Multiple sequence alignment - TraesCS1D01G401600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G401600 chr1D 100.000 2252 0 0 1 2252 467500594 467502845 0.000000e+00 4122.0
1 TraesCS1D01G401600 chr1D 91.247 754 50 6 1423 2160 369899929 369900682 0.000000e+00 1013.0
2 TraesCS1D01G401600 chr1D 91.452 737 50 3 1426 2161 481924973 481925697 0.000000e+00 1000.0
3 TraesCS1D01G401600 chr1D 86.434 774 66 7 1426 2161 451194180 451193408 0.000000e+00 811.0
4 TraesCS1D01G401600 chr1D 78.397 861 110 45 500 1324 467510221 467511041 7.230000e-135 490.0
5 TraesCS1D01G401600 chr1D 97.183 71 0 2 2151 2219 29952 29882 3.930000e-23 119.0
6 TraesCS1D01G401600 chr1D 87.879 66 3 5 474 538 467494102 467494163 3.100000e-09 73.1
7 TraesCS1D01G401600 chr1A 88.253 1013 44 17 446 1432 560487255 560486292 0.000000e+00 1142.0
8 TraesCS1D01G401600 chr1A 86.230 305 24 4 977 1266 559881471 559881772 4.670000e-82 315.0
9 TraesCS1D01G401600 chr1A 82.369 363 31 21 500 855 560479324 560478988 3.660000e-73 285.0
10 TraesCS1D01G401600 chr1A 85.932 263 30 5 1065 1324 560477519 560477261 7.920000e-70 274.0
11 TraesCS1D01G401600 chr7A 87.633 752 75 7 1426 2160 638645535 638644785 0.000000e+00 857.0
12 TraesCS1D01G401600 chr7A 86.486 740 84 12 1426 2160 680904770 680904042 0.000000e+00 798.0
13 TraesCS1D01G401600 chr7A 100.000 31 0 0 155 185 52077892 52077922 8.690000e-05 58.4
14 TraesCS1D01G401600 chr4B 89.337 694 57 6 1484 2160 529675949 529675256 0.000000e+00 856.0
15 TraesCS1D01G401600 chr2D 87.719 741 75 9 1424 2158 587387084 587386354 0.000000e+00 850.0
16 TraesCS1D01G401600 chr2D 87.110 737 59 8 1426 2161 646864169 646863468 0.000000e+00 802.0
17 TraesCS1D01G401600 chr2D 97.183 71 0 2 2151 2219 598103565 598103635 3.930000e-23 119.0
18 TraesCS1D01G401600 chr2D 94.595 37 2 0 149 185 8655060 8655096 8.690000e-05 58.4
19 TraesCS1D01G401600 chr7B 86.174 745 73 16 1426 2160 639855352 639856076 0.000000e+00 778.0
20 TraesCS1D01G401600 chr4A 88.632 563 59 5 1426 1986 619164018 619164577 0.000000e+00 680.0
21 TraesCS1D01G401600 chr4A 90.244 41 4 0 145 185 686976726 686976766 1.000000e-03 54.7
22 TraesCS1D01G401600 chr7D 93.692 428 26 1 1735 2161 131323807 131324234 6.780000e-180 640.0
23 TraesCS1D01G401600 chr7D 97.183 71 0 2 2151 2219 4228501 4228571 3.930000e-23 119.0
24 TraesCS1D01G401600 chr7D 97.183 71 0 2 2151 2219 15153600 15153530 3.930000e-23 119.0
25 TraesCS1D01G401600 chr4D 93.692 428 24 2 1735 2161 39337789 39338214 2.440000e-179 638.0
26 TraesCS1D01G401600 chr4D 97.183 71 0 2 2151 2219 492973142 492973072 3.930000e-23 119.0
27 TraesCS1D01G401600 chr5D 92.757 428 29 2 1735 2161 347389922 347389496 3.180000e-173 617.0
28 TraesCS1D01G401600 chr5D 97.183 71 0 2 2151 2219 535583564 535583634 3.930000e-23 119.0
29 TraesCS1D01G401600 chr5A 91.667 432 31 2 1735 2161 312260537 312260106 5.360000e-166 593.0
30 TraesCS1D01G401600 chr6D 89.227 427 28 11 1736 2161 11696884 11696475 3.320000e-143 518.0
31 TraesCS1D01G401600 chr6D 97.183 71 0 2 2151 2219 469062207 469062137 3.930000e-23 119.0
32 TraesCS1D01G401600 chr1B 83.834 433 36 15 414 843 645340075 645340476 4.540000e-102 381.0
33 TraesCS1D01G401600 chr1B 84.557 395 27 11 891 1267 645340475 645340853 5.910000e-96 361.0
34 TraesCS1D01G401600 chr1B 92.308 65 3 1 474 538 645313518 645313580 8.570000e-15 91.6
35 TraesCS1D01G401600 chr3D 97.183 71 0 2 2151 2219 563678132 563678062 3.930000e-23 119.0
36 TraesCS1D01G401600 chr3D 97.183 71 0 2 2151 2219 584142544 584142614 3.930000e-23 119.0
37 TraesCS1D01G401600 chrUn 100.000 31 0 0 155 185 24945736 24945706 8.690000e-05 58.4
38 TraesCS1D01G401600 chr5B 100.000 31 0 0 155 185 698003473 698003503 8.690000e-05 58.4
39 TraesCS1D01G401600 chr5B 100.000 29 0 0 157 185 564369982 564370010 1.000000e-03 54.7
40 TraesCS1D01G401600 chr5B 100.000 29 0 0 157 185 564432138 564432166 1.000000e-03 54.7
41 TraesCS1D01G401600 chr2B 100.000 31 0 0 155 185 391043734 391043704 8.690000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G401600 chr1D 467500594 467502845 2251 False 4122.0 4122 100.0000 1 2252 1 chr1D.!!$F3 2251
1 TraesCS1D01G401600 chr1D 369899929 369900682 753 False 1013.0 1013 91.2470 1423 2160 1 chr1D.!!$F1 737
2 TraesCS1D01G401600 chr1D 481924973 481925697 724 False 1000.0 1000 91.4520 1426 2161 1 chr1D.!!$F5 735
3 TraesCS1D01G401600 chr1D 451193408 451194180 772 True 811.0 811 86.4340 1426 2161 1 chr1D.!!$R2 735
4 TraesCS1D01G401600 chr1D 467510221 467511041 820 False 490.0 490 78.3970 500 1324 1 chr1D.!!$F4 824
5 TraesCS1D01G401600 chr1A 560486292 560487255 963 True 1142.0 1142 88.2530 446 1432 1 chr1A.!!$R1 986
6 TraesCS1D01G401600 chr1A 560477261 560479324 2063 True 279.5 285 84.1505 500 1324 2 chr1A.!!$R2 824
7 TraesCS1D01G401600 chr7A 638644785 638645535 750 True 857.0 857 87.6330 1426 2160 1 chr7A.!!$R1 734
8 TraesCS1D01G401600 chr7A 680904042 680904770 728 True 798.0 798 86.4860 1426 2160 1 chr7A.!!$R2 734
9 TraesCS1D01G401600 chr4B 529675256 529675949 693 True 856.0 856 89.3370 1484 2160 1 chr4B.!!$R1 676
10 TraesCS1D01G401600 chr2D 587386354 587387084 730 True 850.0 850 87.7190 1424 2158 1 chr2D.!!$R1 734
11 TraesCS1D01G401600 chr2D 646863468 646864169 701 True 802.0 802 87.1100 1426 2161 1 chr2D.!!$R2 735
12 TraesCS1D01G401600 chr7B 639855352 639856076 724 False 778.0 778 86.1740 1426 2160 1 chr7B.!!$F1 734
13 TraesCS1D01G401600 chr4A 619164018 619164577 559 False 680.0 680 88.6320 1426 1986 1 chr4A.!!$F1 560
