>input_sequence_69782
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------------------------ATGGAGTTCACGGGGCCGGAGCACGCCGCCGGGACGCCGCCCGGCACGCGCGCGCC
CTCCGACGCCTCCTCGGGGAACA---------------GCGGGGCGGCCGGGAGCTGGGAGGCGAGGTACCGCGAGTGCC
TGCGCAACCACGCGGCCGCGCAGGGCGGGCACGCCGTGGATGGGTGCGGGGAGTTCATGCCCTCCGGCGCCCACGACCTC
CTCAGGTGCGCCGCCTGCGGGTGCCACCGCAGCTTCCACCGCAGGGACGACGGGCAG------CAGCACCCCCGCCTCTT
CCTCCCCGCGCCCGCCGCCACGCCGACGACGGCT---CCGCGCGTGCCGCTGCTCATGCC---GCCTCCGCAGCACCACC
ACCCCTACGCGGCCGGCCACCCGCTCGCGCCGCCGTTCGCGTACAACCCCCACCACCACCAATACCAACGCACACCCAGC
GGCGGTGGCACGACGACCGAGTCGTCCAGCGAGGAGCCCGGCCCGGGCCCGCCCTCGACGTCGGCTCCAGGGCAGGGGCA
CGGGCAGGCGCGGCGGCCGAAGCGGTTCCGGACGAGGTTCACGGCAGAGCAGAGGGGGCAGATGCTGGCGCTGGCGGAGC
GGGTGGGGTGGCGGATGCTGAAACAAGACGAGGCCCTGGTGGAGCAGCTCTGCGCGCAGGCTGGCGTCCGGCGGCAGGTC
TTCAAGGTCTGGATGCACAACAACAAGCACCACAGGAGGCAGCCGCAGCCGCCACAGTCCCAACAGCAGCAACAACAACG
GTAG----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G426300
CGTTTCTTTGAGAAAGAAGTTTTCGAAGATTAAAGTGTGTAGTAGGATGGATGGAATTGTTTGGTTTGGTTTGTCTTGGT
GATCACGTTTGATGATGAAGCACCTCTCTCCCTTTTTGCCATGTAGTATTATTTCTTGATGTCCATTTAGGGAAGTTGAA
GATCTAGTGTTTTTAGTGTTGTGTTAGTGATATGCCTTAAAAACCTTTACGCATGCCACAATGTTAACACGAGTTTCCCT
CGCAAAAATAAAATAAAATGTTAACATGAGTTAGCATTTTTTTTTTGCGAATCAAGTTAGCGCTCTTCCTATGTGGCTAA
TTTTAATTCAGGTTTGAACGGTTCTCATTCCAATTTTAATTATATCAAGTTTGTGTTCATGAACCCGAAGTGTTTAATAT
AGGTAATGTCATTACTAATCCTGGTATCCG----------------------------GGAACAAACTAAA---------
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-----------------------------------------GAGAGATCTAGTGCTTGAACTAGAAGTCATTATAAAAAT
AT-TTTTTATTAGCACTAGATAATCATCTGTGCGTTGCAGCGGGACATAAATATTCTACTATGTTAATTTATG-------
----------------ATTTATCGAAAACTTAATTTGATTTGATAAACACCTTTGGCCTTTTTTTCCAAAGAAAAGTATA
ATTTTAGTTCAATAAAAGGCGGGACAATATAGCCGGTTAATAAATGAAAAAACACACAGACCGGAGGAATTGTTAGACTT
TTTTTTTTACCAGATGTTGCACATGCTCGTAGTAACCCCCATC--------TCTGCACGTGGGACAATTAAAGGGCTGCA
GGGAGGGGGTGACGCCTTCCCCTGCCGTGCCGCTGTCGGTCGCTCGTCGCTCCACCACCACCACGCAT------------
CGCCGGCCCTGTAGGAGACAAAAGTGCCATTTCAGAACCAGTGTCTCCCCTGCTGAAGCCCATCTCTCGCTCTCGCTCCT
TGGTG----------GCTACAAAACCACAAGAGGCCAAGCGCCTGCGC-GCTAGCTGCATCCATCCAGAGCCCAGAG---
--------CCAGAGGCATGCGGTGATGGAGTTCACGGGGCCGGAGCACGCCGCCGGGACGCCGCCCGGCACGCGCGCGCC
CTCCGACGCCTCCTCGGGGAACA---------------GCGGGGCGGCCGGGAGCTGGGAGGCGAGGTACCGCGAGTGCC
TGCGCAACCACGCGGCCGCGCAGGGCGGGCACGCCGTGGATGGGTGCGGGGAGTTCATGCCCTCCGGCGCCCACGACCTC
CTCAGGTGCGCCGCCTGCGGGTGCCACCGCAGCTTCCACCGCAGGGACGACGGGCAG------CAGCACCCCCGCCTCTT
CCTCCCCGCGCCCGCCGCCACGCCGACGACGGCT---CCGCGCGTGCCGCTGCTCATGCC---GCCTCCGCAGCACCACC
ACCCCTACGCGGCCGGCCACCCGCTCGCGCCGCCGTTCGCGTACAACCCCCACCACCACCAATACCAACGCACACCCAGC
GGCGGTGGCACGACGACCGAGTCGTCCAGCGAGGAGCCCGGCCCGGGCCCGCCCTCGACGTCGGCTCCAGGGCAGGGGCA
