Multiple sequence alignment - TraesCS1D01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G400100 chr1D 100.000 2507 0 0 1 2507 466479123 466481629 0.000000e+00 4630.0
1 TraesCS1D01G400100 chr1D 93.351 376 21 4 1 374 464380156 464379783 1.010000e-153 553.0
2 TraesCS1D01G400100 chr1A 89.641 1419 84 33 372 1745 558590464 558591864 0.000000e+00 1748.0
3 TraesCS1D01G400100 chr1A 86.538 208 10 7 2101 2294 558592312 558592515 1.950000e-51 213.0
4 TraesCS1D01G400100 chr1A 80.667 150 24 3 372 518 41831091 41830944 7.330000e-21 111.0
5 TraesCS1D01G400100 chr1B 89.702 1107 50 28 610 1675 643245718 643246801 0.000000e+00 1354.0
6 TraesCS1D01G400100 chr1B 90.930 430 21 7 2092 2507 643247054 643247479 1.680000e-156 562.0
7 TraesCS1D01G400100 chr1B 93.085 376 23 2 1 375 571977480 571977107 4.710000e-152 547.0
8 TraesCS1D01G400100 chr1B 88.462 208 18 3 1793 1995 643246846 643247052 1.930000e-61 246.0
9 TraesCS1D01G400100 chr1B 96.117 103 3 1 1989 2091 48923632 48923733 1.540000e-37 167.0
10 TraesCS1D01G400100 chr4A 93.473 383 19 6 1 380 675951839 675951460 4.680000e-157 564.0
11 TraesCS1D01G400100 chr4A 92.895 380 22 4 1 378 659681600 659681224 4.710000e-152 547.0
12 TraesCS1D01G400100 chr4A 95.192 104 5 0 1995 2098 650040978 650040875 5.550000e-37 165.0
13 TraesCS1D01G400100 chr3B 93.634 377 19 4 1 375 89378611 89378238 2.180000e-155 558.0
14 TraesCS1D01G400100 chr3B 93.404 379 22 3 1 376 380509401 380509023 2.180000e-155 558.0
15 TraesCS1D01G400100 chr2B 93.651 378 16 7 1 373 792126187 792126561 2.180000e-155 558.0
16 TraesCS1D01G400100 chr2B 93.404 379 20 5 1 377 96107673 96108048 7.830000e-155 556.0
17 TraesCS1D01G400100 chr2B 83.459 133 19 2 386 518 374076189 374076318 1.220000e-23 121.0
18 TraesCS1D01G400100 chr6A 92.689 383 21 6 1 378 371704934 371705314 1.700000e-151 545.0
19 TraesCS1D01G400100 chr6A 95.192 104 4 1 1989 2091 23355181 23355078 2.000000e-36 163.0
20 TraesCS1D01G400100 chr6A 94.444 36 1 1 1890 1924 506401396 506401361 1.000000e-03 54.7
21 TraesCS1D01G400100 chr4B 96.262 107 3 1 1987 2092 216815103 216814997 9.220000e-40 174.0
22 TraesCS1D01G400100 chr4B 85.484 124 16 1 396 519 649832052 649831931 7.280000e-26 128.0
23 TraesCS1D01G400100 chr7D 95.327 107 3 2 1995 2100 407716630 407716525 4.290000e-38 169.0
24 TraesCS1D01G400100 chr7D 95.238 105 5 0 1995 2099 489010687 489010791 1.540000e-37 167.0
25 TraesCS1D01G400100 chr7D 94.393 107 4 2 1989 2094 162222204 162222309 2.000000e-36 163.0
26 TraesCS1D01G400100 chr5D 96.078 102 4 0 1993 2094 262838793 262838692 1.540000e-37 167.0
27 TraesCS1D01G400100 chr5D 100.000 31 0 0 1888 1918 367429548 367429578 9.690000e-05 58.4
28 TraesCS1D01G400100 chr7A 87.943 141 15 1 379 519 80161698 80161560 5.550000e-37 165.0
29 TraesCS1D01G400100 chr3D 93.750 112 4 3 1988 2098 290583814 290583923 5.550000e-37 165.0
30 TraesCS1D01G400100 chr3D 85.106 141 19 2 379 519 579275733 579275595 2.600000e-30 143.0
31 TraesCS1D01G400100 chr2A 85.621 153 14 4 372 522 733874128 733873982 1.200000e-33 154.0
32 TraesCS1D01G400100 chr5A 84.354 147 21 1 373 519 688608879 688608735 2.600000e-30 143.0
33 TraesCS1D01G400100 chr7B 83.459 133 16 5 389 520 131748454 131748327 4.380000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G400100 chr1D 466479123 466481629 2506 False 4630.000000 4630 100.0000 1 2507 1 chr1D.!!$F1 2506
1 TraesCS1D01G400100 chr1A 558590464 558592515 2051 False 980.500000 1748 88.0895 372 2294 2 chr1A.!!$F1 1922
2 TraesCS1D01G400100 chr1B 643245718 643247479 1761 False 720.666667 1354 89.6980 610 2507 3 chr1B.!!$F2 1897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.107848 ACTTAAATCCGGACTGCGGG 60.108 55.0 6.12 0.0 35.92 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2486 0.610687 GACCTCTTCCAGACCCTGTG 59.389 60.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 8.900983 TTCATATATCACATGTTCAAATCGGA 57.099 30.769 0.00 0.00 0.00 4.55
64 65 8.538409 TCATATATCACATGTTCAAATCGGAG 57.462 34.615 0.00 0.00 0.00 4.63
65 66 8.150296 TCATATATCACATGTTCAAATCGGAGT 58.850 33.333 0.00 0.00 0.00 3.85
66 67 8.777413 CATATATCACATGTTCAAATCGGAGTT 58.223 33.333 0.00 0.00 0.00 3.01
67 68 9.996554 ATATATCACATGTTCAAATCGGAGTTA 57.003 29.630 0.00 0.00 0.00 2.24
68 69 5.856126 TCACATGTTCAAATCGGAGTTAC 57.144 39.130 0.00 0.00 0.00 2.50
69 70 4.387559 TCACATGTTCAAATCGGAGTTACG 59.612 41.667 0.00 0.00 0.00 3.18
84 85 8.583810 TCGGAGTTACGATTTAAAAGATATGG 57.416 34.615 0.00 0.00 38.06 2.74
85 86 8.415553 TCGGAGTTACGATTTAAAAGATATGGA 58.584 33.333 0.00 0.00 38.06 3.41
86 87 9.204570 CGGAGTTACGATTTAAAAGATATGGAT 57.795 33.333 0.00 0.00 35.47 3.41
123 124 9.787532 AACATTGTTTGACTTAAATATGATCCG 57.212 29.630 0.00 0.00 32.25 4.18
124 125 7.915397 ACATTGTTTGACTTAAATATGATCCGC 59.085 33.333 0.00 0.00 32.25 5.54
125 126 6.043327 TGTTTGACTTAAATATGATCCGCG 57.957 37.500 0.00 0.00 0.00 6.46
126 127 5.007234 TGTTTGACTTAAATATGATCCGCGG 59.993 40.000 22.12 22.12 0.00 6.46
127 128 4.594123 TGACTTAAATATGATCCGCGGA 57.406 40.909 33.12 33.12 0.00 5.54
128 129 5.147330 TGACTTAAATATGATCCGCGGAT 57.853 39.130 39.64 39.64 37.59 4.18
129 130 4.929211 TGACTTAAATATGATCCGCGGATG 59.071 41.667 43.46 26.82 34.60 3.51
130 131 5.147330 ACTTAAATATGATCCGCGGATGA 57.853 39.130 43.46 36.54 34.60 2.92
131 132 5.547465 ACTTAAATATGATCCGCGGATGAA 58.453 37.500 43.46 30.43 34.60 2.57
132 133 6.173339 ACTTAAATATGATCCGCGGATGAAT 58.827 36.000 43.46 33.85 34.60 2.57
133 134 6.655003 ACTTAAATATGATCCGCGGATGAATT 59.345 34.615 43.46 31.51 34.60 2.17
134 135 7.822334 ACTTAAATATGATCCGCGGATGAATTA 59.178 33.333 43.46 28.95 34.60 1.40
135 136 6.422776 AAATATGATCCGCGGATGAATTAC 57.577 37.500 43.46 27.45 34.60 1.89
136 137 2.163818 TGATCCGCGGATGAATTACC 57.836 50.000 43.46 26.73 34.60 2.85
137 138 1.691976 TGATCCGCGGATGAATTACCT 59.308 47.619 43.46 19.25 34.60 3.08
138 139 2.894765 TGATCCGCGGATGAATTACCTA 59.105 45.455 43.46 11.76 34.60 3.08
139 140 3.322541 TGATCCGCGGATGAATTACCTAA 59.677 43.478 43.46 11.52 34.60 2.69
140 141 3.823281 TCCGCGGATGAATTACCTAAA 57.177 42.857 27.28 0.00 0.00 1.85
141 142 4.345859 TCCGCGGATGAATTACCTAAAT 57.654 40.909 27.28 0.00 0.00 1.40
142 143 4.312443 TCCGCGGATGAATTACCTAAATC 58.688 43.478 27.28 0.00 0.00 2.17
143 144 4.062293 CCGCGGATGAATTACCTAAATCA 58.938 43.478 24.07 0.00 0.00 2.57
144 145 4.695455 CCGCGGATGAATTACCTAAATCAT 59.305 41.667 24.07 0.00 0.00 2.45