14 TraesCS1D01G401600 chr1B 645340075 645340853 778 False 371.0 381 84.1955 414 1267 2 chr1B.!!$F2 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 835 0.02577 AACAACGCAGAAACGACGTG 59.974 50.0 0.0 0.0 40.44 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2168 3557 0.108281 GGAGTTTAGTCCCACCTCGC 60.108 60.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.615925 CACCTGGTTAGATTAGCCTAACT 57.384 43.478 0.00 0.00 44.74 2.24
23 24 6.726490 CACCTGGTTAGATTAGCCTAACTA 57.274 41.667 0.00 6.70 44.74 2.24
24 25 6.514063 CACCTGGTTAGATTAGCCTAACTAC 58.486 44.000 0.00 0.50 44.74 2.73
25 26 6.324254 CACCTGGTTAGATTAGCCTAACTACT 59.676 42.308 0.00 0.00 44.74 2.57
26 27 7.504911 CACCTGGTTAGATTAGCCTAACTACTA 59.495 40.741 0.00 0.00 44.74 1.82
27 28 8.063770 ACCTGGTTAGATTAGCCTAACTACTAA 58.936 37.037 11.92 0.00 44.74 2.24
28 29 9.091220 CCTGGTTAGATTAGCCTAACTACTAAT 57.909 37.037 11.92 0.00 44.74 1.73
67 68 9.877178 TTTGTAAAATGTTTAAAAGCCTGAGAA 57.123 25.926 0.00 0.00 0.00 2.87
68 69 9.877178 TTGTAAAATGTTTAAAAGCCTGAGAAA 57.123 25.926 0.00 0.00 0.00 2.52
74 75 9.836864 AATGTTTAAAAGCCTGAGAAATTTTCT 57.163 25.926 11.40 11.40 44.21 2.52
75 76 9.836864 ATGTTTAAAAGCCTGAGAAATTTTCTT 57.163 25.926 12.73 0.00 40.87 2.52
76 77 9.097257 TGTTTAAAAGCCTGAGAAATTTTCTTG 57.903 29.630 12.73 8.98 40.87 3.02
77 78 9.313118 GTTTAAAAGCCTGAGAAATTTTCTTGA 57.687 29.630 12.73 3.01 40.87 3.02
78 79 9.533253 TTTAAAAGCCTGAGAAATTTTCTTGAG 57.467 29.630 12.73 11.25 40.87 3.02
79 80 6.966534 AAAGCCTGAGAAATTTTCTTGAGA 57.033 33.333 12.73 0.00 40.87 3.27
80 81 5.956068 AGCCTGAGAAATTTTCTTGAGAC 57.044 39.130 12.73 5.49 40.87 3.36
81 82 5.629125 AGCCTGAGAAATTTTCTTGAGACT 58.371 37.500 12.73 7.41 40.87 3.24
82 83 5.472820 AGCCTGAGAAATTTTCTTGAGACTG 59.527 40.000 12.73 4.46 40.87 3.51
83 84 5.471456 GCCTGAGAAATTTTCTTGAGACTGA 59.529 40.000 12.73 0.00 40.87 3.41
84 85 6.567511 GCCTGAGAAATTTTCTTGAGACTGAC 60.568 42.308 12.73 0.00 40.87 3.51
85 86 6.484643 CCTGAGAAATTTTCTTGAGACTGACA 59.515 38.462 12.73 2.91 40.87 3.58
86 87 7.174599 CCTGAGAAATTTTCTTGAGACTGACAT 59.825 37.037 12.73 0.00 40.87 3.06
87 88 9.212641 CTGAGAAATTTTCTTGAGACTGACATA 57.787 33.333 12.73 0.00 40.87 2.29
88 89 8.993121 TGAGAAATTTTCTTGAGACTGACATAC 58.007 33.333 12.73 0.00 40.87 2.39
89 90 8.023050 AGAAATTTTCTTGAGACTGACATACG 57.977 34.615 5.82 0.00 36.36 3.06
90 91 6.727824 AATTTTCTTGAGACTGACATACGG 57.272 37.500 0.00 0.00 0.00 4.02
91 92 3.868757 TTCTTGAGACTGACATACGGG 57.131 47.619 0.00 0.00 0.00 5.28
92 93 1.476891 TCTTGAGACTGACATACGGGC 59.523 52.381 0.00 0.00 0.00 6.13
93 94 0.535335 TTGAGACTGACATACGGGCC 59.465 55.000 0.00 0.00 32.17 5.80
94 95 0.324368 TGAGACTGACATACGGGCCT 60.324 55.000 0.84 0.00 32.17 5.19
95 96 0.386113 GAGACTGACATACGGGCCTC 59.614 60.000 0.84 0.00 32.17 4.70
96 97 0.324368 AGACTGACATACGGGCCTCA 60.324 55.000 0.84 0.00 32.17 3.86
97 98 0.179108 GACTGACATACGGGCCTCAC 60.179 60.000 0.84 0.00 0.00 3.51
98 99 0.902984 ACTGACATACGGGCCTCACA 60.903 55.000 0.84 0.00 0.00 3.58
99 100 0.465705 CTGACATACGGGCCTCACAT 59.534 55.000 0.84 0.00 0.00 3.21
100 101 1.686587 CTGACATACGGGCCTCACATA 59.313 52.381 0.84 0.00 0.00 2.29
101 102 2.300152 CTGACATACGGGCCTCACATAT 59.700 50.000 0.84 0.00 0.00 1.78
102 103 2.037121 TGACATACGGGCCTCACATATG 59.963 50.000 0.84 0.00 0.00 1.78
103 104 2.037251 GACATACGGGCCTCACATATGT 59.963 50.000 1.41 1.41 38.78 2.29
104 105 2.037251 ACATACGGGCCTCACATATGTC 59.963 50.000 5.07 0.00 32.32 3.06
105 106 1.783071 TACGGGCCTCACATATGTCA 58.217 50.000 5.07 0.00 0.00 3.58
106 107 1.131638 ACGGGCCTCACATATGTCAT 58.868 50.000 5.07 0.00 0.00 3.06
107 108 2.325484 ACGGGCCTCACATATGTCATA 58.675 47.619 5.07 0.00 0.00 2.15
108 109 2.703536 ACGGGCCTCACATATGTCATAA 59.296 45.455 5.07 0.00 0.00 1.90
109 110 3.067106 CGGGCCTCACATATGTCATAAC 58.933 50.000 5.07 0.00 0.00 1.89
110 111 3.494223 CGGGCCTCACATATGTCATAACA 60.494 47.826 5.07 0.00 40.38 2.41
111 112 4.067896 GGGCCTCACATATGTCATAACAG 58.932 47.826 5.07 0.00 39.20 3.16
112 113 4.444876 GGGCCTCACATATGTCATAACAGT 60.445 45.833 5.07 0.00 39.20 3.55
113 114 5.221641 GGGCCTCACATATGTCATAACAGTA 60.222 44.000 5.07 0.00 39.20 2.74
114 115 6.288294 GGCCTCACATATGTCATAACAGTAA 58.712 40.000 5.07 0.00 39.20 2.24
115 116 6.765989 GGCCTCACATATGTCATAACAGTAAA 59.234 38.462 5.07 0.00 39.20 2.01
116 117 7.445402 GGCCTCACATATGTCATAACAGTAAAT 59.555 37.037 5.07 0.00 39.20 1.40
117 118 8.840321 GCCTCACATATGTCATAACAGTAAATT 58.160 33.333 5.07 0.00 39.20 1.82
126 127 9.444600 ATGTCATAACAGTAAATTAACGGAGTT 57.555 29.630 0.00 0.00 46.95 3.01
137 138 3.442996 ACGGAGTTGACTATGCTGC 57.557 52.632 0.00 0.00 37.78 5.25
138 139 0.108138 ACGGAGTTGACTATGCTGCC 60.108 55.000 0.00 0.00 37.78 4.85
139 140 0.108186 CGGAGTTGACTATGCTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
140 141 1.373570 GGAGTTGACTATGCTGCCAC 58.626 55.000 0.00 0.00 0.00 5.01
141 142 1.002366 GAGTTGACTATGCTGCCACG 58.998 55.000 0.00 0.00 0.00 4.94
142 143 0.321671 AGTTGACTATGCTGCCACGT 59.678 50.000 0.00 0.00 0.00 4.49
143 144 1.548719 AGTTGACTATGCTGCCACGTA 59.451 47.619 0.00 0.00 0.00 3.57
144 145 2.028476 AGTTGACTATGCTGCCACGTAA 60.028 45.455 0.00 0.00 0.00 3.18
145 146 2.739913 GTTGACTATGCTGCCACGTAAA 59.260 45.455 0.00 0.00 0.00 2.01
146 147 2.343101 TGACTATGCTGCCACGTAAAC 58.657 47.619 0.00 0.00 0.00 2.01
147 148 1.323534 GACTATGCTGCCACGTAAACG 59.676 52.381 0.04 0.04 46.33 3.60
148 149 0.026285 CTATGCTGCCACGTAAACGC 59.974 55.000 1.74 0.00 44.43 4.84
149 150 0.390603 TATGCTGCCACGTAAACGCT 60.391 50.000 1.74 0.00 44.43 5.07
150 151 1.234615 ATGCTGCCACGTAAACGCTT 61.235 50.000 1.74 0.00 44.43 4.68
151 152 0.600518 TGCTGCCACGTAAACGCTTA 60.601 50.000 1.74 0.00 44.43 3.09
152 153 0.179233 GCTGCCACGTAAACGCTTAC 60.179 55.000 1.74 0.00 44.43 2.34
153 154 1.141645 CTGCCACGTAAACGCTTACA 58.858 50.000 9.24 0.00 44.43 2.41
154 155 1.730064 CTGCCACGTAAACGCTTACAT 59.270 47.619 9.24 0.00 44.43 2.29
