24 122.0
3 TraesCS1D01G426300 chr1A 86.250 2400 155 77 444 2747 575807213 575809533 0.000000e+00 2442.0
4 TraesCS1D01G426300 chr1A 96.825 63 2 0 123 185 575806568 575806630 3.750000e-19 106.0
5 TraesCS1D01G426300 chr1B 87.049 1413 101 40 763 2128 667749477 667750854 0.000000e+00 1520.0
6 TraesCS1D01G426300 chr1B 92.973 185 7 3 2554 2737 667751408 667751587 5.850000e-67 265.0
7 TraesCS1D01G426300 chr1B 88.571 210 13 3 1 206 667739885 667740087 7.620000e-61 244.0
8 TraesCS1D01G426300 chr1B 81.624 234 26 11 2339 2556 667751036 667751268 7.830000e-41 178.0
9 TraesCS1D01G426300 chr5A 84.910 391 48 8 2041 2424 492622171 492622557 4.300000e-103 385.0
10 TraesCS1D01G426300 chr5A 79.885 174 31 4 1528 1699 459775648 459775477 1.040000e-24 124.0
11 TraesCS1D01G426300 chrUn 83.979 387 51 5 2041 2424 98447556 98447934 7.250000e-96 361.0
12 TraesCS1D01G426300 chr3B 82.558 172 28 2 1528 1698 416135495 416135325 1.710000e-32 150.0
13 TraesCS1D01G426300 chr3A 81.250 192 30 5 1511 1698 423672101 423672290 1.710000e-32 150.0
14 TraesCS1D01G426300 chr3D 81.609 174 32 0 1525 1698 305622627 305622800 7.950000e-31 145.0
15 TraesCS1D01G426300 chr4D 77.907 172 38 0 1528 1699 61852304 61852475 1.040000e-19 108.0
16 TraesCS1D01G426300 chr4A 77.326 172 39 0 1528 1699 535035694 535035865 4.850000e-18 102.0
17 TraesCS1D01G426300 chr4B 76.000 175 42 0 1528 1702 90892347 90892173 1.050000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G426300 chr1D 479539271 479542023 2752 False 5084.000000 5084 100.000000 1 2753 1 chr1D.!!$F1 2752
1 TraesCS1D01G426300 chr1A 575806568 575809533 2965 False 1274.000000 2442 91.537500 123 2747 2 chr1A.!!$F1 2624
2 TraesCS1D01G426300 chr1B 667749477 667751587 2110 False 654.333333 1520 87.215333 763 2737 3 chr1B.!!$F2 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 1429 0.395686 GCTAGCTGCATCCATCCAGA 59.604 55.0 7.7 0.0 42.31 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2378 0.601057 GATTAGAGAGAGCCCCTCGC 59.399 60.0 0.24 0.24 46.49 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.843490 TCTTTGAGAAAGAAGTTTTCGAAGA 57.157 32.000 0.00 5.59 44.10 2.87
29 30 8.438676 TCTTTGAGAAAGAAGTTTTCGAAGAT 57.561 30.769 0.00 0.00 44.10 2.40
30 31 8.893727 TCTTTGAGAAAGAAGTTTTCGAAGATT 58.106 29.630 0.00 0.00 44.10 2.40
36 37 9.937175 AGAAAGAAGTTTTCGAAGATTAAAGTG 57.063 29.630 0.00 0.00 35.04 3.16
37 38 9.717892 GAAAGAAGTTTTCGAAGATTAAAGTGT 57.282 29.630 0.00 0.00 35.04 3.55
38 39 9.503427 AAAGAAGTTTTCGAAGATTAAAGTGTG 57.497 29.630 0.00 0.00 35.04 3.82
39 40 8.209917 AGAAGTTTTCGAAGATTAAAGTGTGT 57.790 30.769 0.00 0.00 35.04 3.72
40 41 9.321562 AGAAGTTTTCGAAGATTAAAGTGTGTA 57.678 29.630 0.00 0.00 35.04 2.90
41 42 9.582223 GAAGTTTTCGAAGATTAAAGTGTGTAG 57.418 33.333 0.00 0.00 35.04 2.74
42 43 8.658499 AGTTTTCGAAGATTAAAGTGTGTAGT 57.342 30.769 0.00 0.00 35.04 2.73
43 44 9.754382 AGTTTTCGAAGATTAAAGTGTGTAGTA 57.246 29.630 0.00 0.00 35.04 1.82
45 46 8.752766 TTTCGAAGATTAAAGTGTGTAGTAGG 57.247 34.615 0.00 0.00 35.04 3.18
46 47 7.692460 TCGAAGATTAAAGTGTGTAGTAGGA 57.308 36.000 0.00 0.00 0.00 2.94
47 48 8.289939 TCGAAGATTAAAGTGTGTAGTAGGAT 57.710 34.615 0.00 0.00 0.00 3.24
48 49 8.188799 TCGAAGATTAAAGTGTGTAGTAGGATG 58.811 37.037 0.00 0.00 0.00 3.51
49 50 7.435488 CGAAGATTAAAGTGTGTAGTAGGATGG 59.565 40.741 0.00 0.00 0.00 3.51
50 51 7.973048 AGATTAAAGTGTGTAGTAGGATGGA 57.027 36.000 0.00 0.00 0.00 3.41
51 52 8.554490 AGATTAAAGTGTGTAGTAGGATGGAT 57.446 34.615 0.00 0.00 0.00 3.41
52 53 8.424918 AGATTAAAGTGTGTAGTAGGATGGATG 58.575 37.037 0.00 0.00 0.00 3.51
53 54 5.359194 AAAGTGTGTAGTAGGATGGATGG 57.641 43.478 0.00 0.00 0.00 3.51
54 55 4.265856 AGTGTGTAGTAGGATGGATGGA 57.734 45.455 0.00 0.00 0.00 3.41
55 56 4.620723 AGTGTGTAGTAGGATGGATGGAA 58.379 43.478 0.00 0.00 0.00 3.53
56 57 5.219739 AGTGTGTAGTAGGATGGATGGAAT 58.780 41.667 0.00 0.00 0.00 3.01
57 58 5.667626 AGTGTGTAGTAGGATGGATGGAATT 59.332 40.000 0.00 0.00 0.00 2.17
58 59 5.760253 GTGTGTAGTAGGATGGATGGAATTG 59.240 44.000 0.00 0.00 0.00 2.32
59 60 5.428457 TGTGTAGTAGGATGGATGGAATTGT 59.572 40.000 0.00 0.00 0.00 2.71
60 61 6.069673 TGTGTAGTAGGATGGATGGAATTGTT 60.070 38.462 0.00 0.00 0.00 2.83
61 62 6.828785 GTGTAGTAGGATGGATGGAATTGTTT 59.171 38.462 0.00 0.00 0.00 2.83
62 63 6.828273 TGTAGTAGGATGGATGGAATTGTTTG 59.172 38.462 0.00 0.00 0.00 2.93
63 64 5.203528 AGTAGGATGGATGGAATTGTTTGG 58.796 41.667 0.00 0.00 0.00 3.28
64 65 4.065214 AGGATGGATGGAATTGTTTGGT 57.935 40.909 0.00 0.00 0.00 3.67
65 66 4.428570 AGGATGGATGGAATTGTTTGGTT 58.571 39.130 0.00 0.00 0.00 3.67
66 67 4.845796 AGGATGGATGGAATTGTTTGGTTT 59.154 37.500 0.00 0.00 0.00 3.27
67 68 4.937015 GGATGGATGGAATTGTTTGGTTTG 59.063 41.667 0.00 0.00 0.00 2.93
68 69 4.348863 TGGATGGAATTGTTTGGTTTGG 57.651 40.909 0.00 0.00 0.00 3.28
69 70 3.713764 TGGATGGAATTGTTTGGTTTGGT 59.286 39.130 0.00 0.00 0.00 3.67
70 71 4.164988 TGGATGGAATTGTTTGGTTTGGTT 59.835 37.500 0.00 0.00 0.00 3.67
71 72 5.129634 GGATGGAATTGTTTGGTTTGGTTT 58.870 37.500 0.00 0.00 0.00 3.27
72 73 5.008514 GGATGGAATTGTTTGGTTTGGTTTG 59.991 40.000 0.00 0.00 0.00 2.93
73 74 4.911390 TGGAATTGTTTGGTTTGGTTTGT 58.089 34.783 0.00 0.00 0.00 2.83
74 75 4.938226 TGGAATTGTTTGGTTTGGTTTGTC 59.062 37.500 0.00 0.00 0.00 3.18
75 76 5.182487 GGAATTGTTTGGTTTGGTTTGTCT 58.818 37.500 0.00 0.00 0.00 3.41
76 77 5.645929 GGAATTGTTTGGTTTGGTTTGTCTT 59.354 36.000 0.00 0.00 0.00 3.01
77 78 6.403092 GGAATTGTTTGGTTTGGTTTGTCTTG 60.403 38.462 0.00 0.00 0.00 3.02
78 79 3.931578 TGTTTGGTTTGGTTTGTCTTGG 58.068 40.909 0.00 0.00 0.00 3.61
79 80 3.325135 TGTTTGGTTTGGTTTGTCTTGGT 59.675 39.130 0.00 0.00 0.00 3.67
80 81 3.601443 TTGGTTTGGTTTGTCTTGGTG 57.399 42.857 0.00 0.00 0.00 4.17