145 146 5.163854 CCGCGGATGAATTACCTAAATCATC 60.164 44.000 24.07 12.11 34.62 2.92
146 147 5.408299 CGCGGATGAATTACCTAAATCATCA 59.592 40.000 18.48 0.00 35.74 3.07
147 148 6.401474 CGCGGATGAATTACCTAAATCATCAG 60.401 42.308 18.48 16.34 35.74 2.90
148 149 6.128172 GCGGATGAATTACCTAAATCATCAGG 60.128 42.308 18.48 13.01 35.74 3.86
149 150 6.372659 CGGATGAATTACCTAAATCATCAGGG 59.627 42.308 18.48 8.43 35.74 4.45
150 151 6.660949 GGATGAATTACCTAAATCATCAGGGG 59.339 42.308 18.48 0.00 35.74 4.79
151 152 5.952387 TGAATTACCTAAATCATCAGGGGG 58.048 41.667 0.00 0.00 36.15 5.40
183 184 6.375945 AAAACGTAAAATAACAGTTCGGGT 57.624 33.333 0.00 0.00 0.00 5.28
184 185 4.996062 ACGTAAAATAACAGTTCGGGTG 57.004 40.909 0.00 0.00 0.00 4.61
185 186 4.379652 ACGTAAAATAACAGTTCGGGTGT 58.620 39.130 0.00 0.00 0.00 4.16
186 187 4.211794 ACGTAAAATAACAGTTCGGGTGTG 59.788 41.667 0.00 0.00 0.00 3.82
187 188 4.448395 CGTAAAATAACAGTTCGGGTGTGA 59.552 41.667 0.00 0.00 0.00 3.58
188 189 4.823790 AAAATAACAGTTCGGGTGTGAC 57.176 40.909 0.00 0.00 0.00 3.67
189 190 3.764237 AATAACAGTTCGGGTGTGACT 57.236 42.857 0.00 0.00 0.00 3.41
190 191 3.764237 ATAACAGTTCGGGTGTGACTT 57.236 42.857 0.00 0.00 0.00 3.01
191 192 4.877378 ATAACAGTTCGGGTGTGACTTA 57.123 40.909 0.00 0.00 0.00 2.24
192 193 3.547054 AACAGTTCGGGTGTGACTTAA 57.453 42.857 0.00 0.00 0.00 1.85
193 194 3.547054 ACAGTTCGGGTGTGACTTAAA 57.453 42.857 0.00 0.00 0.00 1.52
194 195 4.081322 ACAGTTCGGGTGTGACTTAAAT 57.919 40.909 0.00 0.00 0.00 1.40
195 196 4.062991 ACAGTTCGGGTGTGACTTAAATC 58.937 43.478 0.00 0.00 0.00 2.17
196 197 3.435671 CAGTTCGGGTGTGACTTAAATCC 59.564 47.826 0.00 0.00 0.00 3.01
197 198 2.373540 TCGGGTGTGACTTAAATCCG 57.626 50.000 0.00 0.00 37.61 4.18
198 199 1.066716 TCGGGTGTGACTTAAATCCGG 60.067 52.381 0.00 0.00 36.99 5.14
199 200 1.066716 CGGGTGTGACTTAAATCCGGA 60.067 52.381 6.61 6.61 33.27 5.14
200 201 2.353323 GGGTGTGACTTAAATCCGGAC 58.647 52.381 6.12 0.00 0.00 4.79
201 202 2.027469 GGGTGTGACTTAAATCCGGACT 60.027 50.000 6.12 0.00 0.00 3.85
202 203 3.000727 GGTGTGACTTAAATCCGGACTG 58.999 50.000 6.12 0.00 0.00 3.51
203 204 2.415512 GTGTGACTTAAATCCGGACTGC 59.584 50.000 6.12 0.00 0.00 4.40
204 205 1.659098 GTGACTTAAATCCGGACTGCG 59.341 52.381 6.12 0.00 0.00 5.18
205 206 1.287425 GACTTAAATCCGGACTGCGG 58.713 55.000 6.12 1.83 0.00 5.69
206 207 0.107848 ACTTAAATCCGGACTGCGGG 60.108 55.000 6.12 0.00 35.92 6.13
207 208 0.107848 CTTAAATCCGGACTGCGGGT 60.108 55.000 6.12 0.00 36.04 5.28
208 209 0.325602 TTAAATCCGGACTGCGGGTT 59.674 50.000 6.12 5.26 36.04 4.11
209 210 0.391927 TAAATCCGGACTGCGGGTTG 60.392 55.000 6.12 0.00 36.04 3.77
210 211 2.119484 AAATCCGGACTGCGGGTTGA 62.119 55.000 6.12 0.00 36.04 3.18
211 212 1.910580 AATCCGGACTGCGGGTTGAT 61.911 55.000 6.12 0.00 36.04 2.57
212 213 1.910580 ATCCGGACTGCGGGTTGATT 61.911 55.000 6.12 0.00 36.04 2.57
213 214 1.674322 CCGGACTGCGGGTTGATTT 60.674 57.895 0.00 0.00 0.00 2.17
214 215 1.644786 CCGGACTGCGGGTTGATTTC 61.645 60.000 0.00 0.00 0.00 2.17
215 216 0.953471 CGGACTGCGGGTTGATTTCA 60.953 55.000 0.00 0.00 0.00 2.69
216 217 0.804989 GGACTGCGGGTTGATTTCAG 59.195 55.000 0.00 0.00 0.00 3.02
217 218 0.169009 GACTGCGGGTTGATTTCAGC 59.831 55.000 0.00 0.00 0.00 4.26
218 219 0.537143 ACTGCGGGTTGATTTCAGCA 60.537 50.000 0.00 0.00 0.00 4.41
219 220 0.597568 CTGCGGGTTGATTTCAGCAA 59.402 50.000 0.00 0.00 34.04 3.91
220 221 1.000385 CTGCGGGTTGATTTCAGCAAA 60.000 47.619 0.00 0.00 34.04 3.68
221 222 1.410517 TGCGGGTTGATTTCAGCAAAA 59.589 42.857 0.00 0.00 0.00 2.44
222 223 1.792367 GCGGGTTGATTTCAGCAAAAC 59.208 47.619 0.00 0.00 0.00 2.43
223 224 2.801342 GCGGGTTGATTTCAGCAAAACA 60.801 45.455 0.00 0.00 0.00 2.83
224 225 2.794350 CGGGTTGATTTCAGCAAAACAC 59.206 45.455 0.00 0.00 0.00 3.32
225 226 3.736433 CGGGTTGATTTCAGCAAAACACA 60.736 43.478 0.00 0.00 0.00 3.72
226 227 4.379652 GGGTTGATTTCAGCAAAACACAT 58.620 39.130 0.00 0.00 0.00 3.21
227 228 4.211794 GGGTTGATTTCAGCAAAACACATG 59.788 41.667 0.00 0.00 0.00 3.21
228 229 4.211794 GGTTGATTTCAGCAAAACACATGG 59.788 41.667 0.00 0.00 0.00 3.66
229 230 4.933505 TGATTTCAGCAAAACACATGGA 57.066 36.364 0.00 0.00 0.00 3.41
230 231 4.619973 TGATTTCAGCAAAACACATGGAC 58.380 39.130 0.00 0.00 0.00 4.02
231 232 4.341806 TGATTTCAGCAAAACACATGGACT 59.658 37.500 0.00 0.00 0.00 3.85
232 233 4.734398 TTTCAGCAAAACACATGGACTT 57.266 36.364 0.00 0.00 0.00 3.01
233 234 4.734398 TTCAGCAAAACACATGGACTTT 57.266 36.364 0.00 0.00 0.00 2.66
234 235 4.734398 TCAGCAAAACACATGGACTTTT 57.266 36.364 0.00 0.00 0.00 2.27
235 236 4.431809 TCAGCAAAACACATGGACTTTTG 58.568 39.130 15.29 15.29 37.75 2.44
236 237 4.081752 TCAGCAAAACACATGGACTTTTGT 60.082 37.500 18.39 3.44 37.26 2.83
237 238 4.033129 CAGCAAAACACATGGACTTTTGTG 59.967 41.667 18.39 13.78 46.76 3.33
248 249 9.689976 CACATGGACTTTTGTGTAAAATATGAA 57.310 29.630 0.00 0.00 38.69 2.57
284 285 3.982576 AACTTAAAACAAGACTGCGGG 57.017 42.857 0.00 0.00 0.00 6.13
285 286 2.927028 ACTTAAAACAAGACTGCGGGT 58.073 42.857 0.00 0.00 0.00 5.28
286 287 3.284617 ACTTAAAACAAGACTGCGGGTT 58.715 40.909 0.00 0.00 0.00 4.11
287 288 3.066203 ACTTAAAACAAGACTGCGGGTTG 59.934 43.478 8.05 8.05 0.00 3.77
288 289 1.757682 AAAACAAGACTGCGGGTTGA 58.242 45.000 14.90 0.00 0.00 3.18
289 290 1.757682 AAACAAGACTGCGGGTTGAA 58.242 45.000 14.90 0.00 0.00 2.69
290 291 1.981256 AACAAGACTGCGGGTTGAAT 58.019 45.000 14.90 3.08 0.00 2.57
291 292 1.981256 ACAAGACTGCGGGTTGAATT 58.019 45.000 14.90 0.00 0.00 2.17
292 293 1.880027 ACAAGACTGCGGGTTGAATTC 59.120 47.619 14.90 0.00 0.00 2.17
293 294 2.154462 CAAGACTGCGGGTTGAATTCT 58.846 47.619 7.05 0.00 0.00 2.40
294 295 2.100605 AGACTGCGGGTTGAATTCTC 57.899 50.000 7.05 0.06 0.00 2.87
295 296 1.625818 AGACTGCGGGTTGAATTCTCT 59.374 47.619 7.05 0.00 0.00 3.10
296 297 1.734465 GACTGCGGGTTGAATTCTCTG 59.266 52.381 7.05 3.16 0.00 3.35
297 298 1.347707 ACTGCGGGTTGAATTCTCTGA 59.652 47.619 7.05 0.00 0.00 3.27
298 299 2.224523 ACTGCGGGTTGAATTCTCTGAA 60.225 45.455 7.05 0.00 0.00 3.02
299 300 2.813754 CTGCGGGTTGAATTCTCTGAAA 59.186 45.455 7.05 0.00 0.00 2.69
300 301 3.420893 TGCGGGTTGAATTCTCTGAAAT 58.579 40.909 7.05 0.00 0.00 2.17
301 302 4.584874 TGCGGGTTGAATTCTCTGAAATA 58.415 39.130 7.05 0.00 0.00 1.40
302 303 4.635765 TGCGGGTTGAATTCTCTGAAATAG 59.364 41.667 7.05 0.00 0.00 1.73
303 304 4.876107 GCGGGTTGAATTCTCTGAAATAGA 59.124 41.667 7.05 0.00 0.00 1.98
316 317 6.935240 TCTGAAATAGAGGGACTTTTCTGA 57.065 37.500 0.00 0.00 41.55 3.27