155 156 1.461512 TGCCACGTAAACGCTTACATG 59.538 47.619 9.24 3.85 44.43 3.21
156 157 1.461897 GCCACGTAAACGCTTACATGT 59.538 47.619 2.69 2.69 44.43 3.21
157 158 2.723618 GCCACGTAAACGCTTACATGTG 60.724 50.000 9.11 8.98 44.43 3.21
158 159 2.159761 CCACGTAAACGCTTACATGTGG 60.160 50.000 16.32 16.32 40.28 4.17
159 160 2.070783 ACGTAAACGCTTACATGTGGG 58.929 47.619 9.11 3.50 44.43 4.61
160 161 1.201987 CGTAAACGCTTACATGTGGGC 60.202 52.381 9.11 11.40 37.82 5.36
161 162 1.131693 GTAAACGCTTACATGTGGGCC 59.868 52.381 9.11 0.00 37.85 5.80
162 163 0.538516 AAACGCTTACATGTGGGCCA 60.539 50.000 9.11 0.00 0.00 5.36
163 164 0.538516 AACGCTTACATGTGGGCCAA 60.539 50.000 8.40 0.00 0.00 4.52
164 165 1.241315 ACGCTTACATGTGGGCCAAC 61.241 55.000 8.40 2.12 0.00 3.77
165 166 0.960364 CGCTTACATGTGGGCCAACT 60.960 55.000 8.40 0.00 0.00 3.16
166 167 0.811281 GCTTACATGTGGGCCAACTC 59.189 55.000 8.40 0.00 0.00 3.01
167 168 1.614317 GCTTACATGTGGGCCAACTCT 60.614 52.381 8.40 0.00 0.00 3.24
168 169 2.086869 CTTACATGTGGGCCAACTCTG 58.913 52.381 8.40 11.56 0.00 3.35
169 170 1.064003 TACATGTGGGCCAACTCTGT 58.936 50.000 19.08 19.08 0.00 3.41
170 171 0.250901 ACATGTGGGCCAACTCTGTC 60.251 55.000 8.40 0.00 0.00 3.51
171 172 0.250858 CATGTGGGCCAACTCTGTCA 60.251 55.000 8.40 0.00 0.00 3.58
172 173 0.700564 ATGTGGGCCAACTCTGTCAT 59.299 50.000 8.40 2.12 0.00 3.06
173 174 1.357137 TGTGGGCCAACTCTGTCATA 58.643 50.000 8.40 0.00 0.00 2.15
174 175 1.702401 TGTGGGCCAACTCTGTCATAA 59.298 47.619 8.40 0.00 0.00 1.90
175 176 2.308570 TGTGGGCCAACTCTGTCATAAT 59.691 45.455 8.40 0.00 0.00 1.28
176 177 2.945668 GTGGGCCAACTCTGTCATAATC 59.054 50.000 8.40 0.00 0.00 1.75
177 178 2.213499 GGGCCAACTCTGTCATAATCG 58.787 52.381 4.39 0.00 0.00 3.34
178 179 2.158957 GGGCCAACTCTGTCATAATCGA 60.159 50.000 4.39 0.00 0.00 3.59
179 180 3.126831 GGCCAACTCTGTCATAATCGAG 58.873 50.000 0.00 0.00 0.00 4.04
180 181 3.430929 GGCCAACTCTGTCATAATCGAGT 60.431 47.826 0.00 0.00 38.29 4.18
181 182 4.184629 GCCAACTCTGTCATAATCGAGTT 58.815 43.478 0.00 0.00 44.86 3.01
182 183 4.631813 GCCAACTCTGTCATAATCGAGTTT 59.368 41.667 0.00 0.00 42.29 2.66
183 184 5.810587 GCCAACTCTGTCATAATCGAGTTTA 59.189 40.000 0.00 0.00 42.29 2.01
184 185 6.312918 GCCAACTCTGTCATAATCGAGTTTAA 59.687 38.462 0.00 0.00 42.29 1.52
185 186 7.011482 GCCAACTCTGTCATAATCGAGTTTAAT 59.989 37.037 0.00 0.00 42.29 1.40
186 187 8.883731 CCAACTCTGTCATAATCGAGTTTAATT 58.116 33.333 0.00 0.00 42.29 1.40
189 190 8.808529 ACTCTGTCATAATCGAGTTTAATTTCG 58.191 33.333 0.00 3.48 33.21 3.46
199 200 7.278211 TCGAGTTTAATTTCGACTCAATCAG 57.722 36.000 7.50 1.44 40.55 2.90
200 201 6.866770 TCGAGTTTAATTTCGACTCAATCAGT 59.133 34.615 7.50 0.00 40.55 3.41
211 212 5.344743 GACTCAATCAGTCCCTAACATGA 57.655 43.478 0.00 0.00 45.47 3.07
212 213 5.734720 GACTCAATCAGTCCCTAACATGAA 58.265 41.667 0.00 0.00 45.47 2.57
213 214 5.738909 ACTCAATCAGTCCCTAACATGAAG 58.261 41.667 0.00 0.00 0.00 3.02
214 215 5.249393 ACTCAATCAGTCCCTAACATGAAGT 59.751 40.000 0.00 0.00 0.00 3.01
215 216 5.491070 TCAATCAGTCCCTAACATGAAGTG 58.509 41.667 0.00 0.00 0.00 3.16
216 217 3.981071 TCAGTCCCTAACATGAAGTGG 57.019 47.619 0.00 0.89 0.00 4.00
217 218 3.248024 TCAGTCCCTAACATGAAGTGGT 58.752 45.455 0.00 0.00 0.00 4.16
218 219 4.422057 TCAGTCCCTAACATGAAGTGGTA 58.578 43.478 0.00 0.00 0.00 3.25
219 220 4.466370 TCAGTCCCTAACATGAAGTGGTAG 59.534 45.833 0.00 0.00 45.88 3.18
220 221 4.223032 CAGTCCCTAACATGAAGTGGTAGT 59.777 45.833 0.00 0.00 45.02 2.73
221 222 4.844655 AGTCCCTAACATGAAGTGGTAGTT 59.155 41.667 0.00 0.00 45.02 2.24
222 223 5.309806 AGTCCCTAACATGAAGTGGTAGTTT 59.690 40.000 0.00 0.00 45.02 2.66
223 224 6.002082 GTCCCTAACATGAAGTGGTAGTTTT 58.998 40.000 0.00 0.00 45.02 2.43
224 225 6.489022 GTCCCTAACATGAAGTGGTAGTTTTT 59.511 38.462 0.00 0.00 45.02 1.94
277 278 7.778470 TTTAATAAAGTTTGCAAAGTGGTGG 57.222 32.000 19.93 0.00 0.00 4.61
278 279 5.351948 AATAAAGTTTGCAAAGTGGTGGT 57.648 34.783 19.93 1.26 0.00 4.16
279 280 3.694043 AAAGTTTGCAAAGTGGTGGTT 57.306 38.095 19.93 7.59 0.00 3.67
280 281 3.694043 AAGTTTGCAAAGTGGTGGTTT 57.306 38.095 19.93 0.00 0.00 3.27
281 282 3.694043 AGTTTGCAAAGTGGTGGTTTT 57.306 38.095 18.63 0.00 0.00 2.43
282 283 4.014569 AGTTTGCAAAGTGGTGGTTTTT 57.985 36.364 18.63 0.00 0.00 1.94
298 299 0.312416 TTTTTCGCCATGGTTGGTCG 59.688 50.000 14.67 8.04 45.57 4.79
299 300 0.535328 TTTTCGCCATGGTTGGTCGA 60.535 50.000 14.67 10.51 45.57 4.20
300 301 2.744377 TCGCCATGGTTGGTCGAA 59.256 55.556 14.67 0.00 45.57 3.71
301 302 0.322098 TTCGCCATGGTTGGTCGAAT 60.322 50.000 16.95 0.00 46.63 3.34
302 303 0.322098 TCGCCATGGTTGGTCGAATT 60.322 50.000 14.67 0.00 45.57 2.17
303 304 0.179166 CGCCATGGTTGGTCGAATTG 60.179 55.000 14.67 0.00 45.57 2.32
304 305 0.887933 GCCATGGTTGGTCGAATTGT 59.112 50.000 14.67 0.00 45.57 2.71
305 306 1.135402 GCCATGGTTGGTCGAATTGTC 60.135 52.381 14.67 0.00 45.57 3.18
306 307 1.130373 CCATGGTTGGTCGAATTGTCG 59.870 52.381 2.57 0.00 40.47 4.35
307 308 3.447937 CCATGGTTGGTCGAATTGTCGT 61.448 50.000 2.57 0.00 40.21 4.34
308 309 4.170423 CCATGGTTGGTCGAATTGTCGTA 61.170 47.826 2.57 0.00 40.21 3.43
309 310 5.962714 CCATGGTTGGTCGAATTGTCGTAG 61.963 50.000 2.57 0.00 40.21 3.51
344 345 9.933723 TGTTAAATACTTAACTACTCCCTTCAC 57.066 33.333 8.18 0.00 44.88 3.18
345 346 9.376075 GTTAAATACTTAACTACTCCCTTCACC 57.624 37.037 0.00 0.00 42.44 4.02
346 347 6.556974 AATACTTAACTACTCCCTTCACCC 57.443 41.667 0.00 0.00 0.00 4.61
347 348 3.865571 ACTTAACTACTCCCTTCACCCA 58.134 45.455 0.00 0.00 0.00 4.51
348 349 4.436079 ACTTAACTACTCCCTTCACCCAT 58.564 43.478 0.00 0.00 0.00 4.00
349 350 5.596763 ACTTAACTACTCCCTTCACCCATA 58.403 41.667 0.00 0.00 0.00 2.74
350 351 6.027482 ACTTAACTACTCCCTTCACCCATAA 58.973 40.000 0.00 0.00 0.00 1.90