81 82 2.808919 TGGTTTGGTTTGTCTTGGTGA 58.191 42.857 0.00 0.00 0.00 4.02
82 83 3.370104 TGGTTTGGTTTGTCTTGGTGAT 58.630 40.909 0.00 0.00 0.00 3.06
83 84 3.383185 TGGTTTGGTTTGTCTTGGTGATC 59.617 43.478 0.00 0.00 0.00 2.92
84 85 3.383185 GGTTTGGTTTGTCTTGGTGATCA 59.617 43.478 0.00 0.00 0.00 2.92
85 86 4.359706 GTTTGGTTTGTCTTGGTGATCAC 58.640 43.478 17.91 17.91 0.00 3.06
86 87 2.217750 TGGTTTGTCTTGGTGATCACG 58.782 47.619 19.33 6.34 0.00 4.35
87 88 2.218603 GGTTTGTCTTGGTGATCACGT 58.781 47.619 19.33 0.00 0.00 4.49
88 89 2.616842 GGTTTGTCTTGGTGATCACGTT 59.383 45.455 19.33 0.00 0.00 3.99
89 90 3.066203 GGTTTGTCTTGGTGATCACGTTT 59.934 43.478 19.33 0.00 0.00 3.60
90 91 3.961477 TTGTCTTGGTGATCACGTTTG 57.039 42.857 19.33 9.58 0.00 2.93
91 92 3.186702 TGTCTTGGTGATCACGTTTGA 57.813 42.857 19.33 11.60 35.73 2.69
92 93 3.738982 TGTCTTGGTGATCACGTTTGAT 58.261 40.909 19.33 0.00 45.78 2.57
93 94 3.498018 TGTCTTGGTGATCACGTTTGATG 59.502 43.478 19.33 5.69 42.95 3.07
94 95 3.745975 GTCTTGGTGATCACGTTTGATGA 59.254 43.478 19.33 7.75 42.95 2.92
95 96 4.393062 GTCTTGGTGATCACGTTTGATGAT 59.607 41.667 19.33 0.00 42.95 2.45
96 97 4.392754 TCTTGGTGATCACGTTTGATGATG 59.607 41.667 19.33 1.52 42.95 3.07
97 98 3.936564 TGGTGATCACGTTTGATGATGA 58.063 40.909 19.33 0.00 42.95 2.92
98 99 4.322567 TGGTGATCACGTTTGATGATGAA 58.677 39.130 19.33 0.00 42.95 2.57
99 100 4.392754 TGGTGATCACGTTTGATGATGAAG 59.607 41.667 19.33 0.00 42.95 3.02
100 101 4.337763 GTGATCACGTTTGATGATGAAGC 58.662 43.478 10.69 0.00 42.95 3.86
101 102 4.002316 TGATCACGTTTGATGATGAAGCA 58.998 39.130 0.00 0.00 42.95 3.91
102 103 3.811722 TCACGTTTGATGATGAAGCAC 57.188 42.857 0.00 0.00 0.00 4.40
103 104 2.483877 TCACGTTTGATGATGAAGCACC 59.516 45.455 0.00 0.00 0.00 5.01
104 105 2.485426 CACGTTTGATGATGAAGCACCT 59.515 45.455 0.00 0.00 0.00 4.00
105 106 2.744202 ACGTTTGATGATGAAGCACCTC 59.256 45.455 0.00 0.00 0.00 3.85
106 107 3.005554 CGTTTGATGATGAAGCACCTCT 58.994 45.455 0.00 0.00 0.00 3.69
107 108 3.063180 CGTTTGATGATGAAGCACCTCTC 59.937 47.826 0.00 0.00 0.00 3.20
108 109 4.260170 GTTTGATGATGAAGCACCTCTCT 58.740 43.478 0.00 0.00 0.00 3.10
109 110 3.815856 TGATGATGAAGCACCTCTCTC 57.184 47.619 0.00 0.00 0.00 3.20
110 111 2.433604 TGATGATGAAGCACCTCTCTCC 59.566 50.000 0.00 0.00 0.00 3.71
111 112 1.198713 TGATGAAGCACCTCTCTCCC 58.801 55.000 0.00 0.00 0.00 4.30
112 113 1.273495 TGATGAAGCACCTCTCTCCCT 60.273 52.381 0.00 0.00 0.00 4.20
113 114 1.836802 GATGAAGCACCTCTCTCCCTT 59.163 52.381 0.00 0.00 0.00 3.95
114 115 1.734655 TGAAGCACCTCTCTCCCTTT 58.265 50.000 0.00 0.00 0.00 3.11
115 116 2.057922 TGAAGCACCTCTCTCCCTTTT 58.942 47.619 0.00 0.00 0.00 2.27
116 117 2.443255 TGAAGCACCTCTCTCCCTTTTT 59.557 45.455 0.00 0.00 0.00 1.94
117 118 2.575805 AGCACCTCTCTCCCTTTTTG 57.424 50.000 0.00 0.00 0.00 2.44
118 119 0.884514 GCACCTCTCTCCCTTTTTGC 59.115 55.000 0.00 0.00 0.00 3.68
119 120 1.539157 CACCTCTCTCCCTTTTTGCC 58.461 55.000 0.00 0.00 0.00 4.52
120 121 1.149101 ACCTCTCTCCCTTTTTGCCA 58.851 50.000 0.00 0.00 0.00 4.92
121 122 1.713078 ACCTCTCTCCCTTTTTGCCAT 59.287 47.619 0.00 0.00 0.00 4.40
160 161 5.945784 TGATGTCCATTTAGGGAAGTTGAAG 59.054 40.000 0.00 0.00 39.05 3.02
166 167 7.713073 GTCCATTTAGGGAAGTTGAAGATCTAG 59.287 40.741 0.00 0.00 39.05 2.43
185 186 9.826574 AGATCTAGTGTTTTTAGTGTTGTGTTA 57.173 29.630 0.00 0.00 0.00 2.41
190 191 8.276252 AGTGTTTTTAGTGTTGTGTTAGTGAT 57.724 30.769 0.00 0.00 0.00 3.06
191 192 9.386010 AGTGTTTTTAGTGTTGTGTTAGTGATA 57.614 29.630 0.00 0.00 0.00 2.15
194 195 9.113876 GTTTTTAGTGTTGTGTTAGTGATATGC 57.886 33.333 0.00 0.00 0.00 3.14
195 196 6.978343 TTAGTGTTGTGTTAGTGATATGCC 57.022 37.500 0.00 0.00 0.00 4.40
196 197 5.165961 AGTGTTGTGTTAGTGATATGCCT 57.834 39.130 0.00 0.00 0.00 4.75
197 198 5.560724 AGTGTTGTGTTAGTGATATGCCTT 58.439 37.500 0.00 0.00 0.00 4.35
198 199 6.707290 AGTGTTGTGTTAGTGATATGCCTTA 58.293 36.000 0.00 0.00 0.00 2.69
199 200 7.165485 AGTGTTGTGTTAGTGATATGCCTTAA 58.835 34.615 0.00 0.00 0.00 1.85
200 201 7.663905 AGTGTTGTGTTAGTGATATGCCTTAAA 59.336 33.333 0.00 0.00 0.00 1.52
201 202 8.293867 GTGTTGTGTTAGTGATATGCCTTAAAA 58.706 33.333 0.00 0.00 0.00 1.52
203 204 9.124807 GTTGTGTTAGTGATATGCCTTAAAAAC 57.875 33.333 0.00 0.00 0.00 2.43
204 205 7.822658 TGTGTTAGTGATATGCCTTAAAAACC 58.177 34.615 0.00 0.00 0.00 3.27
205 206 7.668052 TGTGTTAGTGATATGCCTTAAAAACCT 59.332 33.333 0.00 0.00 0.00 3.50
207 208 9.084533 TGTTAGTGATATGCCTTAAAAACCTTT 57.915 29.630 0.00 0.00 0.00 3.11
210 211 7.758495 AGTGATATGCCTTAAAAACCTTTACG 58.242 34.615 0.00 0.00 0.00 3.18
211 212 6.471198 GTGATATGCCTTAAAAACCTTTACGC 59.529 38.462 0.00 0.00 0.00 4.42
212 213 4.857509 ATGCCTTAAAAACCTTTACGCA 57.142 36.364 0.00 0.00 37.13 5.24
214 215 4.551388 TGCCTTAAAAACCTTTACGCATG 58.449 39.130 0.00 0.00 31.91 4.06
215 216 3.366724 GCCTTAAAAACCTTTACGCATGC 59.633 43.478 7.91 7.91 0.00 4.06
217 218 4.551388 CTTAAAAACCTTTACGCATGCCA 58.449 39.130 13.15 0.00 0.00 4.92
218 219 2.432206 AAAACCTTTACGCATGCCAC 57.568 45.000 13.15 0.00 0.00 5.01
220 221 1.323412 AACCTTTACGCATGCCACAA 58.677 45.000 13.15 0.22 0.00 3.33
221 222 1.544724 ACCTTTACGCATGCCACAAT 58.455 45.000 13.15 0.00 0.00 2.71
222 223 1.202114 ACCTTTACGCATGCCACAATG 59.798 47.619 13.15 5.89 0.00 2.82
223 224 1.202114 CCTTTACGCATGCCACAATGT 59.798 47.619 13.15 5.46 0.00 2.71
224 225 2.352617 CCTTTACGCATGCCACAATGTT 60.353 45.455 13.15 0.00 0.00 2.71
225 226 3.119673 CCTTTACGCATGCCACAATGTTA 60.120 43.478 13.15 0.00 0.00 2.41
226 227 4.480541 CTTTACGCATGCCACAATGTTAA 58.519 39.130 13.15 2.45 0.00 2.01
227 228 2.346099 ACGCATGCCACAATGTTAAC 57.654 45.000 13.15 0.00 0.00 2.01
228 229 1.611006 ACGCATGCCACAATGTTAACA 59.389 42.857 13.15 11.41 0.00 2.41