CGGGCAGGCGCGGCGGCCGAAGCGGTTCCGGACGAGGTTCACGGCAGAGCAGAGGGGGCAGATGCTGGCGCTGGCGGAGC
GGGTGGGGTGGCGGATGCTGAAACAAGACGAGGCCCTGGTGGAGCAGCTCTGCGCGCAGGCTGGCGTCCGGCGGCAGGTC
TTCAAGGTCTGGATGCACAACAACAAGCACCACAGGAGGCAGCCGCAGCCGCCACAGTCCCAACAGCAGCAACAACAACG
GTAGGGTGCCCGTA----------------------GCCATGGGAGGGGACAAGCTCACGAATCCCCACATCATTATTTT
TGTACTTCCGACAGGGGAAGAGGGATTAATTAAACAGGGGGACTGAAGTGAAGTGAAGCGAGGGGCTCTCTCTAATCTTC
ATCATTGTCTCCTAGTTTTACTTCTTGTTCTTGATCATGGTTCATGATCC-TTGCTTGGTTTAA------TCCTTTTGTT
TCTAGTTGATGCGTCAGTTAATTGGGATGA--------------------TGAGGGCACTCAACGCGCATACGTACATTT
GTCCTTATTTTCTACTGTACGTATTTGATTTGGCCTCTGA--ACAAGAAGATCAATTGACCACGGCAATTTCCTTCATGC
CATCTTGCTCAAGACTAGATCTTTCATCTTCACTTGATCGATCG-------GTGGTGCTGTTATTTCTCGCTGTTCTTTC
AAATGCAGAATCATCGATCATGTGGTTGGAGCTTAAAAAACCAGCACCGAATTATTTATCAGAGATTCAACGAGACAGTG
ATAAGACAAATCATGGACCTTTCTTGCTGACAAGT---GAACAACTGG-------TACGAGCATGAATTGA-TTTAACAT
CAGCCATAATGTACTTAC-------------TGGGAACATATGCTTGAACGTGACTTAATTATCAGCACCAATTAAACTT
AGCTGCATCAAGAACACATGCAGGAGTACTGTTCATCCGTGTGCGTC--------TATCTATCCTCCATTCGGTTGCTGT
GCATTGT--TGC----AAGACTTTGCCGAAGAAGAGAAAAAAAAAATACAG-----ATTATTACCAGGAAAGTTGAGAGT
GAGCCCTTATCCAAACCAGATCCCTTAA----------------------------------------------------
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----------TTGGGCATGCATGCCGGTCAGTCACTCACATGGCCTATATTTGCCGAAGAAGAGGATACAAGGATTTCGC
TTCATGGAACACAACTGCGAG-GCCGGCCCATGCTGCCTGCAACTAACTGCAAGGGATGGGGG-GATACAGCGGATAAGG
ACGCAGTAATGAGTACCCATCCAAGGAAGGATGATGAACCTGTCAGCGT
>chr1A_123
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------------------------------------------GTAGTATTATTTCTTGATGTCCATTTAGGGAAGTTGAA
AATCTATTGTTTTTAGTGTTGTGTTCATGAACCCGAAATGTCATGCTAATAGTTTTCGAAT-------------------
-------------------------------------------------------GTTAGCGCTCTTCCTATGTGGCCAA
TTTCATGGTGAGCATTTTTAAAGTGGGCAAAGTCTATGCTGCGAGTTTTTGAATCCTGTTTGTCTTTGTTTTTGTGCTCT
TGCTAGCTGTGTACTATAGATCGTAAATACAAATTCTGTTTTGGTCAAAGATTCATATGGAACAAACTTGCACACTGTCT
TAAATCCTTAAACACGTGGACCATGGCTCCGCCTGGATGGTTAAGAGGTGCCAAAGCCTTCCCACCCGCCCGAGTTCGAG
CGCCAGTGCTCGCATTCTCAGTTGTGTACACGCATTTCTTCTTAATGGAATGTTGTGGGATTGTCTAACCCACGATCAAG
ACGCCGCACCGAAAACCAATAGAAACCAACGCTTCTGCTCCTCGCAACGTCCACACTCATGCTTGTAGTGAGGCTCCTCG
CACAGTCACACTCGCGATGCTGCTCGCCATGCGCCACCTCACATTTACCGCTCTTTTGTTGTCGGTTTTTGCTCGTACCG
GCAATGTTCGTAACAATTTGTTTGACACCCAATCAACCATCGAGAGATCCGGTGCTTGAATTAGAATTGATTATAATAAT
ATATTTTTATCAACACTAGATAATCACCGTGT-GTTGCAACGGGACATAAATATTCTACTATGTTAATTTATGATTACCT
GCTTGCATTAATATGTATTTATCCAAAACTTGGTTTGATTTGATAAACACACCTTTGGC----TTTCAAAGAAAAATATA
ATTTTAGTTCAATAAAAGGTGGGGCAGTTGAGCCGGTTAAATG------AAAAACAGAGACCGGAGGAATTGTTAGAC--
TTTTTTTTACCAAGTGTTGCACATGCTCGTAGTAACCCGCTGTTTTTTTCTTCTGCACGTGGGACAATTAAAGGATGGGG