351 352 6.677076 ACTTAACTACTCCCTTCACCCATAAT 59.323 38.462 0.00 0.00 0.00 1.28
352 353 7.847848 ACTTAACTACTCCCTTCACCCATAATA 59.152 37.037 0.00 0.00 0.00 0.98
353 354 8.808240 TTAACTACTCCCTTCACCCATAATAT 57.192 34.615 0.00 0.00 0.00 1.28
354 355 9.901651 TTAACTACTCCCTTCACCCATAATATA 57.098 33.333 0.00 0.00 0.00 0.86
355 356 8.808240 AACTACTCCCTTCACCCATAATATAA 57.192 34.615 0.00 0.00 0.00 0.98
356 357 8.437274 ACTACTCCCTTCACCCATAATATAAG 57.563 38.462 0.00 0.00 0.00 1.73
357 358 8.239478 ACTACTCCCTTCACCCATAATATAAGA 58.761 37.037 0.00 0.00 0.00 2.10
358 359 9.273137 CTACTCCCTTCACCCATAATATAAGAT 57.727 37.037 0.00 0.00 0.00 2.40
360 361 9.047947 ACTCCCTTCACCCATAATATAAGATAC 57.952 37.037 0.00 0.00 0.00 2.24
361 362 9.273137 CTCCCTTCACCCATAATATAAGATACT 57.727 37.037 0.00 0.00 0.00 2.12
362 363 9.629649 TCCCTTCACCCATAATATAAGATACTT 57.370 33.333 0.00 0.00 0.00 2.24
383 384 6.909909 ACTTTTACAAGCTATGGTAGTTTGC 58.090 36.000 11.78 0.00 46.77 3.68
384 385 6.488683 ACTTTTACAAGCTATGGTAGTTTGCA 59.511 34.615 11.78 0.00 46.77 4.08
385 386 6.885952 TTTACAAGCTATGGTAGTTTGCAA 57.114 33.333 11.78 0.00 46.77 4.08
386 387 6.494893 TTACAAGCTATGGTAGTTTGCAAG 57.505 37.500 11.78 0.00 46.77 4.01
387 388 4.651778 ACAAGCTATGGTAGTTTGCAAGA 58.348 39.130 11.78 0.00 46.77 3.02
388 389 5.070001 ACAAGCTATGGTAGTTTGCAAGAA 58.930 37.500 11.78 0.00 46.77 2.52
389 390 5.048713 ACAAGCTATGGTAGTTTGCAAGAAC 60.049 40.000 11.78 0.00 46.77 3.01
390 391 3.684788 AGCTATGGTAGTTTGCAAGAACG 59.315 43.478 0.00 0.00 34.74 3.95
391 392 3.435671 GCTATGGTAGTTTGCAAGAACGT 59.564 43.478 0.00 0.00 34.74 3.99
392 393 4.435651 GCTATGGTAGTTTGCAAGAACGTC 60.436 45.833 0.00 0.00 34.74 4.34
393 394 3.188159 TGGTAGTTTGCAAGAACGTCT 57.812 42.857 0.00 0.00 34.74 4.18
394 395 3.537580 TGGTAGTTTGCAAGAACGTCTT 58.462 40.909 0.00 0.00 37.14 3.01
395 396 4.695396 TGGTAGTTTGCAAGAACGTCTTA 58.305 39.130 0.00 0.00 33.78 2.10
396 397 5.302360 TGGTAGTTTGCAAGAACGTCTTAT 58.698 37.500 0.00 0.00 33.78 1.73
397 398 6.457355 TGGTAGTTTGCAAGAACGTCTTATA 58.543 36.000 0.00 0.00 33.78 0.98
398 399 7.101054 TGGTAGTTTGCAAGAACGTCTTATAT 58.899 34.615 0.00 0.00 33.78 0.86
399 400 7.604927 TGGTAGTTTGCAAGAACGTCTTATATT 59.395 33.333 0.00 0.00 33.78 1.28
400 401 9.090692 GGTAGTTTGCAAGAACGTCTTATATTA 57.909 33.333 0.00 0.00 33.78 0.98
401 402 9.897349 GTAGTTTGCAAGAACGTCTTATATTAC 57.103 33.333 0.00 0.00 33.78 1.89
402 403 7.672738 AGTTTGCAAGAACGTCTTATATTACG 58.327 34.615 0.00 5.98 44.47 3.18
403 404 7.543172 AGTTTGCAAGAACGTCTTATATTACGA 59.457 33.333 12.70 0.00 41.55 3.43
404 405 7.445900 TTGCAAGAACGTCTTATATTACGAG 57.554 36.000 12.70 0.00 41.55 4.18
405 406 6.788243 TGCAAGAACGTCTTATATTACGAGA 58.212 36.000 12.70 0.00 41.55 4.04
406 407 6.690098 TGCAAGAACGTCTTATATTACGAGAC 59.310 38.462 12.70 3.50 41.55 3.36
419 420 1.352404 CGAGACGGAAGGAGTAGCG 59.648 63.158 0.00 0.00 0.00 4.26
424 425 0.460284 ACGGAAGGAGTAGCGCATTG 60.460 55.000 11.47 0.00 0.00 2.82
429 430 0.324943 AGGAGTAGCGCATTGGTGTT 59.675 50.000 11.47 0.00 0.00 3.32
431 432 2.027561 AGGAGTAGCGCATTGGTGTTAA 60.028 45.455 11.47 0.00 0.00 2.01
432 433 2.351726 GGAGTAGCGCATTGGTGTTAAG 59.648 50.000 11.47 0.00 0.00 1.85
433 434 3.259064 GAGTAGCGCATTGGTGTTAAGA 58.741 45.455 11.47 0.00 0.00 2.10
435 436 2.472695 AGCGCATTGGTGTTAAGAGA 57.527 45.000 11.47 0.00 0.00 3.10
436 437 2.076863 AGCGCATTGGTGTTAAGAGAC 58.923 47.619 11.47 0.00 0.00 3.36
437 438 2.076863 GCGCATTGGTGTTAAGAGACT 58.923 47.619 0.30 0.00 0.00 3.24
443 444 2.054799 TGGTGTTAAGAGACTGCCCTT 58.945 47.619 0.00 0.00 0.00 3.95
448 449 4.023963 GTGTTAAGAGACTGCCCTTGTTTC 60.024 45.833 0.00 0.00 0.00 2.78
586 604 2.355797 CGTACGTACGCATGCAGTT 58.644 52.632 32.36 3.42 43.14 3.16
596 614 2.223688 ACGCATGCAGTTTGCTTTGTAA 60.224 40.909 19.57 0.00 45.31 2.41
694 715 2.838225 CCGGCGACCCTATCCTGT 60.838 66.667 9.30 0.00 0.00 4.00
695 716 2.728817 CGGCGACCCTATCCTGTC 59.271 66.667 0.00 0.00 0.00 3.51
778 800 1.605165 GCGGATTGGTTGAACCCCA 60.605 57.895 12.53 0.00 37.50 4.96
812 835 0.025770 AACAACGCAGAAACGACGTG 59.974 50.000 0.00 0.00 40.44 4.49
869 899 2.577112 CGTCGCTCTAGTGCACCG 60.577 66.667 14.63 9.78 0.00 4.94
870 900 2.202623 GTCGCTCTAGTGCACCGG 60.203 66.667 14.63 0.00 0.00 5.28
871 901 2.675423 TCGCTCTAGTGCACCGGT 60.675 61.111 14.63 0.00 0.00 5.28
872 902 2.261671 CGCTCTAGTGCACCGGTT 59.738 61.111 14.63 0.00 0.00 4.44
873 903 1.805945 CGCTCTAGTGCACCGGTTC 60.806 63.158 14.63 0.00 0.00 3.62
875 905 1.153823 CTCTAGTGCACCGGTTCCG 60.154 63.158 14.63 4.08 0.00 4.30
876 906 2.813908 CTAGTGCACCGGTTCCGC 60.814 66.667 14.63 6.36 0.00 5.54
877 907 4.728102 TAGTGCACCGGTTCCGCG 62.728 66.667 14.63 0.00 0.00 6.46
895 925 3.431725 CGGGCCAGGCTTTTCGAC 61.432 66.667 12.43 0.00 0.00 4.20
1017 1078 3.781307 ATGGCCAAGGCTCGCGTA 61.781 61.111 10.96 0.00 41.60 4.42
1107 2413 2.060383 TCATGGGAGAGAGGCCACG 61.060 63.158 5.01 0.00 0.00 4.94
1108 2414 2.765807 ATGGGAGAGAGGCCACGG 60.766 66.667 5.01 0.00 0.00 4.94
1151 2457 1.860078 CGAGAGGGCGTTTTGTCAC 59.140 57.895 0.00 0.00 0.00 3.67
1185 2491 1.139853 GAGGAGATGGTTCAGGCGAAT 59.860 52.381 0.00 0.00 32.61 3.34
1268 2577 5.380900 TCATTAGTTGATGTTGGTTCACCA 58.619 37.500 0.00 0.00 45.94 4.17
1311 2621 5.334319 TGAGCTTTCATGCAATAAATCACG 58.666 37.500 0.00 0.00 34.99 4.35
1367 2677 7.552458 TTTCACAAGCATATGTATACAGTGG 57.448 36.000 11.91 4.12 30.84 4.00
1497 2810 1.398958 AAGCATGTTTGGTTGCCCGT 61.399 50.000 0.00 0.00 41.81 5.28
1505 2818 0.457851 TTGGTTGCCCGTTTTCACTG 59.542 50.000 0.00 0.00 0.00 3.66
1584 2898 1.404181 CGAATCGGCAGTTTCTCCAGA 60.404 52.381 0.00 0.00 0.00 3.86
1720 3034 1.394151 CCTCTCCCCACTCTTCCCT 59.606 63.158 0.00 0.00 0.00 4.20