229 230 1.984990 CGCATGCCACAATGTTAACAC 59.015 47.619 11.22 0.00 0.00 3.32
230 231 1.984990 GCATGCCACAATGTTAACACG 59.015 47.619 11.22 7.87 0.00 4.49
231 232 2.351253 GCATGCCACAATGTTAACACGA 60.351 45.455 11.22 0.00 0.00 4.35
232 233 3.491356 CATGCCACAATGTTAACACGAG 58.509 45.455 11.22 6.34 0.00 4.18
233 234 2.566913 TGCCACAATGTTAACACGAGT 58.433 42.857 11.22 7.00 0.00 4.18
234 235 2.946329 TGCCACAATGTTAACACGAGTT 59.054 40.909 11.22 3.19 41.74 3.01
235 236 3.378742 TGCCACAATGTTAACACGAGTTT 59.621 39.130 11.22 0.00 39.15 2.66
236 237 3.972502 GCCACAATGTTAACACGAGTTTC 59.027 43.478 11.22 0.00 39.15 2.78
237 238 4.533222 CCACAATGTTAACACGAGTTTCC 58.467 43.478 11.22 0.00 39.15 3.13
238 239 4.533222 CACAATGTTAACACGAGTTTCCC 58.467 43.478 11.22 0.00 39.15 3.97
239 240 4.274950 CACAATGTTAACACGAGTTTCCCT 59.725 41.667 11.22 0.00 39.15 4.20
240 241 4.514066 ACAATGTTAACACGAGTTTCCCTC 59.486 41.667 11.22 0.00 39.15 4.30
255 256 8.751302 GAGTTTCCCTCGCAAAAATAAAATAA 57.249 30.769 0.00 0.00 0.00 1.40
256 257 9.198837 GAGTTTCCCTCGCAAAAATAAAATAAA 57.801 29.630 0.00 0.00 0.00 1.40
257 258 9.549078 AGTTTCCCTCGCAAAAATAAAATAAAA 57.451 25.926 0.00 0.00 0.00 1.52
260 261 9.495572 TTCCCTCGCAAAAATAAAATAAAATGT 57.504 25.926 0.00 0.00 0.00 2.71
261 262 9.495572 TCCCTCGCAAAAATAAAATAAAATGTT 57.504 25.926 0.00 0.00 0.00 2.71
317 318 1.144936 GCGCTCTTCCTATGTGGCT 59.855 57.895 0.00 0.00 35.26 4.75
323 324 4.576463 CGCTCTTCCTATGTGGCTAATTTT 59.424 41.667 0.00 0.00 35.26 1.82
325 326 6.260050 CGCTCTTCCTATGTGGCTAATTTTAA 59.740 38.462 0.00 0.00 35.26 1.52
326 327 7.041098 CGCTCTTCCTATGTGGCTAATTTTAAT 60.041 37.037 0.00 0.00 35.26 1.40
327 328 8.633561 GCTCTTCCTATGTGGCTAATTTTAATT 58.366 33.333 0.00 0.00 35.26 1.40
329 330 9.693739 TCTTCCTATGTGGCTAATTTTAATTCA 57.306 29.630 0.00 0.00 35.26 2.57
330 331 9.956720 CTTCCTATGTGGCTAATTTTAATTCAG 57.043 33.333 0.00 0.00 35.26 3.02
332 333 8.058847 TCCTATGTGGCTAATTTTAATTCAGGT 58.941 33.333 0.00 0.00 35.26 4.00
333 334 8.695456 CCTATGTGGCTAATTTTAATTCAGGTT 58.305 33.333 0.00 0.00 0.00 3.50
335 336 8.776376 ATGTGGCTAATTTTAATTCAGGTTTG 57.224 30.769 0.00 0.00 0.00 2.93
336 337 7.957002 TGTGGCTAATTTTAATTCAGGTTTGA 58.043 30.769 0.00 0.00 0.00 2.69
337 338 8.424918 TGTGGCTAATTTTAATTCAGGTTTGAA 58.575 29.630 0.00 0.00 46.67 2.69
338 339 8.708742 GTGGCTAATTTTAATTCAGGTTTGAAC 58.291 33.333 0.00 0.00 45.54 3.18
339 340 7.596995 TGGCTAATTTTAATTCAGGTTTGAACG 59.403 33.333 0.00 0.00 45.54 3.95
340 341 7.062956 GGCTAATTTTAATTCAGGTTTGAACGG 59.937 37.037 0.00 0.00 45.54 4.44
341 342 7.597369 GCTAATTTTAATTCAGGTTTGAACGGT 59.403 33.333 0.00 0.00 45.54 4.83
342 343 9.471084 CTAATTTTAATTCAGGTTTGAACGGTT 57.529 29.630 0.00 0.00 45.54 4.44
343 344 7.940178 ATTTTAATTCAGGTTTGAACGGTTC 57.060 32.000 13.86 13.86 45.54 3.62
344 345 6.702716 TTTAATTCAGGTTTGAACGGTTCT 57.297 33.333 20.53 0.00 45.54 3.01
345 346 4.830826 AATTCAGGTTTGAACGGTTCTC 57.169 40.909 20.53 11.27 45.54 2.87
346 347 2.992124 TCAGGTTTGAACGGTTCTCA 57.008 45.000 20.53 5.91 0.00 3.27
347 348 3.485463 TCAGGTTTGAACGGTTCTCAT 57.515 42.857 20.53 7.36 0.00 2.90
348 349 3.815809 TCAGGTTTGAACGGTTCTCATT 58.184 40.909 20.53 1.84 0.00 2.57
349 350 3.813166 TCAGGTTTGAACGGTTCTCATTC 59.187 43.478 20.53 7.76 0.00 2.67
350 351 3.058224 CAGGTTTGAACGGTTCTCATTCC 60.058 47.826 20.53 14.66 0.00 3.01
351 352 2.882137 GGTTTGAACGGTTCTCATTCCA 59.118 45.455 20.53 0.00 0.00 3.53
352 353 3.316868 GGTTTGAACGGTTCTCATTCCAA 59.683 43.478 20.53 3.91 0.00 3.53
353 354 4.022329 GGTTTGAACGGTTCTCATTCCAAT 60.022 41.667 20.53 0.00 0.00 3.16
355 356 5.782893 TTGAACGGTTCTCATTCCAATTT 57.217 34.783 20.53 0.00 0.00 1.82
357 358 6.885952 TGAACGGTTCTCATTCCAATTTTA 57.114 33.333 20.53 0.00 0.00 1.52
358 359 7.278461 TGAACGGTTCTCATTCCAATTTTAA 57.722 32.000 20.53 0.00 0.00 1.52
360 361 8.364142 TGAACGGTTCTCATTCCAATTTTAATT 58.636 29.630 20.53 0.00 0.00 1.40
361 362 9.849166 GAACGGTTCTCATTCCAATTTTAATTA 57.151 29.630 13.49 0.00 0.00 1.40
385 386 4.647424 TCAAGTTTGTGTTCATGAACCC 57.353 40.909 30.66 22.56 40.46 4.11
386 387 3.066064 TCAAGTTTGTGTTCATGAACCCG 59.934 43.478 30.66 9.92 40.46 5.28
387 388 2.925724 AGTTTGTGTTCATGAACCCGA 58.074 42.857 30.66 19.59 40.46 5.14
388 389 3.283751 AGTTTGTGTTCATGAACCCGAA 58.716 40.909 30.66 23.70 40.46 4.30
389 390 3.315191 AGTTTGTGTTCATGAACCCGAAG 59.685 43.478 30.66 0.00 40.46 3.79
391 392 2.217750 TGTGTTCATGAACCCGAAGTG 58.782 47.619 30.66 0.00 40.46 3.16
393 394 2.616842 GTGTTCATGAACCCGAAGTGTT 59.383 45.455 30.66 0.00 40.46 3.32
395 396 4.273969 GTGTTCATGAACCCGAAGTGTTTA 59.726 41.667 30.66 9.08 40.46 2.01
396 397 4.882427 TGTTCATGAACCCGAAGTGTTTAA 59.118 37.500 30.66 8.89 40.46 1.52
398 399 6.711194 TGTTCATGAACCCGAAGTGTTTAATA 59.289 34.615 30.66 7.88 40.46 0.98
400 401 8.885722 GTTCATGAACCCGAAGTGTTTAATATA 58.114 33.333 25.26 0.00 35.36 0.86
402 403 7.713507 TCATGAACCCGAAGTGTTTAATATAGG 59.286 37.037 0.00 0.00 0.00 2.57
405 406 8.538701 TGAACCCGAAGTGTTTAATATAGGTAA 58.461 33.333 0.00 0.00 0.00 2.85
406 407 9.551734 GAACCCGAAGTGTTTAATATAGGTAAT 57.448 33.333 0.00 0.00 0.00 1.89
407 408 8.897872 ACCCGAAGTGTTTAATATAGGTAATG 57.102 34.615 0.00 0.00 0.00 1.90
408 409 8.488668 ACCCGAAGTGTTTAATATAGGTAATGT 58.511 33.333 0.00 0.00 0.00 2.71
409 410 8.985805 CCCGAAGTGTTTAATATAGGTAATGTC 58.014 37.037 0.00 0.00 0.00 3.06
410 411 9.537192 CCGAAGTGTTTAATATAGGTAATGTCA 57.463 33.333 0.00 0.00 0.00 3.58
424 425 7.691993 AGGTAATGTCATTACTAATCCTGGT 57.308 36.000 27.04 6.18 43.53 4.00
426 427 9.393786 AGGTAATGTCATTACTAATCCTGGTAT 57.606 33.333 27.04 0.70 43.53 2.73
427 428 9.654663 GGTAATGTCATTACTAATCCTGGTATC 57.345 37.037 27.04 8.96 43.53 2.24