317 318 7.316393 TCTGAAATAGAGGGACTTTTCTGAA 57.684 36.000 0.00 0.00 41.55 3.02
318 319 7.745717 TCTGAAATAGAGGGACTTTTCTGAAA 58.254 34.615 0.00 0.00 41.55 2.69
319 320 8.217799 TCTGAAATAGAGGGACTTTTCTGAAAA 58.782 33.333 14.31 14.31 41.55 2.29
320 321 8.760980 TGAAATAGAGGGACTTTTCTGAAAAA 57.239 30.769 15.67 0.31 41.55 1.94
321 322 9.367160 TGAAATAGAGGGACTTTTCTGAAAAAT 57.633 29.630 15.67 6.78 41.55 1.82
322 323 9.631452 GAAATAGAGGGACTTTTCTGAAAAATG 57.369 33.333 15.67 8.43 41.55 2.32
323 324 7.709149 ATAGAGGGACTTTTCTGAAAAATGG 57.291 36.000 15.67 7.80 41.55 3.16
324 325 4.281941 AGAGGGACTTTTCTGAAAAATGGC 59.718 41.667 15.67 7.99 41.55 4.40
325 326 3.966665 AGGGACTTTTCTGAAAAATGGCA 59.033 39.130 15.67 0.00 34.00 4.92
326 327 4.594491 AGGGACTTTTCTGAAAAATGGCAT 59.406 37.500 15.67 0.00 34.00 4.40
327 328 4.692155 GGGACTTTTCTGAAAAATGGCATG 59.308 41.667 15.67 5.91 34.00 4.06
328 329 5.511202 GGGACTTTTCTGAAAAATGGCATGA 60.511 40.000 15.67 0.00 34.00 3.07
329 330 5.406477 GGACTTTTCTGAAAAATGGCATGAC 59.594 40.000 15.67 0.00 34.00 3.06
330 331 4.984161 ACTTTTCTGAAAAATGGCATGACG 59.016 37.500 15.67 4.03 34.00 4.35
331 332 3.574284 TTCTGAAAAATGGCATGACGG 57.426 42.857 0.00 0.00 0.00 4.79
332 333 2.789213 TCTGAAAAATGGCATGACGGA 58.211 42.857 0.00 0.99 0.00 4.69
333 334 2.487762 TCTGAAAAATGGCATGACGGAC 59.512 45.455 0.00 0.00 0.00 4.79
334 335 1.198867 TGAAAAATGGCATGACGGACG 59.801 47.619 0.00 0.00 0.00 4.79
335 336 1.466950 GAAAAATGGCATGACGGACGA 59.533 47.619 0.00 0.00 0.00 4.20
336 337 1.529226 AAAATGGCATGACGGACGAA 58.471 45.000 0.00 0.00 0.00 3.85
337 338 1.529226 AAATGGCATGACGGACGAAA 58.471 45.000 0.00 0.00 0.00 3.46
338 339 1.529226 AATGGCATGACGGACGAAAA 58.471 45.000 0.00 0.00 0.00 2.29
339 340 1.529226 ATGGCATGACGGACGAAAAA 58.471 45.000 0.00 0.00 0.00 1.94
366 367 9.709387 AACCCAACTTGCTTTATTATATTAGGT 57.291 29.630 0.00 0.00 0.00 3.08
390 391 8.285394 GGTAAAGATATGTTGTGTGCATAGATG 58.715 37.037 0.00 0.00 33.05 2.90
393 394 8.962884 AAGATATGTTGTGTGCATAGATGTTA 57.037 30.769 0.00 0.00 33.05 2.41
427 428 2.600420 CTGCACGTACTCACATGCTTAG 59.400 50.000 0.00 0.00 38.90 2.18
436 437 3.181475 ACTCACATGCTTAGGTATCGGTG 60.181 47.826 0.00 0.00 0.00 4.94
450 451 4.923871 GGTATCGGTGTATGAGTTGCATAG 59.076 45.833 0.00 0.00 40.04 2.23
451 452 4.672587 ATCGGTGTATGAGTTGCATAGT 57.327 40.909 0.00 0.00 40.04 2.12
452 453 3.780902 TCGGTGTATGAGTTGCATAGTG 58.219 45.455 0.00 0.00 40.04 2.74
453 454 3.194755 TCGGTGTATGAGTTGCATAGTGT 59.805 43.478 0.00 0.00 40.04 3.55
454 455 3.306973 CGGTGTATGAGTTGCATAGTGTG 59.693 47.826 0.00 0.00 40.04 3.82
455 456 4.503910 GGTGTATGAGTTGCATAGTGTGA 58.496 43.478 0.00 0.00 40.04 3.58
456 457 5.118990 GGTGTATGAGTTGCATAGTGTGAT 58.881 41.667 0.00 0.00 40.04 3.06
457 458 5.586243 GGTGTATGAGTTGCATAGTGTGATT 59.414 40.000 0.00 0.00 40.04 2.57
458 459 6.457392 GGTGTATGAGTTGCATAGTGTGATTG 60.457 42.308 0.00 0.00 40.04 2.67
550 551 2.260434 CCGGCCGTATGGGTATCG 59.740 66.667 26.12 0.00 38.44 2.92
568 569 0.584396 CGCGTTGTGTTGGTGTACAT 59.416 50.000 0.00 0.00 0.00 2.29
711 712 2.298610 CCCACAGTATCTCTACGAGCA 58.701 52.381 0.00 0.00 32.82 4.26
759 765 1.439644 GCGAGATCTCCTCCACCAC 59.560 63.158 17.13 0.00 38.71 4.16
793 799 2.927856 ATGTCACCTGGCCACCGA 60.928 61.111 0.00 0.00 0.00 4.69
856 862 2.844839 ACTCCCTATGGGCCTCGC 60.845 66.667 4.53 0.00 43.94 5.03
857 863 2.525381 CTCCCTATGGGCCTCGCT 60.525 66.667 4.53 0.00 43.94 4.93
859 865 2.844362 CCCTATGGGCCTCGCTCA 60.844 66.667 4.53 0.00 45.75 4.26
865 871 4.292178 GGGCCTCGCTCATCTCCG 62.292 72.222 0.84 0.00 0.00 4.63
866 872 3.219928 GGCCTCGCTCATCTCCGA 61.220 66.667 0.00 0.00 0.00 4.55
869 875 2.725008 CTCGCTCATCTCCGACCC 59.275 66.667 0.00 0.00 0.00 4.46
870 876 3.187699 CTCGCTCATCTCCGACCCG 62.188 68.421 0.00 0.00 0.00 5.28
871 877 4.933064 CGCTCATCTCCGACCCGC 62.933 72.222 0.00 0.00 0.00 6.13
872 878 4.933064 GCTCATCTCCGACCCGCG 62.933 72.222 0.00 0.00 40.47 6.46
995 1007 1.467875 CTGTATACGCACAGCTCGAC 58.532 55.000 0.00 0.00 39.54 4.20
1136 1155 3.605486 CGCAGGTACTTAACACGACTTAC 59.395 47.826 0.00 0.00 34.60 2.34
1145 1169 5.682862 ACTTAACACGACTTACTAACACACG 59.317 40.000 0.00 0.00 0.00 4.49
1146 1170 3.698029 ACACGACTTACTAACACACGT 57.302 42.857 0.00 0.00 0.00 4.49
1147 1171 4.811555 ACACGACTTACTAACACACGTA 57.188 40.909 0.00 0.00 0.00 3.57
1149 1173 3.908382 CACGACTTACTAACACACGTACC 59.092 47.826 0.00 0.00 0.00 3.34
1153 1184 5.391310 CGACTTACTAACACACGTACCATCT 60.391 44.000 0.00 0.00 0.00 2.90
1165 1196 3.954904 ACGTACCATCTAGAGCAACAGAT 59.045 43.478 0.00 0.00 31.58 2.90
1510 1543 1.261619 CACGCGGCAAGATCTAAATCC 59.738 52.381 12.47 0.00 31.78 3.01
1511 1544 0.868406 CGCGGCAAGATCTAAATCCC 59.132 55.000 0.00 0.00 31.78 3.85
1512 1545 1.810031 CGCGGCAAGATCTAAATCCCA 60.810 52.381 0.00 0.00 31.78 4.37
1513 1546 2.508526 GCGGCAAGATCTAAATCCCAT 58.491 47.619 0.00 0.00 31.78 4.00
1522 1566 7.516452 CAAGATCTAAATCCCATCCTTCTTCT 58.484 38.462 0.00 0.00 31.78 2.85
1529 1573 1.139853 CCCATCCTTCTTCTTCCCTCG 59.860 57.143 0.00 0.00 0.00 4.63
1564 1609 4.444022 GCTTGTGTACCATGGATCTCATCT 60.444 45.833 21.47 0.00 32.92 2.90
1565 1610 4.677673 TGTGTACCATGGATCTCATCTG 57.322 45.455 21.47 0.00 32.92 2.90
1566 1611 4.289245 TGTGTACCATGGATCTCATCTGA 58.711 43.478 21.47 0.00 32.92 3.27
1569 1614 5.245751 GTGTACCATGGATCTCATCTGATCT 59.754 44.000 21.47 0.00 41.72 2.75
1570 1615 4.893829 ACCATGGATCTCATCTGATCTG 57.106 45.455 21.47 0.00 41.72 2.90
1571 1616 4.490706 ACCATGGATCTCATCTGATCTGA 58.509 43.478 21.47 4.63 41.72 3.27
1572 1617 5.095097 ACCATGGATCTCATCTGATCTGAT 58.905 41.667 21.47 9.15 41.72 2.90
1573 1618 5.046231 ACCATGGATCTCATCTGATCTGATG 60.046 44.000 27.84 27.84 43.66 3.07
1574 1619 5.423886 CATGGATCTCATCTGATCTGATGG 58.576 45.833 30.84 23.72 42.82 3.51
1575 1620 4.748701 TGGATCTCATCTGATCTGATGGA 58.251 43.478 30.84 26.66 42.82 3.41
1576 1621 5.342866 TGGATCTCATCTGATCTGATGGAT 58.657 41.667 30.84 28.86 42.82 3.41
1577 1622 7.900440 CATGGATCTCATCTGATCTGATGGATC 60.900 44.444 32.84 32.84 42.40 3.36
1593 1649 4.767000 TGGATCTCCCCTATCTATGTGT 57.233 45.455 0.00 0.00 34.29 3.72
1611 1667 6.653273 ATGTGTTCTGTTGATACTTGATCG 57.347 37.500 0.00 0.00 37.38 3.69
1683 1748 7.923888 TGCAATTACTAGATCATTTGCTCTTC 58.076 34.615 0.00 0.00 39.98 2.87
1686 1751 8.986847 CAATTACTAGATCATTTGCTCTTCGAT 58.013 33.333 0.00 0.00 0.00 3.59