1894 3246 7.340743 TGGAGAATAGAGGTAGATAAGCATAGC 59.659 40.741 0.00 0.00 0.00 2.97
1948 3304 5.178061 ACAAGTTCATACATGCAAGATCGA 58.822 37.500 0.00 0.00 0.00 3.59
1988 3376 1.140772 GGATTGGGGGATAGGGGGTC 61.141 65.000 0.00 0.00 0.00 4.46
2164 3553 4.087892 GCTCTGGCGCCCTCTCAA 62.088 66.667 26.77 2.02 0.00 3.02
2165 3554 2.125350 CTCTGGCGCCCTCTCAAC 60.125 66.667 26.77 0.00 0.00 3.18
2166 3555 2.604686 TCTGGCGCCCTCTCAACT 60.605 61.111 26.77 0.00 0.00 3.16
2167 3556 1.304962 TCTGGCGCCCTCTCAACTA 60.305 57.895 26.77 0.00 0.00 2.24
2168 3557 1.142748 CTGGCGCCCTCTCAACTAG 59.857 63.158 26.77 7.17 0.00 2.57
2169 3558 2.202946 GGCGCCCTCTCAACTAGC 60.203 66.667 18.11 0.00 0.00 3.42
2173 3562 1.439644 GCCCTCTCAACTAGCGAGG 59.560 63.158 9.31 9.54 46.69 4.63
2174 3563 1.324005 GCCCTCTCAACTAGCGAGGT 61.324 60.000 13.63 0.00 45.88 3.85
2175 3564 0.457851 CCCTCTCAACTAGCGAGGTG 59.542 60.000 5.37 5.37 45.88 4.00
2176 3565 0.457851 CCTCTCAACTAGCGAGGTGG 59.542 60.000 12.25 3.21 43.00 4.61
2177 3566 0.457851 CTCTCAACTAGCGAGGTGGG 59.542 60.000 12.25 8.94 42.97 4.61
2178 3567 2.579878 CTCAACTAGCGAGGTGGGA 58.420 57.895 5.72 0.00 44.60 4.37
2179 3568 0.173708 CTCAACTAGCGAGGTGGGAC 59.826 60.000 5.72 0.00 44.60 4.46
2180 3569 0.251653 TCAACTAGCGAGGTGGGACT 60.252 55.000 12.25 0.00 41.16 3.85
2181 3570 1.005097 TCAACTAGCGAGGTGGGACTA 59.995 52.381 12.25 0.00 41.16 2.59
2182 3571 1.822990 CAACTAGCGAGGTGGGACTAA 59.177 52.381 3.58 0.00 36.67 2.24
2183 3572 2.226962 ACTAGCGAGGTGGGACTAAA 57.773 50.000 0.00 0.00 0.00 1.85
2184 3573 1.823610 ACTAGCGAGGTGGGACTAAAC 59.176 52.381 0.00 0.00 0.00 2.01
2185 3574 2.100989 CTAGCGAGGTGGGACTAAACT 58.899 52.381 0.00 0.00 0.00 2.66
2186 3575 0.896226 AGCGAGGTGGGACTAAACTC 59.104 55.000 0.00 0.00 0.00 3.01
2187 3576 0.108281 GCGAGGTGGGACTAAACTCC 60.108 60.000 0.00 0.00 0.00 3.85
2194 3583 3.950869 GGACTAAACTCCCACCACC 57.049 57.895 0.00 0.00 0.00 4.61
2195 3584 1.061546 GGACTAAACTCCCACCACCA 58.938 55.000 0.00 0.00 0.00 4.17
2196 3585 1.271217 GGACTAAACTCCCACCACCAC 60.271 57.143 0.00 0.00 0.00 4.16
2197 3586 0.395312 ACTAAACTCCCACCACCACG 59.605 55.000 0.00 0.00 0.00 4.94
2198 3587 0.953960 CTAAACTCCCACCACCACGC 60.954 60.000 0.00 0.00 0.00 5.34
2199 3588 2.400269 TAAACTCCCACCACCACGCC 62.400 60.000 0.00 0.00 0.00 5.68
2219 3608 4.627801 TGTGCGCGGCCTTTGGTA 62.628 61.111 8.83 0.00 0.00 3.25
2220 3609 4.097863 GTGCGCGGCCTTTGGTAC 62.098 66.667 8.83 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.615925 AGTTAGGCTAATCTAACCAGGTG 57.384 43.478 10.65 0.00 46.10 4.00
1 2 6.442091 AGTAGTTAGGCTAATCTAACCAGGT 58.558 40.000 10.65 0.00 46.10 4.00
2 3 6.980416 AGTAGTTAGGCTAATCTAACCAGG 57.020 41.667 10.65 0.00 46.10 4.45
41 42 9.877178 TTCTCAGGCTTTTAAACATTTTACAAA 57.123 25.926 0.00 0.00 0.00 2.83
42 43 9.877178 TTTCTCAGGCTTTTAAACATTTTACAA 57.123 25.926 0.00 0.00 0.00 2.41
48 49 9.836864 AGAAAATTTCTCAGGCTTTTAAACATT 57.163 25.926 1.80 0.00 34.07 2.71
49 50 9.836864 AAGAAAATTTCTCAGGCTTTTAAACAT 57.163 25.926 8.86 0.00 39.61 2.71
50 51 9.097257 CAAGAAAATTTCTCAGGCTTTTAAACA 57.903 29.630 8.86 0.00 39.61 2.83
51 52 9.313118 TCAAGAAAATTTCTCAGGCTTTTAAAC 57.687 29.630 8.86 0.00 39.61 2.01
52 53 9.533253 CTCAAGAAAATTTCTCAGGCTTTTAAA 57.467 29.630 8.86 0.00 39.61 1.52
53 54 8.912988 TCTCAAGAAAATTTCTCAGGCTTTTAA 58.087 29.630 8.86 0.00 39.61 1.52
54 55 8.352942 GTCTCAAGAAAATTTCTCAGGCTTTTA 58.647 33.333 8.86 0.00 39.61 1.52
55 56 7.069208 AGTCTCAAGAAAATTTCTCAGGCTTTT 59.931 33.333 8.86 0.00 39.61 2.27
56 57 6.548993 AGTCTCAAGAAAATTTCTCAGGCTTT 59.451 34.615 8.86 0.00 39.61 3.51
57 58 6.016443 CAGTCTCAAGAAAATTTCTCAGGCTT 60.016 38.462 15.22 3.66 39.61 4.35
58 59 5.472820 CAGTCTCAAGAAAATTTCTCAGGCT 59.527 40.000 8.86 11.44 39.61 4.58
59 60 5.471456 TCAGTCTCAAGAAAATTTCTCAGGC 59.529 40.000 8.86 9.46 39.61 4.85
60 61 6.484643 TGTCAGTCTCAAGAAAATTTCTCAGG 59.515 38.462 8.86 2.62 39.61 3.86
61 62 7.488187 TGTCAGTCTCAAGAAAATTTCTCAG 57.512 36.000 8.86 8.25 39.61 3.35
62 63 8.993121 GTATGTCAGTCTCAAGAAAATTTCTCA 58.007 33.333 8.86 0.00 39.61 3.27
63 64 8.165428 CGTATGTCAGTCTCAAGAAAATTTCTC 58.835 37.037 8.86 0.00 39.61 2.87
64 65 7.118390 CCGTATGTCAGTCTCAAGAAAATTTCT 59.882 37.037 1.80 1.80 43.15 2.52
65 66 7.237173 CCGTATGTCAGTCTCAAGAAAATTTC 58.763 38.462 0.00 0.00 0.00 2.17
66 67 6.149474 CCCGTATGTCAGTCTCAAGAAAATTT 59.851 38.462 0.00 0.00 0.00 1.82
67 68 5.643777 CCCGTATGTCAGTCTCAAGAAAATT 59.356 40.000 0.00 0.00 0.00 1.82
68 69 5.178797 CCCGTATGTCAGTCTCAAGAAAAT 58.821 41.667 0.00 0.00 0.00 1.82
69 70 4.566004 CCCGTATGTCAGTCTCAAGAAAA 58.434 43.478 0.00 0.00 0.00 2.29
70 71 3.616560 GCCCGTATGTCAGTCTCAAGAAA 60.617 47.826 0.00 0.00 0.00 2.52
71 72 2.094182 GCCCGTATGTCAGTCTCAAGAA 60.094 50.000 0.00 0.00 0.00 2.52
72 73 1.476891 GCCCGTATGTCAGTCTCAAGA 59.523 52.381 0.00 0.00 0.00 3.02
73 74 1.471676 GGCCCGTATGTCAGTCTCAAG 60.472 57.143 0.00 0.00 0.00 3.02
74 75 0.535335 GGCCCGTATGTCAGTCTCAA 59.465 55.000 0.00 0.00 0.00 3.02
75 76 0.324368 AGGCCCGTATGTCAGTCTCA 60.324 55.000 0.00 0.00 0.00 3.27
76 77 0.386113 GAGGCCCGTATGTCAGTCTC 59.614 60.000 0.00 0.00 0.00 3.36
77 78 0.324368 TGAGGCCCGTATGTCAGTCT 60.324 55.000 0.00 0.00 0.00 3.24
78 79 0.179108 GTGAGGCCCGTATGTCAGTC 60.179 60.000 0.00 0.00 0.00 3.51
79 80 0.902984 TGTGAGGCCCGTATGTCAGT 60.903 55.000 0.00 0.00 0.00 3.41
80 81 0.465705 ATGTGAGGCCCGTATGTCAG 59.534 55.000 0.00 0.00 0.00 3.51
81 82 1.783071 TATGTGAGGCCCGTATGTCA 58.217 50.000 0.00 0.00 0.00 3.58
82 83 2.037251 ACATATGTGAGGCCCGTATGTC 59.963 50.000 15.69 0.69 39.61 3.06
83 84 2.037251 GACATATGTGAGGCCCGTATGT 59.963 50.000 19.45 19.45 43.97 2.29
84 85 2.037121 TGACATATGTGAGGCCCGTATG 59.963 50.000 14.43 14.68 37.66 2.39