428 429 9.654663 GTAATGTCATTACTAATCCTGGTATCC 57.345 37.037 23.04 0.00 41.40 2.59
429 430 6.340962 TGTCATTACTAATCCTGGTATCCG 57.659 41.667 0.00 0.00 0.00 4.18
440 469 3.899052 CTGGTATCCGGGAACAAACTA 57.101 47.619 0.00 0.00 0.00 2.24
441 470 4.210724 CTGGTATCCGGGAACAAACTAA 57.789 45.455 0.00 0.00 0.00 2.24
442 471 4.581868 CTGGTATCCGGGAACAAACTAAA 58.418 43.478 0.00 0.00 0.00 1.85
451 850 5.337652 CCGGGAACAAACTAAAGAGAGATCT 60.338 44.000 0.00 0.00 0.00 2.75
452 851 6.127423 CCGGGAACAAACTAAAGAGAGATCTA 60.127 42.308 0.00 0.00 0.00 1.98
462 861 7.543756 ACTAAAGAGAGATCTAGTGCTTGAAC 58.456 38.462 0.00 0.00 0.00 3.18
478 877 9.944376 AGTGCTTGAACTAGAAGTCATTATAAA 57.056 29.630 0.00 0.00 0.00 1.40
520 920 3.558829 AGATAATCATCTGTGCGTTGCAG 59.441 43.478 0.00 0.00 40.15 4.41
594 1017 7.671495 ATTTGATTTGATAAACACCTTTGGC 57.329 32.000 0.00 0.00 0.00 4.52
595 1018 5.146010 TGATTTGATAAACACCTTTGGCC 57.854 39.130 0.00 0.00 0.00 5.36
596 1019 4.837860 TGATTTGATAAACACCTTTGGCCT 59.162 37.500 3.32 0.00 0.00 5.19
597 1020 5.306678 TGATTTGATAAACACCTTTGGCCTT 59.693 36.000 3.32 0.00 0.00 4.35
598 1021 5.622346 TTTGATAAACACCTTTGGCCTTT 57.378 34.783 3.32 0.00 0.00 3.11
599 1022 5.622346 TTGATAAACACCTTTGGCCTTTT 57.378 34.783 3.32 0.00 0.00 2.27
600 1023 5.622346 TGATAAACACCTTTGGCCTTTTT 57.378 34.783 3.32 0.00 0.00 1.94
641 1064 6.844097 ATTTTAGTTCAATAAAAGGCGGGA 57.156 33.333 0.00 0.00 37.87 5.14
644 1067 3.492337 AGTTCAATAAAAGGCGGGACAA 58.508 40.909 0.00 0.00 0.00 3.18
646 1069 5.258051 AGTTCAATAAAAGGCGGGACAATA 58.742 37.500 0.00 0.00 0.00 1.90
647 1070 5.891551 AGTTCAATAAAAGGCGGGACAATAT 59.108 36.000 0.00 0.00 0.00 1.28
658 1081 3.867216 GCGGGACAATATAGCCGGTTAAT 60.867 47.826 0.79 0.00 0.00 1.40
659 1082 4.621274 GCGGGACAATATAGCCGGTTAATA 60.621 45.833 0.79 0.00 0.00 0.98
660 1083 5.481105 CGGGACAATATAGCCGGTTAATAA 58.519 41.667 0.79 0.00 0.00 1.40
661 1084 5.933463 CGGGACAATATAGCCGGTTAATAAA 59.067 40.000 0.79 0.00 0.00 1.40
662 1085 6.596497 CGGGACAATATAGCCGGTTAATAAAT 59.404 38.462 0.79 0.00 0.00 1.40
663 1086 7.413657 CGGGACAATATAGCCGGTTAATAAATG 60.414 40.741 0.79 5.14 0.00 2.32
664 1087 7.608761 GGGACAATATAGCCGGTTAATAAATGA 59.391 37.037 0.79 0.00 0.00 2.57
665 1088 9.005777 GGACAATATAGCCGGTTAATAAATGAA 57.994 33.333 0.79 0.00 0.00 2.57
736 1159 1.935933 CACATGCTCGTAGTAACCCC 58.064 55.000 0.00 0.00 0.00 4.95
738 1161 0.828022 CATGCTCGTAGTAACCCCCA 59.172 55.000 0.00 0.00 0.00 4.96
739 1162 1.416401 CATGCTCGTAGTAACCCCCAT 59.584 52.381 0.00 0.00 0.00 4.00
740 1163 1.117150 TGCTCGTAGTAACCCCCATC 58.883 55.000 0.00 0.00 0.00 3.51
764 1195 1.201414 GCACGTGGGACAATTAAAGGG 59.799 52.381 18.88 0.00 44.16 3.95
765 1196 1.201414 CACGTGGGACAATTAAAGGGC 59.799 52.381 7.95 0.00 44.16 5.19
766 1197 1.074889 ACGTGGGACAATTAAAGGGCT 59.925 47.619 0.00 0.00 44.16 5.19
768 1199 1.204704 GTGGGACAATTAAAGGGCTGC 59.795 52.381 0.00 0.00 44.16 5.25
769 1200 1.203112 TGGGACAATTAAAGGGCTGCA 60.203 47.619 0.50 0.00 31.92 4.41
771 1202 1.478105 GGACAATTAAAGGGCTGCAGG 59.522 52.381 17.12 0.00 0.00 4.85
837 1268 3.551496 CTCCACCACCACCACGCAT 62.551 63.158 0.00 0.00 0.00 4.73
906 1349 0.530211 CTGCTGAAGCCCATCTCTCG 60.530 60.000 0.00 0.00 41.18 4.04
914 1357 2.192861 CCCATCTCTCGCTCTCGCT 61.193 63.158 0.00 0.00 35.26 4.93
918 1361 0.465460 ATCTCTCGCTCTCGCTCCTT 60.465 55.000 0.00 0.00 35.26 3.36
920 1363 2.103934 CTCGCTCTCGCTCCTTGG 59.896 66.667 0.00 0.00 35.26 3.61
967 1421 3.998110 CTGCGCGCTAGCTGCATC 61.998 66.667 33.29 17.68 45.86 3.91
970 1424 2.664185 CGCGCTAGCTGCATCCAT 60.664 61.111 24.19 0.00 43.06 3.41
971 1425 2.665395 CGCGCTAGCTGCATCCATC 61.665 63.158 24.19 1.83 43.06 3.51
972 1426 2.323580 GCGCTAGCTGCATCCATCC 61.324 63.158 21.32 0.00 43.06 3.51
973 1427 1.070275 CGCTAGCTGCATCCATCCA 59.930 57.895 13.93 0.00 43.06 3.41
974 1428 0.949588 CGCTAGCTGCATCCATCCAG 60.950 60.000 13.93 0.00 43.06 3.86
975 1429 0.395686 GCTAGCTGCATCCATCCAGA 59.604 55.000 7.70 0.00 42.31 3.86
976 1430 1.608542 GCTAGCTGCATCCATCCAGAG 60.609 57.143 7.70 0.00 42.31 3.35
977 1431 0.395686 TAGCTGCATCCATCCAGAGC 59.604 55.000 1.02 0.00 0.00 4.09
978 1432 1.897615 GCTGCATCCATCCAGAGCC 60.898 63.158 0.00 0.00 0.00 4.70
979 1433 1.228184 CTGCATCCATCCAGAGCCC 60.228 63.158 0.00 0.00 0.00 5.19
980 1434 1.991339 CTGCATCCATCCAGAGCCCA 61.991 60.000 0.00 0.00 0.00 5.36
981 1435 1.228184 GCATCCATCCAGAGCCCAG 60.228 63.158 0.00 0.00 0.00 4.45
1410 1902 3.030611 AACCCCCACCACCACCAA 61.031 61.111 0.00 0.00 0.00 3.67
1554 2046 4.351938 CGGACGAGGTTCACGGCA 62.352 66.667 0.00 0.00 40.86 5.69
1565 2057 4.463879 CACGGCAGAGCAGAGGGG 62.464 72.222 0.00 0.00 0.00 4.79
1638 2130 4.792804 GCCCTGGTGGAGCAGCTC 62.793 72.222 14.69 14.69 35.39 4.09
1748 2240 0.915904 CAACAGCAGCAACAACAACG 59.084 50.000 0.00 0.00 0.00 4.10
1833 2347 0.983378 CCGACAGGGGAAGAGGGATT 60.983 60.000 0.00 0.00 0.00 3.01
1846 2360 5.833667 GGAAGAGGGATTAATTAAACAGGGG 59.166 44.000 1.21 0.00 0.00 4.79
1849 2363 5.103643 AGAGGGATTAATTAAACAGGGGGAC 60.104 44.000 1.21 0.00 0.00 4.46
1864 2378 2.551071 GGGGGACTGAAGTGAAGTGAAG 60.551 54.545 0.00 0.00 0.00 3.02
1866 2380 1.795286 GGACTGAAGTGAAGTGAAGCG 59.205 52.381 0.00 0.00 0.00 4.68
1901 2415 9.076781 TCTCTAATCTTCATCATTGTCTCCTAG 57.923 37.037 0.00 0.00 0.00 3.02
1972 2493 5.356882 TCCTTTTGTTTCTAGTTGATGCG 57.643 39.130 0.00 0.00 0.00 4.73
2012 2553 2.020016 GCACTCAACGCGCATACG 59.980 61.111 5.73 0.00 44.07 3.06
2036 2577 8.932791 ACGTACATTTGTCCTTATTTTCTACTG 58.067 33.333 0.00 0.00 0.00 2.74
2037 2578 8.932791 CGTACATTTGTCCTTATTTTCTACTGT 58.067 33.333 0.00 0.00 0.00 3.55
2040 2581 8.932791 ACATTTGTCCTTATTTTCTACTGTACG 58.067 33.333 0.00 0.00 0.00 3.67