GCCTG------------------GCCCTGCCACTGTCCGCCGCTCGTTGCTCCACCACCGCG---CACCTCCGTCCATCC
CGCCGGCCCTCTAGGAGACAGAAGTGCCATTTCAGAACCAGTGTTCCCCCTGCTGAAGCCCATCTCTCTCTCCCATCTCT
CGCTCTAGCACCCTTGCTACAAAACCACAAGAGGCCAACCACCTGCGCCGCTAGCTGC-----------------AG---
--------CCAGAGGCATGCGGTGATGGAGTTCACGGGGCCGGAGCACGCCGCCGGGACGCCCCCCGGGACGCGCTCGCC
CTCCGACGCCTCCTCGGGGAACA---------------GCGGC---------------GAGGCGAGGTACCGCGAGTGCC
TGCGCAACCACGCCGCGGCGCAGGGCGGGCACGCCGTGGACGGCTGCGGGGAGTTCATGCCCTCCAGCGCCCACGACCTG
CTCAGGTGCGCCGCCTGCGGGTGCCATCGCAGCTTCCACCGCAGGGACGACGGGCAGCAGCAGCAGCACCCCCGCCTCTT
CCTCCCTGCGCCCGGCGCCACGTCGACGACGCCGACGCCGCGCGTGCCGCTGCTCATGCCACCGCCGCAGCAGCATCACC
ACCCCTACGCGGCCGGTCACCCACAGGCGCCGCCGTTCGCGTACAACCCCCACCACCAGCACTACCAACGCACACCCAGC
GGCGGTGGCACGACGACCGAGTCGTCCAGCGAGGAGCCCGACCCGGGACCGCCCTCGACGTCGGCTCCAGGGCAGGGGCA
CGGGCAGGCGCAGCGGCGGAAGCGGTTCCGGACGAGGTTCACGGCGGAGCAGAGGGAGCAGATGCTGGCGCTGGCAGAGC
GGGTGGGGTGGCGGATGCTGAAACAAGACGAGGCCCTGGTGGAGCAGCTGTGCGCGCAGGCCGGCGTGCGGCGGCAGGTC
TTCAAGGTCTGGATGCACAACAACAAGCACCACAGGAGGCAGCCAG---------AGTCCCAACAGCAGCAACAAAAACA
GTAGGGTGCCCGTA----------------------GCCATGGGAGGGGACAGGCTCACGAATCCCCACATCATTATTTT
TGTACTTCCGACAGGGGAAGAGGGATGAATTAAACAGGGAGAGTGAAGTGAAGTGAAACCAGGGGCTCTCTCTGATCTTC
ATCA-TGTCTCCTAATCTTACTTCCTGTTCTTGATCATGGTTCATGATCCTTTGCTTGGTTTAACTGGATTCCTTTTGTT
TCTAGTTGATGCATCAGTTAATTGGGATGACGATTGCTCGATGATGATAATGAGGGTACTCAGAGTCTATACTTACGTTT
TATCTGAATTTCTATTCGAAATCTCT---------------CACAAGAAGATCAGTTGCCCACGGCAATTTCCTTCATGC
CATATTGCTCAAGACTAGATCTTTCATCTTCACTTGATCGATCGGTGTTTGGTGGTGCTGCTATTTCTCGCTGTTCTTTC
AAATACAGAATCATCGATCATGTTGTTGGAGCTT-AAAAACCAGCACCGAATTATTTATCAGACATTCAACGAGACAGTG
ATAAGACAAATCATGGAGCTTTCTTGCTGACAACAAGAGAACAACTGG-------TACGGGCATGAATCGA-TTTAACAC
CGGCCAGAATGTACTTAC-------------TGGGAACATATGCTTGAATGTGACTTGATTATCAGCACCAACTAAACCT
GGCTGCATCAAGAACACATGCAGGAGTACCGTTCATCCGTGTGTG--------TTTATCTATCCTCCATTCGGTTGCTGT
GCATTGT--TGTACGTAAGATTTTGCCAAAGAAGAGAAAAAAAA--TACAG-----ATTACTACCGGGAAAAAATACAAG
TTGCCCTTATCCAAACCAGATCCCTTAA----------------------------------------------------
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----------TTGGGCATGCATGCCGGTCAGTCACTCACATTGCCTATGTTTGCCGAAGAAGATGATGCAAGGATTTCGC
TTCATGGAACACAACTGCGAG-GCCGGCCCATGCTGCCTGCAACTAACTGCAAGGGATGGGGATGATACAGCGGATAAGG
ACGCAGTAATGAGTACCCATCCAAGGGAGGATGATGAACCTGT------
>chr1B_763
GGGCTGGAGGGA--------------------------------------------------------------------
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--GAGGGGGTGACGCCTTCCCCTGCCGTGCCGGTGTCGGTCGCTCGCCGCTCCACCACCACCACACACCTCCGTCCATCC
CGCCGGCGCTGTAGGAGACAAAAGTGCCATTTCAGAACCAGTGTCTCCCCTGCTGAACCCCATCTCTCACTCTCGCCCCT
---TG----------GCTACAAAACCACAAGAGGCCAAGCGCCTGCGC-GCTAGCTGC-----------------ATCCA