85 86 2.325484 TGACATATGTGAGGCCCGTAT 58.675 47.619 14.43 0.00 0.00 3.06
86 87 1.783071 TGACATATGTGAGGCCCGTA 58.217 50.000 14.43 0.00 0.00 4.02
87 88 1.131638 ATGACATATGTGAGGCCCGT 58.868 50.000 14.43 0.00 0.00 5.28
88 89 3.067106 GTTATGACATATGTGAGGCCCG 58.933 50.000 14.43 0.00 0.00 6.13
89 90 4.067896 CTGTTATGACATATGTGAGGCCC 58.932 47.826 14.43 0.00 34.72 5.80
90 91 4.708177 ACTGTTATGACATATGTGAGGCC 58.292 43.478 14.43 0.00 34.72 5.19
91 92 7.786178 TTTACTGTTATGACATATGTGAGGC 57.214 36.000 14.43 0.00 34.72 4.70
100 101 9.444600 AACTCCGTTAATTTACTGTTATGACAT 57.555 29.630 0.00 0.00 34.72 3.06
101 102 8.714179 CAACTCCGTTAATTTACTGTTATGACA 58.286 33.333 0.00 0.00 0.00 3.58
102 103 8.928733 TCAACTCCGTTAATTTACTGTTATGAC 58.071 33.333 0.00 0.00 0.00 3.06
103 104 8.928733 GTCAACTCCGTTAATTTACTGTTATGA 58.071 33.333 0.00 0.00 0.00 2.15
104 105 8.932791 AGTCAACTCCGTTAATTTACTGTTATG 58.067 33.333 0.00 0.00 0.00 1.90
107 108 8.932791 CATAGTCAACTCCGTTAATTTACTGTT 58.067 33.333 0.00 0.00 0.00 3.16
108 109 7.064253 GCATAGTCAACTCCGTTAATTTACTGT 59.936 37.037 0.00 0.00 0.00 3.55
109 110 7.277981 AGCATAGTCAACTCCGTTAATTTACTG 59.722 37.037 0.00 0.00 0.00 2.74
110 111 7.277981 CAGCATAGTCAACTCCGTTAATTTACT 59.722 37.037 0.00 0.00 0.00 2.24
111 112 7.399523 CAGCATAGTCAACTCCGTTAATTTAC 58.600 38.462 0.00 0.00 0.00 2.01
112 113 6.036735 GCAGCATAGTCAACTCCGTTAATTTA 59.963 38.462 0.00 0.00 0.00 1.40
113 114 5.163754 GCAGCATAGTCAACTCCGTTAATTT 60.164 40.000 0.00 0.00 0.00 1.82
114 115 4.332819 GCAGCATAGTCAACTCCGTTAATT 59.667 41.667 0.00 0.00 0.00 1.40
115 116 3.871594 GCAGCATAGTCAACTCCGTTAAT 59.128 43.478 0.00 0.00 0.00 1.40
116 117 3.259064 GCAGCATAGTCAACTCCGTTAA 58.741 45.455 0.00 0.00 0.00 2.01
117 118 2.418197 GGCAGCATAGTCAACTCCGTTA 60.418 50.000 0.00 0.00 0.00 3.18
118 119 1.676014 GGCAGCATAGTCAACTCCGTT 60.676 52.381 0.00 0.00 0.00 4.44
119 120 0.108138 GGCAGCATAGTCAACTCCGT 60.108 55.000 0.00 0.00 0.00 4.69
120 121 0.108186 TGGCAGCATAGTCAACTCCG 60.108 55.000 0.00 0.00 0.00 4.63
121 122 1.373570 GTGGCAGCATAGTCAACTCC 58.626 55.000 0.00 0.00 0.00 3.85
122 123 1.002366 CGTGGCAGCATAGTCAACTC 58.998 55.000 0.00 0.00 0.00 3.01
123 124 0.321671 ACGTGGCAGCATAGTCAACT 59.678 50.000 0.00 0.00 0.00 3.16
124 125 2.004583 TACGTGGCAGCATAGTCAAC 57.995 50.000 0.00 0.00 0.00 3.18
125 126 2.739913 GTTTACGTGGCAGCATAGTCAA 59.260 45.455 0.00 0.00 0.00 3.18
126 127 2.343101 GTTTACGTGGCAGCATAGTCA 58.657 47.619 0.00 0.00 0.00 3.41
127 128 1.323534 CGTTTACGTGGCAGCATAGTC 59.676 52.381 0.00 0.00 34.11 2.59
128 129 1.355971 CGTTTACGTGGCAGCATAGT 58.644 50.000 0.00 0.00 34.11 2.12
129 130 0.026285 GCGTTTACGTGGCAGCATAG 59.974 55.000 0.00 0.00 42.22 2.23
130 131 0.390603 AGCGTTTACGTGGCAGCATA 60.391 50.000 0.00 0.00 42.22 3.14
131 132 1.234615 AAGCGTTTACGTGGCAGCAT 61.235 50.000 0.00 0.00 42.22 3.79
132 133 0.600518 TAAGCGTTTACGTGGCAGCA 60.601 50.000 0.00 0.00 42.22 4.41
133 134 0.179233 GTAAGCGTTTACGTGGCAGC 60.179 55.000 6.40 0.00 42.22 5.25
134 135 1.141645 TGTAAGCGTTTACGTGGCAG 58.858 50.000 16.00 0.00 41.68 4.85
135 136 1.461512 CATGTAAGCGTTTACGTGGCA 59.538 47.619 27.34 8.64 46.19 4.92
136 137 2.153680 CATGTAAGCGTTTACGTGGC 57.846 50.000 27.34 3.61 46.19 5.01
139 140 2.070783 CCCACATGTAAGCGTTTACGT 58.929 47.619 16.00 13.45 41.68 3.57
140 141 1.201987 GCCCACATGTAAGCGTTTACG 60.202 52.381 16.00 6.60 41.68 3.18
141 142 1.131693 GGCCCACATGTAAGCGTTTAC 59.868 52.381 14.50 14.50 39.69 2.01
142 143 1.271434 TGGCCCACATGTAAGCGTTTA 60.271 47.619 0.00 0.00 0.00 2.01
143 144 0.538516 TGGCCCACATGTAAGCGTTT 60.539 50.000 0.00 0.00 0.00 3.60
144 145 0.538516 TTGGCCCACATGTAAGCGTT 60.539 50.000 0.00 0.00 0.00 4.84
145 146 1.074072 TTGGCCCACATGTAAGCGT 59.926 52.632 0.00 0.00 0.00 5.07
146 147 0.960364 AGTTGGCCCACATGTAAGCG 60.960 55.000 10.02 0.00 0.00 4.68
147 148 0.811281 GAGTTGGCCCACATGTAAGC 59.189 55.000 10.02 10.13 0.00 3.09
148 149 2.086869 CAGAGTTGGCCCACATGTAAG 58.913 52.381 10.02 0.00 0.00 2.34
149 150 1.423541 ACAGAGTTGGCCCACATGTAA 59.576 47.619 14.02 0.00 0.00 2.41
150 151 1.003118 GACAGAGTTGGCCCACATGTA 59.997 52.381 15.18 0.00 0.00 2.29
151 152 0.250901 GACAGAGTTGGCCCACATGT 60.251 55.000 15.14 15.14 0.00 3.21
152 153 0.250858 TGACAGAGTTGGCCCACATG 60.251 55.000 10.02 9.88 0.00 3.21
153 154 0.700564 ATGACAGAGTTGGCCCACAT 59.299 50.000 10.02 0.00 0.00 3.21
154 155 1.357137 TATGACAGAGTTGGCCCACA 58.643 50.000 10.02 0.00 0.00 4.17
155 156 2.489938 TTATGACAGAGTTGGCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
156 157 2.419990 CGATTATGACAGAGTTGGCCCA 60.420 50.000 0.00 0.00 0.00 5.36
157 158 2.158957 TCGATTATGACAGAGTTGGCCC 60.159 50.000 0.00 0.00 0.00 5.80
158 159 3.126831 CTCGATTATGACAGAGTTGGCC 58.873 50.000 0.00 0.00 0.00 5.36
159 160 3.786635 ACTCGATTATGACAGAGTTGGC 58.213 45.455 0.00 0.00 40.64 4.52
163 164 8.808529 CGAAATTAAACTCGATTATGACAGAGT 58.191 33.333 4.05 0.00 44.81 3.24
164 165 9.020813 TCGAAATTAAACTCGATTATGACAGAG 57.979 33.333 7.87 0.00 39.07 3.35
165 166 8.804743 GTCGAAATTAAACTCGATTATGACAGA 58.195 33.333 13.41 0.00 45.08 3.41
166 167 8.808529 AGTCGAAATTAAACTCGATTATGACAG 58.191 33.333 13.41 0.00 45.08 3.51
167 168 8.697846 AGTCGAAATTAAACTCGATTATGACA 57.302 30.769 13.41 0.00 45.08 3.58
168 169 8.804743 TGAGTCGAAATTAAACTCGATTATGAC 58.195 33.333 13.41 3.33 45.08 3.06
169 170 8.920509 TGAGTCGAAATTAAACTCGATTATGA 57.079 30.769 13.41 0.00 45.08 2.15
172 173 9.361315 TGATTGAGTCGAAATTAAACTCGATTA 57.639 29.630 13.41 10.07 45.08 1.75
173 174 8.251750 TGATTGAGTCGAAATTAAACTCGATT 57.748 30.769 13.41 10.26 45.08 3.34
174 175 7.545965 ACTGATTGAGTCGAAATTAAACTCGAT 59.454 33.333 13.41 13.45 45.08 3.59
175 176 6.866770 ACTGATTGAGTCGAAATTAAACTCGA 59.133 34.615 7.87 7.87 41.84 4.04