2058 2599 4.634004 TGTACGTATTTGATTTGGCCTCTG 59.366 41.667 3.32 0.00 0.00 3.35
2194 2744 5.358298 AATGCAGAATCATCGATCATGTG 57.642 39.130 0.00 0.00 33.66 3.21
2205 2755 2.499693 TCGATCATGTGGTTGGAGCTTA 59.500 45.455 0.00 0.00 0.00 3.09
2268 2818 6.820656 AGACAGTGATAAGACAAATCATGGAC 59.179 38.462 0.00 0.00 35.87 4.02
2300 2860 3.119065 TGACAAGTGAACAACTGGTACGA 60.119 43.478 0.00 0.00 43.62 3.43
2321 2882 7.087409 ACGAGCATGAATTGATTTAACATCA 57.913 32.000 0.00 0.00 0.00 3.07
2326 2887 6.704493 GCATGAATTGATTTAACATCAGCCAT 59.296 34.615 0.00 0.00 0.00 4.40
2356 2930 5.648092 ACTTACTGGGAACATATGCTTGAAC 59.352 40.000 1.58 0.00 41.51 3.18
2379 2953 5.880332 ACGTGACTTAATTATCAGCACCAAT 59.120 36.000 0.00 0.00 0.00 3.16
2430 3004 1.993370 GAGTACTGTTCATCCGTGTGC 59.007 52.381 0.00 0.00 0.00 4.57
2432 3006 0.315886 TACTGTTCATCCGTGTGCGT 59.684 50.000 0.00 0.00 36.15 5.24
2433 3007 0.944311 ACTGTTCATCCGTGTGCGTC 60.944 55.000 0.00 0.00 36.15 5.19
2594 3329 3.384789 GTCAGTCACTCACATGGCCTATA 59.615 47.826 3.32 0.00 0.00 1.31
2730 3467 4.408921 CAGTAATGAGTACCCATCCAAGGA 59.591 45.833 0.00 0.00 32.58 3.36
2747 3484 3.922171 AGGAAGGATGATGAACCTGTC 57.078 47.619 0.00 0.00 36.56 3.51
2748 3485 3.184628 AGGAAGGATGATGAACCTGTCA 58.815 45.455 0.00 0.00 41.67 3.58
2749 3486 3.199508 AGGAAGGATGATGAACCTGTCAG 59.800 47.826 0.00 0.00 40.43 3.51
2750 3487 2.706339 AGGATGATGAACCTGTCAGC 57.294 50.000 0.00 0.00 43.29 4.26
2751 3488 1.134580 AGGATGATGAACCTGTCAGCG 60.135 52.381 0.00 0.00 46.10 5.18
2752 3489 1.406069 GGATGATGAACCTGTCAGCGT 60.406 52.381 0.00 0.00 46.10 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.937175 CACTTTAATCTTCGAAAACTTCTTTCT 57.063 29.630 0.00 0.00 0.00 2.52
11 12 9.717892 ACACTTTAATCTTCGAAAACTTCTTTC 57.282 29.630 0.00 0.00 0.00 2.62
12 13 9.503427 CACACTTTAATCTTCGAAAACTTCTTT 57.497 29.630 0.00 0.00 0.00 2.52
13 14 8.674607 ACACACTTTAATCTTCGAAAACTTCTT 58.325 29.630 0.00 0.00 0.00 2.52
14 15 8.209917 ACACACTTTAATCTTCGAAAACTTCT 57.790 30.769 0.00 0.00 0.00 2.85
15 16 9.582223 CTACACACTTTAATCTTCGAAAACTTC 57.418 33.333 0.00 0.00 0.00 3.01
16 17 9.106070 ACTACACACTTTAATCTTCGAAAACTT 57.894 29.630 0.00 0.00 0.00 2.66
17 18 8.658499 ACTACACACTTTAATCTTCGAAAACT 57.342 30.769 0.00 0.00 0.00 2.66
19 20 9.199982 CCTACTACACACTTTAATCTTCGAAAA 57.800 33.333 0.00 0.00 0.00 2.29
20 21 8.579006 TCCTACTACACACTTTAATCTTCGAAA 58.421 33.333 0.00 0.00 0.00 3.46
21 22 8.114331 TCCTACTACACACTTTAATCTTCGAA 57.886 34.615 0.00 0.00 0.00 3.71
22 23 7.692460 TCCTACTACACACTTTAATCTTCGA 57.308 36.000 0.00 0.00 0.00 3.71
23 24 7.435488 CCATCCTACTACACACTTTAATCTTCG 59.565 40.741 0.00 0.00 0.00 3.79
24 25 8.475639 TCCATCCTACTACACACTTTAATCTTC 58.524 37.037 0.00 0.00 0.00 2.87
25 26 8.375493 TCCATCCTACTACACACTTTAATCTT 57.625 34.615 0.00 0.00 0.00 2.40
26 27 7.973048 TCCATCCTACTACACACTTTAATCT 57.027 36.000 0.00 0.00 0.00 2.40
27 28 7.657761 CCATCCATCCTACTACACACTTTAATC 59.342 40.741 0.00 0.00 0.00 1.75
28 29 7.347222 TCCATCCATCCTACTACACACTTTAAT 59.653 37.037 0.00 0.00 0.00 1.40
29 30 6.670464 TCCATCCATCCTACTACACACTTTAA 59.330 38.462 0.00 0.00 0.00 1.52
30 31 6.199376 TCCATCCATCCTACTACACACTTTA 58.801 40.000 0.00 0.00 0.00 1.85
31 32 5.030147 TCCATCCATCCTACTACACACTTT 58.970 41.667 0.00 0.00 0.00 2.66
32 33 4.620723 TCCATCCATCCTACTACACACTT 58.379 43.478 0.00 0.00 0.00 3.16
33 34 4.265856 TCCATCCATCCTACTACACACT 57.734 45.455 0.00 0.00 0.00 3.55
34 35 5.552870 ATTCCATCCATCCTACTACACAC 57.447 43.478 0.00 0.00 0.00 3.82
35 36 5.428457 ACAATTCCATCCATCCTACTACACA 59.572 40.000 0.00 0.00 0.00 3.72
36 37 5.930135 ACAATTCCATCCATCCTACTACAC 58.070 41.667 0.00 0.00 0.00 2.90
37 38 6.575244 AACAATTCCATCCATCCTACTACA 57.425 37.500 0.00 0.00 0.00 2.74
38 39 6.263168 CCAAACAATTCCATCCATCCTACTAC 59.737 42.308 0.00 0.00 0.00 2.73
39 40 6.069088 ACCAAACAATTCCATCCATCCTACTA 60.069 38.462 0.00 0.00 0.00 1.82
40 41 5.203528 CCAAACAATTCCATCCATCCTACT 58.796 41.667 0.00 0.00 0.00 2.57
41 42 4.956075 ACCAAACAATTCCATCCATCCTAC 59.044 41.667 0.00 0.00 0.00 3.18
42 43 5.205517 ACCAAACAATTCCATCCATCCTA 57.794 39.130 0.00 0.00 0.00 2.94
43 44 4.065214 ACCAAACAATTCCATCCATCCT 57.935 40.909 0.00 0.00 0.00 3.24
44 45 4.824479 AACCAAACAATTCCATCCATCC 57.176 40.909 0.00 0.00 0.00 3.51
45 46 4.937015 CCAAACCAAACAATTCCATCCATC 59.063 41.667 0.00 0.00 0.00 3.51
46 47 4.350520 ACCAAACCAAACAATTCCATCCAT 59.649 37.500 0.00 0.00 0.00 3.41
47 48 3.713764 ACCAAACCAAACAATTCCATCCA 59.286 39.130 0.00 0.00 0.00 3.41
48 49 4.350368 ACCAAACCAAACAATTCCATCC 57.650 40.909 0.00 0.00 0.00 3.51
49 50 5.588246 ACAAACCAAACCAAACAATTCCATC 59.412 36.000 0.00 0.00 0.00 3.51
50 51 5.504853 ACAAACCAAACCAAACAATTCCAT 58.495 33.333 0.00 0.00 0.00 3.41
51 52 4.911390 ACAAACCAAACCAAACAATTCCA 58.089 34.783 0.00 0.00 0.00 3.53
52 53 5.182487 AGACAAACCAAACCAAACAATTCC 58.818 37.500 0.00 0.00 0.00 3.01
53 54 6.403092 CCAAGACAAACCAAACCAAACAATTC 60.403 38.462 0.00 0.00 0.00 2.17
54 55 5.414144 CCAAGACAAACCAAACCAAACAATT 59.586 36.000 0.00 0.00 0.00 2.32
55 56 4.940654 CCAAGACAAACCAAACCAAACAAT 59.059 37.500 0.00 0.00 0.00 2.71
56 57 4.202367 ACCAAGACAAACCAAACCAAACAA 60.202 37.500 0.00 0.00 0.00 2.83
57 58 3.325135 ACCAAGACAAACCAAACCAAACA 59.675 39.130 0.00 0.00 0.00 2.83
58 59 3.682377 CACCAAGACAAACCAAACCAAAC 59.318 43.478 0.00 0.00 0.00 2.93
59 60 3.578716 TCACCAAGACAAACCAAACCAAA 59.421 39.130 0.00 0.00 0.00 3.28
60 61 3.165875 TCACCAAGACAAACCAAACCAA 58.834 40.909 0.00 0.00 0.00 3.67
61 62 2.808919 TCACCAAGACAAACCAAACCA 58.191 42.857 0.00 0.00 0.00 3.67
62 63 3.383185 TGATCACCAAGACAAACCAAACC 59.617 43.478 0.00 0.00 0.00 3.27
63 64 4.359706 GTGATCACCAAGACAAACCAAAC 58.640 43.478 15.31 0.00 0.00 2.93