1693 1758 3.943381 TCATTTGCTCTTCGATGATTGCT 59.057 39.130 11.97 0.00 0.00 3.91
1695 1760 4.864916 TTTGCTCTTCGATGATTGCTAC 57.135 40.909 11.97 0.00 0.00 3.58
1732 1800 2.297033 CCATGTTTTTGCTGTACTGGCT 59.703 45.455 11.40 0.00 0.00 4.75
1745 1813 6.488683 TGCTGTACTGGCTGTTTAAATTACTT 59.511 34.615 1.31 0.00 0.00 2.24
1746 1814 6.801862 GCTGTACTGGCTGTTTAAATTACTTG 59.198 38.462 1.31 0.00 0.00 3.16
1748 1816 7.867752 TGTACTGGCTGTTTAAATTACTTGTC 58.132 34.615 1.31 0.00 0.00 3.18
1749 1817 7.717875 TGTACTGGCTGTTTAAATTACTTGTCT 59.282 33.333 1.31 0.00 0.00 3.41
1750 1818 9.211485 GTACTGGCTGTTTAAATTACTTGTCTA 57.789 33.333 1.31 0.00 0.00 2.59
1751 1819 8.324163 ACTGGCTGTTTAAATTACTTGTCTAG 57.676 34.615 0.00 0.00 0.00 2.43
1752 1820 8.154856 ACTGGCTGTTTAAATTACTTGTCTAGA 58.845 33.333 0.00 0.00 0.00 2.43
1769 1897 1.043673 AGAGGGTACAGTGCCGATCC 61.044 60.000 0.98 0.00 0.00 3.36
1773 1901 1.000955 GGGTACAGTGCCGATCCATAG 59.999 57.143 0.98 0.00 0.00 2.23
1784 1912 2.706190 CCGATCCATAGTTCTTCCCCTT 59.294 50.000 0.00 0.00 0.00 3.95
1785 1913 3.136626 CCGATCCATAGTTCTTCCCCTTT 59.863 47.826 0.00 0.00 0.00 3.11
1787 1915 4.464947 GATCCATAGTTCTTCCCCTTTGG 58.535 47.826 0.00 0.00 32.85 3.28
1790 1918 4.107311 TCCATAGTTCTTCCCCTTTGGTTT 59.893 41.667 0.00 0.00 33.22 3.27
1791 1919 5.313772 TCCATAGTTCTTCCCCTTTGGTTTA 59.686 40.000 0.00 0.00 33.22 2.01
1870 2148 0.533491 TGCACACGTACATACTCCCC 59.467 55.000 0.00 0.00 0.00 4.81
1871 2149 0.179092 GCACACGTACATACTCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
1872 2150 0.101759 CACACGTACATACTCCCCCG 59.898 60.000 0.00 0.00 0.00 5.73
1877 2155 1.829533 TACATACTCCCCCGTCCGC 60.830 63.158 0.00 0.00 0.00 5.54
1918 2199 6.552859 TTCTGCGACAAATAATTCAGAACA 57.447 33.333 0.00 0.00 36.15 3.18
1923 2204 5.351465 GCGACAAATAATTCAGAACAGAGGA 59.649 40.000 0.00 0.00 0.00 3.71
1925 2206 7.414540 GCGACAAATAATTCAGAACAGAGGAAT 60.415 37.037 0.00 0.00 32.90 3.01
1937 2218 9.582431 TCAGAACAGAGGAATTATTTACTAACG 57.418 33.333 0.00 0.00 0.00 3.18
1953 2234 3.594775 CGGTTGTTGCTGCTGCCA 61.595 61.111 13.47 0.00 38.71 4.92
1995 2276 4.998672 CCCCACTTGTTTCGTTAATGTCTA 59.001 41.667 0.00 0.00 0.00 2.59
1996 2277 5.106830 CCCCACTTGTTTCGTTAATGTCTAC 60.107 44.000 0.00 0.00 0.00 2.59
1997 2278 5.699458 CCCACTTGTTTCGTTAATGTCTACT 59.301 40.000 0.00 0.00 0.00 2.57
1998 2279 6.128634 CCCACTTGTTTCGTTAATGTCTACTC 60.129 42.308 0.00 0.00 0.00 2.59
1999 2280 6.128634 CCACTTGTTTCGTTAATGTCTACTCC 60.129 42.308 0.00 0.00 0.00 3.85
2000 2281 5.930569 ACTTGTTTCGTTAATGTCTACTCCC 59.069 40.000 0.00 0.00 0.00 4.30
2001 2282 5.733620 TGTTTCGTTAATGTCTACTCCCT 57.266 39.130 0.00 0.00 0.00 4.20
2002 2283 5.717119 TGTTTCGTTAATGTCTACTCCCTC 58.283 41.667 0.00 0.00 0.00 4.30
2003 2284 4.996788 TTCGTTAATGTCTACTCCCTCC 57.003 45.455 0.00 0.00 0.00 4.30
2004 2285 2.947652 TCGTTAATGTCTACTCCCTCCG 59.052 50.000 0.00 0.00 0.00 4.63
2005 2286 2.686915 CGTTAATGTCTACTCCCTCCGT 59.313 50.000 0.00 0.00 0.00 4.69
2006 2287 3.129988 CGTTAATGTCTACTCCCTCCGTT 59.870 47.826 0.00 0.00 0.00 4.44
2007 2288 4.381292 CGTTAATGTCTACTCCCTCCGTTT 60.381 45.833 0.00 0.00 0.00 3.60
2008 2289 3.889520 AATGTCTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
2009 2290 2.297698 TGTCTACTCCCTCCGTTTCA 57.702 50.000 0.00 0.00 0.00 2.69
2010 2291 2.600790 TGTCTACTCCCTCCGTTTCAA 58.399 47.619 0.00 0.00 0.00 2.69
2011 2292 2.967201 TGTCTACTCCCTCCGTTTCAAA 59.033 45.455 0.00 0.00 0.00 2.69
2012 2293 3.388676 TGTCTACTCCCTCCGTTTCAAAA 59.611 43.478 0.00 0.00 0.00 2.44
2013 2294 4.041198 TGTCTACTCCCTCCGTTTCAAAAT 59.959 41.667 0.00 0.00 0.00 1.82
2014 2295 5.246656 TGTCTACTCCCTCCGTTTCAAAATA 59.753 40.000 0.00 0.00 0.00 1.40
2015 2296 5.811100 GTCTACTCCCTCCGTTTCAAAATAG 59.189 44.000 0.00 0.00 0.00 1.73
2016 2297 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2017 2298 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2018 2299 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2019 2300 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2020 2301 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2021 2302 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
2022 2303 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
2023 2304 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
2024 2305 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
2025 2306 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
2026 2307 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2027 2308 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
2028 2309 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
2029 2310 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
2030 2311 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2031 2312 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2032 2313 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
2033 2314 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
2034 2315 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2035 2316 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2036 2317 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2037 2318 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2038 2319 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2039 2320 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2040 2321 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
2041 2322 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
2042 2323 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
2043 2324 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
2044 2325 7.341030 ACCCAACTTTGTACTAACTTTGTACT 58.659 34.615 12.73 0.00 40.44 2.73
2045 2326 8.485392 ACCCAACTTTGTACTAACTTTGTACTA 58.515 33.333 12.73 4.86 40.44 1.82
2046 2327 9.328845 CCCAACTTTGTACTAACTTTGTACTAA 57.671 33.333 12.73 10.75 40.44 2.24
2081 2362 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2082 2363 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2083 2364 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2084 2365 5.989477 TGAGTCATCTATTTTGGAACGGAT 58.011 37.500 0.00 0.00 0.00 4.18
2085 2366 5.817296 TGAGTCATCTATTTTGGAACGGATG 59.183 40.000 0.00 0.00 32.78 3.51
2086 2367 5.126067 AGTCATCTATTTTGGAACGGATGG 58.874 41.667 0.00 0.00 32.58 3.51
2087 2368 5.104527 AGTCATCTATTTTGGAACGGATGGA 60.105 40.000 0.00 0.00 32.58 3.41
2088 2369 5.237344 GTCATCTATTTTGGAACGGATGGAG 59.763 44.000 0.00 0.00 32.58 3.86