176 177 7.050281 ACTGATTGAGTCGAAATTAAACTCG 57.950 36.000 9.12 3.76 41.84 4.18
190 191 5.249393 ACTTCATGTTAGGGACTGATTGAGT 59.751 40.000 0.00 0.00 41.52 3.41
191 192 5.583854 CACTTCATGTTAGGGACTGATTGAG 59.416 44.000 0.00 0.00 41.52 3.02
192 193 5.491070 CACTTCATGTTAGGGACTGATTGA 58.509 41.667 0.00 0.00 41.52 2.57
193 194 4.637534 CCACTTCATGTTAGGGACTGATTG 59.362 45.833 0.00 0.00 41.52 2.67
194 195 4.289672 ACCACTTCATGTTAGGGACTGATT 59.710 41.667 0.00 0.00 41.52 2.57
195 196 3.846588 ACCACTTCATGTTAGGGACTGAT 59.153 43.478 0.00 0.00 41.52 2.90
196 197 3.248024 ACCACTTCATGTTAGGGACTGA 58.752 45.455 0.00 0.00 41.52 3.41
197 198 3.703001 ACCACTTCATGTTAGGGACTG 57.297 47.619 0.00 0.00 41.52 3.51
198 199 4.426704 ACTACCACTTCATGTTAGGGACT 58.573 43.478 0.00 0.00 46.37 3.85
199 200 4.820894 ACTACCACTTCATGTTAGGGAC 57.179 45.455 0.00 0.00 0.00 4.46
200 201 5.836024 AAACTACCACTTCATGTTAGGGA 57.164 39.130 0.00 0.00 0.00 4.20
201 202 6.894339 AAAAACTACCACTTCATGTTAGGG 57.106 37.500 0.00 0.00 0.00 3.53
251 252 8.669243 CCACCACTTTGCAAACTTTATTAAAAA 58.331 29.630 8.05 0.00 0.00 1.94
252 253 7.824779 ACCACCACTTTGCAAACTTTATTAAAA 59.175 29.630 8.05 0.00 0.00 1.52
253 254 7.331791 ACCACCACTTTGCAAACTTTATTAAA 58.668 30.769 8.05 0.00 0.00 1.52
254 255 6.879400 ACCACCACTTTGCAAACTTTATTAA 58.121 32.000 8.05 0.00 0.00 1.40
255 256 6.472686 ACCACCACTTTGCAAACTTTATTA 57.527 33.333 8.05 0.00 0.00 0.98
256 257 5.351948 ACCACCACTTTGCAAACTTTATT 57.648 34.783 8.05 0.00 0.00 1.40
257 258 5.351948 AACCACCACTTTGCAAACTTTAT 57.648 34.783 8.05 0.00 0.00 1.40
258 259 4.810191 AACCACCACTTTGCAAACTTTA 57.190 36.364 8.05 0.00 0.00 1.85
259 260 3.694043 AACCACCACTTTGCAAACTTT 57.306 38.095 8.05 0.00 0.00 2.66
260 261 3.694043 AAACCACCACTTTGCAAACTT 57.306 38.095 8.05 0.00 0.00 2.66
261 262 3.694043 AAAACCACCACTTTGCAAACT 57.306 38.095 8.05 0.00 0.00 2.66
319 320 9.376075 GGTGAAGGGAGTAGTTAAGTATTTAAC 57.624 37.037 11.77 11.77 45.81 2.01
320 321 8.542926 GGGTGAAGGGAGTAGTTAAGTATTTAA 58.457 37.037 0.00 0.00 0.00 1.52
321 322 7.679453 TGGGTGAAGGGAGTAGTTAAGTATTTA 59.321 37.037 0.00 0.00 0.00 1.40
322 323 6.502863 TGGGTGAAGGGAGTAGTTAAGTATTT 59.497 38.462 0.00 0.00 0.00 1.40
323 324 6.027482 TGGGTGAAGGGAGTAGTTAAGTATT 58.973 40.000 0.00 0.00 0.00 1.89
324 325 5.596763 TGGGTGAAGGGAGTAGTTAAGTAT 58.403 41.667 0.00 0.00 0.00 2.12
325 326 5.014534 TGGGTGAAGGGAGTAGTTAAGTA 57.985 43.478 0.00 0.00 0.00 2.24
326 327 3.865571 TGGGTGAAGGGAGTAGTTAAGT 58.134 45.455 0.00 0.00 0.00 2.24
327 328 6.555463 TTATGGGTGAAGGGAGTAGTTAAG 57.445 41.667 0.00 0.00 0.00 1.85
328 329 8.808240 ATATTATGGGTGAAGGGAGTAGTTAA 57.192 34.615 0.00 0.00 0.00 2.01
329 330 9.901651 TTATATTATGGGTGAAGGGAGTAGTTA 57.098 33.333 0.00 0.00 0.00 2.24
330 331 8.808240 TTATATTATGGGTGAAGGGAGTAGTT 57.192 34.615 0.00 0.00 0.00 2.24
331 332 8.239478 TCTTATATTATGGGTGAAGGGAGTAGT 58.761 37.037 0.00 0.00 0.00 2.73
332 333 8.666129 TCTTATATTATGGGTGAAGGGAGTAG 57.334 38.462 0.00 0.00 0.00 2.57
334 335 9.047947 GTATCTTATATTATGGGTGAAGGGAGT 57.952 37.037 0.00 0.00 0.00 3.85
335 336 9.273137 AGTATCTTATATTATGGGTGAAGGGAG 57.727 37.037 0.00 0.00 0.00 4.30
336 337 9.629649 AAGTATCTTATATTATGGGTGAAGGGA 57.370 33.333 0.00 0.00 0.00 4.20
357 358 8.674607 GCAAACTACCATAGCTTGTAAAAGTAT 58.325 33.333 0.00 0.00 35.03 2.12
358 359 7.662258 TGCAAACTACCATAGCTTGTAAAAGTA 59.338 33.333 0.00 0.00 35.03 2.24
359 360 6.488683 TGCAAACTACCATAGCTTGTAAAAGT 59.511 34.615 0.00 0.00 35.03 2.66
360 361 6.908825 TGCAAACTACCATAGCTTGTAAAAG 58.091 36.000 0.00 0.00 35.03 2.27
361 362 6.885952 TGCAAACTACCATAGCTTGTAAAA 57.114 33.333 0.00 0.00 35.03 1.52
362 363 6.712998 TCTTGCAAACTACCATAGCTTGTAAA 59.287 34.615 0.00 0.00 36.52 2.01
363 364 6.234920 TCTTGCAAACTACCATAGCTTGTAA 58.765 36.000 0.00 3.56 35.25 2.41
364 365 5.800296 TCTTGCAAACTACCATAGCTTGTA 58.200 37.500 0.00 0.00 35.03 2.41
365 366 4.651778 TCTTGCAAACTACCATAGCTTGT 58.348 39.130 0.00 0.00 35.03 3.16
366 367 5.393962 GTTCTTGCAAACTACCATAGCTTG 58.606 41.667 0.00 0.00 35.52 4.01
367 368 4.154195 CGTTCTTGCAAACTACCATAGCTT 59.846 41.667 0.00 0.00 0.00 3.74
368 369 3.684788 CGTTCTTGCAAACTACCATAGCT 59.315 43.478 0.00 0.00 0.00 3.32
369 370 3.435671 ACGTTCTTGCAAACTACCATAGC 59.564 43.478 0.00 0.00 0.00 2.97
370 371 4.929808 AGACGTTCTTGCAAACTACCATAG 59.070 41.667 0.00 0.00 0.00 2.23
371 372 4.890088 AGACGTTCTTGCAAACTACCATA 58.110 39.130 0.00 0.00 0.00 2.74
372 373 3.740115 AGACGTTCTTGCAAACTACCAT 58.260 40.909 0.00 0.00 0.00 3.55
373 374 3.188159 AGACGTTCTTGCAAACTACCA 57.812 42.857 0.00 0.00 0.00 3.25
374 375 5.857822 ATAAGACGTTCTTGCAAACTACC 57.142 39.130 0.00 0.00 37.29 3.18
375 376 9.897349 GTAATATAAGACGTTCTTGCAAACTAC 57.103 33.333 0.00 0.00 37.29 2.73
376 377 8.800972 CGTAATATAAGACGTTCTTGCAAACTA 58.199 33.333 0.00 0.00 37.29 2.24
377 378 7.543172 TCGTAATATAAGACGTTCTTGCAAACT 59.457 33.333 0.00 0.00 37.29 2.66
378 379 7.669098 TCGTAATATAAGACGTTCTTGCAAAC 58.331 34.615 0.00 0.00 37.29 2.93
379 380 7.756272 TCTCGTAATATAAGACGTTCTTGCAAA 59.244 33.333 0.00 0.00 37.29 3.68
380 381 7.219535 GTCTCGTAATATAAGACGTTCTTGCAA 59.780 37.037 0.00 0.00 37.29 4.08
381 382 6.690098 GTCTCGTAATATAAGACGTTCTTGCA 59.310 38.462 9.58 0.00 37.29 4.08
382 383 7.080068 GTCTCGTAATATAAGACGTTCTTGC 57.920 40.000 9.58 0.00 37.29 4.01
390 391 6.204495 ACTCCTTCCGTCTCGTAATATAAGAC 59.796 42.308 0.00 0.00 36.82 3.01
391 392 6.294473 ACTCCTTCCGTCTCGTAATATAAGA 58.706 40.000 0.00 0.00 0.00 2.10
392 393 6.557291 ACTCCTTCCGTCTCGTAATATAAG 57.443 41.667 0.00 0.00 0.00 1.73
393 394 6.148480 GCTACTCCTTCCGTCTCGTAATATAA 59.852 42.308 0.00 0.00 0.00 0.98
394 395 5.641209 GCTACTCCTTCCGTCTCGTAATATA 59.359 44.000 0.00 0.00 0.00 0.86