64 65 3.066064 CGTGATCACCAAGACAAACCAAA 59.934 43.478 20.03 0.00 0.00 3.28
65 66 2.616376 CGTGATCACCAAGACAAACCAA 59.384 45.455 20.03 0.00 0.00 3.67
66 67 2.217750 CGTGATCACCAAGACAAACCA 58.782 47.619 20.03 0.00 0.00 3.67
67 68 2.218603 ACGTGATCACCAAGACAAACC 58.781 47.619 20.03 0.00 0.00 3.27
68 69 3.963383 AACGTGATCACCAAGACAAAC 57.037 42.857 20.03 0.00 0.00 2.93
69 70 3.942115 TCAAACGTGATCACCAAGACAAA 59.058 39.130 20.03 0.00 0.00 2.83
70 71 3.536570 TCAAACGTGATCACCAAGACAA 58.463 40.909 20.03 0.00 0.00 3.18
71 72 3.186702 TCAAACGTGATCACCAAGACA 57.813 42.857 20.03 0.00 0.00 3.41
72 73 3.745975 TCATCAAACGTGATCACCAAGAC 59.254 43.478 20.03 0.00 42.88 3.01
73 74 4.001618 TCATCAAACGTGATCACCAAGA 57.998 40.909 20.03 12.77 42.88 3.02
74 75 4.392754 TCATCATCAAACGTGATCACCAAG 59.607 41.667 20.03 8.85 42.88 3.61
75 76 4.322567 TCATCATCAAACGTGATCACCAA 58.677 39.130 20.03 1.83 42.88 3.67
76 77 3.936564 TCATCATCAAACGTGATCACCA 58.063 40.909 20.03 0.00 42.88 4.17
77 78 4.728882 GCTTCATCATCAAACGTGATCACC 60.729 45.833 20.03 2.90 42.88 4.02
78 79 4.142838 TGCTTCATCATCAAACGTGATCAC 60.143 41.667 16.21 16.21 42.88 3.06
79 80 4.002316 TGCTTCATCATCAAACGTGATCA 58.998 39.130 0.00 0.00 42.88 2.92
80 81 4.337763 GTGCTTCATCATCAAACGTGATC 58.662 43.478 0.00 0.00 42.88 2.92
81 82 3.127548 GGTGCTTCATCATCAAACGTGAT 59.872 43.478 0.00 0.00 45.80 3.06
82 83 2.483877 GGTGCTTCATCATCAAACGTGA 59.516 45.455 0.00 0.00 38.41 4.35
83 84 2.485426 AGGTGCTTCATCATCAAACGTG 59.515 45.455 0.00 0.00 0.00 4.49
84 85 2.744202 GAGGTGCTTCATCATCAAACGT 59.256 45.455 0.00 0.00 0.00 3.99
85 86 3.005554 AGAGGTGCTTCATCATCAAACG 58.994 45.455 0.00 0.00 0.00 3.60
86 87 4.260170 AGAGAGGTGCTTCATCATCAAAC 58.740 43.478 0.00 0.00 0.00 2.93
87 88 4.511527 GAGAGAGGTGCTTCATCATCAAA 58.488 43.478 0.00 0.00 0.00 2.69
88 89 3.118482 GGAGAGAGGTGCTTCATCATCAA 60.118 47.826 0.00 0.00 0.00 2.57
89 90 2.433604 GGAGAGAGGTGCTTCATCATCA 59.566 50.000 0.00 0.00 0.00 3.07
90 91 2.224257 GGGAGAGAGGTGCTTCATCATC 60.224 54.545 0.00 0.00 0.00 2.92
91 92 1.767681 GGGAGAGAGGTGCTTCATCAT 59.232 52.381 0.00 0.00 0.00 2.45
92 93 1.198713 GGGAGAGAGGTGCTTCATCA 58.801 55.000 0.00 0.00 0.00 3.07
93 94 1.494960 AGGGAGAGAGGTGCTTCATC 58.505 55.000 0.00 0.00 0.00 2.92
94 95 1.963985 AAGGGAGAGAGGTGCTTCAT 58.036 50.000 0.00 0.00 0.00 2.57
95 96 1.734655 AAAGGGAGAGAGGTGCTTCA 58.265 50.000 0.00 0.00 0.00 3.02
96 97 2.816672 CAAAAAGGGAGAGAGGTGCTTC 59.183 50.000 0.00 0.00 0.00 3.86
97 98 2.868899 CAAAAAGGGAGAGAGGTGCTT 58.131 47.619 0.00 0.00 0.00 3.91
98 99 1.546548 GCAAAAAGGGAGAGAGGTGCT 60.547 52.381 0.00 0.00 0.00 4.40
99 100 0.884514 GCAAAAAGGGAGAGAGGTGC 59.115 55.000 0.00 0.00 0.00 5.01
100 101 1.202927 TGGCAAAAAGGGAGAGAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
101 102 1.149101 TGGCAAAAAGGGAGAGAGGT 58.851 50.000 0.00 0.00 0.00 3.85
102 103 2.097825 CATGGCAAAAAGGGAGAGAGG 58.902 52.381 0.00 0.00 0.00 3.69
103 104 2.800250 ACATGGCAAAAAGGGAGAGAG 58.200 47.619 0.00 0.00 0.00 3.20
104 105 2.978156 ACATGGCAAAAAGGGAGAGA 57.022 45.000 0.00 0.00 0.00 3.10
105 106 3.690460 ACTACATGGCAAAAAGGGAGAG 58.310 45.455 0.00 0.00 0.00 3.20
106 107 3.806949 ACTACATGGCAAAAAGGGAGA 57.193 42.857 0.00 0.00 0.00 3.71
107 108 7.823745 ATAATACTACATGGCAAAAAGGGAG 57.176 36.000 0.00 0.00 0.00 4.30
108 109 8.602472 AAATAATACTACATGGCAAAAAGGGA 57.398 30.769 0.00 0.00 0.00 4.20
109 110 8.695456 AGAAATAATACTACATGGCAAAAAGGG 58.305 33.333 0.00 0.00 0.00 3.95
115 116 9.407380 ACATCAAGAAATAATACTACATGGCAA 57.593 29.630 0.00 0.00 0.00 4.52
116 117 8.978874 ACATCAAGAAATAATACTACATGGCA 57.021 30.769 0.00 0.00 0.00 4.92
117 118 8.507249 GGACATCAAGAAATAATACTACATGGC 58.493 37.037 0.00 0.00 0.00 4.40
118 119 9.559732 TGGACATCAAGAAATAATACTACATGG 57.440 33.333 0.00 0.00 0.00 3.66
185 186 7.627726 GCGTAAAGGTTTTTAAGGCATATCACT 60.628 37.037 0.00 0.00 33.78 3.41
186 187 6.471198 GCGTAAAGGTTTTTAAGGCATATCAC 59.529 38.462 0.00 0.00 33.78 3.06
190 191 5.961396 TGCGTAAAGGTTTTTAAGGCATA 57.039 34.783 0.00 0.00 36.43 3.14
191 192 4.857509 TGCGTAAAGGTTTTTAAGGCAT 57.142 36.364 0.00 0.00 36.43 4.40
192 193 4.551388 CATGCGTAAAGGTTTTTAAGGCA 58.449 39.130 8.49 8.49 41.08 4.75
193 194 3.366724 GCATGCGTAAAGGTTTTTAAGGC 59.633 43.478 0.00 0.00 33.99 4.35
194 195 3.924073 GGCATGCGTAAAGGTTTTTAAGG 59.076 43.478 12.44 0.00 31.49 2.69
195 196 4.384547 GTGGCATGCGTAAAGGTTTTTAAG 59.615 41.667 12.44 0.00 33.22 1.85
196 197 4.202121 TGTGGCATGCGTAAAGGTTTTTAA 60.202 37.500 12.44 0.00 30.92 1.52
197 198 3.318275 TGTGGCATGCGTAAAGGTTTTTA 59.682 39.130 12.44 0.00 0.00 1.52
198 199 2.101582 TGTGGCATGCGTAAAGGTTTTT 59.898 40.909 12.44 0.00 0.00 1.94
199 200 1.683917 TGTGGCATGCGTAAAGGTTTT 59.316 42.857 12.44 0.00 0.00 2.43
200 201 1.323412 TGTGGCATGCGTAAAGGTTT 58.677 45.000 12.44 0.00 0.00 3.27
201 202 1.323412 TTGTGGCATGCGTAAAGGTT 58.677 45.000 12.44 0.00 0.00 3.50
203 204 1.202114 ACATTGTGGCATGCGTAAAGG 59.798 47.619 12.44 9.54 0.00 3.11
204 205 2.634982 ACATTGTGGCATGCGTAAAG 57.365 45.000 12.44 6.28 0.00 1.85
205 206 4.230657 GTTAACATTGTGGCATGCGTAAA 58.769 39.130 12.44 5.81 0.00 2.01
207 208 2.814336 TGTTAACATTGTGGCATGCGTA 59.186 40.909 12.44 0.00 0.00 4.42
209 210 1.984990 GTGTTAACATTGTGGCATGCG 59.015 47.619 12.26 0.00 0.00 4.73
210 211 1.984990 CGTGTTAACATTGTGGCATGC 59.015 47.619 12.26 9.90 0.00 4.06
211 212 3.058293 ACTCGTGTTAACATTGTGGCATG 60.058 43.478 12.26 0.00 0.00 4.06
212 213 3.146066 ACTCGTGTTAACATTGTGGCAT 58.854 40.909 12.26 0.00 0.00 4.40
214 215 3.619233 AACTCGTGTTAACATTGTGGC 57.381 42.857 12.26 0.00 34.15 5.01
215 216 4.533222 GGAAACTCGTGTTAACATTGTGG 58.467 43.478 12.26 7.91 34.96 4.17
217 218 4.457466 AGGGAAACTCGTGTTAACATTGT 58.543 39.130 12.26 8.24 34.96 2.71