2089 2370 4.837093 TCTATTTTGGAACGGATGGAGT 57.163 40.909 0.00 0.00 0.00 3.85
2090 2371 5.943349 TCTATTTTGGAACGGATGGAGTA 57.057 39.130 0.00 0.00 0.00 2.59
2094 2375 6.937436 ATTTTGGAACGGATGGAGTAATAC 57.063 37.500 0.00 0.00 0.00 1.89
2116 2397 9.524496 AATACATACCATCAATCATACATTGCT 57.476 29.630 0.00 0.00 0.00 3.91
2159 2454 5.496556 TCCAACTGACATTATAACACTGGG 58.503 41.667 0.00 0.00 0.00 4.45
2191 2486 5.612276 CGCTTAACAAACATTGCATGGAAAC 60.612 40.000 2.94 0.00 33.60 2.78
2227 2522 8.412456 GGAAGAGGTCAAGGTTAACTAGTATAC 58.588 40.741 5.42 0.00 0.00 1.47
2240 2535 6.963083 AACTAGTATACAAGTGGGCTAGAG 57.037 41.667 5.50 0.00 32.64 2.43
2242 2537 6.670617 ACTAGTATACAAGTGGGCTAGAGAA 58.329 40.000 5.50 0.00 32.64 2.87
2243 2538 5.855740 AGTATACAAGTGGGCTAGAGAAC 57.144 43.478 5.50 0.00 0.00 3.01
2244 2539 5.520751 AGTATACAAGTGGGCTAGAGAACT 58.479 41.667 5.50 0.00 0.00 3.01
2260 2555 7.982354 GCTAGAGAACTACTACATGTCCATTTT 59.018 37.037 0.00 0.00 0.00 1.82
2319 2615 0.104882 TGTAGAACAGGGGGTCCACA 60.105 55.000 0.00 0.00 34.83 4.17
2347 2643 0.394762 GCACATCATCTTGGCCTCCA 60.395 55.000 3.32 0.00 0.00 3.86
2348 2644 1.753141 GCACATCATCTTGGCCTCCAT 60.753 52.381 3.32 0.00 31.53 3.41
2374 2670 0.478942 TTTCCATTGGGGGTCGAACA 59.521 50.000 1.31 0.00 37.22 3.18
2394 2690 3.840666 ACACAATGGAGATACAGACAGGT 59.159 43.478 0.00 0.00 0.00 4.00
2399 2695 1.757699 GGAGATACAGACAGGTGTCCC 59.242 57.143 6.50 0.00 45.85 4.46
2467 2763 8.186163 ACAATGCTCTGAACACATATTTACATG 58.814 33.333 0.00 0.00 0.00 3.21
2473 2769 9.577110 CTCTGAACACATATTTACATGCATTTT 57.423 29.630 0.00 0.00 0.00 1.82
2474 2770 9.356433 TCTGAACACATATTTACATGCATTTTG 57.644 29.630 0.00 0.00 0.00 2.44
2475 2771 8.476657 TGAACACATATTTACATGCATTTTGG 57.523 30.769 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.336171 TCCGATTTGAACATGTGATATATGAAA 57.664 29.630 0.00 0.00 0.00 2.69
38 39 8.900983 TCCGATTTGAACATGTGATATATGAA 57.099 30.769 0.00 0.00 0.00 2.57
39 40 8.150296 ACTCCGATTTGAACATGTGATATATGA 58.850 33.333 0.00 0.00 0.00 2.15
40 41 8.315391 ACTCCGATTTGAACATGTGATATATG 57.685 34.615 0.00 0.00 0.00 1.78
41 42 8.908786 AACTCCGATTTGAACATGTGATATAT 57.091 30.769 0.00 0.00 0.00 0.86
42 43 9.256477 GTAACTCCGATTTGAACATGTGATATA 57.744 33.333 0.00 0.00 0.00 0.86
43 44 7.042725 CGTAACTCCGATTTGAACATGTGATAT 60.043 37.037 0.00 0.00 0.00 1.63
44 45 6.254804 CGTAACTCCGATTTGAACATGTGATA 59.745 38.462 0.00 0.00 0.00 2.15
45 46 5.063438 CGTAACTCCGATTTGAACATGTGAT 59.937 40.000 0.00 0.00 0.00 3.06
46 47 4.387559 CGTAACTCCGATTTGAACATGTGA 59.612 41.667 0.00 0.00 0.00 3.58
47 48 4.387559 TCGTAACTCCGATTTGAACATGTG 59.612 41.667 0.00 0.00 30.63 3.21
48 49 4.562082 TCGTAACTCCGATTTGAACATGT 58.438 39.130 0.00 0.00 30.63 3.21
49 50 5.718649 ATCGTAACTCCGATTTGAACATG 57.281 39.130 0.00 0.00 44.72 3.21
59 60 8.415553 TCCATATCTTTTAAATCGTAACTCCGA 58.584 33.333 0.00 0.00 41.73 4.55
60 61 8.583810 TCCATATCTTTTAAATCGTAACTCCG 57.416 34.615 0.00 0.00 0.00 4.63
97 98 9.787532 CGGATCATATTTAAGTCAAACAATGTT 57.212 29.630 0.00 0.00 30.29 2.71
98 99 7.915397 GCGGATCATATTTAAGTCAAACAATGT 59.085 33.333 0.00 0.00 30.29 2.71
99 100 7.112009 CGCGGATCATATTTAAGTCAAACAATG 59.888 37.037 0.00 0.00 0.00 2.82
100 101 7.132213 CGCGGATCATATTTAAGTCAAACAAT 58.868 34.615 0.00 0.00 0.00 2.71
101 102 6.457663 CCGCGGATCATATTTAAGTCAAACAA 60.458 38.462 24.07 0.00 0.00 2.83
102 103 5.007234 CCGCGGATCATATTTAAGTCAAACA 59.993 40.000 24.07 0.00 0.00 2.83
103 104 5.235616 TCCGCGGATCATATTTAAGTCAAAC 59.764 40.000 27.28 0.00 0.00 2.93
104 105 5.361427 TCCGCGGATCATATTTAAGTCAAA 58.639 37.500 27.28 0.00 0.00 2.69
105 106 4.951254 TCCGCGGATCATATTTAAGTCAA 58.049 39.130 27.28 0.00 0.00 3.18
106 107 4.594123 TCCGCGGATCATATTTAAGTCA 57.406 40.909 27.28 0.00 0.00 3.41
107 108 5.168569 TCATCCGCGGATCATATTTAAGTC 58.831 41.667 37.10 0.00 31.62 3.01
108 109 5.147330 TCATCCGCGGATCATATTTAAGT 57.853 39.130 37.10 10.97 31.62 2.24
109 110 6.668541 ATTCATCCGCGGATCATATTTAAG 57.331 37.500 37.10 22.01 31.62 1.85
110 111 7.065324 GGTAATTCATCCGCGGATCATATTTAA 59.935 37.037 37.10 20.67 31.62 1.52
111 112 6.537301 GGTAATTCATCCGCGGATCATATTTA 59.463 38.462 37.10 24.37 31.62 1.40
112 113 5.354234 GGTAATTCATCCGCGGATCATATTT 59.646 40.000 37.10 25.24 31.62 1.40
113 114 4.876107 GGTAATTCATCCGCGGATCATATT 59.124 41.667 37.10 31.30 31.62 1.28
114 115 4.162320 AGGTAATTCATCCGCGGATCATAT 59.838 41.667 37.10 25.16 31.62 1.78
115 116 3.513912 AGGTAATTCATCCGCGGATCATA 59.486 43.478 37.10 24.11 31.62 2.15
116 117 2.303022 AGGTAATTCATCCGCGGATCAT 59.697 45.455 37.10 27.22 31.62 2.45
117 118 1.691976 AGGTAATTCATCCGCGGATCA 59.308 47.619 37.10 24.89 31.62 2.92
118 119 2.457366 AGGTAATTCATCCGCGGATC 57.543 50.000 37.10 23.80 31.62 3.36
119 120 4.345859 TTTAGGTAATTCATCCGCGGAT 57.654 40.909 34.60 34.60 34.81 4.18
120 121 3.823281 TTTAGGTAATTCATCCGCGGA 57.177 42.857 33.12 33.12 0.00 5.54
121 122 4.062293 TGATTTAGGTAATTCATCCGCGG 58.938 43.478 22.12 22.12 0.00 6.46
122 123 5.408299 TGATGATTTAGGTAATTCATCCGCG 59.592 40.000 21.13 0.00 44.43 6.46
123 124 6.128172 CCTGATGATTTAGGTAATTCATCCGC 60.128 42.308 21.13 7.76 44.43 5.54
124 125 6.372659 CCCTGATGATTTAGGTAATTCATCCG 59.627 42.308 21.13 17.34 44.43 4.18
125 126 6.660949 CCCCTGATGATTTAGGTAATTCATCC 59.339 42.308 21.13 11.11 44.43 3.51
126 127 6.660949 CCCCCTGATGATTTAGGTAATTCATC 59.339 42.308 19.02 19.02 44.83 2.92
127 128 6.555711 CCCCCTGATGATTTAGGTAATTCAT 58.444 40.000 6.77 6.77 38.35 2.57
128 129 5.952387 CCCCCTGATGATTTAGGTAATTCA 58.048 41.667 0.00 0.00 32.30 2.57
159 160 6.692249 CACCCGAACTGTTATTTTACGTTTTT 59.308 34.615 0.00 0.00 0.00 1.94
160 161 6.183360 ACACCCGAACTGTTATTTTACGTTTT 60.183 34.615 0.00 0.00 0.00 2.43
161 162 5.296531 ACACCCGAACTGTTATTTTACGTTT 59.703 36.000 0.00 0.00 0.00 3.60
162 163 4.815846 ACACCCGAACTGTTATTTTACGTT 59.184 37.500 0.00 0.00 0.00 3.99
163 164 4.211794 CACACCCGAACTGTTATTTTACGT 59.788 41.667 0.00 0.00 0.00 3.57
164 165 4.448395 TCACACCCGAACTGTTATTTTACG 59.552 41.667 0.00 0.00 0.00 3.18
165 166 5.467735 AGTCACACCCGAACTGTTATTTTAC 59.532 40.000 0.00 0.00 0.00 2.01
166 167 5.613329 AGTCACACCCGAACTGTTATTTTA 58.387 37.500 0.00 0.00 0.00 1.52
167 168 4.457466 AGTCACACCCGAACTGTTATTTT 58.543 39.130 0.00 0.00 0.00 1.82
168 169 4.081322 AGTCACACCCGAACTGTTATTT 57.919 40.909 0.00 0.00 0.00 1.40
169 170 3.764237 AGTCACACCCGAACTGTTATT 57.236 42.857 0.00 0.00 0.00 1.40