CCCAGAGCCCAGAGGCATGCGGTGATGGAGTTCACGGGGCCGGAGCACGCCGCCGGGACGCCGCCCGGCACGCGCGCGCC
CTCCGAAGCCTCGTCGGGGAACAGCGGGGCGGCCGGGAGCGGC---------------GAGGCGAGGTACCGCGAGTGCC
TGCGCAACCACGCGGCCGCGCAGGGCGGGCACGCCGTGGACGGCTGCGGGGAGTTCATGCCCTCCGGCGCCCACGACCTG
CTCACGTGCGCCGCCTGCGGGTGCCACCGCAACTTCCACCGCAGGGACGACGGGCAG------AAGCACCCCCGCCTCTT
CCTTCCCGCGCCCGCCGCCACGCCGACGACGCCGACACCGCGCGTGCCGCTGCTCATGCC---GCCTCCGCCGCAGCACC
ACCCCTACGCGGCCGGCCACCCACACGCGCCGCCGTTCGCGTACAACCCCCACCATTACCACTACCAACGCACACCCAGC
GGCGGTGGCACGACGACCGAGTCGTCCAGCGAGGAGCCCAGCGCCGTCCCGCCCTCGACGTCGGGGCAGGGGCACGCGCA
CGGGCAGGCGCAGCGGCGGAAGCGGTTCCGGACGAGGTTCACGGCGGAGCAGAGGGAGCAGATGCTGGCGCTCGCGGAGC
GCCTGGGGTGGCGGATGCTGAAGCAGGACGAGGCCCTGGTGGGGCAGCTGTGCGCGCAGGCCGGCGTCCGGCGGCAGGTC
TTCAAGGTCTGGATGCACAACAACAAGCACCACAGGAGGCAGCCGCAGGCGCCACAGTCCCAACAGCAGCAGCAACAGCA
CCAGTAGCCATGGCAGGGGACAAGCGACTTGATCTGGCCATGGGAGGGGACAAGCTCAGGAATCCCCACATCATTATTTT
TGTACTTCCGACCGGGGAAGAGGGATCATATT----------GTGAAGTGAAGTGAAACCAGGGGCTCTCTCTGATCTTC
ATCATTGTCTCCTAATTTTACTTCTTAGTT-----------------------------TTTTACTGGATTTCTTTTGTT
TCTAGAGATAGATGATTGGTCGGTTATTGAGACCAAGAAGACGATGATGAG--GAGCACTCGGTGTGCGTGCTTACATTT
GTCCTTATTTTGTCA------TATTTGATTTGGCCTCTCAACACAACAAGATCAATTGACCACTCCAATTTCCTTCCTGC
CATCTTGCGCAAGCCTAGATCTTTCATCTT------------------------GTGCTGTAATTTCTCACTACTCCTTC
AAATGCAGAATCATCGATGTGG------------------------------------TCACAGATTCAACGAGACAGCA
ATATGACAGTTTATGTAGCTTTCTCGATGACAACAAGAGAACAATCAACAATGGATACGGGCATGAACTGACTTTAACAT
TGCTCACAATGTAGTAGTACGTACTGGGAGGTGGGAACATATGGTTGAATGTGGCTTAATTATCAGCATCAACTGAACTT
AGCTGCATCCACAACACATGCAGGAGTACTGTTCACCCGTGTGTGGTTATCACTTTATCTATCCTCCACTCAGTTGCAGG
TGCATTTTGTGT----AAGACTTTGTTGAAGAGAGAAAGAATGCATCACGTTCTGAATTATTACTGGGAAGGTTAAGAGT
GAGCCCTTATCCAAACCAGATCCCTTAAGGGCTTGTTCGGTTAATCCTCTCCCCAAGAGGATTGAAGGGGATTGACAAGG
ATTGGTTTGTATTTTGACTTACAAGAGATTTAAATCCCTCTCAAACCCCTTCAATCCACTTGGATTCGCACGCAACCGAA
CGAGGCCTAATTGGGCACGCATGCCGGTCAGTCACTCACATGCCCTATGTTTGCCGAAGAAGAGGATACA-----TTTGC
TTCATGGAATACAACTGCGAGGGCCGGCCCATGCTGCCTGCAACTAACTGCAAGGGATGGGGGC-ATACAGCGGATGAGG
ACGCAGTAATGAGTACCCATCCAAGGGAGGATG----------------
>SNPs
S-SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
S-----S------------------SS---SSSSSSSSSSSS-SSS-S-SSSS-SS-SS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S--
---S-SSSSSS-SS-SSSSSSSSSSSSSSSSSSS-S-SS-SSS-SSSSS-SSS-SS-SS-SSS-SSSSSS-S-S-SS-S-
S-S--SSSSSS-SSSSS-SSSS-SS-SSSS--------------------------------------SSS---------
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-------------------------------------------------SS---------S-----S-S-------S---
----------S-S-------------S-SSSSS------S----------------------------------------