218 219 5.030874 GAGGGAAACTCGTGTTAACATTG 57.969 43.478 12.26 7.96 36.29 2.82
230 231 8.751302 TTATTTTATTTTTGCGAGGGAAACTC 57.249 30.769 0.00 0.00 43.02 3.01
231 232 9.549078 TTTTATTTTATTTTTGCGAGGGAAACT 57.451 25.926 0.00 0.00 0.00 2.66
234 235 9.495572 ACATTTTATTTTATTTTTGCGAGGGAA 57.504 25.926 0.00 0.00 0.00 3.97
235 236 9.495572 AACATTTTATTTTATTTTTGCGAGGGA 57.504 25.926 0.00 0.00 0.00 4.20
281 282 2.977169 GCGCTAACTTGATTCGCAAAAA 59.023 40.909 0.00 0.00 44.50 1.94
282 283 2.580589 GCGCTAACTTGATTCGCAAAA 58.419 42.857 0.00 0.00 44.50 2.44
283 284 2.241259 GCGCTAACTTGATTCGCAAA 57.759 45.000 0.00 0.00 44.50 3.68
284 285 3.967734 GCGCTAACTTGATTCGCAA 57.032 47.368 0.00 0.00 44.50 4.85
286 287 1.281899 AGAGCGCTAACTTGATTCGC 58.718 50.000 11.50 0.00 45.34 4.70
287 288 2.282820 GGAAGAGCGCTAACTTGATTCG 59.717 50.000 11.50 0.00 0.00 3.34
288 289 3.526534 AGGAAGAGCGCTAACTTGATTC 58.473 45.455 11.50 6.27 0.00 2.52
289 290 3.618690 AGGAAGAGCGCTAACTTGATT 57.381 42.857 11.50 0.00 0.00 2.57
290 291 4.100189 ACATAGGAAGAGCGCTAACTTGAT 59.900 41.667 11.50 3.85 0.00 2.57
291 292 3.447586 ACATAGGAAGAGCGCTAACTTGA 59.552 43.478 11.50 0.00 0.00 3.02
292 293 3.553511 CACATAGGAAGAGCGCTAACTTG 59.446 47.826 11.50 4.72 0.00 3.16
293 294 3.430929 CCACATAGGAAGAGCGCTAACTT 60.431 47.826 11.50 11.11 41.22 2.66
294 295 2.101582 CCACATAGGAAGAGCGCTAACT 59.898 50.000 11.50 8.96 41.22 2.24
317 318 9.465985 GAACCGTTCAAACCTGAATTAAAATTA 57.534 29.630 6.38 0.00 43.39 1.40
323 324 5.369833 TGAGAACCGTTCAAACCTGAATTA 58.630 37.500 13.69 0.00 43.39 1.40
325 326 3.815809 TGAGAACCGTTCAAACCTGAAT 58.184 40.909 13.69 0.00 43.39 2.57
326 327 3.269538 TGAGAACCGTTCAAACCTGAA 57.730 42.857 13.69 0.00 39.30 3.02
327 328 2.992124 TGAGAACCGTTCAAACCTGA 57.008 45.000 13.69 0.00 0.00 3.86
328 329 3.058224 GGAATGAGAACCGTTCAAACCTG 60.058 47.826 13.69 0.00 41.48 4.00
329 330 3.146847 GGAATGAGAACCGTTCAAACCT 58.853 45.455 13.69 0.00 41.48 3.50
330 331 2.882137 TGGAATGAGAACCGTTCAAACC 59.118 45.455 13.69 9.25 41.48 3.27
332 333 5.782893 AATTGGAATGAGAACCGTTCAAA 57.217 34.783 13.69 1.51 41.48 2.69
333 334 5.782893 AAATTGGAATGAGAACCGTTCAA 57.217 34.783 13.69 1.87 41.48 2.69
335 336 8.757164 AATTAAAATTGGAATGAGAACCGTTC 57.243 30.769 2.81 2.81 39.50 3.95
360 361 7.148323 CGGGTTCATGAACACAAACTTGATATA 60.148 37.037 33.85 0.00 44.66 0.86
361 362 6.349280 CGGGTTCATGAACACAAACTTGATAT 60.349 38.462 33.85 0.00 44.66 1.63
362 363 5.049060 CGGGTTCATGAACACAAACTTGATA 60.049 40.000 33.85 0.00 44.66 2.15
364 365 3.066064 CGGGTTCATGAACACAAACTTGA 59.934 43.478 33.85 0.00 44.66 3.02
365 366 3.066064 TCGGGTTCATGAACACAAACTTG 59.934 43.478 33.85 19.77 44.66 3.16
366 367 3.283751 TCGGGTTCATGAACACAAACTT 58.716 40.909 33.85 0.00 44.66 2.66
367 368 2.925724 TCGGGTTCATGAACACAAACT 58.074 42.857 33.85 0.00 44.66 2.66
368 369 3.066203 ACTTCGGGTTCATGAACACAAAC 59.934 43.478 33.85 19.16 44.66 2.93
370 371 2.616376 CACTTCGGGTTCATGAACACAA 59.384 45.455 33.85 25.32 44.66 3.33
371 372 2.217750 CACTTCGGGTTCATGAACACA 58.782 47.619 33.85 21.06 44.66 3.72
372 373 2.218603 ACACTTCGGGTTCATGAACAC 58.781 47.619 33.42 30.71 42.85 3.32
374 375 3.982576 AAACACTTCGGGTTCATGAAC 57.017 42.857 27.16 27.16 40.45 3.18
375 376 7.931578 ATATTAAACACTTCGGGTTCATGAA 57.068 32.000 3.38 3.38 0.00 2.57
377 378 7.497909 ACCTATATTAAACACTTCGGGTTCATG 59.502 37.037 0.00 0.00 0.00 3.07
378 379 7.571025 ACCTATATTAAACACTTCGGGTTCAT 58.429 34.615 0.00 0.00 0.00 2.57
380 381 8.947055 TTACCTATATTAAACACTTCGGGTTC 57.053 34.615 0.00 0.00 0.00 3.62
381 382 9.333724 CATTACCTATATTAAACACTTCGGGTT 57.666 33.333 0.00 0.00 0.00 4.11
382 383 8.488668 ACATTACCTATATTAAACACTTCGGGT 58.511 33.333 0.00 0.00 0.00 5.28
384 385 9.537192 TGACATTACCTATATTAAACACTTCGG 57.463 33.333 0.00 0.00 0.00 4.30
398 399 9.393786 ACCAGGATTAGTAATGACATTACCTAT 57.606 33.333 27.24 21.56 44.77 2.57
400 401 7.691993 ACCAGGATTAGTAATGACATTACCT 57.308 36.000 27.24 17.63 44.77 3.08
402 403 9.654663 GGATACCAGGATTAGTAATGACATTAC 57.345 37.037 24.78 24.78 44.18 1.89
405 406 6.070767 CCGGATACCAGGATTAGTAATGACAT 60.071 42.308 0.00 0.00 0.00 3.06
406 407 5.245301 CCGGATACCAGGATTAGTAATGACA 59.755 44.000 0.00 0.00 0.00 3.58
407 408 5.337330 CCCGGATACCAGGATTAGTAATGAC 60.337 48.000 0.73 0.00 0.00 3.06
408 409 4.775780 CCCGGATACCAGGATTAGTAATGA 59.224 45.833 0.73 0.00 0.00 2.57
409 410 4.775780 TCCCGGATACCAGGATTAGTAATG 59.224 45.833 0.73 0.00 30.79 1.90
410 411 5.019657 TCCCGGATACCAGGATTAGTAAT 57.980 43.478 0.73 0.00 30.79 1.89
412 413 4.154942 GTTCCCGGATACCAGGATTAGTA 58.845 47.826 0.73 0.00 35.57 1.82
413 414 2.970640 GTTCCCGGATACCAGGATTAGT 59.029 50.000 0.73 0.00 35.57 2.24
414 415 2.969950 TGTTCCCGGATACCAGGATTAG 59.030 50.000 0.73 0.00 35.57 1.73
415 416 3.049108 TGTTCCCGGATACCAGGATTA 57.951 47.619 0.73 0.00 35.57 1.75
416 417 1.887797 TGTTCCCGGATACCAGGATT 58.112 50.000 0.73 0.00 35.57 3.01
418 419 1.279846 GTTTGTTCCCGGATACCAGGA 59.720 52.381 0.73 0.00 33.84 3.86
419 420 1.280998 AGTTTGTTCCCGGATACCAGG 59.719 52.381 0.73 0.00 0.00 4.45
420 421 2.781681 AGTTTGTTCCCGGATACCAG 57.218 50.000 0.73 0.00 0.00 4.00
421 422 4.286549 TCTTTAGTTTGTTCCCGGATACCA 59.713 41.667 0.73 0.00 0.00 3.25
423 424 5.727434 TCTCTTTAGTTTGTTCCCGGATAC 58.273 41.667 0.73 0.00 0.00 2.24
424 425 5.718130 TCTCTCTTTAGTTTGTTCCCGGATA 59.282 40.000 0.73 0.00 0.00 2.59
426 427 3.899360 TCTCTCTTTAGTTTGTTCCCGGA 59.101 43.478 0.73 0.00 0.00 5.14
427 428 4.267349 TCTCTCTTTAGTTTGTTCCCGG 57.733 45.455 0.00 0.00 0.00 5.73
428 429 5.725362 AGATCTCTCTTTAGTTTGTTCCCG 58.275 41.667 0.00 0.00 0.00 5.14
429 430 7.762159 CACTAGATCTCTCTTTAGTTTGTTCCC 59.238 40.741 0.00 0.00 32.66 3.97