170 171 3.764237 AAGTCACACCCGAACTGTTAT 57.236 42.857 0.00 0.00 0.00 1.89
171 172 4.669206 TTAAGTCACACCCGAACTGTTA 57.331 40.909 0.00 0.00 0.00 2.41
172 173 3.547054 TTAAGTCACACCCGAACTGTT 57.453 42.857 0.00 0.00 0.00 3.16
173 174 3.547054 TTTAAGTCACACCCGAACTGT 57.453 42.857 0.00 0.00 0.00 3.55
174 175 3.435671 GGATTTAAGTCACACCCGAACTG 59.564 47.826 0.03 0.00 0.00 3.16
175 176 3.671716 GGATTTAAGTCACACCCGAACT 58.328 45.455 0.03 0.00 0.00 3.01
176 177 2.414138 CGGATTTAAGTCACACCCGAAC 59.586 50.000 0.03 0.00 37.87 3.95
177 178 2.613474 CCGGATTTAAGTCACACCCGAA 60.613 50.000 0.00 0.00 37.87 4.30
178 179 1.066716 CCGGATTTAAGTCACACCCGA 60.067 52.381 0.00 0.00 37.87 5.14
179 180 1.066716 TCCGGATTTAAGTCACACCCG 60.067 52.381 0.00 0.00 35.68 5.28
180 181 2.027469 AGTCCGGATTTAAGTCACACCC 60.027 50.000 7.81 0.00 0.00 4.61
181 182 3.000727 CAGTCCGGATTTAAGTCACACC 58.999 50.000 7.81 0.00 0.00 4.16
182 183 2.415512 GCAGTCCGGATTTAAGTCACAC 59.584 50.000 7.81 0.00 0.00 3.82
183 184 2.695359 GCAGTCCGGATTTAAGTCACA 58.305 47.619 7.81 0.00 0.00 3.58
184 185 1.659098 CGCAGTCCGGATTTAAGTCAC 59.341 52.381 7.81 0.00 0.00 3.67
185 186 2.004583 CGCAGTCCGGATTTAAGTCA 57.995 50.000 7.81 0.00 0.00 3.41
196 197 0.953471 TGAAATCAACCCGCAGTCCG 60.953 55.000 0.00 0.00 0.00 4.79
197 198 0.804989 CTGAAATCAACCCGCAGTCC 59.195 55.000 0.00 0.00 0.00 3.85
198 199 0.169009 GCTGAAATCAACCCGCAGTC 59.831 55.000 0.00 0.00 0.00 3.51
199 200 0.537143 TGCTGAAATCAACCCGCAGT 60.537 50.000 0.00 0.00 0.00 4.40
200 201 0.597568 TTGCTGAAATCAACCCGCAG 59.402 50.000 0.00 0.00 0.00 5.18
201 202 1.035923 TTTGCTGAAATCAACCCGCA 58.964 45.000 0.00 0.00 0.00 5.69
202 203 1.792367 GTTTTGCTGAAATCAACCCGC 59.208 47.619 0.00 0.00 0.00 6.13
203 204 2.794350 GTGTTTTGCTGAAATCAACCCG 59.206 45.455 0.00 0.00 0.00 5.28
204 205 3.791245 TGTGTTTTGCTGAAATCAACCC 58.209 40.909 0.00 0.00 0.00 4.11
205 206 4.211794 CCATGTGTTTTGCTGAAATCAACC 59.788 41.667 0.00 0.00 0.00 3.77
206 207 5.049167 TCCATGTGTTTTGCTGAAATCAAC 58.951 37.500 0.00 0.00 0.00 3.18
207 208 5.049167 GTCCATGTGTTTTGCTGAAATCAA 58.951 37.500 0.00 0.00 0.00 2.57
208 209 4.341806 AGTCCATGTGTTTTGCTGAAATCA 59.658 37.500 0.00 0.00 0.00 2.57
209 210 4.874970 AGTCCATGTGTTTTGCTGAAATC 58.125 39.130 0.00 0.00 0.00 2.17
210 211 4.942761 AGTCCATGTGTTTTGCTGAAAT 57.057 36.364 0.00 0.00 0.00 2.17
211 212 4.734398 AAGTCCATGTGTTTTGCTGAAA 57.266 36.364 0.00 0.00 0.00 2.69
212 213 4.734398 AAAGTCCATGTGTTTTGCTGAA 57.266 36.364 0.00 0.00 0.00 3.02
213 214 4.081752 ACAAAAGTCCATGTGTTTTGCTGA 60.082 37.500 17.70 0.00 42.42 4.26
214 215 4.033129 CACAAAAGTCCATGTGTTTTGCTG 59.967 41.667 17.70 13.28 42.42 4.41
215 216 4.183101 CACAAAAGTCCATGTGTTTTGCT 58.817 39.130 17.70 8.05 42.42 3.91
216 217 4.519191 CACAAAAGTCCATGTGTTTTGC 57.481 40.909 17.70 0.00 42.42 3.68
260 261 6.127675 ACCCGCAGTCTTGTTTTAAGTTAAAA 60.128 34.615 15.29 15.29 35.45 1.52
261 262 5.357596 ACCCGCAGTCTTGTTTTAAGTTAAA 59.642 36.000 3.88 3.88 0.00 1.52
262 263 4.883006 ACCCGCAGTCTTGTTTTAAGTTAA 59.117 37.500 0.00 0.00 0.00 2.01
263 264 4.453751 ACCCGCAGTCTTGTTTTAAGTTA 58.546 39.130 0.00 0.00 0.00 2.24
264 265 3.284617 ACCCGCAGTCTTGTTTTAAGTT 58.715 40.909 0.00 0.00 0.00 2.66
265 266 2.927028 ACCCGCAGTCTTGTTTTAAGT 58.073 42.857 0.00 0.00 0.00 2.24
266 267 3.314080 TCAACCCGCAGTCTTGTTTTAAG 59.686 43.478 0.00 0.00 0.00 1.85
267 268 3.280295 TCAACCCGCAGTCTTGTTTTAA 58.720 40.909 0.00 0.00 0.00 1.52
268 269 2.920524 TCAACCCGCAGTCTTGTTTTA 58.079 42.857 0.00 0.00 0.00 1.52
269 270 1.757682 TCAACCCGCAGTCTTGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
270 271 1.757682 TTCAACCCGCAGTCTTGTTT 58.242 45.000 0.00 0.00 0.00 2.83
271 272 1.981256 ATTCAACCCGCAGTCTTGTT 58.019 45.000 0.00 0.00 0.00 2.83
272 273 1.880027 GAATTCAACCCGCAGTCTTGT 59.120 47.619 0.00 0.00 0.00 3.16
273 274 2.154462 AGAATTCAACCCGCAGTCTTG 58.846 47.619 8.44 0.00 0.00 3.02
274 275 2.039084 AGAGAATTCAACCCGCAGTCTT 59.961 45.455 8.44 0.00 0.00 3.01
275 276 1.625818 AGAGAATTCAACCCGCAGTCT 59.374 47.619 8.44 0.00 0.00 3.24
276 277 1.734465 CAGAGAATTCAACCCGCAGTC 59.266 52.381 8.44 0.00 0.00 3.51
277 278 1.347707 TCAGAGAATTCAACCCGCAGT 59.652 47.619 8.44 0.00 0.00 4.40
278 279 2.099141 TCAGAGAATTCAACCCGCAG 57.901 50.000 8.44 0.00 0.00 5.18
279 280 2.559698 TTCAGAGAATTCAACCCGCA 57.440 45.000 8.44 0.00 0.00 5.69
280 281 4.876107 TCTATTTCAGAGAATTCAACCCGC 59.124 41.667 8.44 0.00 0.00 6.13
293 294 6.935240 TCAGAAAAGTCCCTCTATTTCAGA 57.065 37.500 0.00 0.00 34.91 3.27
294 295 7.986085 TTTCAGAAAAGTCCCTCTATTTCAG 57.014 36.000 0.00 0.00 34.91 3.02
295 296 8.760980 TTTTTCAGAAAAGTCCCTCTATTTCA 57.239 30.769 8.34 0.00 34.91 2.69
296 297 9.631452 CATTTTTCAGAAAAGTCCCTCTATTTC 57.369 33.333 8.34 0.00 38.09 2.17
297 298 8.588472 CCATTTTTCAGAAAAGTCCCTCTATTT 58.412 33.333 8.34 0.00 38.09 1.40
298 299 7.310052 GCCATTTTTCAGAAAAGTCCCTCTATT 60.310 37.037 8.34 0.00 38.09 1.73
299 300 6.153510 GCCATTTTTCAGAAAAGTCCCTCTAT 59.846 38.462 8.34 0.00 38.09 1.98
300 301 5.476945 GCCATTTTTCAGAAAAGTCCCTCTA 59.523 40.000 8.34 0.00 38.09 2.43
301 302 4.281941 GCCATTTTTCAGAAAAGTCCCTCT 59.718 41.667 8.34 0.00 38.09 3.69
302 303 4.039124 TGCCATTTTTCAGAAAAGTCCCTC 59.961 41.667 8.34 0.00 38.09 4.30
303 304 3.966665 TGCCATTTTTCAGAAAAGTCCCT 59.033 39.130 8.34 0.00 38.09 4.20
304 305 4.335400 TGCCATTTTTCAGAAAAGTCCC 57.665 40.909 8.34 0.77 38.09 4.46
305 306 5.406477 GTCATGCCATTTTTCAGAAAAGTCC 59.594 40.000 8.34 1.07 38.09 3.85
306 307 5.117592 CGTCATGCCATTTTTCAGAAAAGTC 59.882 40.000 8.34 0.00 38.09 3.01
307 308 4.984161 CGTCATGCCATTTTTCAGAAAAGT 59.016 37.500 8.34 3.20 38.09 2.66
308 309 4.386652 CCGTCATGCCATTTTTCAGAAAAG 59.613 41.667 8.34 0.00 38.09 2.27
309 310 4.038522 TCCGTCATGCCATTTTTCAGAAAA 59.961 37.500 4.06 4.06 38.96 2.29
310 311 3.571828 TCCGTCATGCCATTTTTCAGAAA 59.428 39.130 0.00 0.00 0.00 2.52
311 312 3.057596 GTCCGTCATGCCATTTTTCAGAA 60.058 43.478 0.00 0.00 0.00 3.02
312 313 2.487762 GTCCGTCATGCCATTTTTCAGA 59.512 45.455 0.00 0.00 0.00 3.27
313 314 2.728846 CGTCCGTCATGCCATTTTTCAG 60.729 50.000 0.00 0.00 0.00 3.02
314 315 1.198867 CGTCCGTCATGCCATTTTTCA 59.801 47.619 0.00 0.00 0.00 2.69
315 316 1.466950 TCGTCCGTCATGCCATTTTTC 59.533 47.619 0.00 0.00 0.00 2.29
316 317 1.529226 TCGTCCGTCATGCCATTTTT 58.471 45.000 0.00 0.00 0.00 1.94
317 318 1.529226 TTCGTCCGTCATGCCATTTT 58.471 45.000 0.00 0.00 0.00 1.82