-----------------------S-------SS-----------------SSS-SSSSSSSSS--S---------S----
-------------------S---S--S-SS----------SSSSSSSSS---S---S---------------------SS
------------SS------------------------S-SSS-------------------------------SSS-SS
-S--------------------------------------------------------------S--S------------
--------------------------------------------------------------------S-------S---
S-S-------------------------------------------------------SSSSSSSSSSSSSSSSS-----
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------------------------------------------SSSSSSSSSSSSSSSS----------------------
----------------------------------------S--S-----------------------------------S
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-------------------------------S-S-----------------------------------------S----
----------------------S-S------------------------------------S------------------
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-----------S-----S---------------------------S----------S-----------------------
-------------------------------------------------S-----------S------------------
------------------------------------------------S------------------------------S
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--------------------------S------------S--S--------------S-S-------------S------
--------------S-----------------------------------------------------------------
------------S-------------------------------------------------SS-S------S-------
--------------S-SS-SS-----------------S-----------------------------------------
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-----------------------S----------S---------------------------------------------
-----------------S---------------SS------------------------S--------------------
-S----S------------------------------------------S----------------------S-------
-------------------------------------------S-SS---------------------------------
-----------S---------------------------------S-------------------S--------S-----
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------------------------------------------------S-------------------------------
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--------------------------S----------------SSSSSS
>forward_1429
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-------------------------------------------------GCTAGCTGCATCCATCCAGA-----------
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>reverse_2378
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---------------------------------------------------------GCGAGGGGCTCTCTCTAATC---
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