440 469 6.603940 AGTTCAAGCACTAGATCTCTCTTT 57.396 37.500 0.00 0.00 32.66 2.52
441 470 7.116075 TCTAGTTCAAGCACTAGATCTCTCTT 58.884 38.462 0.00 0.00 46.90 2.85
442 471 6.658849 TCTAGTTCAAGCACTAGATCTCTCT 58.341 40.000 0.00 0.00 46.90 3.10
452 851 9.944376 TTTATAATGACTTCTAGTTCAAGCACT 57.056 29.630 0.00 0.00 0.00 4.40
511 911 3.597675 TATGTCCCGCTGCAACGCA 62.598 57.895 3.43 0.00 36.92 5.24
512 912 1.917782 TTTATGTCCCGCTGCAACGC 61.918 55.000 3.43 0.00 0.00 4.84
513 913 0.732571 ATTTATGTCCCGCTGCAACG 59.267 50.000 1.65 1.65 0.00 4.10
520 920 8.773404 AACATAGTAGAATATTTATGTCCCGC 57.227 34.615 9.78 0.00 34.93 6.13
569 992 7.174772 GGCCAAAGGTGTTTATCAAATCAAATT 59.825 33.333 0.00 0.00 0.00 1.82
570 993 6.654582 GGCCAAAGGTGTTTATCAAATCAAAT 59.345 34.615 0.00 0.00 0.00 2.32
637 1060 3.389925 TTAACCGGCTATATTGTCCCG 57.610 47.619 0.00 0.00 40.39 5.14
665 1088 1.210967 TCCTCCGGTCTGTGTGTTTTT 59.789 47.619 0.00 0.00 0.00 1.94
666 1089 0.834612 TCCTCCGGTCTGTGTGTTTT 59.165 50.000 0.00 0.00 0.00 2.43
670 1093 1.270839 ACAATTCCTCCGGTCTGTGTG 60.271 52.381 0.00 0.00 0.00 3.82
674 1097 3.195825 AGTCTAACAATTCCTCCGGTCTG 59.804 47.826 0.00 0.00 0.00 3.51
736 1159 1.448540 GTCCCACGTGCAGAGATGG 60.449 63.158 10.91 4.04 0.00 3.51
738 1161 0.615331 ATTGTCCCACGTGCAGAGAT 59.385 50.000 10.91 3.76 0.00 2.75
739 1162 0.396435 AATTGTCCCACGTGCAGAGA 59.604 50.000 10.91 4.72 0.00 3.10
740 1163 2.093306 TAATTGTCCCACGTGCAGAG 57.907 50.000 10.91 0.00 0.00 3.35
765 1196 3.721706 GTCACCCCCTCCCTGCAG 61.722 72.222 6.78 6.78 0.00 4.41
771 1202 4.097361 GAAGGCGTCACCCCCTCC 62.097 72.222 0.00 0.00 40.58 4.30
914 1357 1.215673 TGGTTTTGTAGCCACCAAGGA 59.784 47.619 0.00 0.00 37.66 3.36
965 1419 1.417288 GCTCTGGGCTCTGGATGGAT 61.417 60.000 0.00 0.00 38.06 3.41
966 1420 2.068821 GCTCTGGGCTCTGGATGGA 61.069 63.158 0.00 0.00 38.06 3.41
967 1421 2.509916 GCTCTGGGCTCTGGATGG 59.490 66.667 0.00 0.00 38.06 3.51
968 1422 2.326773 CTGGCTCTGGGCTCTGGATG 62.327 65.000 0.00 0.00 41.46 3.51
969 1423 2.041762 TGGCTCTGGGCTCTGGAT 59.958 61.111 0.00 0.00 41.46 3.41
970 1424 2.686470 CTGGCTCTGGGCTCTGGA 60.686 66.667 0.00 0.00 41.46 3.86
971 1425 2.686470 TCTGGCTCTGGGCTCTGG 60.686 66.667 0.00 0.00 41.46 3.86
972 1426 2.733669 CCTCTGGCTCTGGGCTCTG 61.734 68.421 0.00 0.00 41.46 3.35
973 1427 2.365370 CCTCTGGCTCTGGGCTCT 60.365 66.667 0.00 0.00 41.46 4.09
974 1428 4.173924 GCCTCTGGCTCTGGGCTC 62.174 72.222 0.00 0.00 46.69 4.70
1092 1572 2.442272 TACCTCGCCTCCCAGCTC 60.442 66.667 0.00 0.00 0.00 4.09
1093 1573 2.760385 GTACCTCGCCTCCCAGCT 60.760 66.667 0.00 0.00 0.00 4.24
1094 1574 3.851128 GGTACCTCGCCTCCCAGC 61.851 72.222 4.06 0.00 0.00 4.85
1095 1575 3.528370 CGGTACCTCGCCTCCCAG 61.528 72.222 10.90 0.00 0.00 4.45
1161 1641 2.933287 ATGAACTCCCCGCACCCA 60.933 61.111 0.00 0.00 0.00 4.51
1164 1644 3.134127 GGCATGAACTCCCCGCAC 61.134 66.667 0.00 0.00 0.00 5.34
1410 1902 1.674322 GCTGGGTGTGCGTTGGTAT 60.674 57.895 0.00 0.00 0.00 2.73
1526 2018 4.409218 TCGTCCGGAACCGCTTCG 62.409 66.667 5.23 3.37 38.24 3.79
1554 2046 2.071262 CATCTGCCCCCTCTGCTCT 61.071 63.158 0.00 0.00 0.00 4.09
1717 2209 2.669569 CTGTTGGGACTGTGGCGG 60.670 66.667 0.00 0.00 0.00 6.13
1833 2347 5.311121 TCACTTCAGTCCCCCTGTTTAATTA 59.689 40.000 0.00 0.00 42.19 1.40
1846 2360 1.795286 CGCTTCACTTCACTTCAGTCC 59.205 52.381 0.00 0.00 0.00 3.85
1849 2363 2.064762 CCTCGCTTCACTTCACTTCAG 58.935 52.381 0.00 0.00 0.00 3.02
1864 2378 0.601057 GATTAGAGAGAGCCCCTCGC 59.399 60.000 0.24 0.24 46.49 5.03
1866 2380 3.571590 TGAAGATTAGAGAGAGCCCCTC 58.428 50.000 0.00 0.00 42.28 4.30
1901 2415 8.352942 ACCATGATCAAGAACAAGAAGTAAAAC 58.647 33.333 0.00 0.00 0.00 2.43
1972 2493 4.823989 CCCTCATCATCCCAATTAACTGAC 59.176 45.833 0.00 0.00 0.00 3.51
2003 2544 1.331680 GGACAAATGTACGTATGCGCG 60.332 52.381 0.00 0.00 42.83 6.86
2005 2546 5.900339 ATAAGGACAAATGTACGTATGCG 57.100 39.130 0.19 0.19 44.93 4.73
2034 2575 4.876107 AGAGGCCAAATCAAATACGTACAG 59.124 41.667 5.01 0.00 0.00 2.74
2036 2577 4.873827 TCAGAGGCCAAATCAAATACGTAC 59.126 41.667 5.01 0.00 0.00 3.67
2037 2578 5.092554 TCAGAGGCCAAATCAAATACGTA 57.907 39.130 5.01 0.00 0.00 3.57
2039 2580 4.155826 TGTTCAGAGGCCAAATCAAATACG 59.844 41.667 5.01 0.00 0.00 3.06
2040 2581 5.643379 TGTTCAGAGGCCAAATCAAATAC 57.357 39.130 5.01 0.00 0.00 1.89
2058 2599 5.385617 CGTGGTCAATTGATCTTCTTGTTC 58.614 41.667 19.21 0.00 0.00 3.18
2284 2834 1.860676 TGCTCGTACCAGTTGTTCAC 58.139 50.000 0.00 0.00 0.00 3.18
2285 2835 2.036604 TCATGCTCGTACCAGTTGTTCA 59.963 45.455 0.00 0.00 0.00 3.18
2300 2860 6.127281 TGGCTGATGTTAAATCAATTCATGCT 60.127 34.615 0.00 0.00 0.00 3.79
2321 2882 5.190925 TGTTCCCAGTAAGTACATTATGGCT 59.809 40.000 0.00 0.00 0.00 4.75
2326 2887 8.029782 AGCATATGTTCCCAGTAAGTACATTA 57.970 34.615 4.29 0.00 32.23 1.90
2356 2930 5.794687 TTGGTGCTGATAATTAAGTCACG 57.205 39.130 0.00 0.00 0.00 4.35
2379 2953 6.262049 TGTGTTCTTGATGCAGCTAAGTTTAA 59.738 34.615 2.53 0.00 0.00 1.52
2430 3004 4.011023 ACCGAATGGAGGATAGATAGACG 58.989 47.826 0.00 0.00 39.21 4.18
2432 3006 4.220821 GCAACCGAATGGAGGATAGATAGA 59.779 45.833 0.00 0.00 39.21 1.98
2433 3007 4.221703 AGCAACCGAATGGAGGATAGATAG 59.778 45.833 0.00 0.00 39.21 2.08
2468 3052 3.393800 TCTCTTCTTCGGCAAAGTCTTG 58.606 45.455 0.00 0.00 36.31 3.02
2498 3086 9.838339 CTCAACTTTCCTGGTAATAATCTGTAT 57.162 33.333 0.00 0.00 0.00 2.29
2513 3106 1.349357 GGGCTCACTCTCAACTTTCCT 59.651 52.381 0.00 0.00 0.00 3.36
2522 3115 3.536570 GTTTGGATAAGGGCTCACTCTC 58.463 50.000 0.00 0.00 0.00 3.20
2594 3329 4.487714 TGTATCCTCTTCTTCGGCAAAT 57.512 40.909 0.00 0.00 0.00 2.32
2730 3467 2.679059 CGCTGACAGGTTCATCATCCTT 60.679 50.000 4.26 0.00 32.17 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.