318 319 1.529226 TTTCGTCCGTCATGCCATTT 58.471 45.000 0.00 0.00 0.00 2.32
319 320 1.529226 TTTTCGTCCGTCATGCCATT 58.471 45.000 0.00 0.00 0.00 3.16
320 321 1.529226 TTTTTCGTCCGTCATGCCAT 58.471 45.000 0.00 0.00 0.00 4.40
321 322 3.008141 TTTTTCGTCCGTCATGCCA 57.992 47.368 0.00 0.00 0.00 4.92
340 341 9.709387 ACCTAATATAATAAAGCAAGTTGGGTT 57.291 29.630 4.75 0.00 0.00 4.11
358 359 9.845740 TGCACACAACATATCTTTACCTAATAT 57.154 29.630 0.00 0.00 0.00 1.28
359 360 9.845740 ATGCACACAACATATCTTTACCTAATA 57.154 29.630 0.00 0.00 0.00 0.98
360 361 8.752005 ATGCACACAACATATCTTTACCTAAT 57.248 30.769 0.00 0.00 0.00 1.73
361 362 9.325198 CTATGCACACAACATATCTTTACCTAA 57.675 33.333 0.00 0.00 29.96 2.69
362 363 8.700973 TCTATGCACACAACATATCTTTACCTA 58.299 33.333 0.00 0.00 29.96 3.08
363 364 7.564793 TCTATGCACACAACATATCTTTACCT 58.435 34.615 0.00 0.00 29.96 3.08
364 365 7.786178 TCTATGCACACAACATATCTTTACC 57.214 36.000 0.00 0.00 29.96 2.85
365 366 8.830580 ACATCTATGCACACAACATATCTTTAC 58.169 33.333 0.00 0.00 29.96 2.01
366 367 8.962884 ACATCTATGCACACAACATATCTTTA 57.037 30.769 0.00 0.00 29.96 1.85
367 368 7.870509 ACATCTATGCACACAACATATCTTT 57.129 32.000 0.00 0.00 29.96 2.52
368 369 7.870509 AACATCTATGCACACAACATATCTT 57.129 32.000 0.00 0.00 29.96 2.40
369 370 7.169813 CGTAACATCTATGCACACAACATATCT 59.830 37.037 0.00 0.00 29.96 1.98
370 371 7.283633 CGTAACATCTATGCACACAACATATC 58.716 38.462 0.00 0.00 29.96 1.63
390 391 3.545078 CGTGCAGTACATAGAACCGTAAC 59.455 47.826 0.00 0.00 0.00 2.50
393 394 1.542915 ACGTGCAGTACATAGAACCGT 59.457 47.619 0.00 0.00 0.00 4.83
427 428 3.173668 TGCAACTCATACACCGATACC 57.826 47.619 0.00 0.00 0.00 2.73
436 437 6.313658 TGACAATCACACTATGCAACTCATAC 59.686 38.462 0.00 0.00 36.63 2.39
450 451 9.265901 AGTAGATAATAAGCATGACAATCACAC 57.734 33.333 0.00 0.00 0.00 3.82
451 452 9.481340 GAGTAGATAATAAGCATGACAATCACA 57.519 33.333 0.00 0.00 0.00 3.58
452 453 8.642885 CGAGTAGATAATAAGCATGACAATCAC 58.357 37.037 0.00 0.00 0.00 3.06
453 454 8.360390 ACGAGTAGATAATAAGCATGACAATCA 58.640 33.333 0.00 0.00 0.00 2.57
454 455 8.642885 CACGAGTAGATAATAAGCATGACAATC 58.357 37.037 0.00 0.00 0.00 2.67
455 456 7.600375 CCACGAGTAGATAATAAGCATGACAAT 59.400 37.037 0.00 0.00 0.00 2.71
456 457 6.923508 CCACGAGTAGATAATAAGCATGACAA 59.076 38.462 0.00 0.00 0.00 3.18
457 458 6.264518 TCCACGAGTAGATAATAAGCATGACA 59.735 38.462 0.00 0.00 0.00 3.58
458 459 6.678878 TCCACGAGTAGATAATAAGCATGAC 58.321 40.000 0.00 0.00 0.00 3.06
508 509 3.351740 AGATCGAGATCGTGCTGGATAT 58.648 45.455 7.37 0.92 42.48 1.63
546 547 2.060284 GTACACCAACACAACGCGATA 58.940 47.619 15.93 0.00 0.00 2.92
550 551 2.096119 GGTATGTACACCAACACAACGC 60.096 50.000 0.00 0.00 38.55 4.84
568 569 2.620242 GTTCGTTAAATGGCGAGGGTA 58.380 47.619 0.00 0.00 38.40 3.69
730 731 3.104602 GATCTCGCCGTCCGTTCGA 62.105 63.158 0.00 0.00 38.35 3.71
793 799 1.484065 GCCTATCCTGATCCCCTGACT 60.484 57.143 0.00 0.00 0.00 3.41
856 862 4.933064 GCGCGGGTCGGAGATGAG 62.933 72.222 8.83 0.00 40.67 2.90
865 871 4.322385 GTTTGTGTGGCGCGGGTC 62.322 66.667 8.83 0.00 0.00 4.46
869 875 2.513065 GATGAGGTTTGTGTGGCGCG 62.513 60.000 0.00 0.00 0.00 6.86
870 876 1.210155 GATGAGGTTTGTGTGGCGC 59.790 57.895 0.00 0.00 0.00 6.53
871 877 0.948623 TCGATGAGGTTTGTGTGGCG 60.949 55.000 0.00 0.00 0.00 5.69
872 878 0.517316 GTCGATGAGGTTTGTGTGGC 59.483 55.000 0.00 0.00 0.00 5.01
1113 1125 0.712222 GTCGTGTTAAGTACCTGCGC 59.288 55.000 0.00 0.00 0.00 6.09
1136 1155 4.095932 TGCTCTAGATGGTACGTGTGTTAG 59.904 45.833 0.00 0.00 0.00 2.34
1145 1169 4.036971 ACGATCTGTTGCTCTAGATGGTAC 59.963 45.833 9.32 0.00 39.54 3.34
1146 1170 4.036852 CACGATCTGTTGCTCTAGATGGTA 59.963 45.833 10.23 0.00 39.38 3.25
1147 1171 3.027412 ACGATCTGTTGCTCTAGATGGT 58.973 45.455 0.00 0.00 37.49 3.55
1149 1173 4.041049 GTCACGATCTGTTGCTCTAGATG 58.959 47.826 0.00 0.00 33.97 2.90
1153 1184 2.164422 CTGGTCACGATCTGTTGCTCTA 59.836 50.000 0.00 0.00 0.00 2.43
1510 1543 1.834263 ACGAGGGAAGAAGAAGGATGG 59.166 52.381 0.00 0.00 0.00 3.51
1511 1544 2.763448 AGACGAGGGAAGAAGAAGGATG 59.237 50.000 0.00 0.00 0.00 3.51
1512 1545 3.028130 GAGACGAGGGAAGAAGAAGGAT 58.972 50.000 0.00 0.00 0.00 3.24
1513 1546 2.448453 GAGACGAGGGAAGAAGAAGGA 58.552 52.381 0.00 0.00 0.00 3.36
1522 1566 3.132139 CGAGGCGAGACGAGGGAA 61.132 66.667 0.00 0.00 0.00 3.97
1566 1611 4.990496 AGATAGGGGAGATCCATCAGAT 57.010 45.455 0.47 0.00 38.17 2.90
1569 1614 5.222631 ACACATAGATAGGGGAGATCCATCA 60.223 44.000 0.47 0.00 37.91 3.07
1570 1615 5.276440 ACACATAGATAGGGGAGATCCATC 58.724 45.833 0.47 0.00 37.91 3.51
1571 1616 5.296909 ACACATAGATAGGGGAGATCCAT 57.703 43.478 0.47 0.00 37.91 3.41
1572 1617 4.767000 ACACATAGATAGGGGAGATCCA 57.233 45.455 0.47 0.00 37.91 3.41
1573 1618 5.186797 CAGAACACATAGATAGGGGAGATCC 59.813 48.000 0.00 0.00 0.00 3.36
1574 1619 5.777732 ACAGAACACATAGATAGGGGAGATC 59.222 44.000 0.00 0.00 0.00 2.75
1575 1620 5.721225 ACAGAACACATAGATAGGGGAGAT 58.279 41.667 0.00 0.00 0.00 2.75
1576 1621 5.144159 ACAGAACACATAGATAGGGGAGA 57.856 43.478 0.00 0.00 0.00 3.71
1577 1622 5.363868 TCAACAGAACACATAGATAGGGGAG 59.636 44.000 0.00 0.00 0.00 4.30
1578 1623 5.277250 TCAACAGAACACATAGATAGGGGA 58.723 41.667 0.00 0.00 0.00 4.81
1593 1649 7.375834 AGTACAACGATCAAGTATCAACAGAA 58.624 34.615 0.00 0.00 33.87 3.02
1666 1731 7.511463 CAATCATCGAAGAGCAAATGATCTAG 58.489 38.462 1.05 0.25 43.63 2.43
1683 1748 3.079960 ACCAGTACGTAGCAATCATCG 57.920 47.619 0.00 0.00 0.00 3.84
1686 1751 4.817464 ACAAAAACCAGTACGTAGCAATCA 59.183 37.500 0.00 0.00 0.00 2.57
1732 1800 9.933723 GTACCCTCTAGACAAGTAATTTAAACA 57.066 33.333 0.00 0.00 0.00 2.83
1745 1813 1.848652 GGCACTGTACCCTCTAGACA 58.151 55.000 0.00 0.00 0.00 3.41
1746 1814 0.739561 CGGCACTGTACCCTCTAGAC 59.260 60.000 0.00 0.00 0.00 2.59
1748 1816 1.609555 GATCGGCACTGTACCCTCTAG 59.390 57.143 0.00 0.00 0.00 2.43
1749 1817 1.688772 GATCGGCACTGTACCCTCTA 58.311 55.000 0.00 0.00 0.00 2.43
1750 1818 1.043673 GGATCGGCACTGTACCCTCT 61.044 60.000 0.00 0.00 0.00 3.69
1751 1819 1.327690 TGGATCGGCACTGTACCCTC 61.328 60.000 0.00 0.00 0.00 4.30
1752 1820 0.691078 ATGGATCGGCACTGTACCCT 60.691 55.000 0.00 0.00 0.00 4.34
1769 1897 6.663523 ACATAAACCAAAGGGGAAGAACTATG 59.336 38.462 0.00 0.00 41.15 2.23
1773 1901 4.830600 TGACATAAACCAAAGGGGAAGAAC 59.169 41.667 0.00 0.00 41.15 3.01
1784 1912 4.901197 TGGCTAGAGTGACATAAACCAA 57.099 40.909 0.00 0.00 0.00 3.67