395 396 4.455190 GCTACTCCTTCCGTCTCGTAATAT 59.545 45.833 0.00 0.00 0.00 1.28
396 397 3.812053 GCTACTCCTTCCGTCTCGTAATA 59.188 47.826 0.00 0.00 0.00 0.98
397 398 2.617774 GCTACTCCTTCCGTCTCGTAAT 59.382 50.000 0.00 0.00 0.00 1.89
398 399 2.012673 GCTACTCCTTCCGTCTCGTAA 58.987 52.381 0.00 0.00 0.00 3.18
399 400 1.661341 GCTACTCCTTCCGTCTCGTA 58.339 55.000 0.00 0.00 0.00 3.43
400 401 1.367599 CGCTACTCCTTCCGTCTCGT 61.368 60.000 0.00 0.00 0.00 4.18
401 402 1.352404 CGCTACTCCTTCCGTCTCG 59.648 63.158 0.00 0.00 0.00 4.04
402 403 1.064458 GCGCTACTCCTTCCGTCTC 59.936 63.158 0.00 0.00 0.00 3.36
403 404 1.038130 ATGCGCTACTCCTTCCGTCT 61.038 55.000 9.73 0.00 0.00 4.18
404 405 0.179108 AATGCGCTACTCCTTCCGTC 60.179 55.000 9.73 0.00 0.00 4.79
405 406 0.460284 CAATGCGCTACTCCTTCCGT 60.460 55.000 9.73 0.00 0.00 4.69
406 407 1.154205 CCAATGCGCTACTCCTTCCG 61.154 60.000 9.73 0.00 0.00 4.30
407 408 0.107654 ACCAATGCGCTACTCCTTCC 60.108 55.000 9.73 0.00 0.00 3.46
408 409 1.009829 CACCAATGCGCTACTCCTTC 58.990 55.000 9.73 0.00 0.00 3.46
409 410 0.324943 ACACCAATGCGCTACTCCTT 59.675 50.000 9.73 0.00 0.00 3.36
410 411 0.324943 AACACCAATGCGCTACTCCT 59.675 50.000 9.73 0.00 0.00 3.69
411 412 2.018542 TAACACCAATGCGCTACTCC 57.981 50.000 9.73 0.00 0.00 3.85
412 413 3.259064 TCTTAACACCAATGCGCTACTC 58.741 45.455 9.73 0.00 0.00 2.59
419 420 2.162408 GGCAGTCTCTTAACACCAATGC 59.838 50.000 0.00 0.00 0.00 3.56
424 425 2.224548 ACAAGGGCAGTCTCTTAACACC 60.225 50.000 0.00 0.00 0.00 4.16
429 430 4.640771 ATGAAACAAGGGCAGTCTCTTA 57.359 40.909 0.00 0.00 0.00 2.10
431 432 3.515602 AATGAAACAAGGGCAGTCTCT 57.484 42.857 0.00 0.00 0.00 3.10
432 433 3.319122 ACAAATGAAACAAGGGCAGTCTC 59.681 43.478 0.00 0.00 0.00 3.36
433 434 3.299503 ACAAATGAAACAAGGGCAGTCT 58.700 40.909 0.00 0.00 0.00 3.24
435 436 2.034558 CGACAAATGAAACAAGGGCAGT 59.965 45.455 0.00 0.00 0.00 4.40
436 437 2.607771 CCGACAAATGAAACAAGGGCAG 60.608 50.000 0.00 0.00 0.00 4.85
437 438 1.339610 CCGACAAATGAAACAAGGGCA 59.660 47.619 0.00 0.00 0.00 5.36
443 444 4.748892 TCTTTTTGCCGACAAATGAAACA 58.251 34.783 0.00 0.00 44.96 2.83
448 449 3.652274 ACCATCTTTTTGCCGACAAATG 58.348 40.909 0.00 0.00 44.96 2.32
586 604 4.150980 CGTACTGGTCGATTTACAAAGCAA 59.849 41.667 0.00 0.00 0.00 3.91
596 614 3.539604 AGCTAGTACGTACTGGTCGATT 58.460 45.455 33.23 14.77 37.16 3.34
756 777 3.059386 TTCAACCAATCCGCCGGC 61.059 61.111 19.07 19.07 0.00 6.13
778 800 0.178975 TTGTTCCGTGCCCTTTCCAT 60.179 50.000 0.00 0.00 0.00 3.41
812 835 4.275936 AGCATATCAAATCGGTTTGTAGCC 59.724 41.667 20.07 7.14 44.03 3.93
878 908 3.431725 GTCGAAAAGCCTGGCCCG 61.432 66.667 16.57 13.88 0.00 6.13
879 909 3.062466 GGTCGAAAAGCCTGGCCC 61.062 66.667 16.57 3.31 0.00 5.80
881 911 2.982744 GCTGGTCGAAAAGCCTGGC 61.983 63.158 11.65 11.65 33.12 4.85
882 912 2.680913 CGCTGGTCGAAAAGCCTGG 61.681 63.158 13.39 0.00 41.67 4.45
883 913 2.863153 CGCTGGTCGAAAAGCCTG 59.137 61.111 13.39 4.08 41.67 4.85
884 914 3.050275 GCGCTGGTCGAAAAGCCT 61.050 61.111 13.39 0.00 41.67 4.58
885 915 4.445545 CGCGCTGGTCGAAAAGCC 62.446 66.667 5.56 6.91 41.67 4.35
886 916 3.411351 TCGCGCTGGTCGAAAAGC 61.411 61.111 5.56 9.94 41.67 3.51
887 917 2.470286 GTCGCGCTGGTCGAAAAG 59.530 61.111 5.56 0.00 41.67 2.27
888 918 3.399770 CGTCGCGCTGGTCGAAAA 61.400 61.111 5.56 0.00 41.67 2.29
1036 1105 3.723235 CTAGGAGCGCGCACACCAT 62.723 63.158 35.10 21.54 0.00 3.55
1286 2595 6.237384 CGTGATTTATTGCATGAAAGCTCAAC 60.237 38.462 0.00 1.35 34.49 3.18
1311 2621 5.527582 TCTCTTTTGCTACCAAGACAAGAAC 59.472 40.000 0.00 0.00 29.64 3.01
1359 2669 0.725686 CTCGACGACGTCCACTGTAT 59.274 55.000 21.63 0.00 40.69 2.29
1367 2677 2.306799 AACAAGTACTCGACGACGTC 57.693 50.000 18.04 18.04 40.69 4.34
1473 2786 3.205338 GGCAACCAAACATGCTTCTTTT 58.795 40.909 0.00 0.00 42.20 2.27
1497 2810 0.685785 TGCAGGCCCAACAGTGAAAA 60.686 50.000 0.00 0.00 0.00 2.29
1505 2818 4.120331 GTGCGATGCAGGCCCAAC 62.120 66.667 0.00 0.00 40.08 3.77
1720 3034 1.616187 CCGGTGAGAGTTGGGAGAGTA 60.616 57.143 0.00 0.00 0.00 2.59
1871 3223 6.320164 CCGCTATGCTTATCTACCTCTATTCT 59.680 42.308 0.00 0.00 0.00 2.40
1894 3246 6.967135 TGCTATGAACTAGTATGAACTACCG 58.033 40.000 0.00 0.00 37.15 4.02
1948 3304 1.197812 GCAATCCCCCTTCTGCATTT 58.802 50.000 0.00 0.00 34.87 2.32
1988 3376 4.657824 AGCCGGTGTCCGTTGTCG 62.658 66.667 1.90 0.00 46.80 4.35
2089 3477 3.716006 GACGACGACGACGACCCA 61.716 66.667 25.15 0.00 42.66 4.51
2161 3550 0.251653 AGTCCCACCTCGCTAGTTGA 60.252 55.000 0.00 0.00 0.00 3.18
2162 3551 1.471119 TAGTCCCACCTCGCTAGTTG 58.529 55.000 0.00 0.00 0.00 3.16
2163 3552 2.226962 TTAGTCCCACCTCGCTAGTT 57.773 50.000 0.00 0.00 0.00 2.24
2164 3553 1.823610 GTTTAGTCCCACCTCGCTAGT 59.176 52.381 0.00 0.00 0.00 2.57
2165 3554 2.099427 GAGTTTAGTCCCACCTCGCTAG 59.901 54.545 0.00 0.00 0.00 3.42
2166 3555 2.097825 GAGTTTAGTCCCACCTCGCTA 58.902 52.381 0.00 0.00 0.00 4.26
2167 3556 0.896226 GAGTTTAGTCCCACCTCGCT 59.104 55.000 0.00 0.00 0.00 4.93
2168 3557 0.108281 GGAGTTTAGTCCCACCTCGC 60.108 60.000 0.00 0.00 0.00 5.03
2176 3565 1.061546 TGGTGGTGGGAGTTTAGTCC 58.938 55.000 0.00 0.00 35.64 3.85
2177 3566 1.607251 CGTGGTGGTGGGAGTTTAGTC 60.607 57.143 0.00 0.00 0.00 2.59
2178 3567 0.395312 CGTGGTGGTGGGAGTTTAGT 59.605 55.000 0.00 0.00 0.00 2.24
2179 3568 0.953960 GCGTGGTGGTGGGAGTTTAG 60.954 60.000 0.00 0.00 0.00 1.85
2180 3569 1.071814 GCGTGGTGGTGGGAGTTTA 59.928 57.895 0.00 0.00 0.00 2.01
2181 3570 2.203294 GCGTGGTGGTGGGAGTTT 60.203 61.111 0.00 0.00 0.00 2.66
2182 3571 4.265056 GGCGTGGTGGTGGGAGTT 62.265 66.667 0.00 0.00 0.00 3.01
2202 3591 4.627801 TACCAAAGGCCGCGCACA 62.628 61.111 8.75 0.00 0.00 4.57
2203 3592 4.097863 GTACCAAAGGCCGCGCAC 62.098 66.667 8.75 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.