1785 1913 4.901197 TTGGCTAGAGTGACATAAACCA 57.099 40.909 0.00 0.00 0.00 3.67
1787 1915 6.040878 ACGTATTGGCTAGAGTGACATAAAC 58.959 40.000 0.00 0.00 0.00 2.01
1790 1918 7.013942 ACAATACGTATTGGCTAGAGTGACATA 59.986 37.037 37.97 0.00 45.54 2.29
1791 1919 6.183360 ACAATACGTATTGGCTAGAGTGACAT 60.183 38.462 37.97 18.78 45.54 3.06
1872 2150 2.973180 GATAGCAGTTCCGGGCGGAC 62.973 65.000 0.00 0.00 45.11 4.79
1877 2155 2.158755 AGAAATGGATAGCAGTTCCGGG 60.159 50.000 0.00 0.00 35.94 5.73
1886 2167 4.558538 ATTTGTCGCAGAAATGGATAGC 57.441 40.909 0.00 0.00 39.69 2.97
1918 2199 8.943002 CAACAACCGTTAGTAAATAATTCCTCT 58.057 33.333 0.00 0.00 32.75 3.69
1923 2204 6.804783 GCAGCAACAACCGTTAGTAAATAATT 59.195 34.615 0.00 0.00 32.75 1.40
1925 2206 5.470777 AGCAGCAACAACCGTTAGTAAATAA 59.529 36.000 0.00 0.00 32.75 1.40
1928 2209 3.002862 CAGCAGCAACAACCGTTAGTAAA 59.997 43.478 0.00 0.00 32.75 2.01
1937 2218 2.337532 CTGGCAGCAGCAACAACC 59.662 61.111 0.00 0.00 44.61 3.77
1953 2234 3.072622 GGGGTAAGATCTAATTTCCCGCT 59.927 47.826 0.00 0.00 34.78 5.52
1995 2276 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
1996 2277 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
1997 2278 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
1998 2279 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
1999 2280 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
2000 2281 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
2001 2282 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
2002 2283 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
2003 2284 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
2004 2285 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
2005 2286 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
2006 2287 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
2007 2288 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
2008 2289 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2009 2290 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2010 2291 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2011 2292 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2012 2293 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2013 2294 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2014 2295 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2015 2296 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2016 2297 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
2017 2298 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
2018 2299 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
2019 2300 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
2020 2301 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
2055 2336 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
2056 2337 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2057 2338 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2058 2339 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2059 2340 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2060 2341 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2061 2342 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2062 2343 5.237344 CCATCCGTTCCAAAATAGATGACTC 59.763 44.000 0.00 0.00 32.55 3.36
2063 2344 5.104527 TCCATCCGTTCCAAAATAGATGACT 60.105 40.000 0.00 0.00 32.55 3.41
2064 2345 5.123227 TCCATCCGTTCCAAAATAGATGAC 58.877 41.667 0.00 0.00 32.55 3.06
2065 2346 5.104527 ACTCCATCCGTTCCAAAATAGATGA 60.105 40.000 0.00 0.00 32.55 2.92
2066 2347 5.126067 ACTCCATCCGTTCCAAAATAGATG 58.874 41.667 0.00 0.00 31.49 2.90
2067 2348 5.373812 ACTCCATCCGTTCCAAAATAGAT 57.626 39.130 0.00 0.00 0.00 1.98
2068 2349 4.837093 ACTCCATCCGTTCCAAAATAGA 57.163 40.909 0.00 0.00 0.00 1.98
2069 2350 7.713507 TGTATTACTCCATCCGTTCCAAAATAG 59.286 37.037 0.00 0.00 0.00 1.73
2070 2351 7.566569 TGTATTACTCCATCCGTTCCAAAATA 58.433 34.615 0.00 0.00 0.00 1.40
2071 2352 6.419791 TGTATTACTCCATCCGTTCCAAAAT 58.580 36.000 0.00 0.00 0.00 1.82
2072 2353 5.806818 TGTATTACTCCATCCGTTCCAAAA 58.193 37.500 0.00 0.00 0.00 2.44
2073 2354 5.423704 TGTATTACTCCATCCGTTCCAAA 57.576 39.130 0.00 0.00 0.00 3.28
2074 2355 5.623956 ATGTATTACTCCATCCGTTCCAA 57.376 39.130 0.00 0.00 0.00 3.53
2075 2356 5.011329 GGTATGTATTACTCCATCCGTTCCA 59.989 44.000 0.00 0.00 0.00 3.53
2076 2357 5.011329 TGGTATGTATTACTCCATCCGTTCC 59.989 44.000 0.00 0.00 0.00 3.62
2077 2358 6.092955 TGGTATGTATTACTCCATCCGTTC 57.907 41.667 0.00 0.00 0.00 3.95
2078 2359 6.681729 ATGGTATGTATTACTCCATCCGTT 57.318 37.500 10.59 0.00 34.30 4.44
2079 2360 6.282199 GATGGTATGTATTACTCCATCCGT 57.718 41.667 21.52 9.70 44.87 4.69
2090 2371 9.524496 AGCAATGTATGATTGATGGTATGTATT 57.476 29.630 0.00 0.00 0.00 1.89
2094 2375 7.019418 CGAAGCAATGTATGATTGATGGTATG 58.981 38.462 0.00 0.00 37.88 2.39
2116 2397 5.944013 TGGATTTTTGCATAAATCGACGAA 58.056 33.333 26.15 12.97 42.68 3.85
2191 2486 0.610687 GACCTCTTCCAGACCCTGTG 59.389 60.000 0.00 0.00 0.00 3.66
2227 2522 4.705507 TGTAGTAGTTCTCTAGCCCACTTG 59.294 45.833 0.00 0.00 0.00 3.16
2240 2535 7.626452 GCCTGAAAAATGGACATGTAGTAGTTC 60.626 40.741 0.00 0.00 0.00 3.01
2242 2537 5.648092 GCCTGAAAAATGGACATGTAGTAGT 59.352 40.000 0.00 0.00 0.00 2.73
2243 2538 5.882557 AGCCTGAAAAATGGACATGTAGTAG 59.117 40.000 0.00 0.00 0.00 2.57
2244 2539 5.815581 AGCCTGAAAAATGGACATGTAGTA 58.184 37.500 0.00 0.00 0.00 1.82
2260 2555 4.464008 AGATTTTTCACACTGAGCCTGAA 58.536 39.130 0.00 0.00 0.00 3.02
2295 2591 2.158755 GGACCCCCTGTTCTACATGATG 60.159 54.545 0.00 0.00 0.00 3.07
2296 2592 2.127708 GGACCCCCTGTTCTACATGAT 58.872 52.381 0.00 0.00 0.00 2.45
2319 2615 2.747989 CAAGATGATGTGCTGCTGAAGT 59.252 45.455 0.00 0.00 0.00 3.01
2347 2643 4.037222 GACCCCCAATGGAAATTTGGTAT 58.963 43.478 0.00 0.00 41.74 2.73
2348 2644 3.445987 GACCCCCAATGGAAATTTGGTA 58.554 45.455 0.00 0.00 41.74 3.25
2374 2670 3.840666 ACACCTGTCTGTATCTCCATTGT 59.159 43.478 0.00 0.00 0.00 2.71
2394 2690 4.993028 AGGTTTATGTAAGCTTTGGGACA 58.007 39.130 3.20 2.72 41.68 4.02
2399 2695 6.970484 ACTTGTGAGGTTTATGTAAGCTTTG 58.030 36.000 3.20 0.00 44.30 2.77
2467 2763 3.489738 CCAGATCATTCGGACCAAAATGC 60.490 47.826 10.44 0.95 33.76 3.56
2473 2769 0.107703 GTGCCAGATCATTCGGACCA 60.108 55.000 0.00 0.00 0.00 4.02
2474 2770 0.107703 TGTGCCAGATCATTCGGACC 60.108 55.000 0.00 0.00 0.00 4.46
2475 2771 1.959042 ATGTGCCAGATCATTCGGAC 58.041 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.